Metagenome Family F101823

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F101823
Family Type	Metagenome
Number of Sequences	102
Average Sequence Length	65 residues
Representative Sequence	QCLKMLFPYTAGSMHTRVNARWDLATAIKYLEHDLGYKGLYTIEASNGHEGTQQIYDVVVATL
Number of Associated Samples	83
Number of Associated Scaffolds	102

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.98 %
% of genes near scaffold ends (potentially truncated)	97.06 %
% of genes from short scaffolds (< 2000 bps)	94.12 %
Associated GOLD sequencing projects	80
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.46

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (90.196 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere (13.725 % of family members)
Environment Ontology (ENVO)	Unclassified (37.255 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (50.980 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 12.09% β-sheet: 23.08% Coil/Unstructured: 64.84%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.46
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.46
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 102 Family Scaffolds
PF13442	Cytochrome_CBB3	20.59
PF00034	Cytochrom_C	9.80
PF11219	DUF3014	4.90
PF13360	PQQ_2	3.92
PF02738	MoCoBD_1	3.92
PF06439	3keto-disac_hyd	3.92
PF02634	FdhD-NarQ	2.94
PF01797	Y1_Tnp	1.96
PF07676	PD40	1.96
PF01011	PQQ	1.96
PF13517	FG-GAP_3	1.96
PF01019	G_glu_transpept	1.96
PF03551	PadR	1.96
PF03401	TctC	0.98
PF00106	adh_short	0.98
PF00201	UDPGT	0.98
PF13432	TPR_16	0.98
PF13570	PQQ_3	0.98
PF07969	Amidohydro_3	0.98
PF01784	NIF3	0.98
PF01261	AP_endonuc_2	0.98
PF13229	Beta_helix	0.98
PF03155	Alg6_Alg8	0.98
PF00459	Inositol_P	0.98

COG ID	Name	Functional Category	% Frequency in 102 Family Scaffolds
COG1526	Formate dehydrogenase assembly factor FdhD, a sulfurtransferase	Energy production and conversion [C]	2.94
COG0405	Gamma-glutamyltranspeptidase	Amino acid transport and metabolism [E]	1.96
COG1695	DNA-binding transcriptional regulator, PadR family	Transcription [K]	1.96
COG1733	DNA-binding transcriptional regulator, HxlR family	Transcription [K]	1.96
COG1819	UDP:flavonoid glycosyltransferase YjiC, YdhE family	Carbohydrate transport and metabolism [G]	1.96
COG1846	DNA-binding transcriptional regulator, MarR family	Transcription [K]	1.96
COG1943	REP element-mobilizing transposase RayT	Mobilome: prophages, transposons [X]	1.96
COG0327	Putative GTP cyclohydrolase 1 type 2, NIF3 family	Coenzyme transport and metabolism [H]	0.98
COG3181	Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctC	Energy production and conversion [C]	0.98
COG3323	PII-like insert in the uncharacterized protein YqfO, YbgI/NIF3 family	Function unknown [S]	0.98

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	90.20 %
Unclassified	root	N/A	9.80 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	90.20 %
Unclassified	root	N/A	9.80 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	90.20 %
Unclassified	root	N/A	9.80 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	70.59 %
Unclassified	root	N/A	9.80 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	1.96 %

Name	Rank	Taxonomy	Distribution
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	17.65 %
Unclassified	root	N/A	9.80 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	4.90 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1.96 %
Vicinamibacteria	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria	0.98 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	13.73 %
Unclassified	root	N/A	9.80 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	2.94 %
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_66_21	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_12_FULL_66_21	1.96 %
Acidobacteria bacterium 13_1_40CM_4_65_8	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_40CM_4_65_8	1.96 %
unclassified Verrucomicrobia	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia	1.96 %
Vicinamibacterales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales	0.98 %
Candidatus Angelobacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Angelobacter	0.98 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	13.73 %
Unclassified	root	N/A	9.80 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2.94 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1.96 %
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_66_21	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_12_FULL_66_21	1.96 %
Acidobacteria bacterium 13_1_40CM_4_65_8	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_40CM_4_65_8	1.96 %
Vicinamibacteraceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae	0.98 %
unclassified Candidatus Angelobacter	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Angelobacter → unclassified Candidatus Angelobacter	0.98 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	13.73 %
Unclassified	root	N/A	9.80 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1.96 %
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_66_21	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_12_FULL_66_21	1.96 %
Acidobacteria bacterium 13_1_40CM_4_65_8	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_40CM_4_65_8	1.96 %
unclassified Acidobacteriaceae	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae	0.98 %
Luteitalea	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea	0.98 %
Candidatus Angelobacter sp. Gp1-AA117	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Angelobacter → unclassified Candidatus Angelobacter → Candidatus Angelobacter sp. Gp1-AA117	0.98 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	13.73 %
Unclassified	root	N/A	9.80 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1.96 %
Acidobacteria bacterium RIFCSPLOWO2_12_FULL_66_21	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_12_FULL_66_21	1.96 %
Acidobacteria bacterium 13_1_40CM_4_65_8	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_40CM_4_65_8	1.96 %
Luteitalea pratensis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → Luteitalea pratensis	0.98 %
Acidobacteriaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium	0.98 %
Candidatus Angelobacter sp. Gp1-AA117	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Angelobacter → unclassified Candidatus Angelobacter → Candidatus Angelobacter sp. Gp1-AA117	0.98 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000891\|JGI10214J12806_10671533	All Organisms → cellular organisms → Bacteria → Acidobacteria	699	Open in IMG/M
3300000956\|JGI10216J12902_100314748	All Organisms → cellular organisms → Bacteria → Acidobacteria	614	Open in IMG/M
3300000956\|JGI10216J12902_101811124	All Organisms → cellular organisms → Bacteria → Acidobacteria	558	Open in IMG/M
3300000956\|JGI10216J12902_102785504	All Organisms → cellular organisms → Bacteria	1653	Open in IMG/M
3300000956\|JGI10216J12902_103956036	All Organisms → cellular organisms → Bacteria	1199	Open in IMG/M
3300000956\|JGI10216J12902_106170740	All Organisms → cellular organisms → Bacteria → Acidobacteria	629	Open in IMG/M
3300000956\|JGI10216J12902_115098173	All Organisms → cellular organisms → Bacteria → Acidobacteria	865	Open in IMG/M
3300001431\|F14TB_101808403	Not Available	695	Open in IMG/M
3300002074\|JGI24748J21848_1028251	All Organisms → cellular organisms → Bacteria → Acidobacteria	689	Open in IMG/M
3300004114\|Ga0062593_100213193	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1553	Open in IMG/M
3300004114\|Ga0062593_101607833	All Organisms → cellular organisms → Bacteria → Acidobacteria	705	Open in IMG/M
3300004156\|Ga0062589_102311109	All Organisms → cellular organisms → Bacteria → Acidobacteria	553	Open in IMG/M
3300004480\|Ga0062592_100619236	All Organisms → cellular organisms → Bacteria → Acidobacteria	924	Open in IMG/M
3300005093\|Ga0062594_101871426	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	635	Open in IMG/M
3300005093\|Ga0062594_103095317	All Organisms → cellular organisms → Bacteria → Acidobacteria	520	Open in IMG/M
3300005293\|Ga0065715_10240806	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1196	Open in IMG/M
3300005295\|Ga0065707_10273764	Not Available	1050	Open in IMG/M
3300005332\|Ga0066388_103626174	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	788	Open in IMG/M
3300005335\|Ga0070666_10070790	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium	2373	Open in IMG/M
3300005339\|Ga0070660_101733849	All Organisms → cellular organisms → Bacteria → Acidobacteria	532	Open in IMG/M
3300005353\|Ga0070669_101788709	All Organisms → cellular organisms → Bacteria → Acidobacteria	536	Open in IMG/M
3300005354\|Ga0070675_100489369	Not Available	1107	Open in IMG/M
3300005366\|Ga0070659_100382791	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1185	Open in IMG/M
3300005366\|Ga0070659_101985111	All Organisms → cellular organisms → Bacteria → Acidobacteria	522	Open in IMG/M
3300005468\|Ga0070707_100920166	Not Available	839	Open in IMG/M
3300005544\|Ga0070686_100743638	Not Available	786	Open in IMG/M
3300005713\|Ga0066905_100128206	All Organisms → cellular organisms → Bacteria	1785	Open in IMG/M
3300005842\|Ga0068858_101717994	All Organisms → cellular organisms → Bacteria → Acidobacteria	620	Open in IMG/M
3300005843\|Ga0068860_102735094	All Organisms → cellular organisms → Bacteria → Acidobacteria	512	Open in IMG/M
3300005874\|Ga0075288_1082712	All Organisms → cellular organisms → Bacteria → Acidobacteria	525	Open in IMG/M
3300006049\|Ga0075417_10343456	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_12_FULL_66_21	730	Open in IMG/M
3300006169\|Ga0082029_1624979	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	918	Open in IMG/M
3300006847\|Ga0075431_100579315	All Organisms → cellular organisms → Bacteria → Acidobacteria	1108	Open in IMG/M
3300006871\|Ga0075434_102146749	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	563	Open in IMG/M
3300006876\|Ga0079217_10906854	All Organisms → cellular organisms → Bacteria → Acidobacteria	630	Open in IMG/M
3300006903\|Ga0075426_11546889	All Organisms → cellular organisms → Bacteria → Acidobacteria	504	Open in IMG/M
3300006904\|Ga0075424_101915874	All Organisms → cellular organisms → Bacteria → Acidobacteria	626	Open in IMG/M
3300006969\|Ga0075419_11494917	All Organisms → cellular organisms → Bacteria → Acidobacteria	506	Open in IMG/M
3300009098\|Ga0105245_11968715	All Organisms → cellular organisms → Bacteria → Acidobacteria	638	Open in IMG/M
3300009147\|Ga0114129_10928199	All Organisms → cellular organisms → Bacteria	1101	Open in IMG/M
3300009147\|Ga0114129_12521746	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_40CM_4_65_8	614	Open in IMG/M
3300009147\|Ga0114129_12768529	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	583	Open in IMG/M
3300009162\|Ga0075423_13056354	All Organisms → cellular organisms → Bacteria → Acidobacteria	513	Open in IMG/M
3300009162\|Ga0075423_13097722	All Organisms → cellular organisms → Bacteria → Acidobacteria	509	Open in IMG/M
3300009610\|Ga0105340_1384642	All Organisms → cellular organisms → Bacteria → Acidobacteria	624	Open in IMG/M
3300010166\|Ga0126306_11584091	Not Available	545	Open in IMG/M
3300010397\|Ga0134124_12918447	All Organisms → cellular organisms → Bacteria	522	Open in IMG/M
3300010399\|Ga0134127_12053389	All Organisms → cellular organisms → Bacteria → Acidobacteria	650	Open in IMG/M
3300012204\|Ga0137374_10573796	All Organisms → cellular organisms → Bacteria → Acidobacteria	864	Open in IMG/M
3300012212\|Ga0150985_100423551	All Organisms → cellular organisms → Bacteria	6098	Open in IMG/M
3300012212\|Ga0150985_105638521	All Organisms → cellular organisms → Bacteria → Acidobacteria	723	Open in IMG/M
3300012362\|Ga0137361_10393440	All Organisms → cellular organisms → Bacteria → Acidobacteria	1273	Open in IMG/M
3300012469\|Ga0150984_107205930	All Organisms → cellular organisms → Bacteria	615	Open in IMG/M
3300012469\|Ga0150984_121469192	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	571	Open in IMG/M
3300012891\|Ga0157305_10075453	All Organisms → cellular organisms → Bacteria → Acidobacteria	782	Open in IMG/M
3300012957\|Ga0164303_11330934	All Organisms → cellular organisms → Bacteria	533	Open in IMG/M
3300012985\|Ga0164308_10330673	All Organisms → cellular organisms → Bacteria	1222	Open in IMG/M
3300012985\|Ga0164308_12241568	All Organisms → cellular organisms → Bacteria → Acidobacteria	508	Open in IMG/M
3300012989\|Ga0164305_11342099	All Organisms → cellular organisms → Bacteria → Acidobacteria	627	Open in IMG/M
3300013100\|Ga0157373_10657012	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	766	Open in IMG/M
3300014325\|Ga0163163_11646292	All Organisms → cellular organisms → Bacteria → Acidobacteria	703	Open in IMG/M
3300014326\|Ga0157380_10628318	Not Available	1067	Open in IMG/M
3300014969\|Ga0157376_10274692	All Organisms → cellular organisms → Bacteria	1585	Open in IMG/M
3300015359\|Ga0134085_10552906	All Organisms → cellular organisms → Bacteria → Acidobacteria	531	Open in IMG/M
3300015371\|Ga0132258_10217574	All Organisms → cellular organisms → Bacteria	4645	Open in IMG/M
3300015371\|Ga0132258_10908191	All Organisms → cellular organisms → Bacteria	2224	Open in IMG/M
3300015371\|Ga0132258_13400372	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1093	Open in IMG/M
3300015372\|Ga0132256_103477179	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	529	Open in IMG/M
3300015373\|Ga0132257_102779197	All Organisms → cellular organisms → Bacteria → Acidobacteria	638	Open in IMG/M
3300018056\|Ga0184623_10166076	All Organisms → cellular organisms → Bacteria	1019	Open in IMG/M
3300018078\|Ga0184612_10445516	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	645	Open in IMG/M
3300018476\|Ga0190274_10045576	All Organisms → cellular organisms → Bacteria → Acidobacteria	3128	Open in IMG/M
3300019873\|Ga0193700_1068667	All Organisms → cellular organisms → Bacteria	529	Open in IMG/M
3300021363\|Ga0193699_10303456	All Organisms → cellular organisms → Bacteria → Acidobacteria	665	Open in IMG/M
3300022694\|Ga0222623_10115956	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1043	Open in IMG/M
3300022756\|Ga0222622_10679075	Not Available	747	Open in IMG/M
3300025920\|Ga0207649_11030804	All Organisms → cellular organisms → Bacteria → Acidobacteria	648	Open in IMG/M
3300025925\|Ga0207650_10169862	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → Luteitalea pratensis	1732	Open in IMG/M
3300025926\|Ga0207659_11900397	All Organisms → cellular organisms → Bacteria → Acidobacteria	504	Open in IMG/M
3300025927\|Ga0207687_10613518	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Angelobacter → unclassified Candidatus Angelobacter → Candidatus Angelobacter sp. Gp1-AA117	918	Open in IMG/M
3300026319\|Ga0209647_1288499	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	550	Open in IMG/M
3300026327\|Ga0209266_1235383	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	604	Open in IMG/M
3300027682\|Ga0209971_1086252	All Organisms → cellular organisms → Bacteria	765	Open in IMG/M
3300027862\|Ga0209701_10282063	All Organisms → cellular organisms → Bacteria → Acidobacteria	961	Open in IMG/M
3300027866\|Ga0209813_10451880	All Organisms → cellular organisms → Bacteria → Acidobacteria	526	Open in IMG/M
3300027873\|Ga0209814_10276368	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium RIFCSPLOWO2_12_FULL_66_21	730	Open in IMG/M
3300027873\|Ga0209814_10430633	All Organisms → cellular organisms → Bacteria → Acidobacteria	581	Open in IMG/M
3300027876\|Ga0209974_10155919	All Organisms → cellular organisms → Bacteria	826	Open in IMG/M
3300027909\|Ga0209382_11585033	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_40CM_4_65_8	648	Open in IMG/M
3300028708\|Ga0307295_10132910	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	684	Open in IMG/M
3300028784\|Ga0307282_10240512	All Organisms → cellular organisms → Bacteria	869	Open in IMG/M
3300031226\|Ga0307497_10214853	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	841	Open in IMG/M
3300031226\|Ga0307497_10464994	Not Available	617	Open in IMG/M
3300031847\|Ga0310907_10008878	All Organisms → cellular organisms → Bacteria → Acidobacteria	3038	Open in IMG/M
3300031847\|Ga0310907_10459114	All Organisms → cellular organisms → Bacteria → Acidobacteria	674	Open in IMG/M
3300031903\|Ga0307407_10883226	All Organisms → cellular organisms → Bacteria → Acidobacteria	685	Open in IMG/M
3300031943\|Ga0310885_10515749	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	653	Open in IMG/M
3300032003\|Ga0310897_10420044	All Organisms → cellular organisms → Bacteria → Acidobacteria	636	Open in IMG/M
3300032005\|Ga0307411_11747729	All Organisms → cellular organisms → Bacteria → Acidobacteria	576	Open in IMG/M
3300032017\|Ga0310899_10183100	Not Available	916	Open in IMG/M
3300032122\|Ga0310895_10357809	All Organisms → cellular organisms → Bacteria	705	Open in IMG/M
3300033412\|Ga0310810_11223329	All Organisms → cellular organisms → Bacteria → Acidobacteria	605	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	53.92%
Host-Associated	Host-Associated	46.08%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	49.02%
Plants	Host-Associated → Plants	46.08%
Aquatic	Environmental → Aquatic	4.90%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	49.02%
Rhizosphere	Host-Associated → Plants → Rhizosphere	32.35%
Rhizoplane	Host-Associated → Plants → Rhizoplane	11.76%
Sediment	Environmental → Aquatic → Sediment	4.90%
Roots	Host-Associated → Plants → Roots	1.96%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	43.14%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	20.59%
Soil	Host-Associated → Plants → Rhizosphere → Soil	11.76%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	6.86%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	4.90%
Loam	Environmental → Terrestrial → Soil → Loam	4.90%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	4.90%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.98%
Bulk Soil	Host-Associated → Plants → Roots → Bulk Soil	0.98%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.98%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	21.57%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	20.59%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	11.76%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	8.82%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	6.86%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	6.86%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	5.88%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	4.90%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	4.90%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	1.96%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	1.96%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.98%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.98%
Unclassified	Host-Associated → Plants → Roots → Bulk Soil → Unclassified	0.98%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.98%

Habitat	Taxonomy	Distribution
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	13.73%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	12.75%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	7.84%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	5.88%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	5.88%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	3.92%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	3.92%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	2.94%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	2.94%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	1.96%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	1.96%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.96%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	1.96%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	1.96%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.96%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	1.96%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	1.96%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.96%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	1.96%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	1.96%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	0.98%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	0.98%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	0.98%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	0.98%
Termite Nest	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Termite Nest	0.98%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.98%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.98%
Rice Paddy Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Rice Paddy Soil	0.98%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.98%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.98%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.98%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere	0.98%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.98%
Populus Endosphere	Host-Associated → Plants → Roots → Bulk Soil → Unclassified → Populus Endosphere	0.98%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	0.98%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.98%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.98%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.98%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.98%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000891	Soil microbial communities from Great Prairies - Wisconsin, Continuous corn soil	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300001431	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU F1.4TB clc assemly	Environmental	Open in IMG/M
3300002074	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S1	Host-Associated	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300004480	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005293	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1	Host-Associated	Open in IMG/M
3300005295	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005335	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG	Host-Associated	Open in IMG/M
3300005339	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG	Host-Associated	Open in IMG/M
3300005353	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG	Host-Associated	Open in IMG/M
3300005354	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG	Host-Associated	Open in IMG/M
3300005366	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG	Host-Associated	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005544	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005842	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2	Host-Associated	Open in IMG/M
3300005843	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2	Host-Associated	Open in IMG/M
3300005874	Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_20C_0N_404	Environmental	Open in IMG/M
3300006049	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1	Host-Associated	Open in IMG/M
3300006169	Termite nest microbial communities from Madurai, India	Environmental	Open in IMG/M
3300006847	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006876	Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS200	Environmental	Open in IMG/M
3300006903	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD5	Host-Associated	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300006969	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3	Host-Associated	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009610	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT700	Environmental	Open in IMG/M
3300010166	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot27	Environmental	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300012204	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_100_16 metaG	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012891	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S148-409B-2	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300012985	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MG	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300013100	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG	Host-Associated	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300014326	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG	Host-Associated	Open in IMG/M
3300014969	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG	Host-Associated	Open in IMG/M
3300015359	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09182015	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300018056	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_100_b1	Environmental	Open in IMG/M
3300018078	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_60_coex	Environmental	Open in IMG/M
3300018476	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T	Environmental	Open in IMG/M
3300019873	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U3s1	Environmental	Open in IMG/M
3300021363	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3c2	Environmental	Open in IMG/M
3300022694	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_30_coex	Environmental	Open in IMG/M
3300022756	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1	Environmental	Open in IMG/M
3300025920	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025925	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025926	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025927	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026319	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_60cm (SPAdes)	Environmental	Open in IMG/M
3300026327	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132 (SPAdes)	Environmental	Open in IMG/M
3300027682	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 S AM (SPAdes)	Host-Associated	Open in IMG/M
3300027862	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027866	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 (SPAdes)	Host-Associated	Open in IMG/M
3300027873	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1 (SPAdes)	Host-Associated	Open in IMG/M
3300027876	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 S PM (SPAdes)	Host-Associated	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300028708	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_152	Environmental	Open in IMG/M
3300028784	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_121	Environmental	Open in IMG/M
3300031226	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 10_S	Environmental	Open in IMG/M
3300031847	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D4	Environmental	Open in IMG/M
3300031903	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1	Host-Associated	Open in IMG/M
3300031943	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D2	Environmental	Open in IMG/M
3300032003	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D1	Environmental	Open in IMG/M
3300032005	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1	Host-Associated	Open in IMG/M
3300032017	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D4	Environmental	Open in IMG/M
3300032122	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D4	Environmental	Open in IMG/M
3300033412	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NC	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI10214J12806_106715331	3300000891	Soil	DCIRMMFPFTAGSMHTRVNTNWDLATCIRFMEKELGWKGLYTIETGQGHAGTKEIYDVVVATI*
JGI10216J12902_1003147482	3300000956	Soil	KMMFPMTANTMHTRVSTRWDLATAMRYLEGELGYKGLYTIEASNSHEGTRAIYDVVVATLDTRT*
JGI10216J12902_1018111241	3300000956	Soil	CLKMMFPMTANSLHTRVNARWDLATAMRYLEGELGYKGLYTIEANGGHEGTRPIYDVVIATLDAKT*
JGI10216J12902_1027855043	3300000956	Soil	EELHQCLKMLFPFNAGTMHTRVNTRWDLATAIKYLEHDLGYKGLYTIEASNGHEGTQQIYDVVVATL*
JGI10216J12902_1039560362	3300000956	Soil	KMMFPMTANTMHTRVNTRWDLATAMRYLEGELGYKGLYTIEASNGHEGTRAIYDVVIATLDTKT*
JGI10216J12902_1061707402	3300000956	Soil	ELHRCLKMMFPMTANSLHTRVNARWDLATAMRYLEGELGYKGLYTIEAGNSHEGTRPIYDVVIATLDAKT*
JGI10216J12902_1150981732	3300000956	Soil	ELHRCLKMMFPMTANSLHTRVNTRWDLATAMRYLEGELGYKGLYTIEANGGHEGTRPIYDVVIATLDAKT*
F14TB_1018084032	3300001431	Soil	AGSMHTRVNTRWDLATAIKYLEHDLGYKGLYTIEAGNGHEGTQPIYDVVVATL*
JGI24748J21848_10282512	3300002074	Corn, Switchgrass And Miscanthus Rhizosphere	QDELHQCLRLFYPLSAGTMHTRVNPRWDLATAIRFLEQDLKYRGLYTIEAANGHEGTRQIYDVVVATV*
Ga0062593_1002131931	3300004114	Soil	FPFTAGSMHTRVNPRWDLATAIKFLEHDLGYKGLYTIEASNGHEGTQAIYDVVVATL*
Ga0062593_1016078332	3300004114	Soil	MLFPYNAGSMHTRVNTRWDLATAIKYLENDLGYKGLYTIEASNGHEGTQQIYDVVVATL*
Ga0062589_1023111092	3300004156	Soil	EELHRCLKMMFPMTANTMHTRVNTRWDLATAIRYLEGELGYKGLYTIEASNSHEGTRQIYDVVVATLDAKT*
Ga0062592_1006192361	3300004480	Soil	GAGAANQEELHQCLKLLFPFTAGSMHTRVNARWDLATAIKFLEHDLGYKGLYTIEASNGHEGTQPIYDVIIANI*
Ga0062594_1018714262	3300005093	Soil	MHTRVNTRWDLATAMRYLEGELGYKGLYTIEASNSHEGTRQIYDVVVATLDAKT*
Ga0062594_1030953171	3300005093	Soil	ASSQDELHQCLRLFYPLSAGTMHTRVNPRWDLATAIRFLEQDLKYRGLYTIEAANGHEGTRQIYDVVVATV*
Ga0065715_102408063	3300005293	Miscanthus Rhizosphere	PMTAGSIHTRVNQRWDLATAIKFLEHDLGYKGLYTIEANNGHEGTQPIYDVVVATL*
Ga0065707_102737641	3300005295	Switchgrass Rhizosphere	EELHQCLRLLIPITAGSIHTRVNQRWDLATAIKFLEHDLGYKGLYTIEANNGHEGTQPIYDVVVATL*
Ga0066388_1036261742	3300005332	Tropical Forest Soil	LRTMFPMTAGSMHTRLNPRWDLATAIRFLEGELRYKGLYTIEASNGHEGTQPIYDVVVATV*
Ga0070666_100707903	3300005335	Switchgrass Rhizosphere	ELHQCLKMLFPYNAGSMHTRVNTRWDLTTAINYLEKDLGYKGLYTIEASNGHEGTQQIYDVVVATL*
Ga0070660_1017338492	3300005339	Corn Rhizosphere	CLRLLIPITAGSIHTRVNQRWDLATAIRFLEHDLGYKGLYTIEAGNGHEGTQPIYDVVVATL*
Ga0070669_1017887092	3300005353	Switchgrass Rhizosphere	EELHQCLKMLFPVTAGSMHTRVNTNWDLATAIKFLEHDLGYKGLYTIEANNGHEGTQPIYDVVVATL*
Ga0070675_1004893691	3300005354	Miscanthus Rhizosphere	SMHTRVNTRWDLTTAINYLEKDLGYKGLYTIEASNGHEGTQQIYDVVVATL*
Ga0070659_1003827913	3300005366	Corn Rhizosphere	LKMLFPYNAGTMHTRVNTRWDLATAIKYLENDLGYKGLYTIEASNGHEGTQQIYDVVVATL*
Ga0070659_1019851111	3300005366	Corn Rhizosphere	NASSQDELHQCLRLFYPLSAGTMHTRVNPRWDLATAIRFLEQDLKYRGLYTIEAANGHEGTRQIYDVVVATV*
Ga0070707_1009201661	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	QCLKMLFPYTAGSMHTRVNARWDLATAIKYLEHDLGYKGLYTIEASNGHEGTQQIYDVVVATL*
Ga0070686_1007436382	3300005544	Switchgrass Rhizosphere	AGAANQEELHQCLKMLFPYNAGSMHTRVNTRWDLATAIKYLENDLGYKGLYTIEASNGHEGTQQIYDVVVATL*
Ga0066905_1001282063	3300005713	Tropical Forest Soil	VGGANAANQEELHSCLKTMFPMTAGSTHTRVNARWDLATAIKFLEGELGYKGLYTIEASNGHEGTQQIYDVVVATL*
Ga0068858_1017179941	3300005842	Switchgrass Rhizosphere	NQEELHQCLKMLFPYNAGSMHTRVNTRWDLTTAINYLEKDLGYKGLYTIEASNGHEGTQQIYDVVVATL*
Ga0068860_1027350942	3300005843	Switchgrass Rhizosphere	AKNQEELHQCLKMLFPVTAGTMHTRVSTNWDLATAIKFLEQDLGYKGLYTIEAGNGHEGTQPIYDVVVATL*
Ga0075288_10827122	3300005874	Rice Paddy Soil	GQEELHQCLRMLIPMTAGSIHTRVNARWDLATAIKFLEHDLGYKGLYTIEANNGHEGTRAIYDVVVGTL*
Ga0075417_103434561	3300006049	Populus Rhizosphere	DELHMCLKMMFPMTANSLHTRVNTRWDLATAIKYLETELKYKGLYTIEAGNGHEGTQPIYDVVVATL*
Ga0082029_16249791	3300006169	Termite Nest	EELHRCLKMMFPMTANSLHTRVNTRWDLATAMRYLEGELGYKGLYTIEASNSHEGTRQIYDVVVATLDAKT*
Ga0075431_1005793151	3300006847	Populus Rhizosphere	NQDELHMCLKTMFPMTANSLHTRVNTRWDLATAIKYLEGELKYKGLYTIEASNGHEGTQPIYDVVVATL*
Ga0075434_1021467492	3300006871	Populus Rhizosphere	ELHACLKTMFPMTAGSMHTRVNTRWDLATAITFLEGELGYKGLYTIEASNGHEGTQQIYDVVVATL*
Ga0079217_109068541	3300006876	Agricultural Soil	GSVHTRVNTRWDLATVIRYLERELGYKGLYTIETGNGHVGTREIYDVVVATLDART*
Ga0075426_115468892	3300006903	Populus Rhizosphere	LIPLTSGQIHTRVNQRWDLATAIKFLEHDLGYKGLYTIEASNGHEGTQEIYDVVVATL*
Ga0075424_1019158741	3300006904	Populus Rhizosphere	PLTSGQIHTRVNQRWDLATAIKFLEHDLGYKGLYTIEASNGHEGTQEIYDVVVATL*
Ga0075419_114949172	3300006969	Populus Rhizosphere	FTAGSMHTRVNQNWDLATCIRFMEKELGWKGLYTIETGQAHTGTKEIYDVVVATL*
Ga0105245_119687151	3300009098	Miscanthus Rhizosphere	QEELHQFLKMLFPYNAGTMHTRVNTRWDLATAIKYLENDLGYKGLYTIEASNGHEGTQQIYDVVVATL*
Ga0114129_109281993	3300009147	Populus Rhizosphere	AANQDELHACLKTMFPMTAGSMHTRVNTRWDLATAIRFLEGELGYKGLYTIESSNAHDGTKEIYDVVVATL*
Ga0114129_125217461	3300009147	Populus Rhizosphere	GATSQEELHSCLKLMFPMTASTMHTRVNTRWDLATAIKYLEGDLKYKGLYTIEASNGHEGTQQIYDVVVATL*
Ga0114129_127685292	3300009147	Populus Rhizosphere	AANQEELHTCLKTMFPMTAGSMHTRVNMNWDLATAIKFLEGELGYKGLYTIEASNSHEGTKEIYDVVVATL*
Ga0075423_130563542	3300009162	Populus Rhizosphere	QEELHSCLKMMFPMTAGSTHTRVNARWDLATAIKFLEGELGYKGLYTIEASNGHEGTQQIYDVVAATL*
Ga0075423_130977221	3300009162	Populus Rhizosphere	RLLIPITAGSIHTRVNQRWDLATAIRFLEHDLGYKGLYTIEAGNGHEGTQPIYDVVVATL
Ga0105340_13846422	3300009610	Soil	LHTCLRMLFPYTANTMHTRVNNNWDLATAMRFLEKDLGYKGLYTIETNGHAGTKAVYDVVVATLSAL*
Ga0126306_115840912	3300010166	Serpentine Soil	GANAANQEELHSCLKMMFPMTANTMHTRVNTRWDLATAMRYLEGELGYKGLYTIEASNGHEGTRAIYDVVIATLDAKT*
Ga0134124_129184471	3300010397	Terrestrial Soil	MLFPFTAGSMHTRVNQRWDLATAIKFLEHDLGYKGLYTIEASNGHEGTQAIYDVVVATL*
Ga0134127_120533892	3300010399	Terrestrial Soil	HQCLRLLIPITAGSIHTRVNQRWDLATAIKFLEHDLGYKGLYTIEAGNGHEGTQPIYDVVVATL*
Ga0137374_105737962	3300012204	Vadose Zone Soil	VGGAGAANQEELHQCLKMLFPYTAGSMHTRVNTRWDLATAIKFLEHDLGYKGLYTIEASNGHEGTQAIYDVVVATL*
Ga0150985_1004235511	3300012212	Avena Fatua Rhizosphere	GAANQEELHQCLKLLFPYSAGTMHTRVNPRWDLATAIKFLEHDLGYKGLYTIEAGNGHEGTQPIYDVVVATL*
Ga0150985_1056385211	3300012212	Avena Fatua Rhizosphere	LSAGTMHTRVNPRWDLATAIRFLEQDLKYRGLDTIEAANGHEGTRQIYDVVVATV*
Ga0137361_103934401	3300012362	Vadose Zone Soil	HACLKTMFPMTAGSMHTRVNARWDLATAIRFLEHELGYKGLYTIEASNGHEGTREIYDVVVATV*
Ga0150984_1072059302	3300012469	Avena Fatua Rhizosphere	AGTMHTRVSQNWDLATAMKYLEKDLGYKGLYTIEANGGHAGTKQIYDVVVATLTSLNG*
Ga0150984_1214691921	3300012469	Avena Fatua Rhizosphere	LRLLIPLTAGSIHTRVNPRWDLATAIKFLEHDLGYKGLYTIEASNGHEGTKQIYDVVVATL*
Ga0157305_100754531	3300012891	Soil	QELHDCIRMMFPFTAGSMHTRVNANWDLATCIRFMEKELGWKGLYTIETGQGHAGTKEIYDVVIAAL*
Ga0164303_113309341	3300012957	Soil	AGSMHTRVNARWDLATAIKFLEHDLGYKGMYTIEAGYGHEGTQASYDVVVANM*
Ga0164308_103306731	3300012985	Soil	HQCLRLFYPLTAGTMHTRVNPRWDLATAIRFLEHDLKYRGLYTIEAANGHDGTREIYDVVVATV*
Ga0164308_122415682	3300012985	Soil	YPMTAGTMHTRVNPRWDLATAIRFLEQDLKYRGLYTIEAANGHEGTRQIYDVVVATV*
Ga0164305_113420992	3300012989	Soil	VGGANASSQDELHQCLRLFYPMTAGTMHTRVNPRWDLATAIRFLEQDLKYRGLYTIEAANGHEGTRQIYDVVVATV*
Ga0157373_106570121	3300013100	Corn Rhizosphere	VGGAGAANQEELHDCLRLFFPMTAGSLHTRVSPRWDLATAMKFLEHDLGYKGLYNIEASNGHDGTKEIFDVVVATL*
Ga0163163_116462922	3300014325	Switchgrass Rhizosphere	MHTRVNTRWDLATVIRYLEGELGYKGLYTIEASNSHEGTRQIYDVVVATLDAKT*
Ga0157380_106283182	3300014326	Switchgrass Rhizosphere	GSMHTRVNTRWDLATAIKYLEHDLGYKGLYTIEAGNGHEGTQPIYDVVVATL*
Ga0157376_102746923	3300014969	Miscanthus Rhizosphere	ANASSQDELHQCLRLFYPLSAGTMHTRVNPRWDLATAIRFLEQDLKYRGLYTIEAANGHEGTRQIYDVVVATV*
Ga0134085_105529061	3300015359	Grasslands Soil	LHQCLRMLFPVTAGSMHTRVNARWDLATAIKFLEHDLGYKGLYTIEASNGHEGTQPIYDVVVATL*
Ga0132258_102175741	3300015371	Arabidopsis Rhizosphere	ANTMHTRVNTRWDLATVIRYLEGELGYKGLYTIEASNSHEGTRQIYDVVVATLDAKT*
Ga0132258_109081913	3300015371	Arabidopsis Rhizosphere	PMTANTMHTRVNTRWDLATVIRYLEGELGYKGLYTIEASNSHEGTRQIYDVVVATLDAKT
Ga0132258_134003721	3300015371	Arabidopsis Rhizosphere	QEELHQCLKMLFPVTAGTMHTRVNANWDLATAIKFLEHDLGYKGLYTIEAGNGHEGTQPIYDVVVATL*
Ga0132256_1034771791	3300015372	Arabidopsis Rhizosphere	TMHTRVNANWDLATVFKFLEKDLGYKGLYTIESSMGHEGTKQIYDVVVATLSTLT*
Ga0132257_1027791972	3300015373	Arabidopsis Rhizosphere	LFPVTAGTMHTRVSTNWDLATAIKFLEQDLGYKGLYTIEAGNGHEGTQPIYDVVVATL*
Ga0184623_101660761	3300018056	Groundwater Sediment	EELHTCLKTMFPMTAGSMHTRVNTRWDLATAIKFLENELGYKGLYTIEAGNGHEGTQPIFDVVVATL
Ga0184612_104455161	3300018078	Groundwater Sediment	MTANSMHTRVNTRWDLATAIKYLEGELKYKGLYTIEASNGHEGTQPIYDVVVATL
Ga0190274_100455765	3300018476	Soil	GSIHTRVNARWDLATAIKFLESEMKYKGLYTIEANNGHEGTRPIYDVVVATL
Ga0193700_10686672	3300019873	Soil	TAGNMHTRVNPRWDLATAIKFLEHELGYKGLYTIESNNAHEGTKEIYEVVVATL
Ga0193699_103034561	3300021363	Soil	QCLKMLFPYTAGSMHTRVNPRWDLATAIKFLEHDLGYKGLYTIEASNGHEGTQPIYDVVLATL
Ga0222623_101159563	3300022694	Groundwater Sediment	PFTAGSMHTRVNARWDLATAIKFLEHDLGYKGLYTIEASNGHEGTQPIYDVIVANI
Ga0222622_106790751	3300022756	Groundwater Sediment	SQEELHQCLRLLIPLTAGSIHTRVNPRWDLATAIKFLEHDLGYKGLYTIEASNGHEGTRQIYDVVVATL
Ga0207649_110308042	3300025920	Corn Rhizosphere	ELHQCLRLFYPLSAGTMHTRVNPRWDLATAIRFLEQDLKYRGLYTIEAANGHEGTRQIYDVVVATV
Ga0207650_101698621	3300025925	Switchgrass Rhizosphere	PLSAGTMHTRVNPRWDLATAIRFLEQDLKYRGLYTIEAANGHEGTRQIYDVVVATV
Ga0207659_119003972	3300025926	Miscanthus Rhizosphere	MMFPFTAGSMHTRVNTRWDLTTAINYLEKDLGYKGLYTIEASNGHEGTQQIYDVVVATL
Ga0207687_106135182	3300025927	Miscanthus Rhizosphere	AAAKNQEELHQCLKMLFPVTAGTMHTRVNANWDLATAIKFLEHDLGYKGLYTIEAGNGHEGTQPIYDVVVATL
Ga0209647_12884992	3300026319	Grasslands Soil	TAGSMHTRVNARWDLATAIKFLEHELGYKGLYTIEASNGHEGTQPIYDVIVATL
Ga0209266_12353832	3300026327	Soil	GAGAANQEELHTCLKMLFPMTAGTMHTRVNPRWDLATAIKFLEHELGYKGLYTIESSGGHEGTKEIYDVVVATL
Ga0209971_10862522	3300027682	Arabidopsis Thaliana Rhizosphere	GAANQEELHQCLRMLFPMTAGSMHTRLNTRWDLATAIKFLEHELGYKGLYTIEASNGHEGTQPIYDVIVATL
Ga0209701_102820632	3300027862	Vadose Zone Soil	MTAQEREELHACLETMFPMTAGSMHTRVNARWDLATAIRFLEHELGYKGIYTIESSQGHEGTKEIYDVVVATL
Ga0209813_104518801	3300027866	Populus Endosphere	DLGGARALDQEELHLCLKTMFPMTANSLHTRVNTAWDLATAMKYLEGELGYKGLYTIEASNGHEGTQQIYDVIVATL
Ga0209814_102763682	3300027873	Populus Rhizosphere	DELHMCLKMMFPMTANSLHTRVNTRWDLATAIKYLETELKYKGLYTIEAGNGHEGTQPIYDVVVATL
Ga0209814_104306332	3300027873	Populus Rhizosphere	HTRVNTRWDLATTIRYLEGELGYKGLYTIEASNSHEGTRQIYDVVVATLDAKT
Ga0209974_101559192	3300027876	Arabidopsis Thaliana Rhizosphere	QCLRMLFPMTAGSMHTRLNTRWDLATAIKFLEHELGYKGLYTIEASNGHEGTQPIYDVIVATL
Ga0209382_115850332	3300027909	Populus Rhizosphere	ANSLHTRVNARWDLATAIKFLEGELKYKGLYTIEASNGHEGTQAIYDVVVATL
Ga0307295_101329101	3300028708	Soil	ANQEELHQCLKMLFPTNAGSMHTRVNARWDLATAIKFLEHDLGYKGLYTIEASNGHEGTQPIYDVVVATL
Ga0307282_102405122	3300028784	Soil	DKEELHACLKTMFPMTAGTMHTRVNPRWDLATAIKFLEHELGYKGLYTIESNNAHEGTKEIYEVVVATL
Ga0307497_102148531	3300031226	Soil	VGGAGAANQEELHQCLKMLFPYTAGSMHTRVNPRWDLATAIKFLEHDLGYKGLYTIEASNGHEGTQAIYDVVVATV
Ga0307497_104649941	3300031226	Soil	MLFPYNAGTMHTRVNARWDLATAINYLENDLGYKGLYTIEAGNGHEGTQQIYDVVVATL
Ga0310907_100088782	3300031847	Soil	PMTANTMHTRVNARWDLATAMRYLEGELGYRGLYTIEASNGHEGTRAIYDVVIATLDAKT
Ga0310907_104591142	3300031847	Soil	GGAAAPNQEELHRCLKMMFPMTANSLHTRVNTRWDLATTIRYLEGELGYKGLYTIEASNSHEGTRQIYDVVVATLDAKT
Ga0307407_108832261	3300031903	Rhizosphere	RCLKMMFPMTANSLHTRVNANWDLATAIRYLESELRYKGLYTIETGNGHDGTRQIYDVTVATLDSRT
Ga0310885_105157491	3300031943	Soil	CLKMMFPMTANSLHTRVNTRWDLATAMRYLEGELGYKGLYTIEANGGHEGTRPIYDVVIATLDAKT
Ga0310897_104200441	3300032003	Soil	PYNAGSMHTRVNTRWDLATAIKYLENDLGYKGLYTIEASNGHEGTQQIYDVVVATL
Ga0307411_117477291	3300032005	Rhizosphere	GANAPNQEELHRCLKMMFPMTANSLHTRVNTRWDLATTIRYLEGELGYKGLYTIEASNSHEGTRQIYDVVVATLDAKT
Ga0310899_101831001	3300032017	Soil	LGGAGATSQEELHQCLRLLIPITAGSIHTRVNQRWDLATAIRFLEHDLGYKGLYTIEAGNGHEGTQPIYDVVVATL
Ga0310895_103578091	3300032122	Soil	SCLKVMFPMTANTMHTRVNTRWDLATAMRYLEGELGYKGLYTIEASNGHEGTRAIYDVVIATLDAKT
Ga0310810_112233292	3300033412	Soil	ELHRCLKMMFPMTANTMHTRVNTRWDLATVIRYLEGELGYKGLYTIEASNSHEGTRQIYDVVVATLDAKT

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F101823

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences