Metagenome / Metatranscriptome Family F101802

Overview

Basic Information

• Family ID: F101802
• Family Type: Metagenome / Metatranscriptome
• Number of Sequences: 102
• Average Sequence Length: 59 residues
• Representative Sequence: TISMRIQWNGKDQGELRDRLAAYEAVGVQHILVAPVNREVDDWDEVIEGAGRLAA
• Number of Associated Samples: 93
• Number of Associated Scaffolds: 102

Quality Assessment

• Transcriptomic Evidence: Yes
• Most common taxonomic group: Bacteria
• % of genes with valid RBS motifs: 4.90 %
• % of genes near scaffold ends (potentially truncated): 93.14 %
• % of genes from short scaffolds (< 2000 bps): 96.08 %
• Associated GOLD sequencing projects: 89
• AlphaFold2 3D model prediction: Yes
• 3D model pTM-score: 0.71

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Most Common Taxonomy

• Group: Bacteria (81.373 % of family members)
• NCBI Taxonomy ID: 2
• Taxonomy: All Organisms → cellular organisms → Bacteria

Most Common Ecosystem

• GOLD Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (24.510 % of family members)
• Environment Ontology (ENVO): Unclassified (25.490 % of family members)
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline) (45.098 % of family members)

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure

• Classification: Globular
• Signal Peptide: No
• Secondary Structure distribution:
  α-helix: 33.73%
  β-sheet: 12.05%
  Coil/Unstructured: 54.22%

Predicted 3D Structure

Structural matches with SCOPe domains

SCOP family	SCOP domain	Representative PDB	TM-score
c.1.16.3: F420 dependent oxidoreductases	d1ezwa_	1ezw	0.72689
c.1.16.0: automated matches	d7bipa_	7bip	0.71924
c.1.16.1: Bacterial luciferase (alkanal monooxygenase)	d1luca_	1luc	0.71773
c.1.16.0: automated matches	d6lr1a_	6lr1	0.69118
c.1.21.1: Dihydropteroate synthetase	d1ad1a_	1ad1	0.68984

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 102 Family Scaffolds
PF00691	OmpA	5.88
PF13458	Peripla_BP_6	4.90
PF02666	PS_Dcarbxylase	3.92
PF00296	Bac_luciferase	2.94
PF01063	Aminotran_4	1.96
PF08327	AHSA1	1.96
PF00005	ABC_tran	1.96
PF01553	Acyltransferase	1.96
PF00083	Sugar_tr	1.96
PF06769	YoeB_toxin	0.98

Neighboring Clusters of Orthologous Genes (COGs)

COG ID	Name	Functional Category	% Frequency in 102 Family Scaffolds
COG0115	Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase	Amino acid transport and metabolism [E]	3.92
COG0688	Phosphatidylserine decarboxylase	Lipid transport and metabolism [I]	3.92
COG2141	Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase)	Coenzyme transport and metabolism [H]	2.94
COG1289	Uncharacterized membrane protein YccC	Function unknown [S]	0.98
COG1960	Acyl-CoA dehydrogenase related to the alkylation response protein AidB	Lipid transport and metabolism [I]	0.98
COG2072	Predicted flavoprotein CzcO associated with the cation diffusion facilitator CzcD	Inorganic ion transport and metabolism [P]	0.98
COG2161	Antitoxin component YafN of the YafNO toxin-antitoxin module, PHD/YefM family	Defense mechanisms [V]	0.98
COG2175	Taurine dioxygenase, alpha-ketoglutarate-dependent	Secondary metabolites biosynthesis, transport and catabolism [Q]	0.98
COG2917	Intracellular septation protein A	Cell cycle control, cell division, chromosome partitioning [D]	0.98
COG4115	Toxin component of the Txe-Axe toxin-antitoxin module, Txe/YoeB family	Defense mechanisms [V]	0.98

Phylogeny

NCBI Taxonomy

Level 1

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	81.37 %
Unclassified	root	N/A	18.63 %

Level 2

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	81.37 %
Unclassified	root	N/A	18.63 %

Level 3

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	81.37 %
Unclassified	root	N/A	18.63 %

Level 4

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	70.59 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.98 %
Unclassified	root	N/A	18.63 %

Level 5

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	65.69 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.98 %
Unclassified	root	N/A	18.63 %

Level 6

Name	Rank	Taxonomy	Distribution
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.98 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	10.78 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	11.76 %
Unclassified	root	N/A	18.63 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	22.55 %

Level 7

Name	Rank	Taxonomy	Distribution
Acetobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	4.90 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	22.55 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	3.92 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.98 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	0.98 %
Unclassified	root	N/A	18.63 %
unclassified Rhodospirillales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales	1.96 %

Level 8

Name	Rank	Taxonomy	Distribution
Acidisphaera	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Acidisphaera	1.96 %
Acidocella	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Acidocella	0.98 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	22.55 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	3.92 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.98 %
Prosthecomicrobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Prosthecomicrobium	0.98 %
Rhodopila	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Rhodopila	0.98 %
Rhodospirillales bacterium URHD0088	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0088	1.96 %
Unclassified	root	N/A	18.63 %

Level 9

Name	Rank	Taxonomy	Distribution
Acidocella	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Acidocella	0.98 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	22.55 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.98 %
Prosthecomicrobium hirschii	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Prosthecomicrobium → Prosthecomicrobium hirschii	0.98 %
Rhodopila	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Rhodopila	0.98 %
Rhodospirillales bacterium URHD0088	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0088	1.96 %
Unclassified	root	N/A	18.63 %
unclassified Acidisphaera	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Acidisphaera → unclassified Acidisphaera	1.96 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	2.94 %

Level 10

Name	Rank	Taxonomy	Distribution
Acidisphaera sp. L21	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Acidisphaera → unclassified Acidisphaera → Acidisphaera sp. L21	1.96 %
Acidocella	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Acidocella	0.98 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	22.55 %
Bradyrhizobium sp. Tv2a-2	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Tv2a-2	2.94 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.98 %
Prosthecomicrobium hirschii	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Prosthecomicrobium → Prosthecomicrobium hirschii	0.98 %
Rhodopila	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Rhodopila	0.98 %
Rhodospirillales bacterium URHD0088	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0088	1.96 %
Unclassified	root	N/A	18.63 %

Associated Scaffolds

Scaffold	Taxonomy	Length
2170459010|GIO7OMY01EH2GH	Not Available	520
3300004092|Ga0062389_104137079	Not Available	545
3300004631|Ga0058899_12306051	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1589
3300004635|Ga0062388_102370966	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Tv2a-2	555
3300005171|Ga0066677_10407304	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	777
3300005434|Ga0070709_10729802	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	773
3300005435|Ga0070714_101430324	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	675
3300005435|Ga0070714_101760746	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	605
3300005436|Ga0070713_101816418	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	591
3300005437|Ga0070710_11516449	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	504

Environmental Properties

Associated Habitat Types

Ecosystem

Habitat	Taxonomy	Distribution
Environmental	Environmental	84.31%
Host-Associated	Host-Associated	15.69%

Class

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	8.82%
Arthropoda	Host-Associated → Arthropoda	0.98%
Plants	Host-Associated → Plants	14.71%
Terrestrial	Environmental → Terrestrial	75.49%

Category

Habitat	Taxonomy	Distribution
Cave	Environmental → Terrestrial → Cave	0.98%
Digestive System	Host-Associated → Arthropoda → Digestive System	0.98%
Freshwater	Environmental → Aquatic → Freshwater	7.84%
Peat	Environmental → Terrestrial → Peat	2.94%
Peat Moss	Host-Associated → Plants → Peat Moss	0.98%
Plant Litter	Environmental → Terrestrial → Plant Litter	0.98%
Rhizoplane	Host-Associated → Plants → Rhizoplane	2.94%
Rhizosphere	Host-Associated → Plants → Rhizosphere	9.80%
Roots	Host-Associated → Plants → Roots	0.98%
Sediment	Environmental → Aquatic → Sediment	0.98%
Soil	Environmental → Terrestrial → Soil	70.59%

Type

Habitat	Taxonomy	Distribution
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	1.96%
Gut	Host-Associated → Arthropoda → Digestive System → Gut	0.98%
Loam	Environmental → Terrestrial → Soil → Loam	17.65%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.98%
Soil	Host-Associated → Plants → Rhizosphere → Soil	4.90%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	48.04%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	4.90%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	2.94%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.98%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified	0.98%
Unclassified	Environmental → Terrestrial → Cave → Unclassified	0.98%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.98%
Unclassified	Host-Associated → Plants → Peat Moss → Unclassified	0.98%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	7.84%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	4.90%

Subtype

Habitat	Taxonomy	Distribution
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	8.82%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	6.86%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	29.41%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	7.84%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	3.92%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.98%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	1.96%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.98%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	12.75%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	4.90%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	4.90%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	4.90%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	2.94%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	1.96%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	0.98%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.98%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified	0.98%
Unclassified	Environmental → Terrestrial → Cave → Unclassified → Unclassified	0.98%
Unclassified	Host-Associated → Arthropoda → Digestive System → Gut → Unclassified	0.98%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.98%
Unclassified	Host-Associated → Plants → Peat Moss → Unclassified → Unclassified	0.98%

Habitat

Habitat	Taxonomy	Distribution
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	1.96%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.98%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.98%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	1.96%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	3.92%
Biofilm	Environmental → Terrestrial → Cave → Unclassified → Unclassified → Biofilm	0.98%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	0.98%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	5.88%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	2.94%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	6.86%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Corn, Switchgrass And Miscanthus Rhizosphere	0.98%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	6.86%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.98%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil	0.98%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.98%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.96%
Host-Associated	Host-Associated → Plants → Peat Moss → Unclassified → Unclassified → Host-Associated	0.98%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.98%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.98%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	2.94%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	0.98%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	0.98%
Plant Litter	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter	0.98%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	24.51%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	4.90%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.98%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.98%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.98%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.98%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.98%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.98%
Termite Gut	Host-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut	0.98%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	4.90%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.98%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	2.94%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.98%

Associated Samples

Taxon OID	Sample Name	Habitat Type
2170459010	Grass soil microbial communities from Rothamsted Park, UK - December 2009 direct MP BIO1O1 lysis 0-9cm (no DNA from 10 to 21cm!!!)	Environmental
3300004092	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental
3300004631	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF234 (Metagenome Metatranscriptome)	Environmental
3300004635	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental
3300005171	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_126	Environmental
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
F62_08756390	2170459010	Grass Soil	SMRTHWSGKDGGELRERVAAFAEIGVQHIMVAPLNREVDDWDEVIEGVGRLVARQV
Ga0062389_1041370791	3300004092	Bog Forest Soil	PEFTISMRTHWNGKDRGQLRDRIAAYAEAGVQHVMVHPLDRDVDDWDAVIEGTGRVAA*
Ga0058899_123060514	3300004631	Forest Soil	PEFTISMRTHWSGKDEGELRERVAAYEAIGVQHIMVAPANREIDDWDDVIEGAGRLAAHRL*
Ga0062388_1023709661	3300004635	Bog Forest Soil	MRTHWNGKDEGELRDRVAAYDAIGVQHLLVAPINREIDDWGQIIEGTGRLVTSL*
Ga0066677_104073041	3300005171	Soil	RLRRDRPEPEFTISIRTHWNGRDQSELRDRIAAFEAVGVQHIMVAPVNREVDDWDAVIEGAGRLVARR*
Ga0070709_107298022	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	RDRPEPEFTISMRTHWNGKDEGELRERVAAYEEIGVQHILVAPVNREVDDWDEVIEGVGRLGAHRV*
Ga0070714_1014303241	3300005435	Agricultural Soil	TISMRIQWNGKDQGELRDRLAAYEAVGVQHILVAPVNREVDDWDEVIEGAGRLAA*
Ga0070714_1017607462	3300005435	Agricultural Soil	QWNGKDQGELRDRLAAYEAVGVQHVLVAPVNREVDDWDEVIEGAGRLVA*
Ga0070713_1018164182	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	SMRTHWNGKDEGELRERVAAYEEIGVQHILVAPVNREVDDWDEVIEGVGRLGAHRV*
Ga0070710_115164491	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	LEEAAPIVRRLRAARPDNFTISMRIQWNGKDQGELRDRLAAYEAVGVQHILVAPVNREVDDWDEVIEGAGRLAA*
Ga0070711_1004157023	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	FTISMRTHWNGKDEGELRERVAAYEAIGVQHIMVAPVNREVDDWGEVIEGVGRLAAKV*
Ga0066903_1032295831	3300005764	Tropical Forest Soil	SMRTQWNGKDQGELRERLAAYAAVGVQHVLIAPENREVDDWDEVIEGAGRMVGR*
Ga0075018_103345942	3300006172	Watersheds	FTISMRTQWNGKDQGELRDRVAAYEAVGVQHLLIAPVNREVDDWDEVIEGAGRMVTG*
Ga0070712_1017357411	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	EPEFTISMRTHWSGKDGGELRERVAAFAEIGVQHIMVAPLNREVDDWDEVIEGVGRLAARQV*
Ga0097621_1022721791	3300006237	Miscanthus Rhizosphere	SMRMQWNGKDEGELRDRLAAYAAVGVQHVLIAPANREVDDWDDVLEGAGRMVRR*
Ga0075522_102214672	3300006638	Arctic Peat Soil	ERPDDSFTVSMRVHWSGKDQGELSDRVAAYAAVGVGHIMIHPHDRNIDDWDSVIEGVGRLAGG*
Ga0105240_126545992	3300009093	Corn Rhizosphere	ETPEEAAPIVQRLRASRPDGFTISMRMQWNGKDEGELRDRLAAYAAVGVQHVLIAPANREVDDWDDVLEGAGRMVRR*
Ga0066709_1036641611	3300009137	Grasslands Soil	IRTHWNGRDQSELRDRIAAFEAVGVQHIMVAPVNREVDDWDAVIEGASRLVARR*
Ga0105248_126867251	3300009177	Switchgrass Rhizosphere	MRTQWNGKDQGELRDRVATYEAVGVQHLLIAPANREVDDWDEVIEGAGRLVTW*
Ga0116218_11844802	3300009522	Peatlands Soil	RMQWSGRDQGELRDRLAAYESAGVQHVLVAPENREVDDWDEVIEGARRLVGV*
Ga0116118_12810891	3300009637	Peatland	AGFTVSLRMQWNGRDQGELRDRLAAYQAAGVQHVLVAPENREVDDWDAVIEGAGRLVDG*
Ga0116226_109932462	3300009787	Host-Associated	DFTVSLRVEWNGRDQGELESKIAAFAAAGVDHILVAPQNRDVDDWDDVIEGVGRFVAG*
Ga0126382_105569692	3300010047	Tropical Forest Soil	RSERPEAEFTISMRTHWDGRDEAELRDRVAAFEAVGVQHIMIAPVDREVDNWDAVIEGAGRLVRKT*
Ga0126373_118676611	3300010048	Tropical Forest Soil	GKDQGELKDRLAAYEAAGVQHILVAPVNREVDDWDAVIEGAGRFVTATN*
Ga0123356_127671161	3300010049	Termite Gut	ISVRTHWNGKDGGELRDRVAAYAAAGVQHVLVAPVNREVDDWDEVIEGAGKLVER*
Ga0105239_115787371	3300010375	Corn Rhizosphere	HWNGKDLGELRDRVAAYAGVGVQHLLIAPVNREVDDWDEVIEGAGKLVG*
Ga0105239_130897002	3300010375	Corn Rhizosphere	SMRVQWNGKDQGELRDRLAGYEAVGVQHVLVAPVNREVDDWDEVIEGSGRLIA*
Ga0126381_1024964102	3300010376	Tropical Forest Soil	MRTHWNGKDQGELRDRVAAYEAVGVQHLLIAPVNREVDDWDEVIEGAGRLVGRTS*
Ga0150983_131255073	3300011120	Forest Soil	WSGKDQGELRDRVAAYADVGVGHIMVHPHDRNVDDWDSVIDGVGRLAGG*
Ga0137393_107382651	3300011271	Vadose Zone Soil	SMRTHWSGRDGGELRERVAAFAEIGVQHIMVAPLNREVDDWDEVIEGVGRLVARQV*
Ga0137379_104240283	3300012209	Vadose Zone Soil	EPEFTISMRTHWSGKDEGELRERVAAFAEIGVQHIMVAPVNREVDDWDEVIEGVGRLAARQV*
Ga0150984_1098312654	3300012469	Avena Fatua Rhizosphere	PEFTISMRTHWNGKDQGELRDRIAAYGEAGVQHVMVHPLNRDVDDWDEVTEGVGRVAAAL
Ga0150984_1115894522	3300012469	Avena Fatua Rhizosphere	MRTHWNGRDQGELRDRVARYAAVGVQHIMVAPENREVDDWDSVIEGTGRLVGG*
Ga0150984_1121146622	3300012469	Avena Fatua Rhizosphere	GFTISMRVSWNGKDVGALRERIAAYAAVGVQHIMVAPADREVDDWDEVIEGAGRLV*
Ga0150984_1121276042	3300012469	Avena Fatua Rhizosphere	GADFTISMRTQWNGKDQGELRDRLAAYEAVGVQHVLIAPTNREVDDWDEVIEGAGKMVTH
Ga0157374_102463802	3300013296	Miscanthus Rhizosphere	SRPDGFTISMRMQWNGKDEGELRDRLAAYAAVGVQHVLIAPANREVDDWDDVLEGAGRMVRR*
Ga0163162_106905731	3300013306	Switchgrass Rhizosphere	RPDNFTISMRIQWDGKDPGELRARLAAYGAVGVQHVLVAPVNREVDDWDEVIEGAGRMVAR*
Ga0181525_107270941	3300014654	Bog	FTVSMRLHWSGKDQGELRDRVAAYAAVGVGHIMVHPHDRNVDDWDSVIDGVGKLAHAR*
Ga0132258_115847622	3300015371	Arabidopsis Rhizosphere	PTGFTISMRTQWNGKDQGELRGRVAAYEAGGVQHLLIAPTNREVDDWDEVIEGAGRLVTR
Ga0132256_1032243231	3300015372	Arabidopsis Rhizosphere	FTISMRSHWNGKDLGELRYRVAAYAGVGVQHLLIAPVNREVDDWDEVIEGAGKLVG*
Ga0184600_1436621	3300019190	Soil	APIVERLRRDRPEPEFTISMRTHWHGKDEGELRARLAAYAEIGVQHVMVAPVNREIDDWDAVIDGTGRVAAG
Ga0210399_104857691	3300020581	Soil	TISMRTHWNGKDEGKLRERVAAYEAIGVQHIMVAPVNREIDDWDEVIEGAGRLASHRI
Ga0210401_105266911	3300020583	Soil	RPEPEFTISMRTHWNGKDEGELRCRVAAYEAIGVQHIMVAPANREIDDWDEVIEGAGRLVAHRV
Ga0210408_106685152	3300021178	Soil	TISMRTHWSGKDEGELRERVAAYEEIGVQHILVAPVNREVDDWDEVIEGVGRLGAHRV
Ga0210385_103693701	3300021402	Soil	MRTHWNGKDPGELRERIAAYAEVGVQHVMVHPLDRDVDDWDAVIEGTGHAAV
Ga0210391_105798321	3300021433	Soil	MRTHWNGKDEGELRERVAAYEEIGVQHILVAPVNREVDDWDEVIEGVGRLGAHRV
Ga0187846_100138121	3300021476	Biofilm	SMRTHWNGKDLGELRERIAAYAEIGVQHILVAPVNREVDDWDEVIEGVGRLAAA
Ga0210410_103539603	3300021479	Soil	RSDRPEPEFRISMRTHWNGKDEGELRERVAAYEEIGVQHILVAPVNREVDDWDEVIEGVGRLGAHRV
Ga0126371_116965672	3300021560	Tropical Forest Soil	LRRERPDGFTISMRMQWNGKDQGELRDRLAGYEAVGVQHVLIAPSNREVDDWDEVLEGAGRMVKG
Ga0126371_133138141	3300021560	Tropical Forest Soil	RRLRSERPGPDFTISMRMHWNGKDQGELKDRLAAYEAAGVQHILVAPVNREVDDWDAVIEGAGRFVTATN
Ga0242658_10237621	3300022530	Soil	VKRLRRDRPEPEFTISMRTHWNGKNEGELRCRVAAYEAIGVQHIMVAPANREIDDWDEVIEGAGRLVAHRV
Ga0242660_11088221	3300022531	Soil	PEFTISMRTHWNGKDGGELRDRVAAYEAIGIQHIMVAPANREIDGWDEVIEGAGRLVAHR
Ga0242662_100928182	3300022533	Soil	RTHWNGKDQGELRERVAAFEAIGVQHIMVAPVNREIDDWDEVIEGAGRLASHRI
Ga0222756_10585411	3300022709	Soil	AFTISMRTHWNGKDPGELRERIAAYAEVGVQHVMVHPLDRDVDDWDAVIEGTGHAAV
Ga0242657_10487733	3300022722	Soil	DFTISMRTQWNGKDQGELRDRIAAYEAVGVQHLLIAPVNREVDDWDEVIEGVGRLGAHRV
Ga0247676_10094041	3300024249	Soil	NGKDQGELKDRLAAYEAVGVQHILVAPVNREVDDWDAVIEGAGKFITAIN
Ga0209483_11898491	3300025862	Arctic Peat Soil	ERPDDSFTVSMRVHWSGKDQGELSDRVAAYAAVGVGHIMIHPHDRNIDDWDSVIEGVGRLAGG
Ga0207692_101719253	3300025898	Corn, Switchgrass And Miscanthus Rhizosphere	PDGFTMSMRIQWNGKDQGELRDRLAAYAAVGVQHVLVAPVNREVDDWDEVIEGAGRMVTQ
Ga0207663_106375631	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	ETPAEAAPIVQRLRATRPDNFTISMRTQWNGKDQGELRDRLAAYEAVGVQHILVAPVNREVDDWDEVIEGAGRLVA
Ga0207701_116255682	3300025930	Corn, Switchgrass And Miscanthus Rhizosphere	NGKDQGELRDRVAAYAAVGVQHLLIAPANREVDDWDEVIEGAGRLVSA
Ga0207675_1018944942	3300026118	Switchgrass Rhizosphere	HGSRETPEEAAPIVQRLRASRPDGFTISMRMQWNGKDEGELRDRLAAYAAVGVQHVLIAPANREVDDWDDVLEGAGRMVRR
Ga0209474_100375355	3300026550	Soil	RTHWNGKDEGELRARVAAYEAIGVQHIMVAPVNREVDDWDLVIEGTGRLAAHRR
Ga0209179_10803551	3300027512	Vadose Zone Soil	HWSGKDEGELRERVAAFAEIGVQHIMVAPVNREVDDWDEVIEGVGRLAARQV
Ga0209527_10657411	3300027583	Forest Soil	PEFTISMRTHWSGKDEGELRERVAAYEEIGVQHILVAPVNREVDDWDEVIEGVGRLGAHR
Ga0209331_10277461	3300027603	Forest Soil	ISIRTHWNGKDEGELRERVAAYEEIGVQHILVAPVNREVDDWDEVIEGVGRLGAHRV
Ga0209528_10350992	3300027610	Forest Soil	MRTHWNGKDEGELRERVAAYEEIGVQHILVAPVNREVDDWEEVIEGVGRLGAHRV
Ga0209446_11501631	3300027698	Bog Forest Soil	MRLHWSGKDQGELRDRVAAYAAVGVGHIMVHPHDRNVDDWDSVIEGVGRLAGD
Ga0209447_101738612	3300027701	Bog Forest Soil	MRTHWNGKDEGELRDRVAAYDAIGVQHLLVAPINREIDDWGQIIEGTGRLVTSL
Ga0209448_100594931	3300027783	Bog Forest Soil	PGFTISMRTHWNGKDRGELRDRIAAYAAAGVQHVMVHPLNRDVDDWDAVIEGTGRVAA
Ga0209139_101621381	3300027795	Bog Forest Soil	ISMRTHWNGKDRGELRDRIAAYAGAGVQHVMVHPLDRDVDDWDAVIEGTGHVAA
Ga0209166_101412401	3300027857	Surface Soil	TISMRIQWNGKDQAELRDRLAAYEAVGVEHVLVAPNNREVDDWDEVIEGAGRMVSA
Ga0209006_105214723	3300027908	Forest Soil	MRTQWNGKELGELRDRLAAYEAAGVQHVLVAPENREVDDWDTVIEGAGRLV
Ga0209006_113428001	3300027908	Forest Soil	PGNDFTVSMRIQWNGKDQGELRDRLATYEAVGVQHVLVAPNNREVDDWDEVIEGAGRMVS
Ga0307283_101779032	3300028790	Soil	GGFTISMRTQWNGKDQGELRDRLQAYQAVGVQHVLIAPENREVDDWDQVIEGAGRMVAG
Ga0302229_100148826	3300028879	Palsa	VSMRVHWSGKDQGELRDRVAAYAAIGVGHIMIHPHDRNVDDWDSVIEGVGRLAGG
Ga0302177_106299901	3300030053	Palsa	DRGELEARIAAYEAVGVQHVLIAPENREVDDWDAVIEGVGRFVAGGNGAA
Ga0210291_117432002	3300030626	Soil	ERPDDGITVSMRVHWSGKDQGELRDRVAAYAAIGVGHIMIHPHDRNVDDWDSVIEGVGRLAAG
Ga0170834_1103901271	3300031057	Forest Soil	MRTHWNGKDQGELRERAAAYEAIGVQHIMVAPVNREIDDWDEVIEGAGRLVAHGM
Ga0302325_126177471	3300031234	Palsa	FTVSMRLHWSGKDQGELRDRVAAYAAVGVGHIMVHPHDRNVDDWDGVIEGVGRLASE
Ga0318574_107730721	3300031680	Soil	ISMRTHWNGKDERELRDRVAAFAAAGVQHIMVAPVNREVDDWDEVIEGAGRLAARI
Ga0310686_1001246812	3300031708	Soil	EAAPIVQRLRADRPDAGFTVSMRMQWNGRDQGELRDRVAAYEAVGVQHLLVAPENREVDDWDAVIEGAGRLVSG
Ga0318500_103129631	3300031724	Soil	IRTHWNGKDLGELRDRIAAFEGVGVQHIMVAPVNREVDDWDEVIEGAGRLAATRV
Ga0318494_103212112	3300031751	Soil	RLRRERPEPQLTISMRTHWNGKDAGELRERLAAYEAVGVQHVMVHPVNRDVDDWDDVIEGVGRVSSRV
Ga0307475_105078611	3300031754	Hardwood Forest Soil	ISMRTHWNGKDEGELRERVAAYEEIGVQHILVAPVNREVDDWNEVIKGVGRLGAQRV
Ga0318546_106258332	3300031771	Soil	EPEFTISMRTHWNGQDEGELRDRVAAFEEVGVQHIMVAPVNREVDDWDEVIEGVGRVAAARV
Ga0318546_109500731	3300031771	Soil	RETPEEAAPIVQRLRAARPEGFTISMRMQWNGKDQGELRDRLAAYRSVGVQHVLIAPENREVDDWDEVIEGAGRMVAA
Ga0318547_107429002	3300031781	Soil	HWNGKDEGELRDRVAAFEEVGVQHIMVAPVNREVDDWDEVIEGVGRVAAARV
Ga0318548_104692732	3300031793	Soil	WNGKDEGELRDRVAAFEEVGVQHIMVAPVNREVDDWDEVIEGVGRVAAARV
Ga0318565_106335652	3300031799	Soil	AAPIVARLRRERPEPQLTISMRTHWNGKDAGELRERLAAYEAVGVQHVMVHPVNRDVDDWDDVIEGVGRVSSRV
Ga0318511_101838151	3300031845	Soil	APIVARLRRERPEPQLTISMRTHWNGKDAGELRERLAAYEAVGVQHVMVHPVNRDVDDWDDVIEGVGRVSSRV
Ga0318520_109654471	3300031897	Soil	HWDGKDQGELRERLAAYQEAGVQHLLIAPMNREVDDWDEVIEGAGRMVAA
Ga0306923_110195312	3300031910	Soil	RSDRPEPEFTISMRTHWNGKDERELRDRVAAFAAAGVQHIMVAPVNREVDDWDEVIEGAGRLAARI
Ga0310909_100582343	3300031947	Soil	RPEPEFTISMRTHWDGRDQGELRARIAAYGEAGMQHVMIHPVDRNVDDWDAVIEGTGRVA
Ga0318533_104125401	3300032059	Soil	SGTAKTKANWNGKDEGELRERVAAYVAIGVQHIMVAPVNREIDDWDEVIEGAGRLASHRI
Ga0306924_126349652	3300032076	Soil	DRPEPEFTISMRTHWNGKDERELRDRVAAFAAAGVQHIMVAPVNREVDNWDEVIEGAGRLAARI
Ga0307472_1006283553	3300032205	Hardwood Forest Soil	DRPESEFTISMRTHWNGKDEGELRERVAAYEEIGVQHILVAPVNREVDDWDEVIEGVGRLGAHRV
Ga0348332_125259051	3300032515	Plant Litter	SMRTHWNGKDEGELRARLAAYAEIGVQHVMVAPVNREIDDWDAVIDGTGRVAAG
Ga0335081_121600311	3300032892	Soil	WNGKDRGELTERIAGFAAVGVQHVMVHPLDRNIDDWHEVIDGVGAVAGR
Ga0335069_111939641	3300032893	Soil	ISMRTHWNGKDQGELRARVAAFEAAGVQHLLIAPVNREVDDWDEVIEGAGRMVVR
Ga0335074_109199321	3300032895	Soil	TISIRSHWNGKDVGELRERVAAYEAVGVQHVLIGPVNREVDDWDEVIEGAGKLVGR
Ga0335073_109727162	3300033134	Soil	QWNGRDPGELRDRLAGYAACGVEHVMVAPEDREVDDWDSVFEGAGRLVGG
Ga0335073_113321242	3300033134	Soil	RADFTISMRIQWNGKDQGELRDRLAAYEAVGVQHILVAPSNREVDDWDEVIEGAGRMVTS