NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F101795

Metagenome / Metatranscriptome Family F101795

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F101795
Family Type Metagenome / Metatranscriptome
Number of Sequences 102
Average Sequence Length 37 residues
Representative Sequence MPHMIPAPGAFAAGVAIFLIVLWDAFEAIILPRRVTRKF
Number of Associated Samples 88
Number of Associated Scaffolds 102

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 82.35 %
% of genes near scaffold ends (potentially truncated) 98.04 %
% of genes from short scaffolds (< 2000 bps) 91.18 %
Associated GOLD sequencing projects 82
AlphaFold2 3D model prediction Yes
3D model pTM-score0.53

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (76.471 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil
(34.314 % of family members)
Environment Ontology (ENVO) Unclassified
(30.392 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(57.843 % of family members)



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Multiple Sequence Alignments

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Alignment of all the sequences in the family.
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IDLabel
.2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48
1JGI25616J43925_101092571
2Ga0058897_107530892
3Ga0068963_12208982
4Ga0058899_122483851
5Ga0068864_1012968382
6Ga0066788_101046971
7Ga0075018_105081782
8Ga0066665_105109301
9Ga0066665_106188233
10Ga0073928_100346561
11Ga0073928_108945712
12Ga0099793_103903961
13Ga0099829_112875301
14Ga0127488_10272061
15Ga0150983_156211852
16Ga0150983_158922731
17Ga0137391_110963453
18Ga0137383_102451583
19Ga0137387_103805361
20Ga0137360_103473801
21Ga0134060_12492113
22Ga0137359_102133554
23Ga0137419_102618993
24Ga0137416_101358955
25Ga0137405_11569243
26Ga0167661_10827621
27Ga0182032_112649811
28Ga0182034_104916793
29Ga0182037_112209282
30Ga0187801_100228706
31Ga0187771_110371312
32Ga0066662_113163571
33Ga0179592_101186571
34Ga0210407_114470822
35Ga0210403_109076892
36Ga0210404_100389561
37Ga0210406_100033921
38Ga0210406_108319591
39Ga0210406_112609662
40Ga0210408_112878081
41Ga0210408_113328421
42Ga0210397_112877761
43Ga0210386_117508862
44Ga0210383_110434851
45Ga0210383_115915441
46Ga0210394_115639591
47Ga0210384_106240471
48Ga0210384_112796862
49Ga0187846_103022741
50Ga0210398_105935433
51Ga0210402_107733503
52Ga0210410_1000779411
53Ga0210409_100544856
54Ga0242655_101651472
55Ga0242655_101719161
56Ga0242662_102187822
57Ga0242662_102196732
58Ga0242662_102676552
59Ga0242654_102416521
60Ga0137417_14279427
61Ga0257158_10999032
62Ga0209161_101789641
63Ga0207742_1143311
64Ga0207858_10044034
65Ga0207858_10051711
66Ga0209179_10986782
67Ga0209528_10234861
68Ga0209076_10329034
69Ga0209009_11984772
70Ga0209588_10737641
71Ga0209118_100309211
72Ga0209118_11004522
73Ga0209248_100451183
74Ga0209180_102028133
75Ga0209180_102152631
76Ga0209701_101582623
77Ga0209590_100160061
78Ga0209488_112145582
79Ga0209006_102510281
80Ga0311352_103814401
81Ga0075405_112874481
82Ga0073994_100712121
83Ga0302308_105097292
84Ga0307483_10214592
85Ga0306917_115459401
86Ga0306918_114254262
87Ga0307477_108513622
88Ga0307475_108012403
89Ga0318546_106438621
90Ga0318529_101474951
91Ga0318511_103616141
92Ga0306919_110146602
93Ga0306921_105189081
94Ga0310912_107235013
95Ga0310916_111653071
96Ga0306922_108970993
97Ga0318570_104866821
98Ga0306924_120502181
99Ga0335070_105657341
100Ga0335081_125938941
101Ga0335077_107863601
102Ga0310914_118088131
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Transmembrane (alpha-helical) Signal Peptide: No Secondary Structure distribution: α-helix: 43.28%    β-sheet: 0.00%    Coil/Unstructured: 56.72%
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5101520253035MPHMIPAPGAFAAGVAIFLIVLWDAFEAIILPRRVTRKFExtracel.Cytopl.Sequenceα-helicesβ-strandsCoilSS Conf. scoreTM segmentsTopol. domains
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.53
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains


Neighboring Clusters of Orthologous Genes (COGs)



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Phylogeny

NCBI Taxonomy

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All Organisms
Unclassified
76.5%23.5%
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Associated Scaffolds





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Environmental Properties

Associated Habitat Types

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Bog Forest Soil
Freshwater Sediment
Iron-Sulfur Acid Spring
Watersheds
Vadose Zone Soil
Glacier Forefield Soil
Grasslands Soil
Peatlands Soil
Soil
Grasslands Soil
Soil
Soil
Hardwood Forest Soil
Soil
Tropical Peatland
Soil
Tropical Forest Soil
Forest Soil
Palsa
Biofilm
Switchgrass Rhizosphere
19.6%2.9%34.3%8.8%2.9%2.9%2.9%8.8%
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Associated Samples


Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
JGI25616J43925_1010925713300002917Grasslands SoilMPHMIPAPGAFIVGVAIFLIVVWDAFEAIILPRRVTRKFR
Ga0058897_1075308923300004139Forest SoilMPHMIPFPGAFVAGALIFLIVIWDAFEAIILPRRVTRKFR
Ga0068963_122089823300004618Peatlands SoilMLRMIPAPGVFIAGVLLFLLVAWDAFEAIILPRRVTRKFR
Ga0058899_1224838513300004631Forest SoilMPHMIPAPGAFIAGVAIFLIVLWDAFEAIILPRRVTRKFR
Ga0068864_10129683823300005618Switchgrass RhizosphereMPHMIPFPVPFAAGVAIFMIVLWDAFESVILPRRVTRK
Ga0066788_1010469713300005944SoilMIPVPGAFLTGIAIFFIVIWDAFESVILPRRVTRKFR
Ga0075018_1050817823300006172WatershedsMPHMIPVPGAFAVGVAIFLIVLWDAFEAIILPRRVTRKF
Ga0066665_1051093013300006796SoilMLTSPAAFLTGVAILIIVVWDAFEVIILPRRVTRRFRL
Ga0066665_1061882333300006796SoilMPHMIPAPGAFAAGVAIFLIVLWDAFEAIILPRRVTRKF
Ga0073928_1003465613300006893Iron-Sulfur Acid SpringMIPAPGAFLAGIAIFLIVVWDAFESIILPRRVTRKFR
Ga0073928_1089457123300006893Iron-Sulfur Acid SpringMTSAIPAPGEFLAGVMLFLIVVWDAFEAIILPRRV
Ga0099793_1039039613300007258Vadose Zone SoilMTSVIPYPGEFVVGVAAFLIVVWDAFEAIILPRRVT
Ga0099829_1128753013300009038Vadose Zone SoilMPHMIPTPGTFAAGVAIFLIVIWDAFEAIILPRRVTRKF
Ga0127488_102720613300010122Grasslands SoilMPHMIPAPGAFAAGVAIFLIVLWDAFEAIILPRRVTRK
Ga0150983_1562118523300011120Forest SoilMILAPGVFIAGVVIFLIVLWDAFEAIILPRRVTRK
Ga0150983_1589227313300011120Forest SoilMIPAPGAFLAGVAIFLIVLWDAFEAIILPRRVTRK
Ga0137391_1109634533300011270Vadose Zone SoilMPHMIPAPGAFVAGVAIFLIVLWEAFEAIILPRRVT
Ga0137383_1024515833300012199Vadose Zone SoilMQHMISAPGAFAAGVAIFLIVLWDAFEAIILPRRVTR
Ga0137387_1038053613300012349Vadose Zone SoilMPHMIPAPGAFALGVAIFLIVVWDAFEAVILPRRVT
Ga0137360_1034738013300012361Vadose Zone SoilMPHMIPAPGAFAAGVALFLIVLWDAFEAIILPRRVTRK
Ga0134060_124921133300012410Grasslands SoilMPHMIPAPGAFAAGVAIFLIVLWDAFEAIILPRRVTR
Ga0137359_1021335543300012923Vadose Zone SoilMTSVIPAPGEFLAGVALFLIVVWDAFEAIILPRRV
Ga0137419_1026189933300012925Vadose Zone SoilMQHMISAPGAFAAGVAIFLIVLWDAFEAIILPRRVTRKFR
Ga0137416_1013589553300012927Vadose Zone SoilMILAPGVFIAGVVIFLIVIWDAFEAIILPRRVTRK
Ga0137405_115692433300015053Vadose Zone SoilMPHMIPAPGAFIAGVATFAIVLWDAFEAIILPRRV
Ga0167661_108276213300015167Glacier Forefield SoilMLPSPAAFIAGVAILIIVVWDAFEAIILPRRVTRQFRLN
Ga0182032_1126498113300016357SoilMIPVPGAFVAGVAVFLVVAWDAFEAIILPRRETREFR
Ga0182034_1049167933300016371SoilMIPAPGAFIAGLVVFLVVAWDAFEAIILPRRVTRRFRL
Ga0182037_1122092823300016404SoilMLRMIPAPGVFVAGVVIFLVVVWDAFEAIILPRRV
Ga0187801_1002287063300017933Freshwater SedimentMPHMIPVPGAFAVGVAIFLIVLWDAFEAIILPRRVT
Ga0187771_1103713123300018088Tropical PeatlandMLRMIPVPGVFLAGIAVFLLVAWDAFEAIILPRRVTRKFRL
Ga0066662_1131635713300018468Grasslands SoilMPHMIPAPGAFAAGVAIFLIVVWDAFESIILPRRVTRKFR
Ga0179592_1011865713300020199Vadose Zone SoilMPHMIPAPGAFAAGVAIFVIVVWDAFEAIILPRRVTR
Ga0210407_1144708223300020579SoilMPHMIPSSGAFAAGAAIFLIVLWDAFEAIILPRRVT
Ga0210403_1090768923300020580SoilMPPMIPAPGAFLAGIAIFLIVVWDAFESIILPRRVTRKF
Ga0210404_1003895613300021088SoilMPHMLSAPGAFAVGVAIFLIVLWDAFEAIILPRRV
Ga0210406_1000339213300021168SoilMILAPGVFIAGVIIFLIVSWDAFEAIILPRRVTRK
Ga0210406_1083195913300021168SoilMPHMIPAPGAFIAGVAIFAIVLWDAFEAIILPRRVTRRFR
Ga0210406_1126096623300021168SoilMPSVLPAPGAFVAGAALFSIVLWDAFEAIILPRRVTRKFR
Ga0210408_1128780813300021178SoilMIPAPGAFAAGLAIFLIVIWDAFEAIILPRRVTRK
Ga0210408_1133284213300021178SoilMILAPGVFIAGVVIFLIVLWDAFEAIILPRRVTRKFR
Ga0210397_1128777613300021403SoilMQQLIPNPGAFVAGIVIFLVVVWDAFESIILPRRV
Ga0210386_1175088623300021406SoilMQHVIPNPGAFVAGIAIFLIVVWDAFEAIILPRRVTR
Ga0210383_1104348513300021407SoilMQHVIPVPGAFVAGILIFLIVVWDAFEAIILPRRVT
Ga0210383_1159154413300021407SoilMNTVSHMIPEPGVFLLGVALFMFVIWDAFEAIILPRRVTRKFRF
Ga0210394_1156395913300021420SoilMLAMIPVPGVFIAGVVLFFVVIWDAFEAIILPRRVTRK
Ga0210384_1062404713300021432SoilMILAPGVFIAGLVIFFIVSWDAFEAIILPRRVTRKFRLA
Ga0210384_1127968623300021432SoilMPHMIPLPVPFAAGVAIFMIVLWDAFESIILPRRVTRKF
Ga0187846_1030227413300021476BiofilmMPHMIPAPGAFAAGVAIFAIVVWDAFEAIILPRRVTRR
Ga0210398_1059354333300021477SoilMPHMIPAPAAFIAGVAIFVIVLWDAFEAIILPRRVT
Ga0210402_1077335033300021478SoilMILAPGVFIAGVVIFFIVSWDAFEAIILPRRVTRKFRL
Ga0210410_10007794113300021479SoilMILAPGVFIAGILIFLIVSWDAFEAIILPRRVTRKIRLTRI
Ga0210409_1005448563300021559SoilMPHMIPFPGAFVAGALIFLIVIWDAFEAIILPRRVTRKIRLT
Ga0242655_1016514723300022532SoilMILAPGVFIAGVVIFLIVLWDAFEAIILPRRVTRKFRL
Ga0242655_1017191613300022532SoilMPHMIQAPGAFIAGVAIFLIVLWDAFEAIILPRRVTRKFRF
Ga0242662_1021878223300022533SoilMILAPGVFIAGVVIFLIVIWDAFEAIILPRRVTRKFR
Ga0242662_1021967323300022533SoilMILAPGVFIAGILIFLTVTWDAFEAIILPRRVTRKVR
Ga0242662_1026765523300022533SoilMHQMIPAPGAFLAGVAIFLIVLWDAFEAIILPRRVTRKFR
Ga0242654_1024165213300022726SoilMILAPGVFIAGVAIFLIVSWDAFEAIILPRRVTRKFR
Ga0137417_142794273300024330Vadose Zone SoilMLTSPAAFLIGVAILIIVVWDAFEVIILPRRVTRVFG
Ga0257158_109990323300026515SoilMIPAPGAFIAGFAIFLIVLWDAFEAIILPRRVTRKF
Ga0209161_1017896413300026548SoilMPHMIPFPVPFAAGVAIFMIVLWDAFESIILPRRVT
Ga0207742_11433113300026800Tropical Forest SoilMLRMIPAPGVFIAGVVTFLVVLWDAFEAIILPRRV
Ga0207858_100440343300026909Tropical Forest SoilMLRMIPTPGVFIAGVAIFLVVVWDAFEAIILPRRVT
Ga0207858_100517113300026909Tropical Forest SoilMIPVPGAFIAGVAVFLVVAWDAFEAIILPRRVTRKF
Ga0209179_109867823300027512Vadose Zone SoilMTSVIPYPGEFAAGVAVFLVVVWDAFEAIILPRRV
Ga0209528_102348613300027610Forest SoilMTSVIPYPGEFAAGVALFLIVVWDAFEAIILPRRVTRK
Ga0209076_103290343300027643Vadose Zone SoilMPHMIPAPGAFAAGVAIFVIVVWDAFEAIILPRRVTRKF
Ga0209009_119847723300027667Forest SoilMLAMIPVPGVFIVGVALFFVVIWDAFEAIILPRRVTRKF
Ga0209588_107376413300027671Vadose Zone SoilMTSAISAPGEFLAGVALFLIVVWDAFEAIILPRRVTRKFR
Ga0209118_1003092113300027674Forest SoilMPHMISAPGAFAAGVAIFLIVLWDAFEAIILPRRVTRKFR
Ga0209118_110045223300027674Forest SoilMILAPGVFIAGVVIFLIVSWDAFEAIILPRRVTRKFRLARIY
Ga0209248_1004511833300027729Bog Forest SoilMNTVPHMIPEPGVFLLGVAMFMFVIWDAFEAIILPRRVTRKF
Ga0209180_1020281333300027846Vadose Zone SoilMIPVPGVFAAGVAIFLIVLWDAFEAIILPRRVTRKF
Ga0209180_1021526313300027846Vadose Zone SoilMPHMISAPGAFAAGVAIFLIVLWDAFEAIILPRRVTR
Ga0209701_1015826233300027862Vadose Zone SoilMPHMIPFLGAFAAGVALFLIVIWDAFEAIILPRRVTRR
Ga0209590_1001600613300027882Vadose Zone SoilMPHMIPAPGAFAAGVAIFLIVLWDAFEAIILPRRVTRKFR
Ga0209488_1121455823300027903Vadose Zone SoilMTSVIPYPGEFAAGVAVFLVVVWDAFEAIILPRRVTRKFRLT
Ga0209006_1025102813300027908Forest SoilMQHLIPAPGAFVAGIVIFLIVVWDAFESIILPRRVT
Ga0311352_1038144013300029944PalsaMPHMIPVPGIFILGVVIFLIVVWDAFEAIILPRRVTRKF
Ga0075405_1128744813300030847SoilMLRMIPAPGVFIAGVVIFLVVAWDAFEAIILPRRV
Ga0073994_1007121213300030991SoilMTSVIPYPGEFAADVALFLIVVWDAFEAIILPRRVTRKFR
Ga0302308_1050972923300031027PalsaMNTTPHIIPVPGVFILGVAVFWIVVWDAFEAIILPR
Ga0307483_102145923300031590Hardwood Forest SoilMIPAPGAFVAGVVVFLVVAWDSFEAIILPRRVTRKF
Ga0306917_1154594013300031719SoilMIPVPGAFVAGVAVFLVVAWDAFEAIILPRRVTRK
Ga0306918_1142542623300031744SoilMIPAPGAFIAGVVVFLVVAWDAFEAIILPRRVTRKFRLT
Ga0307477_1085136223300031753Hardwood Forest SoilMATAIPYPGVFAVGVALFLIVVWDAFEAIILPRRVTR
Ga0307475_1080124033300031754Hardwood Forest SoilMLSMPPAPGAFVAGAALFLIVLWDAFEAIILPRRV
Ga0318546_1064386213300031771SoilMLRMIPVPGIFIAGVAVFLVVVWDAFESVILPRRVTRRFR
Ga0318529_1014749513300031792SoilMIPAPGAFIAGVVVFLVVAWDAFEAIILPRRVTRKF
Ga0318511_1036161413300031845SoilMPHMIPAPGTFAAGAGLFLIVLWDAFESIILPRRVTRRF
Ga0306919_1101466023300031879SoilMIPVPGAFVAGVAVFLVVAWDAFEAIILPRRVTRKFR
Ga0306921_1051890813300031912SoilMLGMIPAPGVFLCGVAIFLIVLWDAFEAIILPRRVTRRF
Ga0310912_1072350133300031941SoilMLTSPAAFFLGVAILVVVVWDAFEVIILPRRVTRRF
Ga0310916_1116530713300031942SoilMIPAPGAFIAGLVVFLVVAWDAFEAIILPRRVTRRF
Ga0306922_1089709933300032001SoilMILAPGVFVAGIAIFLFVIWDAFEAIILPRRVTRKFRLARF
Ga0318570_1048668213300032054SoilMPHMIPAPGTFAAGVAVFLIVLWDAFESIILPRRVTRRF
Ga0306924_1205021813300032076SoilMIPVPGVFLCGVVLFLVVLWDAFEAIILPRRVTRKF
Ga0335070_1056573413300032829SoilMLRMIPVPGVFLAGIAVFLVVAWDAFEAIILPRRVTRR
Ga0335081_1259389413300032892SoilMILRPGVFLAGVAIFYLVAWDAFEAIILPRRVTRKIR
Ga0335077_1078636013300033158SoilMHGMIPHPLVFAAGFAIFVIVLWDAFESIILPRRVTR
Ga0310914_1180881313300033289SoilMIPVPGAFVAGVAVFLVVAWDAFEAIILPRRVTRKFRL


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