Basic Information | |
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Family ID | F101789 |
Family Type | Metagenome |
Number of Sequences | 102 |
Average Sequence Length | 67 residues |
Representative Sequence | MSGILKSTLQLVAEWRALLPPSGGGVLSPTAVALLGATGLYGGQKPKDDSAASDANILNSALGGEFGA |
Number of Associated Samples | 69 |
Number of Associated Scaffolds | 102 |
Quality Assessment | |
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Transcriptomic Evidence | No |
Most common taxonomic group | Bacteria |
% of genes with valid RBS motifs | 90.10 % |
% of genes near scaffold ends (potentially truncated) | 99.02 % |
% of genes from short scaffolds (< 2000 bps) | 96.08 % |
Associated GOLD sequencing projects | 62 |
AlphaFold2 3D model prediction | No |
Hidden Markov Model |
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Most Common Taxonomy | |
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Group | Bacteria (59.804 % of family members) |
NCBI Taxonomy ID | 2 |
Taxonomy | All Organisms → cellular organisms → Bacteria |
Most Common Ecosystem | |
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GOLD Ecosystem | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (44.118 % of family members) |
Environment Ontology (ENVO) | Unclassified (77.451 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) (50.980 % of family members) |
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Full Alignment |
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Alignment of all the sequences in the family. |
IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80.82.84.86. |
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Predicted Topology & Secondary Structure | |||||
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Classification: | Fibrous | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 48.53% β-sheet: 0.00% Coil/Unstructured: 51.47% |
Feature Viewer | |||||
Position : 0 Zoom : x 1 Enter the variants Position Original Variant |
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Visualization |
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All Organisms Unclassified |
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Visualization |
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Watersheds Tropical Forest Soil Soil Soil Soil Soil Hardwood Forest Soil Green-Waste Compost Tropical Forest Soil Corn, Switchgrass And Miscanthus Rhizosphere |
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Protein ID | Sample Taxon ID | Habitat | Sequence |
prs_02501090 | 2070309004 | Green-Waste Compost | MKEVAMSGILKSTLQLVAEWRALLPPSGGGVLSPTAVALLGATGLYGGQKPKDDSAASDANILNSALGGEFGA |
INPgaii200_06851802 | 2228664022 | Soil | VSSLLQSTLHLFAGWRSLLTPSDGAILSPTAIALLGTTGLYGGQKPKDDTAASDANILNTALGG |
Ga0062593_1013180923 | 3300004114 | Soil | MSSILQSTLHLFAGWRSLLTPSGGAVLSPTVIALMGATGLYGGQQPKDDAAASDANILN |
Ga0066395_104508061 | 3300004633 | Tropical Forest Soil | MSGILKSTLQLVAEWRALLPPSGGGVLSPTAVALLGATGLYGGQQPKGDAAASDAS |
Ga0066675_105092612 | 3300005187 | Soil | MSSLLQSTLHLFAGWRSLLTPSDGAILSPTAIALLGTTGLYGGQKPKDDTAASDANILNTALGGE |
Ga0070708_1003008642 | 3300005445 | Corn, Switchgrass And Miscanthus Rhizosphere | MSSILQSTLHLFAGWRSLMTPSGGAALSPTAIALMGATGLYGQQPKDDTAASDANIL |
Ga0070707_1008361981 | 3300005468 | Corn, Switchgrass And Miscanthus Rhizosphere | MKEEVIMSSILQSTLHLFAGWRSLLTPSGGAVLSPTAIALMGATGLYGGQQPKDDTA |
Ga0070698_1013091311 | 3300005471 | Corn, Switchgrass And Miscanthus Rhizosphere | MSGILKSTLQLVAEWRALLPPSGGDVLSPTAVALLGVTGLYGGQKPKDDSAASDANILNSALSGEFGAV |
Ga0066705_102765992 | 3300005569 | Soil | MSSLLQSTLHLFAGWRSLLTPSDGAILSPTAIALLGTTGLYGGQKPKDDSAASDANILNSALGGEFGAVA |
Ga0066903_1027748432 | 3300005764 | Tropical Forest Soil | MREEVVISSILQSTLHLFVGWRSLLTPPGGAVLSPTAIALMGATGLYGGQQPKGDAAASDASI |
Ga0066903_1076756101 | 3300005764 | Tropical Forest Soil | MSEILKSTLQLVAEWRALLPPSGGGVLSPTAVAVLGVTGLYGGQKPEDDAAASDANILNSALGGEFGAVVAYQ |
Ga0075018_106059921 | 3300006172 | Watersheds | MSGILKSTLQLVAEWRALLPPSGGDVLSPTAVALLGVTGLYGGQKPKDDSAASDANILNSALGGEFGAVLAYQLA |
Ga0126374_115707512 | 3300009792 | Tropical Forest Soil | MKEVAMSGILKSTLQLFDEWRSLLPHSGGAVLSPTAIALLGATGLYGGQQPKNDTAASDVSILN |
Ga0126384_114285602 | 3300010046 | Tropical Forest Soil | MKEVAMSGILKSTLQLVAEWRALLTPSGGGVLSPTAVALLGATGLYGGQKPKDDSVASDANILNSALGGEFGAVAAYQ |
Ga0126382_111477181 | 3300010047 | Tropical Forest Soil | MSGILQSTFHLFAGWRSLLTPSGGGVLSPTAIALLGATGLYGGQQPKNDTAASDVSILNTALGGEF |
Ga0126382_123444861 | 3300010047 | Tropical Forest Soil | MKEVAMSGILKSTLQLVAEWRALLPPSGGGVLSPTAVALLGVTGLYGGQKPKDDSAASDANILNSALGGEF |
Ga0126372_109163712 | 3300010360 | Tropical Forest Soil | MKEVAMPGILKSTLQLVAEWRALLPPSGGGVLSPTAVALLGATGLYGGQQPKGDAAASDASILNSAL |
Ga0126372_114765802 | 3300010360 | Tropical Forest Soil | MSSILQSTLHFFTRWRSLVAPSGGAVLSPTAIALLGATGLYGGQKPKDDSAASDADILNT |
Ga0126381_1034318171 | 3300010376 | Tropical Forest Soil | MREEVVMSSILQSMLHLYAGGRSLLPSGGAVLSPTAIAPMGATGLYGGQQPKDDTVASDA |
Ga0126369_108709842 | 3300012971 | Tropical Forest Soil | MKEEIVMSSILQSTLHLFAGWRSLLTPSAATALSPTAIALMGATGLYGGQQPSDDAAASDVSILNTALGGEF |
Ga0126369_112837911 | 3300012971 | Tropical Forest Soil | MKAEVVMSSILQSTLHLFAGWRSLLTPSGGAVLSPTAIALMGATGLYGGQQPKGDAAASDASILNSALG |
Ga0182041_117042531 | 3300016294 | Soil | MSGILKSTLQLVAEWRALLQPSGGGVLSPTAVALLGVTGLYGGQKPKDDSAASDANILN |
Ga0182033_117213881 | 3300016319 | Soil | MSGILKSTLQLVAEWRALLPPSGGGVLSPTAVTLLGVTGLYGGQKLKDDSAASDANILNSALGGEFGAVVAYQ |
Ga0182033_117844991 | 3300016319 | Soil | MSGILKSSLQLVAEWRALLPPSGGGVLSPTSVALLGVTGLYGGQKPKDDSAASDANILNSALG |
Ga0182032_110445152 | 3300016357 | Soil | MSGILKSTLQLVAEWRALLPPSGGGVLSPTAVTLLGVTGLYGGQKLKDDSAASDANILNSALGGEFGAVVAYQL |
Ga0182034_114386101 | 3300016371 | Soil | MSSILQSMLHLYAGGRSLLTPSSGAVLSPTAIALMGATGLYGGQKPKDDAAASDANILNSALGGEFGAVVAYQLAAD |
Ga0182040_104734731 | 3300016387 | Soil | MSSILQSTLHFFTGWRSLLAPSGGAVLSPTAIALLGATGLYGGQKPKDDSAASDADILNTGLGG |
Ga0182037_109443441 | 3300016404 | Soil | MSGILKSTLQLVAEWRALLPPSGGGVLSPTAVALLGATGLYGGQKPKDDSAASDA |
Ga0182039_106234092 | 3300016422 | Soil | MSSILLSMLHLYAGGRSLLTPSGGAVLSPTAIALLGGTGLYCGQQPKDDTAASDVNILNSGLGGE |
Ga0182038_111647861 | 3300016445 | Soil | MSGILQSTFHLFAGWRSLLTPSGGGVLSPTAIGLLGATGLYGGQQPKNDTAASDVSILNTALG |
Ga0126371_134724071 | 3300021560 | Tropical Forest Soil | MSSILQSTLHLFAGWRSLLTPSGGTALSPTAIGLMGATGLYGGQQPNDDAAASDASIL |
Ga0318541_103382231 | 3300031545 | Soil | MSGILKWTLQLVAEWRALLPPSGGGVLSPTAVGLLGATGLYGGQKPKDDSAASDANILN |
Ga0318538_103150581 | 3300031546 | Soil | MSSILQSTLHLFAGWRSLLTPSGGAVLSPTAIALMGATGLYGGQQPKGDAAASDASILN |
Ga0318538_104763502 | 3300031546 | Soil | MSGILKSTLQLVAEWRALLPPSGGGVLSPTAVTLLGVTGLYGGQKLKDDSAASDANILNSALGGEFGAVVA |
Ga0318515_101421681 | 3300031572 | Soil | MSGILKSTLQLVAEWRALLPPSGGGVLSPTAVALLRVTGLYGGQKPKDDSAASDANILNSALGGEFGAVVAYQLAAD |
Ga0310915_109942621 | 3300031573 | Soil | MSSILQSTLHFFTGWRSLVAPSGGAVLSPTAIALLGATGLYGGQKPKDDSAASDADILNT |
Ga0318555_104997131 | 3300031640 | Soil | MSSILQSTLHFFTGWRSLVAPSGGAVLSPTAIALLGATGLYGGQMPKDDSAASDADILNTGLGGEFGAVAAYQ |
Ga0318572_106207373 | 3300031681 | Soil | MSSILQSMLHLYAGGRSLLTPSSGAVLSPTAIALMGATGLYGGQKPKDDSAASDANILNSALGGEFGAVA |
Ga0318572_109832841 | 3300031681 | Soil | MSSILQSTLQLFAGWRSLLTPSSGTVLSPTAIALMGATGLYRGQQPNDDAAASDASI |
Ga0306917_108177432 | 3300031719 | Soil | MSGILKSTLQLVAEWRALLPPSGGGVLSPTAVALLGATGLYGGKKPKDDSAASDANILNSALGG |
Ga0306917_108701792 | 3300031719 | Soil | MSGILKSTLQLVAEWRALLPPSGGGVLSPTAVALLGATGLYGGQKEKDDSAASDANILNSALGGEFGAV |
Ga0306917_112508901 | 3300031719 | Soil | MSGILTSTLQLVAEWRALLPPSGRGVLSPTAVALLGVTGLYGGQKPKDDSAASDANILNSALGGEFGAVVAYQLAADSG |
Ga0306917_113258601 | 3300031719 | Soil | MSSILQSTLQLFAGWRSLLTPSSGTVLSPTAIALMGATGLYRGQQPNDDAAASDASILNAALGGEFGAVA |
Ga0318501_104462152 | 3300031736 | Soil | MSSILQSTLHLYAGWRSRLTPSGAGVLSPTAIALMGVTGLYGAQKPKDDAAASDANILNT |
Ga0306918_115189431 | 3300031744 | Soil | MSSILQSTLHFFTGWRSLVAPSGGAVLSPTAIALLGATGLYGGQMPKDDSAASDADILNTGLGGE |
Ga0318537_101809282 | 3300031763 | Soil | MSSILQSTLHLFAGWRSLLTPSGGAVLSPTAIALMGATGLYGGQQPKDDTAASDANILNS |
Ga0318554_107621561 | 3300031765 | Soil | MSGILTSTLQLVAEWRALLPPSGRGVLSPTAVALLGVTGLYGGQKPKDDSAASDANILNSALGGEFGAVVAY |
Ga0318554_108004842 | 3300031765 | Soil | MSGILQSTFHLFAGWRSLLTPSGGGVLSPTAIGLLGATGLYGGQQPKNVTAASDVSIL |
Ga0318509_100334893 | 3300031768 | Soil | MSSILQSTLHFFTGWRSLVAPSGGAVLSPTAIALLGATGLYGGQMPKDDSAASDADILNTGLGGEFGAVAA |
Ga0318547_105793291 | 3300031781 | Soil | MSGILKSTLQLVAEWRALLTPSGGGVLSPTAFALLGATGLYGGQKPKDDSAASDANILNSALGGEFGAVVAYQLAVDSGLL |
Ga0318547_106866572 | 3300031781 | Soil | MSGILKSTLQLVAEWRALLPPSGGGVLSPTAVALLGATGLYGGQKPKDDSAASDANILNSALGG |
Ga0318557_105101651 | 3300031795 | Soil | MSSILQSTLHLFAGWRSLLTPSGGAVLSPTAIALMGATGLYGGQQPKDDTAASDANILNSALGGEFGAVVAYQL |
Ga0318550_103360692 | 3300031797 | Soil | MSGILKSTLQLVAEWRALLTPSGGGVLSATAVAFLGATGRYGGQKPKDDSAASDANILNSALGGEFGAVVA |
Ga0318497_101993961 | 3300031805 | Soil | MSSILQSTLHFFTGWRSLLAPSGGAVLSPTAIALMGATGLYGGQKPKDDSAPSDANILNSALGGEFGAVAAYQ |
Ga0318497_106425772 | 3300031805 | Soil | MSGILKSTLQLVAEWRALLPPSGGGVLSPTAVTLLGVTGLYGGQKPKDDSAASDANILNS |
Ga0318568_109960691 | 3300031819 | Soil | MSGILQSTFHLFAGWRSLLTPSGGGVLSPTAIGLLGATGLYGGQQPKNDTAASDVSILNTALGGEFGAVVAY |
Ga0310917_109035391 | 3300031833 | Soil | MSSILQSTLHLFSGWRSLLAPSGGAVLSPTAIALLGATGLYGGQKPKDDAAASDADILNTGLGGE |
Ga0318512_103888001 | 3300031846 | Soil | MSSILQSTLYLFAGWRSLLTPSGGAVLSPTAIALMGATGLYGGQQPKDDTAASDANILN |
Ga0306919_100156001 | 3300031879 | Soil | MSSILQSTLHFFTGWRSLLAPSGGAVLSPTAIALLGATGLYGGQKPKDDPAA |
Ga0306925_104455404 | 3300031890 | Soil | MSGILKSTLQLVAEWRALLQPSGGGVLSPTAVALLGVTGLYGGQKPKDDSAASDANILNSALGGEFGAVVAYQLAA |
Ga0306925_106144351 | 3300031890 | Soil | MSGILKSTLQLVAEWRALLPPSGGGVLSPTAVALLGATGLYGGQKEKDDSAASDANILN |
Ga0306925_108374321 | 3300031890 | Soil | MSGILKSTLQLVAEWRALLPPSGGGVLSPTAVALLGATGLYSTQKPKDDAAASDANILNSALGGEFGAVVAYQ |
Ga0306925_114366362 | 3300031890 | Soil | MSSILQSTLHLFAGWRSLLTPSGGAVLSPTAIALMGATGLYGGQQPKDDTAASDANILNSGLGG |
Ga0306925_122422871 | 3300031890 | Soil | MSSILQSTLHLFAGWRSLLTPSGGAVLSPTAIALMGATGLYGGQQPKDDTAASDANILNSALGGEFGAVVAY |
Ga0318536_104273591 | 3300031893 | Soil | MSGILKSTLQLVAEWRALLTPSGGGVLSPTAFALLGATGLYGGQKPKDDSAASDANILNSALGGEFGAVVAYQ |
Ga0318551_105543801 | 3300031896 | Soil | MSSILQSTLHLFAGWRSLLTPSGGAVLSPTAIALMGATGLYGGQQPKDDTAASDANILNSGLGGEFGAVVA |
Ga0318520_106944531 | 3300031897 | Soil | MSSILQSTLHFFTGWRSLLAPSGGAVLSPTAIALFGATGLYGGQKPKDDSAASDADILNTALGGEFGAVSAYQ |
Ga0306923_113791931 | 3300031910 | Soil | MSGILQSTFHLFAGWRSLLTRSGGGVLSPTAIALLGATGLYGGQQPKNDTAASDVSILNTAL |
Ga0306923_115954371 | 3300031910 | Soil | MSGILKSTLQLVAEWRALLPPSGGGVLSPTAVTLLGVTGLYGGQKLKDDSAASDANILNSALGGEFGAVVAYQLAADSG |
Ga0306921_112872391 | 3300031912 | Soil | MSSILQSTLHLFAGWRSLLTPSGGAVLSPTAIALMGATGLYGGQQPKDDTAASDANILNSALGGEFGAVVAYQLA |
Ga0306921_127419081 | 3300031912 | Soil | MSGILKSTLQLVAEWRALLPPSGGGVLSPTAVALLGATGLYGGQNQKDDSAASDANI |
Ga0310912_103066492 | 3300031941 | Soil | MSGILKSTLQLVAEWRALLPPSGGGVLSPTAVALLGATGLYGGQKEKDDSAASDA |
Ga0310916_110289881 | 3300031942 | Soil | MSGILKSSLQLVAEWRALLPPSGGGVLSPTSVALLGVTGLYGGQKPKDDSAASDANILNSALGGEFGAVVAYQLAADSGL |
Ga0310916_112331442 | 3300031942 | Soil | MSGILKSTLQLVAEWRALLPPSGGGVLSPTAVALLGATGLYGGQKEKDDSAASDANILNSALGGEFGAVVAYQL |
Ga0310913_106295161 | 3300031945 | Soil | MSSILQSTLHLFAGWRSLLTPSGGAVLSPTAIALMGATGLYGGQQPKDDTAASDANILNSALGGEFGAVVAYQLAADS |
Ga0310913_110489871 | 3300031945 | Soil | MSGILKSTLQLVAEWRALLPPSGGGVLSPTAVALLGATGLYGGQKEKDDSAASDANILNSALGGEFG |
Ga0310910_104598692 | 3300031946 | Soil | MSGILQSTFHLFAGWRSLLTPSGGGVLSPTAIALLGATGLYGGQQPKNDTAASDVSILNSALG |
Ga0310910_106172572 | 3300031946 | Soil | MSGILKSTLQLVAEWRALLPPSGGGVLSPTAVTLLGVTGLYGGQKLKDDSAASDANILNSALGGEFGAVVAYQLAADS |
Ga0310909_112833421 | 3300031947 | Soil | MSGILKSSLQLVAEWRALLPPSGGGVLSPTSVALLGVTGLYGGQKPKDDSAASDANILN |
Ga0318531_102924841 | 3300031981 | Soil | MSSILQSTLHIYAGWRSLLTPSSGAVLSPTAIALMGATGLYGGQKPKDDSAASDANILNSALGGEFGAVAAY |
Ga0306922_102997051 | 3300032001 | Soil | MSGILKSTLQLVAEWRALLTPSGGGVLSPTAFALLGATGLYGGQKPKDDSAASDANILNSALGGEFGAVVAYQL |
Ga0306922_115132501 | 3300032001 | Soil | MSGILTSTLQLVAEWRALLPPSGGGVLSPTAVALLGVTGLYGGQKPKDDSAASDANILNSALGGEFG |
Ga0310911_107462421 | 3300032035 | Soil | MSGILKSTLQLVAEWRALLPPSGGGVLSPTAVALLGATGLYGGQKPKDDSAASDANILNSALGGEFGAVVAYQLAADS |
Ga0318559_103865581 | 3300032039 | Soil | MSGILKSTLQLVAEWRALLPPSGGGVLSPTAVTLLGVTGLYGGQKLKDDSAASDANILNSALGAESSFSFC |
Ga0318545_103220971 | 3300032042 | Soil | MSGILKSTLQLVAEWRALLPPSGGGVLSPTAVALLGATGLYGGQKPKDDSAASDANILNSALGGEFGAVVAYQLAAD |
Ga0318575_102002901 | 3300032055 | Soil | MSSILQSTLHFFTGWRSLVASSGGAVLSPTAIALLGATGLYGGQKPKDDSAASDADILNTGLGGEFGAVA |
Ga0318533_110799351 | 3300032059 | Soil | MSGILKSSLQLVAEWRALLPPSGGGVLSPTSVALLGVTGLYGGQKPKDDSAASDANILNSALGGEFGAVVAYQ |
Ga0306924_105169861 | 3300032076 | Soil | MSGILKSSLQLVAEWRALLPPSGGGVLSPTSVALLGVTGLYGGQKPKDDSAASDANILNSALGGEF |
Ga0306924_105315483 | 3300032076 | Soil | MSSILQSTLHFFTGWRSLVAPSGGAVLSPTAIALLGATGLYGGQMPKDDSAASDADILNT |
Ga0306924_107571001 | 3300032076 | Soil | MSSILQSMLHLYAGGRSLLTPSGGAVLSPTAIALMGATGLYGGQQPKDDAAASD |
Ga0306924_112132751 | 3300032076 | Soil | MSGILKSTLQLVAEWRALLPPSGGGVLSPTAVALLGATGLYGGQKPKDDAAASDANILNSALGGEFGAVVA |
Ga0306924_115784242 | 3300032076 | Soil | MSSILQSTLHLFAGWRSLLTPSGGAVLSPTAIALMGATGLYGGQQPKDDTAASDANI |
Ga0318577_102486291 | 3300032091 | Soil | MSSILQSTLHLFAGWRSLLTPSGGAVLSPTAIALMGATGLYGGQQPKDDTAASDANILNTALGGEFGAVVAYK |
Ga0318577_103340171 | 3300032091 | Soil | MSSILQSTLHFFTGWRSLLAPSGGAVLSPTAIALLGATGLYGGQKPKDDSAASDADILNTALG |
Ga0307471_1012812502 | 3300032180 | Hardwood Forest Soil | MSGILKSTLQLVAEWRALLPPSGGDVLSPTAVALLGVTGLYGGQKPKDDSAASDANILNSALGGEFGAVV |
Ga0306920_1003953111 | 3300032261 | Soil | MSGILKSTLQLVAEWRALLPPSGGGVLSPTAVALLGATGLYGGQKPKDDSAASDANILNSALGGEFGAVVA |
Ga0306920_1009564281 | 3300032261 | Soil | MSGILKSTLQLVAEWRALLPPSGGGVLSPTAVALLGVTGLYGGQKPKDDSAASDANILNSALGGEFGAVVAYQLAADSG |
Ga0306920_1022909562 | 3300032261 | Soil | MSSILQSTLHLFAGWRSLLTPSGGAVLSPTAIALMGATGLYGGQEPKDDTAASDANILNSALGGEFG |
Ga0310914_105428131 | 3300033289 | Soil | MSGILKSTLQLVAEWRALLPPSGGGVLSPTAVALLGATGLYGGQKPKDDSAASDANILNSALGGEFGA |
Ga0310914_105625812 | 3300033289 | Soil | MSGILKSTLQLVAEWRALLTPSGGGVLSPTAFALLGATGLYGGQKPKDDSAASDANILNSALGGEFGAVVAYQLAADSG |
Ga0310914_106488152 | 3300033289 | Soil | MSSILQSTLHFFTGWRSLLAPSGGAVLSPTAIALLGATGLYGGQKPKDDSAASDADILNSAL |
Ga0310914_110901951 | 3300033289 | Soil | MSGILKSTLQLVAEWRALLQPSGGGVLSPTAVALLGVTGLYGGQKPKDDSAASDANILNSALGGEFGAVVAYQLAADSG |
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