Metagenome / Metatranscriptome Family F101764

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F101764
Family Type	Metagenome / Metatranscriptome
Number of Sequences	102
Average Sequence Length	69 residues
Representative Sequence	MTSKLLGLAVTLGLPTMLAAQTPQIPNEHASDRGKAMVALHSQGAAHRATHRRGDVVAVPHTRNPNAAT
Number of Associated Samples	89
Number of Associated Scaffolds	102

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	97.06 %
% of genes near scaffold ends (potentially truncated)	100.00 %
% of genes from short scaffolds (< 2000 bps)	91.18 %
Associated GOLD sequencing projects	79
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.29

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (100.000 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil (33.333 % of family members)
Environment Ontology (ENVO)	Unclassified (66.667 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (79.412 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 42.27% β-sheet: 0.00% Coil/Unstructured: 57.73%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.29
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.29
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 102 Family Scaffolds
PF04542	Sigma70_r2	76.47
PF08281	Sigma70_r4_2	8.82
PF08267	Meth_synt_1	1.96
PF08712	Nfu_N	0.98
PF16561	AMPK1_CBM	0.98
PF13847	Methyltransf_31	0.98
PF02922	CBM_48	0.98

COG ID	Name	Functional Category	% Frequency in 102 Family Scaffolds
COG0568	DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)	Transcription [K]	76.47
COG1191	DNA-directed RNA polymerase specialized sigma subunit	Transcription [K]	76.47
COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	Transcription [K]	76.47
COG4941	Predicted RNA polymerase sigma factor, contains C-terminal TPR domain	Transcription [K]	76.47
COG0620	Methionine synthase II (cobalamin-independent)	Amino acid transport and metabolism [E]	1.96

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	70.59 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	2.94 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Gemmatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	70.59 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1.96 %
Cyanobacteria/Melainabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group	0.98 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
unclassified Gemmatimonadetes	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes	63.73 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1.96 %
Cyanobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	0.98 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	63.73 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1.96 %
Cyanobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	0.98 %
Unclassified	root	N/A	0.00 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300002558\|JGI25385J37094_10096234	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	887	Open in IMG/M
3300002908\|JGI25382J43887_10209417	All Organisms → cellular organisms → Bacteria	931	Open in IMG/M
3300002909\|JGI25388J43891_1006572	All Organisms → cellular organisms → Bacteria	2291	Open in IMG/M
3300002909\|JGI25388J43891_1026978	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	962	Open in IMG/M
3300005166\|Ga0066674_10129888	All Organisms → cellular organisms → Bacteria	1182	Open in IMG/M
3300005166\|Ga0066674_10284438	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	778	Open in IMG/M
3300005171\|Ga0066677_10845407	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	504	Open in IMG/M
3300005178\|Ga0066688_10529908	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	757	Open in IMG/M
3300005180\|Ga0066685_10435812	All Organisms → cellular organisms → Bacteria	910	Open in IMG/M
3300005180\|Ga0066685_10949363	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	571	Open in IMG/M
3300005181\|Ga0066678_11042056	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	528	Open in IMG/M
3300005187\|Ga0066675_10684709	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	770	Open in IMG/M
3300005434\|Ga0070709_11360775	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	574	Open in IMG/M
3300005447\|Ga0066689_10946270	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	531	Open in IMG/M
3300005468\|Ga0070707_100097062	All Organisms → cellular organisms → Bacteria	2854	Open in IMG/M
3300005518\|Ga0070699_100946094	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	789	Open in IMG/M
3300005558\|Ga0066698_10416479	All Organisms → cellular organisms → Bacteria	921	Open in IMG/M
3300005576\|Ga0066708_10083893	All Organisms → cellular organisms → Bacteria	1862	Open in IMG/M
3300006173\|Ga0070716_100207384	All Organisms → cellular organisms → Bacteria	1307	Open in IMG/M
3300006755\|Ga0079222_10100836	All Organisms → cellular organisms → Bacteria	1516	Open in IMG/M
3300006755\|Ga0079222_11910616	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	579	Open in IMG/M
3300006791\|Ga0066653_10212285	All Organisms → cellular organisms → Bacteria	983	Open in IMG/M
3300006791\|Ga0066653_10356874	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	742	Open in IMG/M
3300006796\|Ga0066665_10002157	All Organisms → cellular organisms → Bacteria	9576	Open in IMG/M
3300006804\|Ga0079221_10379907	All Organisms → cellular organisms → Bacteria	866	Open in IMG/M
3300006806\|Ga0079220_10022573	All Organisms → cellular organisms → Bacteria	2679	Open in IMG/M
3300006954\|Ga0079219_11774687	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	576	Open in IMG/M
3300007258\|Ga0099793_10253604	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	850	Open in IMG/M
3300009012\|Ga0066710_101972646	All Organisms → cellular organisms → Bacteria	868	Open in IMG/M
3300009012\|Ga0066710_102631064	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	722	Open in IMG/M
3300010078\|Ga0127487_134677	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	514	Open in IMG/M
3300010089\|Ga0127454_1039926	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	512	Open in IMG/M
3300010106\|Ga0127472_1130902	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	585	Open in IMG/M
3300010111\|Ga0127491_1069971	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	500	Open in IMG/M
3300010113\|Ga0127444_1077731	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	514	Open in IMG/M
3300010124\|Ga0127498_1035117	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	561	Open in IMG/M
3300010126\|Ga0127482_1094390	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	562	Open in IMG/M
3300010132\|Ga0127455_1005177	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	524	Open in IMG/M
3300010140\|Ga0127456_1029053	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	538	Open in IMG/M
3300010141\|Ga0127499_1094125	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	513	Open in IMG/M
3300010142\|Ga0127483_1203530	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	530	Open in IMG/M
3300010301\|Ga0134070_10472560	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	505	Open in IMG/M
3300010303\|Ga0134082_10461631	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	550	Open in IMG/M
3300010323\|Ga0134086_10113198	All Organisms → cellular organisms → Bacteria	967	Open in IMG/M
3300010335\|Ga0134063_10014554	All Organisms → cellular organisms → Bacteria	3153	Open in IMG/M
3300010335\|Ga0134063_10722765	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	516	Open in IMG/M
3300010373\|Ga0134128_10484393	All Organisms → cellular organisms → Bacteria	1379	Open in IMG/M
3300012204\|Ga0137374_11032168	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	591	Open in IMG/M
3300012206\|Ga0137380_11329552	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	604	Open in IMG/M
3300012206\|Ga0137380_11496869	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	559	Open in IMG/M
3300012207\|Ga0137381_11787128	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	504	Open in IMG/M
3300012207\|Ga0137381_11798477	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	502	Open in IMG/M
3300012211\|Ga0137377_10615761	All Organisms → cellular organisms → Bacteria	1022	Open in IMG/M
3300012349\|Ga0137387_10549231	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	838	Open in IMG/M
3300012349\|Ga0137387_10846010	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	662	Open in IMG/M
3300012349\|Ga0137387_10922999	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	630	Open in IMG/M
3300012351\|Ga0137386_10394785	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	996	Open in IMG/M
3300012364\|Ga0134027_1017764	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	514	Open in IMG/M
3300012371\|Ga0134022_1200695	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	555	Open in IMG/M
3300012373\|Ga0134042_1135105	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	554	Open in IMG/M
3300012383\|Ga0134033_1146367	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	508	Open in IMG/M
3300012386\|Ga0134046_1227269	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	597	Open in IMG/M
3300012389\|Ga0134040_1269698	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	553	Open in IMG/M
3300012391\|Ga0134035_1181557	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	581	Open in IMG/M
3300012392\|Ga0134043_1185286	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	537	Open in IMG/M
3300012398\|Ga0134051_1179800	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	588	Open in IMG/M
3300012400\|Ga0134048_1200793	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	785	Open in IMG/M
3300012409\|Ga0134045_1399759	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	575	Open in IMG/M
3300012410\|Ga0134060_1485323	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	571	Open in IMG/M
3300012917\|Ga0137395_11050270	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	580	Open in IMG/M
3300012927\|Ga0137416_10257975	All Organisms → cellular organisms → Bacteria	1427	Open in IMG/M
3300012975\|Ga0134110_10258792	All Organisms → cellular organisms → Bacteria	743	Open in IMG/M
3300012976\|Ga0134076_10484531	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	563	Open in IMG/M
3300015054\|Ga0137420_1415800	All Organisms → cellular organisms → Bacteria	978	Open in IMG/M
3300015358\|Ga0134089_10209419	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	787	Open in IMG/M
3300015358\|Ga0134089_10277432	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	691	Open in IMG/M
3300017654\|Ga0134069_1392713	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	501	Open in IMG/M
3300017656\|Ga0134112_10262621	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	687	Open in IMG/M
3300018433\|Ga0066667_10364366	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1155	Open in IMG/M
3300019789\|Ga0137408_1384606	All Organisms → cellular organisms → Bacteria	2287	Open in IMG/M
3300024187\|Ga0247672_1076183	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	574	Open in IMG/M
3300024219\|Ga0247665_1005251	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1371	Open in IMG/M
3300026306\|Ga0209468_1038402	All Organisms → cellular organisms → Bacteria	1651	Open in IMG/M
3300026307\|Ga0209469_1055745	All Organisms → cellular organisms → Bacteria	1232	Open in IMG/M
3300026310\|Ga0209239_1124206	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1066	Open in IMG/M
3300026316\|Ga0209155_1040974	All Organisms → cellular organisms → Bacteria	1836	Open in IMG/M
3300026326\|Ga0209801_1018107	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	3493	Open in IMG/M
3300026329\|Ga0209375_1006921	All Organisms → cellular organisms → Bacteria	7375	Open in IMG/M
3300026331\|Ga0209267_1188215	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	805	Open in IMG/M
3300026335\|Ga0209804_1207912	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	803	Open in IMG/M
3300026335\|Ga0209804_1234122	All Organisms → cellular organisms → Bacteria	717	Open in IMG/M
3300026342\|Ga0209057_1139841	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	832	Open in IMG/M
3300026523\|Ga0209808_1161759	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	836	Open in IMG/M
3300026530\|Ga0209807_1219687	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	652	Open in IMG/M
3300026538\|Ga0209056_10051618	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	3675	Open in IMG/M
3300026540\|Ga0209376_1338357	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	572	Open in IMG/M
3300026542\|Ga0209805_1078739	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1594	Open in IMG/M
3300027725\|Ga0209178_1153070	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	797	Open in IMG/M
3300027765\|Ga0209073_10361301	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	588	Open in IMG/M
3300027775\|Ga0209177_10092795	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	943	Open in IMG/M
3300027882\|Ga0209590_10507080	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	779	Open in IMG/M
3300032180\|Ga0307471_100328317	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1630	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	100.00%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	100.00%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	94.12%
Loam	Environmental → Terrestrial → Soil → Loam	5.88%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	50.00%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	33.33%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	7.84%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	3.92%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	2.94%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	1.96%

Habitat	Taxonomy	Distribution
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	33.33%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	25.49%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	15.69%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	7.84%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	7.84%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.96%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	1.96%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.98%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.98%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300002558	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_40cm	Environmental	Open in IMG/M
3300002908	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_40cm	Environmental	Open in IMG/M
3300002909	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_2_20cm	Environmental	Open in IMG/M
3300005166	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_123	Environmental	Open in IMG/M
3300005171	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_126	Environmental	Open in IMG/M
3300005178	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137	Environmental	Open in IMG/M
3300005180	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134	Environmental	Open in IMG/M
3300005181	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_127	Environmental	Open in IMG/M
3300005187	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124	Environmental	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005447	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_138	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005518	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG	Environmental	Open in IMG/M
3300005558	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_147	Environmental	Open in IMG/M
3300005576	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_157	Environmental	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006791	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_102	Environmental	Open in IMG/M
3300006796	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114	Environmental	Open in IMG/M
3300006804	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200	Environmental	Open in IMG/M
3300006806	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100	Environmental	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300007258	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300010078	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_40_2_0_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010089	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Wat_40_5_8_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010106	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_20_5_0_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010111	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_40_2_24_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010113	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Wat_20_5_24_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010124	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_40_5_4_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010126	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_40_2_0_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010132	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Wat_40_5_16_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010140	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Wat_40_5_24_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010141	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_40_5_8_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010142	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_40_2_4_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010301	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_09082015	Environmental	Open in IMG/M
3300010303	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09182015	Environmental	Open in IMG/M
3300010323	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_40cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010335	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09082015	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300012204	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_100_16 metaG	Environmental	Open in IMG/M
3300012206	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaG	Environmental	Open in IMG/M
3300012207	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012349	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Sage2_R_115_16 metaG	Environmental	Open in IMG/M
3300012351	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_100_16 metaG	Environmental	Open in IMG/M
3300012364	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_20cm_2_0_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012371	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_20cm_2_0_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012373	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_2_0_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012383	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_20cm_5_4_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012386	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_2_24_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012389	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_20cm_5_16_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012391	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_20cm_5_16_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012392	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_2_4_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012398	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_2_24_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012400	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_2_4_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012409	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_2_16_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012410	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_40cm_5_16_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012917	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaG	Environmental	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012975	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_11112015	Environmental	Open in IMG/M
3300012976	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_5_0_1 metaG	Environmental	Open in IMG/M
3300015054	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300015358	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_40cm_5_24_1 metaG	Environmental	Open in IMG/M
3300017654	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_2_24_1 metaG	Environmental	Open in IMG/M
3300017656	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_11112015	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300019789	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300024187	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK13	Environmental	Open in IMG/M
3300024219	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK06	Environmental	Open in IMG/M
3300026306	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_102 (SPAdes)	Environmental	Open in IMG/M
3300026307	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_123 (SPAdes)	Environmental	Open in IMG/M
3300026310	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_2_20cm (SPAdes)	Environmental	Open in IMG/M
3300026316	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_122 (SPAdes)	Environmental	Open in IMG/M
3300026326	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_127 (SPAdes)	Environmental	Open in IMG/M
3300026329	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_131 (SPAdes)	Environmental	Open in IMG/M
3300026331	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137 (SPAdes)	Environmental	Open in IMG/M
3300026335	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_139 (SPAdes)	Environmental	Open in IMG/M
3300026342	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_146 (SPAdes)	Environmental	Open in IMG/M
3300026523	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_157 (SPAdes)	Environmental	Open in IMG/M
3300026530	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_154 (SPAdes)	Environmental	Open in IMG/M
3300026538	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114 (SPAdes)	Environmental	Open in IMG/M
3300026540	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134 (SPAdes)	Environmental	Open in IMG/M
3300026542	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_148 (SPAdes)	Environmental	Open in IMG/M
3300027725	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200 (SPAdes)	Environmental	Open in IMG/M
3300027765	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100 (SPAdes)	Environmental	Open in IMG/M
3300027775	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control (SPAdes)	Environmental	Open in IMG/M
3300027882	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI25385J37094_100962341	3300002558	Grasslands Soil	MTSKLLGLAVTLALPTMLAAQTPQIPNEHAALHSQGAAHRATHRRGDVVAVPHTRNPNAATPAIRA
JGI25382J43887_102094171	3300002908	Grasslands Soil	MINKLLGLAVTLALPTLMAAQTPQIPNEHSQGAAHRATKRRGEVVAVPHTPNPNAATRAVRAMPATPGDG
JGI25388J43891_10065725	3300002909	Grasslands Soil	MIRKLFGLAAVCAVPTLLAAQTPQIPNEHASDQGKAMVALHSQGAVHRAKHRRGAVLQPPVDVTRNPNAATPATRATPAIPGHGDVP
JGI25388J43891_10269783	3300002909	Grasslands Soil	MTSKLLGLAVTLGLPTMLAAQTPQIPNEHASDRGKAMVALHSQGAAHRATHRRGDVVAVPHTRNPNAATPAV
Ga0066674_101298883	3300005166	Soil	MTSKLLGLAVTLGLPTMLAAQTPQIPNEHASDRGKAMVALHSQGAAHRATHRRGDVVAVPHTRNPNAA
Ga0066674_102844383	3300005166	Soil	MTSKLLGLAVTLGLPTMLAAQTPQIPNKNASDRGKAMVALHSQGAAHRATHRRGDVVAVPHTRNPNAA
Ga0066677_108454072	3300005171	Soil	MIRKLFGLAAVGALPTLLAAQTSQIPNEHASDQGKAMVALHSQGAAHRATHRRGDVVDVPRNPNAATPATRATPAV
Ga0066688_105299081	3300005178	Soil	MTSKLLGLAVTLGLPTMLAAQTPQIPNEHASDRGKAMVALHSQGAAHRATHRRGDVV
Ga0066685_104358121	3300005180	Soil	MIGKLFGLAAVCAVPTLLAAQTPQIPNEHASDQGKAMVALHSQGAVHRAKHRRGVVLQ
Ga0066685_109493632	3300005180	Soil	MTSKLLGLAVTLGLPTMLAAQTPQIPNEHASDRGKAMVALHSQGAAHRATHRRGDVVAVPHTRNPNA
Ga0066678_110420561	3300005181	Soil	MTSKLLGLAVTLGLPTMLAAQTPQIPNEHASDRGKAMVALHSQGAAHRATHRRGDVVAVPHT
Ga0066675_106847091	3300005187	Soil	MIRKLFGLAAVCAVPTLLAAQTPQIPTVHASDRGKAMVALHSQGAAHRATHRRGDVVDVPRNPNAA
Ga0070709_113607752	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	MIDKLFGLVVTLALPTMVAAQTPQIPNEHASDQGKAMVALHSQGAAHRATHRRGEVV
Ga0066689_109462701	3300005447	Soil	MTSKLLGLAVTLGLPTMLAAQTPQIPNEHASDRGKAMVALHSQGAAHRATHRRGDVVAVPHTR
Ga0070707_1000970626	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	MIRKLLGFAAACAVPTLLAAQTPQIPNAHASDQGKAMVALHSQGAAHRAKHHRGDVVAVDVPRNPNAATPAT
Ga0070699_1009460942	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	MINKLLGLAVTLGLPTMLAAQTPQIPNEHASDQGKAMVALHSQGAAHRATHRRGEVVTVPQTRNPN
Ga0066698_104164793	3300005558	Soil	MINKLLGLAVTLALPTLMAAQTPQIPNEHSQGPAHRATKRRGEVVAVPHTPNPNAATRAVRAMPATPGHGV
Ga0066708_100838934	3300005576	Soil	MTSKLLGLAVTLGLPTMLAAQTPQIPNEHASDRGKAMVALHSQGAAHRATHRRGDVVAVPHTRNPNAATPAVRATPAVPGHG
Ga0070716_1002073843	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	MIRTVLGLMAVLALPSILAAQTPQIPNEHASDQGKAMVALHSQGAAHRATHRRGDVVTPPTPGVRNPNAATPAVPAT
Ga0079222_101008361	3300006755	Agricultural Soil	MIRKLFGLAAVAALPTLLAAQTPQIPNEHASDRGKAMVALHSQGAVHRAKHRRGAVVLPQPADVTRNPNAATP
Ga0079222_119106161	3300006755	Agricultural Soil	MIRTVLAIVATLALPAALAAQTPQIPNDHASDQGKAMVALHSQGAVHRATHRRGDVVTPPAAPGTRNPNAATPAVPATPAVPGH
Ga0066653_102122853	3300006791	Soil	MTSKLLGLAVTLGLPTMLAAQTPQIPNEHASDRGKAMVALHSQGAAHRATHRRGDVVAVPHTRNPNAAT
Ga0066653_103568743	3300006791	Soil	MTSKLLGLAVTLGLPTMLAAQTPQIPNKNASDRGKAMVALHSQGAAHRATHRRGDVVAVPHTRNPNAAT
Ga0066665_1000215712	3300006796	Soil	MIRTVFGLMAALALPSWLAAQTPQIPNEHASDQGKAMVALHSQGVKHRATHRRGEVVPPMPGMTRNPN
Ga0079221_103799073	3300006804	Agricultural Soil	MIRTVLGLMAVLALPSILAAQTPQIPNEHASDQGKAMVALHSQGAAHRATHRRGDVVTPPTPGVRNPKAAT
Ga0079220_100225735	3300006806	Agricultural Soil	MIRKLFGLAAVAALPTLLAAQTPQIPNEHASDRGKAMVALHSQGAVHRAKHRRGAVVLPQPADVTRNPNAATPATP
Ga0079219_117746871	3300006954	Agricultural Soil	MINKLLGLAATLALPTMVAAQTPQIPNEHASDQGKAMVALHSQGAAHRATHRRGEVVTVPHTRNPNA
Ga0099793_102536043	3300007258	Vadose Zone Soil	MTSKLLGLAVTLALPTMLAAQTPQIPNEHASDQGKAMVALHSQGAAHRATHRRGDVVAVPHTRNPNAATPAIRATPAVPG
Ga0066710_1019726461	3300009012	Grasslands Soil	VALALPTIAAAQTPLIPDGRASDQANATVTLHSQGAAHRATHRRGDVVRIAPTRSPNAATRAIRGT
Ga0066710_1026310642	3300009012	Grasslands Soil	MINKLLGLAVTLALPTLMAAQTPQIPNEHSQGAAHRATKRRGEVVAVPHTP
Ga0127487_1346772	3300010078	Grasslands Soil	MTSKLLGLAVTLGLPTMLAAQTPQIPNKNASDRGKAMVALHSQGAAHRATHRRGDVV
Ga0127454_10399261	3300010089	Grasslands Soil	MTSKLLGLAVTLGLPTMLAAQTPQIPNEHASDRGKAMVALHSQGAAHRATHRRGEVVTVPHTRNPN
Ga0127472_11309021	3300010106	Grasslands Soil	MTSKLLGLAVTLGLPTMLAAQTPQIPNEHASDRGKAMVALHSQGAAHRATHRRGDVVAVPHTRNPNAATPAVRATPAVPGH
Ga0127491_10699711	3300010111	Grasslands Soil	MTSKLLGLAVTLGLPTMLAAQTPQIPNEHASDQGKAMVALHPQGAPHRATHRRGDV
Ga0127444_10777312	3300010113	Grasslands Soil	MTSKLLGLAVTLGLPTMLAAQTPQIPNEHASDRGKAMVALHSQGAAHRATHRRGDVVAVP
Ga0127498_10351172	3300010124	Grasslands Soil	MTSKLLGLAVTLGLPTMLAAQTPQIPNEHASDRGKAMVALHSQGAAHRATHRRGEVVTVPHTRNPNAATPAVR
Ga0127482_10943902	3300010126	Grasslands Soil	MTSKLLGLAVTLGLPTMLAAQTPQIPNEHASDRGKAMVALHSQGAAHRATHRRGDVVAVPHTRNPNAATPAVRAT
Ga0127455_10051772	3300010132	Grasslands Soil	MTSKLLGLAVTLGLPTMLAAQTPQIPNEHASDRGKAMVALHSQGAAHRATHRRGEVVTV
Ga0127456_10290532	3300010140	Grasslands Soil	MTSKLLGLAVTLGLPTMLAAQTPQIPNEHASDRGKAMVALHSQGAAHRATHRRGEVVTVPHTRN
Ga0127499_10941251	3300010141	Grasslands Soil	MTSKLLGLAVTLGLPTMLAAQTPQIPNEHASDRGKAMVALHSQGAAHRATHRRGEVV
Ga0127483_12035302	3300010142	Grasslands Soil	MTSKLLGLAVTLGLPTMLAAQTPQIPNEHASDQGKAMVALHPQGAPHRATHRRGDVVAVPHTRN
Ga0134070_104725601	3300010301	Grasslands Soil	VVAETFSHASQARRAHHDSRGGCIISKLLGLAVTLALPTLMAAQTPQIPNENSQGPAHRATKRRGEVVAVPHTPNPNAA
Ga0134082_104616312	3300010303	Grasslands Soil	MLRKLFGLAAVCAVPTLLAAQTPQIPNEHASDQGKAMVALHSQGAVHRATHRRGVVLQPPVDVTRNPNAAT
Ga0134086_101131983	3300010323	Grasslands Soil	MTSKLLGLAVTLGLPTMLAAQTPQIPNEHASDQGKAMVALHPQGAPHRATHRRGDVVAVPHTRNPNAATPAIRATPAVPGHGVV
Ga0134063_100145541	3300010335	Grasslands Soil	MIRKLFGLAAVCAVPTLLAAQTPQIPNEHASDRGKAMAALHSQGAAHRATHRRGDVVEVPRNPNAATAAIRAKPA
Ga0134063_107227651	3300010335	Grasslands Soil	MINKLLGLAVTLALPTVLAAQTPQIPNDNASDQGKAMVALHSQGAAHRATHRRGDVVAVPHTRNPNAATPA
Ga0134128_104843933	3300010373	Terrestrial Soil	MIDKLFGLVVTLALPTMVAAQTPQIPNEHASDQGKAMVALHSQGAAHRATHRRGEVVVAAPQARN
Ga0137374_110321682	3300012204	Vadose Zone Soil	MINKLLVLAVTLALPTMLAGQTPQIPNEHASDKGKAMVALHSQGAAHRATHRRGEV
Ga0137380_113295522	3300012206	Vadose Zone Soil	MTSKLLGLAVTLALPTMLAAQTPQIPNEHPSDQGKAMVALHSQGAAHRATHRRGDVVAVPHTRNPNAATPAIRA
Ga0137380_114968691	3300012206	Vadose Zone Soil	MINKLLGVAVTLALPTVLAAQTPQIPNDNASDQGKAMVALHSQGAAHRATHRRGDVVAVPHTRNPNAATPAVRA
Ga0137381_117871281	3300012207	Vadose Zone Soil	MNKLLALVATLALPAMLAAQEPQIPNAHASDQGKAMVALHSQGAAHRATHRRGDVVPLVAPTTRNPNAATPAVRATPAVPGHGV
Ga0137381_117984771	3300012207	Vadose Zone Soil	MINKLLGVAVTLALPTVLAAQTPQIPNDNASDQGKAMVALHSQGAAHRATHRRGDVVAVPHTRNPNAATP
Ga0137377_106157613	3300012211	Vadose Zone Soil	MTSKLLGLAVTLALPTMLAAQTPQIPNDHASDQGKAMVALHSQGAAHRATHRRGDVVAVPHTRNPNAATPAIRA
Ga0137387_105492311	3300012349	Vadose Zone Soil	MTSKLLGLAVTLALPTMLAAQTPQIPNEHPSDQGKAMVALHSQGAAHRATHRRGDVVAVPHTRNPNAATPAIR
Ga0137387_108460102	3300012349	Vadose Zone Soil	MTSKLLGLAVTLGLPTMLAAQTPQIPNEHASDRGKAMVALHSQGAAHRATHRRGDVVAVPHTRNPNAATPAIR
Ga0137387_109229992	3300012349	Vadose Zone Soil	MINKLLGLAVTLALPTMLAAQTPQIPNDHASDQGKAMVALHSQGAAHRATHRRGDVV
Ga0137386_103947851	3300012351	Vadose Zone Soil	MTSKLLGLAVTLGLPTMLAAQTPQIPNEHASDRGKAMVALHSQGAAHRATHRRGDVVAVPHTRNPN
Ga0134027_10177642	3300012364	Grasslands Soil	MTSKLLGLAVTLGLPTMLAAQTPQIPNKNASDRGKAMVALHSQGAAHRATHRRGDVVAVP
Ga0134022_12006952	3300012371	Grasslands Soil	MLRKLFGLAAVCAVPTLLAAQTPQIPNEHASDRGKAMVASHSQGAVHRAKHRRGVVLQPLVDATRNPN
Ga0134042_11351052	3300012373	Grasslands Soil	MTSKLLGLAVTLGLPTMLAAQTPQIPNEHASDQGKAMVALHPQGAPHRATHRRGDVVAVPHTRNPNAATP
Ga0134033_11463672	3300012383	Grasslands Soil	MIRKLFGLAAVCAVPTLLAAQTPQIPNEHASDQGKAMVALHSQGAVHRAKHRRGAVLQPLVDATRN
Ga0134046_12272692	3300012386	Grasslands Soil	MTSKLLGLAVTLGLPTMLAAQTPQIPNEHASDQGKAMVALHPQGAPHRATHRRGDVVAVPHTRNP
Ga0134040_12696981	3300012389	Grasslands Soil	VKENSMIRKLFGLAAVGALPTLLAAQTSQIPNEHASDRGKAMVALHSQGAAHRATHRRGDVVDVPRNPNAATP
Ga0134035_11815572	3300012391	Grasslands Soil	MTSKLLGLAVTLGLPTMLAAQTPQIPNEHASDRGKAMVALHSQGAAHRATHRRGDVVAVPHTRNPNAATPAVRATPAVP
Ga0134043_11852862	3300012392	Grasslands Soil	MTSKLLGLAVTLGLPTMLAAQTPQIPNKNASDRGKAMVALHSQGAAHRATHRRGDVVAVPHTRNP
Ga0134051_11798002	3300012398	Grasslands Soil	MTSKLLGLAVTLGLPTMLAAQTPQIPNEHASDRGKAMVALHSQGAAHRATHRRGDVVAVPHTRNPNAATPAIRATPAVPGHGV
Ga0134048_12007932	3300012400	Grasslands Soil	MTSKLLGLAVTLGLPTMLAAQTPQIPNKNASDRGKAMVALHSQGAAHRATHRRGDVVAVPHTRNPN
Ga0134045_13997592	3300012409	Grasslands Soil	MINKLLGLAVSLALPTLMAAQTPQIPNEHSQGAAHRATKRRGEVVAVPHTPNPNAATRAVRAMPATPGHGVVPTIRA
Ga0134060_14853232	3300012410	Grasslands Soil	MTSKLLGLAVTLGLPTMLAAQTPQIPNEHASDQGKAMVALHPQGAPHRATHRRGDVVAVPHTRNPN
Ga0137395_110502702	3300012917	Vadose Zone Soil	MNKLLALVATLALPAMLAAQEPQIPNAHASDQGKAMVALHSQGAAHRATHRRGDVVPLVAPTTRNPN
Ga0137416_102579751	3300012927	Vadose Zone Soil	MINKLLGLAVALALPTMVAAQTPEIPDEHASERGQAMVALQSQSAGYRARHRRGE
Ga0134110_102587921	3300012975	Grasslands Soil	MINKLLGLAVTLALPTVLAAQTPQIPNDNASDQGKTMVALHSQGAAHRATHRRGDVVAVPHTRNPNA
Ga0134076_104845312	3300012976	Grasslands Soil	MINKLLGLAVTLALPTVLAAQTPQIPNDNASDQGKAMVALHSQGAAHRATHRRGDVVAVPHTRNPNA
Ga0137420_14158002	3300015054	Vadose Zone Soil	MINKLLGLAVALALPTMVAAQTPQIPDEHASERGQAMVALHSQGAAHRTRHRRGEVVTVPQTGAIRVTPAAPGHGD
Ga0134089_102094191	3300015358	Grasslands Soil	MTSKLLGLAVTLGLPTMLAAQTPQIPNEHASDRGKAMVALHSQGAAHRATHRRGEVVTVPHTRNPNAATPA
Ga0134089_102774321	3300015358	Grasslands Soil	MSSRLLGLAVALALPTMAAAQTPQIPDGRASDQANAMVTLHSQGAAHRATHRRGDVVRIAPTRSPNAATRAIRATPGT
Ga0134069_13927132	3300017654	Grasslands Soil	MTNKLLGLAVALALPTMVAAQTPQIPNEHASALHSQGAAHRAKHRRGDVVTVAHTRNPNAATPA
Ga0134112_102626212	3300017656	Grasslands Soil	MTSKLLGLAVTLGLPTMLAAQTPQIPNEHASDRGKAMVALHSQGAAHRATHRRGEVVTVPHTRNPNAATP
Ga0066667_103643661	3300018433	Grasslands Soil	MTSKLLGLAVTLGLPTMLAAQTPQIPNEHASDRGKAMVALHSQGAAHRATHRRGDVVA
Ga0137408_13846064	3300019789	Vadose Zone Soil	VTLALPAMLAAQTPQIPNEHASDRGTAMVALHSQGAAHRATHRRGEVVVVAHARNANAATPAVRPT
Ga0247672_10761832	3300024187	Soil	MIRTVLAIAATLALPAALAAQTPQIPNDHASDQGKAMVALHSQGAAHRATHRRGDVVTPPAAPGT
Ga0247665_10052514	3300024219	Soil	MIRTVLAIAATLALPAALAAQTPQIPNDHASDQGKAMVALHSQGAAHRATHRRGDVVTPPAAPGTRNPNAATPAV
Ga0209468_10384024	3300026306	Soil	MTSKLLGLAVTLGLPTMLAAQTPQIPNEHASDRGKAMVALHSQGAAHRATHRRGDVVAVPHTRNPNAATP
Ga0209469_10557451	3300026307	Soil	MTSKLLGLAVTLGLPTMLAAQTPQIPNKNASDRGKAMVALHSQGAAHRATHRRGDVVAVPHTRNPNAATP
Ga0209239_11242061	3300026310	Grasslands Soil	MLRKLFGLAAVCAVPTLLAAQTPQIPNEHASDQGKAMVALHSQGAVHRATHRRGVVLQPPVDVTRNPNAATPATRATP
Ga0209155_10409744	3300026316	Soil	MIGKLFGLAAVCAVPTLLAAQTPQIPNEHASDQGKAMVALHSQGAIHRAKHRRGAVLQPLVDVS
Ga0209801_10181071	3300026326	Soil	MTSKLLGLAVTLGLPTMLAAQTPQIPNEHASDQGKAMVALHPQGAPHRATHRRGDVVAVPHTRNPNAATPAIRATPA
Ga0209375_10069211	3300026329	Soil	MTNKLLGLAVALALPTMVAAQTPQIPNEHVHSQGAAHRAKHRRGDVVTVAHTRNPNAATPAVRATPAVPGHGIVP
Ga0209267_11882151	3300026331	Soil	MTSKLLGLAVTLGLPTMLAAQTPQIPNEHASDRGKAMVALHSQGAAHRATHRRGDVVAVPHTRNP
Ga0209804_12079121	3300026335	Soil	MTSKLLGLAVTLGLPTMLAAQTPQIPNEHASDRGKAMVALHSQGAAHRATHRRGDVVAVPHTRN
Ga0209804_12341221	3300026335	Soil	MIRTLLGFAAVCAVPTLLAAQTPQIPNEHASDQGKAMVALHSQGAAHRAKHRRGDVIAVDATRNPNAA
Ga0209057_11398411	3300026342	Soil	MIRKLFGLAALCAVPTLLAAQTPQIPNEHASDQGKAMVALHSQGAVHRAKHRRGVVLQPLVDATRNPNAATP
Ga0209808_11617593	3300026523	Soil	MIRKLFGLAAVYAVPTLLAAQTPQIPNERPSDRGTAMVALHSQGAAHRATHRRGDVVDVPRNPNAATPATRATPAV
Ga0209807_12196872	3300026530	Soil	MIRKLFGLAAVGALPTLLAAQTSQIPNEHASDQGKAMVALHSQGAAHRATHRRGDVVDVP
Ga0209056_100516181	3300026538	Soil	MTSKLLGLAVTLGLPTMLAAQTPQIPNEHASDRGKAMVALHSQGAAHRATHRRGDVVAV
Ga0209376_13383571	3300026540	Soil	MTSKLLGLAVTLGLPTMLAAQTPQIPNKHASDRGKAMVALHSQGAAHRATHRRGDVVAVPHTRNPNAAT
Ga0209805_10787394	3300026542	Soil	MIRKLFGLAAVGALPTLLAAQTPQIPNEHASDQGKAMVALHSQGAAHRATHRRGDVVDVPRNPNAATPATRATPAVPGHGDVP
Ga0209178_11530701	3300027725	Agricultural Soil	MIGKLFSVVAVFVVPAVVAAQTPQIPNEHASDRGKAMVALHSQGAQHRATHRRGEVVAPTPDARNPNAATPATRATPAIPGHGDV
Ga0209073_103613012	3300027765	Agricultural Soil	MIRTVLAIAATLALPAALAAQTPQIPNDHASDQGKAMVALHSQGAVHRATHRRGDVVTPPAAPGTRNPNAATPAVPAT
Ga0209177_100927951	3300027775	Agricultural Soil	MIGKLFSVVAVFVVPAVVAAQTPQIPNEHASDRGKAMVALHSQGAQHRATHRRGEVVAPTPDARNPNAATP
Ga0209590_105070801	3300027882	Vadose Zone Soil	MTSKLLGLAVTLGLPTMLAAQTPQIPNEHASDQGKAMVALHSQGAAHRATHRRGDVVTVP
Ga0307471_1003283174	3300032180	Hardwood Forest Soil	MIRTVLSLVAAVALPSILAAQTPQIPNEHASDQGKAMVALHSQGAKHRATHRRGEVVPPVPATATRNPNAATPAVPATPAVPG

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F101764

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences