Metagenome / Metatranscriptome Family F101757

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F101757
Family Type	Metagenome / Metatranscriptome
Number of Sequences	102
Average Sequence Length	45 residues
Representative Sequence	GLPSVDCYRAGVEAWRRTHPDQSAEYAAKQAVAVILAAKVSLRVEE
Number of Associated Samples	82
Number of Associated Scaffolds	102

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	3.41 %
% of genes near scaffold ends (potentially truncated)	79.41 %
% of genes from short scaffolds (< 2000 bps)	82.35 %
Associated GOLD sequencing projects	81
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.51

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (60.784 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (27.451 % of family members)
Environment Ontology (ENVO)	Unclassified (34.314 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (49.020 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 48.65% β-sheet: 0.00% Coil/Unstructured: 51.35%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.51
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.51
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 102 Family Scaffolds
PF00275	EPSP_synthase	40.20
PF08281	Sigma70_r4_2	1.96
PF02397	Bac_transf	0.98
PF13340	DUF4096	0.98
PF00004	AAA	0.98
PF00815	Histidinol_dh	0.98
PF00180	Iso_dh	0.98
PF13506	Glyco_transf_21	0.98
PF02518	HATPase_c	0.98

COG ID	Name	Functional Category	% Frequency in 102 Family Scaffolds
COG0141	Histidinol dehydrogenase	Amino acid transport and metabolism [E]	0.98
COG2148	Sugar transferase involved in LPS biosynthesis (colanic, teichoic acid)	Cell wall/membrane/envelope biogenesis [M]	0.98

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	60.78 %
Unclassified	root	N/A	39.22 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	60.78 %
Unclassified	root	N/A	39.22 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	60.78 %
Unclassified	root	N/A	39.22 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	40.20 %
Unclassified	root	N/A	39.22 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.98 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	40.20 %
Unclassified	root	N/A	39.22 %
Cyanobacteria/Melainabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	39.22 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	18.63 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	11.76 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2.94 %
Cyanobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	39.22 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	18.63 %
Rhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	1.96 %
Acetobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	1.96 %
Nostocales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales	0.98 %
unclassified Rhodospirillales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	39.22 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	18.63 %
Roseicella	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Roseicella	0.98 %
Rhodospirillales bacterium URHD0088	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0088	0.98 %
Rhizobium/Agrobacterium group	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group	0.98 %
Tolypothrichaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Tolypothrichaceae	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	39.22 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	18.63 %
unclassified Roseicella	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Roseicella → unclassified Roseicella	0.98 %
Rhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium	0.98 %
Tolypothrix	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Tolypothrichaceae → Tolypothrix	0.98 %
Rhodospirillales bacterium URHD0088	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0088	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	39.22 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	18.63 %
Roseicella sp. DB1501	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Roseicella → unclassified Roseicella → Roseicella sp. DB1501	0.98 %
unclassified Rhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium → unclassified Rhizobium	0.98 %
Tolypothrix campylonemoides	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Tolypothrichaceae → Tolypothrix → Tolypothrix campylonemoides	0.98 %
Rhodospirillales bacterium URHD0088	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0088	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	39.22 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	18.63 %
Rhizobium sp. NFR17	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium → unclassified Rhizobium → Rhizobium sp. NFR17	0.98 %
Tolypothrix campylonemoides VB511288	strain	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Tolypothrichaceae → Tolypothrix → Tolypothrix campylonemoides → Tolypothrix campylonemoides VB511288	0.98 %
Roseicella sp. DB1501	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Roseicella → unclassified Roseicella → Roseicella sp. DB1501	0.98 %
Rhodospirillales bacterium URHD0088	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0088	0.98 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300002568\|C688J35102_119830455	Not Available	787	Open in IMG/M
3300002568\|C688J35102_120771200	Not Available	1534	Open in IMG/M
3300005353\|Ga0070669_101165222	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	665	Open in IMG/M
3300005454\|Ga0066687_10060835	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	1796	Open in IMG/M
3300005468\|Ga0070707_100003062	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	15843	Open in IMG/M
3300005545\|Ga0070695_101313192	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	598	Open in IMG/M
3300005548\|Ga0070665_101348887	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	723	Open in IMG/M
3300005563\|Ga0068855_102183996	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	556	Open in IMG/M
3300005569\|Ga0066705_10761935	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	579	Open in IMG/M
3300005618\|Ga0068864_101740961	All Organisms → cellular organisms → Bacteria	628	Open in IMG/M
3300005891\|Ga0075283_1085127	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	579	Open in IMG/M
3300006028\|Ga0070717_11006168	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	759	Open in IMG/M
3300006173\|Ga0070716_100380214	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1009	Open in IMG/M
3300006237\|Ga0097621_101953046	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	560	Open in IMG/M
3300006854\|Ga0075425_101252072	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	842	Open in IMG/M
3300009088\|Ga0099830_10517345	Not Available	974	Open in IMG/M
3300009088\|Ga0099830_11554717	Not Available	551	Open in IMG/M
3300009089\|Ga0099828_10563160	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1027	Open in IMG/M
3300009090\|Ga0099827_10879725	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	776	Open in IMG/M
3300009137\|Ga0066709_104119509	All Organisms → cellular organisms → Bacteria	529	Open in IMG/M
3300010038\|Ga0126315_11269298	Not Available	501	Open in IMG/M
3300010040\|Ga0126308_11182671	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	541	Open in IMG/M
3300010045\|Ga0126311_11937067	Not Available	501	Open in IMG/M
3300010166\|Ga0126306_10555911	Not Available	911	Open in IMG/M
3300010366\|Ga0126379_11809605	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	715	Open in IMG/M
3300010375\|Ga0105239_13072608	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	544	Open in IMG/M
3300010376\|Ga0126381_100252772	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	2389	Open in IMG/M
3300011271\|Ga0137393_10303938	All Organisms → cellular organisms → Bacteria	1359	Open in IMG/M
3300011271\|Ga0137393_10501278	Not Available	1042	Open in IMG/M
3300011271\|Ga0137393_10642998	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	909	Open in IMG/M
3300011271\|Ga0137393_10891100	All Organisms → cellular organisms → Bacteria	759	Open in IMG/M
3300012198\|Ga0137364_10707899	All Organisms → cellular organisms → Bacteria	760	Open in IMG/M
3300012199\|Ga0137383_10353763	All Organisms → cellular organisms → Bacteria	1076	Open in IMG/M
3300012200\|Ga0137382_10602646	Not Available	784	Open in IMG/M
3300012202\|Ga0137363_10964756	All Organisms → cellular organisms → Bacteria	724	Open in IMG/M
3300012203\|Ga0137399_11653339	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	529	Open in IMG/M
3300012205\|Ga0137362_10641793	All Organisms → cellular organisms → Bacteria	914	Open in IMG/M
3300012206\|Ga0137380_10563297	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	999	Open in IMG/M
3300012206\|Ga0137380_10753645	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	843	Open in IMG/M
3300012207\|Ga0137381_10288379	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1429	Open in IMG/M
3300012207\|Ga0137381_10823907	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	804	Open in IMG/M
3300012208\|Ga0137376_10604619	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	949	Open in IMG/M
3300012212\|Ga0150985_107746753	Not Available	693	Open in IMG/M
3300012212\|Ga0150985_108238556	Not Available	639	Open in IMG/M
3300012212\|Ga0150985_110657185	All Organisms → cellular organisms → Bacteria	653	Open in IMG/M
3300012212\|Ga0150985_116202673	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	710	Open in IMG/M
3300012351\|Ga0137386_10257406	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1255	Open in IMG/M
3300012360\|Ga0137375_11041183	Not Available	640	Open in IMG/M
3300012925\|Ga0137419_11115483	Not Available	657	Open in IMG/M
3300012955\|Ga0164298_10934259	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	634	Open in IMG/M
3300012975\|Ga0134110_10141880	All Organisms → cellular organisms → Bacteria	989	Open in IMG/M
3300015356\|Ga0134073_10225547	Not Available	635	Open in IMG/M
3300015371\|Ga0132258_12416085	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Tolypothrichaceae → Tolypothrix → Tolypothrix campylonemoides → Tolypothrix campylonemoides VB511288	1316	Open in IMG/M
3300015374\|Ga0132255_103622293	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	657	Open in IMG/M
3300018433\|Ga0066667_10732864	All Organisms → cellular organisms → Bacteria	832	Open in IMG/M
3300021170\|Ga0210400_10480998	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1025	Open in IMG/M
3300021362\|Ga0213882_10138387	Not Available	995	Open in IMG/M
3300021384\|Ga0213876_10646764	All Organisms → cellular organisms → Bacteria	563	Open in IMG/M
3300021432\|Ga0210384_10304119	Not Available	1436	Open in IMG/M
3300021439\|Ga0213879_10149411	All Organisms → cellular organisms → Bacteria	677	Open in IMG/M
3300021560\|Ga0126371_10820193	Not Available	1076	Open in IMG/M
3300021560\|Ga0126371_12317858	Not Available	649	Open in IMG/M
3300021560\|Ga0126371_13903628	Not Available	502	Open in IMG/M
3300025915\|Ga0207693_10646184	All Organisms → cellular organisms → Bacteria	822	Open in IMG/M
3300026078\|Ga0207702_10008351	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium → unclassified Rhizobium → Rhizobium sp. NFR17	8740	Open in IMG/M
3300026508\|Ga0257161_1078335	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	681	Open in IMG/M
3300026542\|Ga0209805_1108968	Not Available	1316	Open in IMG/M
3300026551\|Ga0209648_10639883	Not Available	582	Open in IMG/M
3300026551\|Ga0209648_10830547	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	505	Open in IMG/M
3300027884\|Ga0209275_10008747	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0088	4284	Open in IMG/M
3300028047\|Ga0209526_10164640	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1549	Open in IMG/M
3300028047\|Ga0209526_10272967	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Roseicella → unclassified Roseicella → Roseicella sp. DB1501	1151	Open in IMG/M
3300028536\|Ga0137415_11067455	All Organisms → cellular organisms → Bacteria	620	Open in IMG/M
3300029636\|Ga0222749_10750558	Not Available	534	Open in IMG/M
3300031057\|Ga0170834_107071398	Not Available	1016	Open in IMG/M
3300031546\|Ga0318538_10353189	All Organisms → cellular organisms → Bacteria	794	Open in IMG/M
3300031708\|Ga0310686_107340795	All Organisms → cellular organisms → Bacteria	610	Open in IMG/M
3300031770\|Ga0318521_10280177	Not Available	978	Open in IMG/M
3300031823\|Ga0307478_10165178	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1764	Open in IMG/M
3300031823\|Ga0307478_10889651	All Organisms → cellular organisms → Bacteria	745	Open in IMG/M
3300031893\|Ga0318536_10198834	Not Available	1020	Open in IMG/M
3300031938\|Ga0308175_101051433	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	901	Open in IMG/M
3300031938\|Ga0308175_101396512	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	781	Open in IMG/M
3300031939\|Ga0308174_11880217	Not Available	515	Open in IMG/M
3300032076\|Ga0306924_12045158	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	589	Open in IMG/M
3300032090\|Ga0318518_10316696	All Organisms → cellular organisms → Bacteria	801	Open in IMG/M
3300032174\|Ga0307470_10368240	All Organisms → cellular organisms → Bacteria	1004	Open in IMG/M
3300032174\|Ga0307470_11810907	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	517	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	84.31%
Host-Associated	Host-Associated	15.69%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	84.31%
Plants	Host-Associated → Plants	15.69%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	83.33%
Rhizoplane	Host-Associated → Plants → Rhizoplane	8.82%
Rhizosphere	Host-Associated → Plants → Rhizosphere	4.90%
Roots	Host-Associated → Plants → Roots	1.96%
Rock-Dwelling (Subaerial Biofilms)	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms)	0.98%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	67.65%
Loam	Environmental → Terrestrial → Soil → Loam	14.71%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	5.88%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	2.94%
Soil	Host-Associated → Plants → Rhizosphere → Soil	2.94%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	1.96%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.98%
Unclassified	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified	0.98%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.98%
Unclassified	Host-Associated → Plants → Roots → Unclassified	0.98%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	43.14%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	14.71%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	6.86%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	6.86%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	5.88%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	5.88%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	2.94%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	2.94%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	2.94%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	1.96%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	1.96%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.98%
Unclassified	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified → Unclassified	0.98%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.98%
Unclassified	Host-Associated → Plants → Roots → Unclassified → Unclassified	0.98%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	27.45%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	7.84%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	6.86%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	4.90%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	3.92%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	3.92%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	3.92%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	3.92%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	3.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.94%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	2.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	2.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	2.94%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	1.96%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	1.96%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	1.96%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.96%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	1.96%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	1.96%
Bulk Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Bulk Soil	0.98%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.98%
Rice Paddy Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Rice Paddy Soil	0.98%
Exposed Rock	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified → Unclassified → Exposed Rock	0.98%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.98%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.98%
Plant Roots	Host-Associated → Plants → Roots → Unclassified → Unclassified → Plant Roots	0.98%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.98%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.98%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	0.98%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300002568	Grasslands soil microbial communities from Hopland, California, USA - 2	Environmental	Open in IMG/M
3300005353	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG	Host-Associated	Open in IMG/M
3300005454	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_136	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005545	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG	Environmental	Open in IMG/M
3300005548	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG	Host-Associated	Open in IMG/M
3300005563	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2	Host-Associated	Open in IMG/M
3300005569	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_154	Environmental	Open in IMG/M
3300005618	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2	Host-Associated	Open in IMG/M
3300005891	Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_10C_80N_304	Environmental	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300006237	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2)	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300009088	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG	Environmental	Open in IMG/M
3300009089	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG	Environmental	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300010038	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot106	Environmental	Open in IMG/M
3300010040	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot55	Environmental	Open in IMG/M
3300010045	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot61	Environmental	Open in IMG/M
3300010166	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot27	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300011271	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaG	Environmental	Open in IMG/M
3300012198	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaG	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012200	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012206	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaG	Environmental	Open in IMG/M
3300012207	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaG	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012351	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_100_16 metaG	Environmental	Open in IMG/M
3300012360	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_113_16 metaG	Environmental	Open in IMG/M
3300012363	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG	Environmental	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012582	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaG	Environmental	Open in IMG/M
3300012918	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaG	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012955	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MG	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300012975	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_11112015	Environmental	Open in IMG/M
3300015356	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_5_24_1 metaG	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300021170	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M	Environmental	Open in IMG/M
3300021362	Barbacenia macrantha exposed rock microbial communities from rupestrian grasslands, the National Park of Serra do Cipo, Brazil - ER_R09	Environmental	Open in IMG/M
3300021384	Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9	Host-Associated	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021439	Vellozia epidendroides bulk soil microbial communities from rupestrian grasslands, the National Park of Serra do Cipo, Brazil - BS_R03	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026078	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026508	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NR-01-A	Environmental	Open in IMG/M
3300026542	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_148 (SPAdes)	Environmental	Open in IMG/M
3300026551	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)	Environmental	Open in IMG/M
3300027383	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM1_M2 (SPAdes)	Environmental	Open in IMG/M
3300027610	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M3 (SPAdes)	Environmental	Open in IMG/M
3300027884	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2 (SPAdes)	Environmental	Open in IMG/M
3300028047	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300028536	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300029636	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031057	Oak Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031474	Fir Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031546	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031770	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f17	Environmental	Open in IMG/M
3300031823	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05	Environmental	Open in IMG/M
3300031893	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f28	Environmental	Open in IMG/M
3300031938	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R1	Environmental	Open in IMG/M
3300031939	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.P.R2	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032090	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f22	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
C688J35102_1198304553	3300002568	Soil	GLPLVDCYRAGVDAWLGAHPDQRREHAAPKAVAVILAAKMSLRIDAA*
C688J35102_1207712004	3300002568	Soil	GLPLVDCYRAGVDAWLGAHPDQRREHAAPKAVAVILAAKVSLRIDGA*
Ga0070669_1011652223	3300005353	Switchgrass Rhizosphere	GQPSVDCYRAGVEAWRRTHPDQSAEYSAKQAVAVILAAKVTLRVEE*
Ga0066687_100608351	3300005454	Soil	GAGLPSVDCYRAGVEAWRRTHPDQSAEYAAKQAVAVILAAKVSLRVEE*
Ga0070707_10000306219	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	GMQSVDCYRAGVDAWRRAHPDQSAEYAAKQAVAVILAVKVSLRVEE*
Ga0070695_1013131923	3300005545	Corn, Switchgrass And Miscanthus Rhizosphere	VLQAFEEAREAGMQSVDCYRAGVDAWRRAHPDQSAEYAAKQAVAVILAVKVSLRVEE*
Ga0070665_1013488873	3300005548	Switchgrass Rhizosphere	GARRDGLASVDCYRAGVDAWRRTHPDQSAEYAAKQAVAVILAAKVSLRVEE*
Ga0068855_1021839962	3300005563	Corn Rhizosphere	LPSVDCYRAGVDAWRRTHPDQSAEYAAKQAVAVILAAKVSLRLEE*
Ga0066705_107619353	3300005569	Soil	ETARRSGRPSVECYQAGVAAWRREYPDQSAEYAAKQAVAVILATHAKIRIEE*
Ga0068864_1017409611	3300005618	Switchgrass Rhizosphere	EAWRRTHPDQSAEYAAKQAVAVILAAKVSLRVEE*
Ga0075283_10851273	3300005891	Rice Paddy Soil	AGVEAWRRTHPDQSSEYAAKQAVAVILAAKVSLRVEG*
Ga0070717_110061681	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	MRDDRSPVDCYRAGVEAWRRTHPDQSAEYAAKQAVAVILGAKVSLRVEE*
Ga0070716_1003802141	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	AGVAAWRREHPDQSAEYAAKQAVAVILATHAKIRIEE*
Ga0070765_1010629863	3300006176	Soil	ECYRAGVAAWRRVHPDQSPEYAAKRAVAVILERHVKLRVEE*
Ga0097621_1019530461	3300006237	Miscanthus Rhizosphere	QAGQPSVDCYRAGVEAWRRTHPDQSAEYSAKQAVAVILAAKVTLRVEE*
Ga0075425_1012520721	3300006854	Populus Rhizosphere	AVLDAFEAAREEGLPAVECYRAGVAAWRRIHRDQSAEYAARQAVAVILAAKVSLRVEE*
Ga0099830_105173451	3300009088	Vadose Zone Soil	GVEAWRRAHPNQTAAYAAKQAVAVILAAKVRLRFDDA*
Ga0099830_115547171	3300009088	Vadose Zone Soil	QDAGLLPVTCYRAGVEAWRHEHPDQRPEYAAKQAVAIILAAKVRLRVDDE*
Ga0099828_105631603	3300009089	Vadose Zone Soil	QDAGLPSVDCYRAGVEAWRRAHPNQTAAYAAKQAVAVILAAKVRLRFDDA*
Ga0099827_108797252	3300009090	Vadose Zone Soil	VDVIAAFEVAHEAGLPTVRCYLAGVEAWRRAHPDQRLEYAARQAVAVIHAAKIRLRVEDA
Ga0066709_1041195091	3300009137	Grasslands Soil	SVDCYRAGVDAWRRTHPDQSAEYAAKQAVAVILATKVSLRVEE*
Ga0126315_112692982	3300010038	Serpentine Soil	ALVECYRAGIDAWRRAHPDHAFQYAAQQAVAVILAAKISLHVDV*
Ga0126308_111826711	3300010040	Serpentine Soil	PSVDCYRAGVEAWRRRHPDQSSEYAAKQAVAVILAAKVSLRVEE*
Ga0126311_119370671	3300010045	Serpentine Soil	EAWRRVHPDQSSEYAAKQAVAVILAAKVSLRVEE*
Ga0126306_105559113	3300010166	Serpentine Soil	AGVDAWRRTHPDQSAEYAAKQAVAVILAAKVSLRVDE*
Ga0126379_118096052	3300010366	Tropical Forest Soil	SGRPSVECYRAGVEAWRRQHPDQSAEYAAKQAVAVILARHAKIRIEE*
Ga0105239_130726083	3300010375	Corn Rhizosphere	VDCYRAGVEAWRRTHPDQSAEYSAKQAVAVILAAKVTLRVEE*
Ga0126381_1002527725	3300010376	Tropical Forest Soil	SGRPSVECYRAGVAAWRREHPDQSPEYAAKQAVAVILATHAKIRIEE*
Ga0137393_103039381	3300011271	Vadose Zone Soil	VRCRPGGPLPPVICYRAGVEAWQHAHPDQRREYAAKQAVAVILAAKVRLRVDDA*
Ga0137393_105012782	3300011271	Vadose Zone Soil	MFWFAPLGVEAWRRAHPGQMPKYAAQKAVAVILAAKIGLRVDDA*
Ga0137393_106429983	3300011271	Vadose Zone Soil	AFEAAQEAGLSTVRCYLAGVEAWRRAHPDQRLEYAAHQAVAVIHAAKIRLRVEDA*
Ga0137393_108911002	3300011271	Vadose Zone Soil	DAWRRAHPDQSAEYAAKQAVAVILAVKVSLRVEE*
Ga0137364_107078993	3300012198	Vadose Zone Soil	YRAGVAAWRREHPDQSAEYAAKQAVAVIIARHVKIRIEE*
Ga0137364_113604111	3300012198	Vadose Zone Soil	GVEAWRRVHPDQTLEHAARRAVVVILAVKVSLRIPDD*
Ga0137383_103537633	3300012199	Vadose Zone Soil	RAGVEAWRRTHPDQSAEYAAKQAVAVILAAKVSLRVEE*
Ga0137382_106026461	3300012200	Vadose Zone Soil	EAWRSAHPDQRPEYAAKQAVAVILAAKVKLRVEDA*
Ga0137363_109647561	3300012202	Vadose Zone Soil	AGVAAWRRIHRDHAAEYAARQAVAVILAAKVSLRVDQ*
Ga0137399_116533391	3300012203	Vadose Zone Soil	SAREAGMSSVDCYRAGVDAWRRTHPDQSAEYAAKQAVAVILTAKVSLRVEE*
Ga0137362_106417933	3300012205	Vadose Zone Soil	CYRAGVEAWRRIHRDHAAEYAARQAVAVILAAKVSLRVDQ*
Ga0137380_105632971	3300012206	Vadose Zone Soil	TVRCYLAGVEAWRRAHPDQRPEYAARQAVAVIHAAKVRLRVEDA*
Ga0137380_107536452	3300012206	Vadose Zone Soil	GLPTVRCYLAGVEAWRRAHPDQRLEYAAGQAVAVIHAAKIKLRVEDA*
Ga0137381_102883791	3300012207	Vadose Zone Soil	VRCYLAGVEAWRRAHPDQRLEYAARQAVAVIHAAKIKLRVEDA*
Ga0137381_108239072	3300012207	Vadose Zone Soil	RCYLAGVEAWRRAHPDQRLEYAARQAVAVIHAAKIRLRVEDV*
Ga0137376_106046191	3300012208	Vadose Zone Soil	ADCYRAGVVAWSQAHPDQKPAYAAQRAVAVILAAKVSLRVEG*
Ga0150985_1077467532	3300012212	Avena Fatua Rhizosphere	AAEQAGLPLVDCYRAGVDAWLGAHPDQGREHAAQKAVAVILAAKVTLRIHGA*
Ga0150985_1082385561	3300012212	Avena Fatua Rhizosphere	GLPLVDCYRAGVDAWLGAHPDQRREHAAPKAVAVILVAKMSLRIDAA*
Ga0150985_1106571852	3300012212	Avena Fatua Rhizosphere	DCYRAGVEAWRRRHPDQSSEYAAKQAVAVILAAKVSLRVEE*
Ga0150985_1162026731	3300012212	Avena Fatua Rhizosphere	AAEQAGLPLVDCYRAGVDAWLGVHPDQRREHAAQKAVAVILVAKVTLRIDGATGSR*
Ga0137386_102574061	3300012351	Vadose Zone Soil	FEAAQEAGLPTVRCYLAGVEAWRRAHPDQRLEYAARQAVAVIHAAKIRLRVEDT*
Ga0137375_110411832	3300012360	Vadose Zone Soil	DCYRAGVEAWRRAHPDQRREYAAKQAVAVILAAKVRLRVDDA*
Ga0137390_103165603	3300012363	Vadose Zone Soil	TVRCYLAAIEAWRRADPDQGPEYAARRAVAVIHAAKVRLRVEDA*
Ga0150984_1036208232	3300012469	Avena Fatua Rhizosphere	RGRQRVHPDHAKHYAAQRAVAVILANKVSLRIEDA*
Ga0137358_103616412	3300012582	Vadose Zone Soil	YGGGVEAWRRIHPDQAHTYAAQRAVAVILGAKVSLHIEDL*
Ga0137358_109469992	3300012582	Vadose Zone Soil	RRLAGAEAWRRVHPDQVHAYAAQRAVEVILAAKASLRIKDA*
Ga0137396_103089692	3300012918	Vadose Zone Soil	LPTVRCYLAGVEAWRRVHPDQIPEYAARQAVAVIHAAKVRLRVEDA*
Ga0137419_111154831	3300012925	Vadose Zone Soil	AGVEAWRRQHPDQSAEYAAKQAVAVILATHAKVQIEE*
Ga0164298_109342592	3300012955	Soil	VEAWRRTHPDQSAEYAAKQAVAVILAAKVSLRVEE*
Ga0164301_109065953	3300012960	Soil	AFESARRSGRPSVECYRAGVEAWRREHPDQSAEYAAKQAVAVILARHAKVQIEG*
Ga0134110_101418801	3300012975	Grasslands Soil	GLPSVDCYRAGVEAWRRTHPDQSAEYAAKQAVAVILAAKVSLRVEE*
Ga0134110_104258161	3300012975	Grasslands Soil	LAGVEAWHRAHPDQSGPYARKQAVAVILGAKVSLRIPDE*
Ga0134073_102255473	3300015356	Grasslands Soil	GVDAWRRAHPDQSAEYAAKQAVAVILAAKVSLRIEE*
Ga0132258_124160851	3300015371	Arabidopsis Rhizosphere	RAGVDAWRRTHPDQSAEYAAKQAVAVILAAKVSLRVEE*
Ga0132255_1036222931	3300015374	Arabidopsis Rhizosphere	EDARQAGQPSVDCYRAGVEAWRRTHPDQSAEYSAKQAVAVILAAKVTLRVEE*
Ga0066667_107328643	3300018433	Grasslands Soil	EAREAGMQSVDCYRAGVDAWRRAHPDQSAEYAAKQAVAVILAVKVSLRVEE
Ga0210400_104809981	3300021170	Soil	MRDDRSPVDCYRAGVEAWRRAHPDQRPGYAAQKAVAVILTARVSLRVDDA
Ga0213882_101383873	3300021362	Exposed Rock	SVECYRAGVAAWRHEHPDQSAEYAAKQAVAVILAAHAKIRIEE
Ga0213876_106467641	3300021384	Plant Roots	GVEAWRRTHPDQSAEYSAKQAVAVILAAKVTLRVEE
Ga0210384_103041191	3300021432	Soil	RAGVDAWRRTHPDQSAEYAAKQAVAVILAVKVSLRVEE
Ga0213879_101494113	3300021439	Bulk Soil	TVECYRAGVAAWRRAHPDHSAEYSAKQAVSAILARYAKLRIEE
Ga0126371_108201932	3300021560	Tropical Forest Soil	YRAGVAAWRREHPDQSPEYAAKQAVTVILAAHAKIRIEE
Ga0126371_123178583	3300021560	Tropical Forest Soil	YRAGVAAWRREHPDQSAEYAAKQAVAVILAAHAKIRIEE
Ga0126371_139036282	3300021560	Tropical Forest Soil	SARRAGRASVECYIAGVQAWRRQHPDQSAEYAAKRAVSVILATHAKLRIEE
Ga0207684_103936382	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	SAGVEAWRRVHPDQTLEYAARRAVAVILAVKVSLRIPDE
Ga0207693_106461843	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	GLPSVDCYRAGVEAWRRTHPDQSAEYAAKQAVAVILAAKVSLRVEE
Ga0207700_117136572	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	MATAVCYRAGVAAWRLAHPDHAATYAGKQAVAVIPAAKASFLLRV
Ga0207702_100083519	3300026078	Corn Rhizosphere	EAVLDAFEEARGAGLPSVDCYRAGVEAWRRRHPDQSSEYAAKQAVAVILAAKVSMRVEE
Ga0257161_10783351	3300026508	Soil	VLKAFESAHRSGRPSVECYRAGVEAWRREHPDQSAEYAAKQAVAVILATHAKVQIEE
Ga0209805_11089683	3300026542	Soil	AGVEAWRRTHPDQSAEYAAKQAVAVILAAKVSLRVEE
Ga0209648_106398832	3300026551	Grasslands Soil	DAFDAAREEGLASVDCYRAGVDAWRRTHPDQSAEYAAKQAVAVILAAKVSLRIEE
Ga0209648_108305471	3300026551	Grasslands Soil	SVDCYRAGVDAWRRAHPDQSAEYAAKQAVAVILAVKVSLRVEE
Ga0209213_10507981	3300027383	Forest Soil	VAAWRRLYPDQTRTYAAQRAVAVILAAKVSLRIPDE
Ga0209528_11226171	3300027610	Forest Soil	AFDAAQAAHLAPVFCYRAGIEAWRRVHPDQRPKHAAQEAVDVILAAKVRLRVDDA
Ga0209275_100087475	3300027884	Soil	VEAWRHQHPDQSAEYAAKQAVAVILATHVKIPIEE
Ga0209526_101646401	3300028047	Forest Soil	EAGLQSVDCYRAGVDAWRRAHPDQSAEYAAKQAVAVILAVKVSLRVEE
Ga0209526_102729673	3300028047	Forest Soil	PPVFCYRAGVEAWRRAHPDQRPEYAATQAVAVILAAKVRLRVDDA
Ga0137415_110674553	3300028536	Vadose Zone Soil	CYRAGVEAWRRTHPDQSAEYAAKQAVAVILTAKVSLRVEE
Ga0222749_107505583	3300029636	Soil	VDCYRAGVDAWRRTHPDQSAEYAAKQAVAVILAVKVSLRVEE
Ga0170834_1070713984	3300031057	Forest Soil	RPSVECYRAGVEAWRRQHPDQTAEYTAKQAVAVILAAHAKIRIEE
Ga0170818_1076660971	3300031474	Forest Soil	RKSTAGCHSAGVEAWRRVHPDQTLEYAARRAVEVILTLKVSLRIPDE
Ga0318538_103531891	3300031546	Soil	YRAGVAAWRREHPDQSPEYAAKQAVAVILATHAKIRIEE
Ga0310686_1073407953	3300031708	Soil	CYRAGVEAWRRTHRDHASQSAARQAVAVILAAKARLRVDQ
Ga0318521_102801773	3300031770	Soil	AGVAAWRREHPDQSPEYAAKQAVAVILATHAKIRIEE
Ga0307478_101651781	3300031823	Hardwood Forest Soil	RGGRPSVDCYRAGVDVWRRTHPDQSAEYAAKQAVDVILKAKFGVRRPD
Ga0307478_108896511	3300031823	Hardwood Forest Soil	IDAFDAARRSGEASVDCYRAGVEAWRRTHPDQSAEYAAKQAVAVILAAKVSLRVEE
Ga0318536_101988341	3300031893	Soil	VECYRAGVVMWRRAHPDQSAEHAASSAVAVILSKHAKIRIEE
Ga0308175_1010514331	3300031938	Soil	RPPVDCYRAGVDVWRRHYPDQAAEYAAKQAVAVILNATSTDLLAVE
Ga0308175_1013965123	3300031938	Soil	FEEARAAGQQSVDCYRAGVEAWRRMHPDQSAEYAAKQAVAVILAAKVSLRVEE
Ga0308174_118802172	3300031939	Soil	CYRAGVEAWRRTHPDQSAEYAAKQAVSVILSAKVSLRVEE
Ga0306924_120451581	3300032076	Soil	YRAAVEVWRREHPDQSPEYAAKRAVAVILTAHAKIQIEE
Ga0318518_103166961	3300032090	Soil	SVECYRAGVAAWRREHPDQSPEYAAKQAVAVILATHAKIRIEE
Ga0307470_103682403	3300032174	Hardwood Forest Soil	AGMQSVDCYRAGVDAWRRAHPDQSAEYAAKQAVAVILAVKVSLRVEE
Ga0307470_118109071	3300032174	Hardwood Forest Soil	AVLEAFEEGRDAGLPSVDCYRAGVEAWRRTHPDQSAEYAAKQAVAVILAAKVSLRVEE

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F101757

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences