Metagenome Family F101748

Basic Information
Family ID	F101748
Family Type	Metagenome
Number of Sequences	102
Average Sequence Length	42 residues
Representative Sequence	TRTKGKFMGQEFSTQERATDVFVKRDGRWQCVLTHLTRFTKK
Number of Associated Samples	95
Number of Associated Scaffolds	102

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	5.88 %
% of genes near scaffold ends (potentially truncated)	92.16 %
% of genes from short scaffolds (< 2000 bps)	89.22 %
Associated GOLD sequencing projects	93
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.48

Most Common Taxonomy
Group	Bacteria (97.059 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (14.706 % of family members)
Environment Ontology (ENVO)	Unclassified (28.431 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (50.980 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 0.00% β-sheet: 47.14% Coil/Unstructured: 52.86%
Feature Viewer

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Pfam ID	Name	% Frequency in 102 Family Scaffolds
PF05697	Trigger_N	36.27
PF05698	Trigger_C	6.86
PF00583	Acetyltransf_1	1.96
PF00903	Glyoxalase	1.96
PF07969	Amidohydro_3	1.96
PF14534	DUF4440	1.96
PF03734	YkuD	0.98
PF01370	Epimerase	0.98
PF13231	PMT_2	0.98
PF02574	S-methyl_trans	0.98
PF06197	DUF998	0.98
PF01625	PMSR	0.98
PF01872	RibD_C	0.98
PF13242	Hydrolase_like	0.98
PF02517	Rce1-like	0.98
PF13884	Peptidase_S74	0.98
PF13243	SQHop_cyclase_C	0.98
PF00589	Phage_integrase	0.98
PF02954	HTH_8	0.98
PF03544	TonB_C	0.98
PF04542	Sigma70_r2	0.98
PF01979	Amidohydro_1	0.98

COG ID	Name	Functional Category	% Frequency in 102 Family Scaffolds
COG0544	FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor)	Posttranslational modification, protein turnover, chaperones [O]	43.14
COG0225	Peptide methionine sulfoxide reductase MsrA	Posttranslational modification, protein turnover, chaperones [O]	0.98
COG0262	Dihydrofolate reductase	Coenzyme transport and metabolism [H]	0.98
COG0568	DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)	Transcription [K]	0.98
COG0646	Methionine synthase I (cobalamin-dependent), methyltransferase domain	Amino acid transport and metabolism [E]	0.98
COG0810	Periplasmic protein TonB, links inner and outer membranes	Cell wall/membrane/envelope biogenesis [M]	0.98
COG1191	DNA-directed RNA polymerase specialized sigma subunit	Transcription [K]	0.98
COG1266	Membrane protease YdiL, CAAX protease family	Posttranslational modification, protein turnover, chaperones [O]	0.98
COG1376	Lipoprotein-anchoring transpeptidase ErfK/SrfK	Cell wall/membrane/envelope biogenesis [M]	0.98
COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	Transcription [K]	0.98
COG1985	Pyrimidine reductase, riboflavin biosynthesis	Coenzyme transport and metabolism [H]	0.98
COG2040	Homocysteine/selenocysteine methylase (S-methylmethionine-dependent)	Amino acid transport and metabolism [E]	0.98
COG3034	Murein L,D-transpeptidase YafK	Cell wall/membrane/envelope biogenesis [M]	0.98
COG3371	Uncharacterized membrane protein	Function unknown [S]	0.98
COG4449	Predicted protease, Abi (CAAX) family	General function prediction only [R]	0.98
COG4941	Predicted RNA polymerase sigma factor, contains C-terminal TPR domain	Transcription [K]	0.98

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	98.04 %
Unclassified	root	N/A	1.96 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	98.04 %
Unclassified	root	N/A	1.96 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	97.06 %
Unclassified	root	N/A	1.96 %
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	0.98 %

Name	Rank	Taxonomy	Distribution
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	39.22 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	2.94 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	2.94 %
Unclassified	root	N/A	1.96 %
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	0.98 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	39.22 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	2.94 %
Unclassified	root	N/A	1.96 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	0.98 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.98 %
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	0.98 %

Name	Rank	Taxonomy	Distribution
unclassified Verrucomicrobia	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia	30.39 %
Spartobacteria	class	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria	7.84 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2.94 %
Unclassified	root	N/A	1.96 %
Caulobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales	0.98 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.98 %
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	0.98 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	30.39 %
Chthoniobacterales	order	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales	7.84 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2.94 %
Unclassified	root	N/A	1.96 %
unclassified Deltaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria	0.98 %
Caulobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae	0.98 %
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	0.98 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	30.39 %
Chthoniobacteraceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae	7.84 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2.94 %
Unclassified	root	N/A	1.96 %
Deltaproteobacteria bacterium RBG_16_49_23	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium RBG_16_49_23	0.98 %
Phenylobacterium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae → Phenylobacterium	0.98 %
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	0.98 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	30.39 %
Candidatus Udaeobacter	genus	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter	2.94 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2.94 %
Chthoniobacter	genus	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Chthoniobacter	1.96 %
Unclassified	root	N/A	1.96 %
unclassified Phenylobacterium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae → Phenylobacterium → unclassified Phenylobacterium	0.98 %
Deltaproteobacteria bacterium RBG_16_49_23	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium RBG_16_49_23	0.98 %
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	0.98 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	30.39 %
Candidatus Udaeobacter copiosus	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus	2.94 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2.94 %
Chthoniobacter flavus	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Chthoniobacter → Chthoniobacter flavus	1.96 %
Unclassified	root	N/A	1.96 %
Phenylobacterium sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae → Phenylobacterium → unclassified Phenylobacterium → Phenylobacterium sp.	0.98 %
Deltaproteobacteria bacterium RBG_16_49_23	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium RBG_16_49_23	0.98 %
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	0.98 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000363\|ICChiseqgaiiFebDRAFT_10647214	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae → Phenylobacterium → unclassified Phenylobacterium → Phenylobacterium sp.	597	Open in IMG/M
3300000550\|F24TB_10078005	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	739	Open in IMG/M
3300000597\|AF_2010_repII_A1DRAFT_10073813	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Chthoniobacter → Chthoniobacter flavus	861	Open in IMG/M
3300000709\|KanNP_Total_F14TBDRAFT_1023267	All Organisms → cellular organisms → Bacteria → Proteobacteria	519	Open in IMG/M
3300001867\|JGI12627J18819_10214879	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	775	Open in IMG/M
3300003203\|JGI25406J46586_10243385	All Organisms → cellular organisms → Bacteria	528	Open in IMG/M
3300004091\|Ga0062387_100092597	All Organisms → cellular organisms → Bacteria	1602	Open in IMG/M
3300004463\|Ga0063356_104881187	All Organisms → cellular organisms → Bacteria	576	Open in IMG/M
3300004479\|Ga0062595_100074485	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1685	Open in IMG/M
3300005180\|Ga0066685_10057372	All Organisms → cellular organisms → Bacteria	2516	Open in IMG/M
3300005447\|Ga0066689_10252215	All Organisms → cellular organisms → Bacteria	1085	Open in IMG/M
3300005450\|Ga0066682_10069245	All Organisms → cellular organisms → Bacteria	2174	Open in IMG/M
3300005536\|Ga0070697_101160919	All Organisms → cellular organisms → Bacteria	688	Open in IMG/M
3300005552\|Ga0066701_10196741	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1234	Open in IMG/M
3300005555\|Ga0066692_10570507	All Organisms → cellular organisms → Archaea	713	Open in IMG/M
3300005574\|Ga0066694_10139524	All Organisms → cellular organisms → Bacteria	1146	Open in IMG/M
3300005587\|Ga0066654_10685665	All Organisms → cellular organisms → Bacteria	573	Open in IMG/M
3300005602\|Ga0070762_11047165	All Organisms → cellular organisms → Bacteria	561	Open in IMG/M
3300005764\|Ga0066903_102048929	All Organisms → cellular organisms → Bacteria	1100	Open in IMG/M
3300005764\|Ga0066903_107023777	All Organisms → cellular organisms → Bacteria	584	Open in IMG/M
3300006028\|Ga0070717_12025116	All Organisms → cellular organisms → Bacteria	519	Open in IMG/M
3300006034\|Ga0066656_10367662	All Organisms → cellular organisms → Bacteria	930	Open in IMG/M
3300006034\|Ga0066656_10885819	All Organisms → cellular organisms → Bacteria	572	Open in IMG/M
3300006173\|Ga0070716_100541722	All Organisms → cellular organisms → Bacteria	866	Open in IMG/M
3300006237\|Ga0097621_102423068	All Organisms → cellular organisms → Bacteria	502	Open in IMG/M
3300006797\|Ga0066659_10069282	All Organisms → cellular organisms → Bacteria	2301	Open in IMG/M
3300006904\|Ga0075424_100200930	All Organisms → cellular organisms → Bacteria	2117	Open in IMG/M
3300007255\|Ga0099791_10418447	All Organisms → cellular organisms → Bacteria	646	Open in IMG/M
3300009012\|Ga0066710_101384684	All Organisms → cellular organisms → Bacteria	1090	Open in IMG/M
3300009137\|Ga0066709_104201329	All Organisms → cellular organisms → Bacteria	524	Open in IMG/M
3300009147\|Ga0114129_10922911	All Organisms → cellular organisms → Bacteria	1105	Open in IMG/M
3300010043\|Ga0126380_11509632	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	595	Open in IMG/M
3300010359\|Ga0126376_12923444	Not Available	527	Open in IMG/M
3300010361\|Ga0126378_12496080	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	590	Open in IMG/M
3300010362\|Ga0126377_13233300	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	526	Open in IMG/M
3300010376\|Ga0126381_101380839	All Organisms → cellular organisms → Bacteria	1018	Open in IMG/M
3300012189\|Ga0137388_10597841	All Organisms → cellular organisms → Bacteria	1026	Open in IMG/M
3300012198\|Ga0137364_10250125	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium RBG_16_49_23	1310	Open in IMG/M
3300012199\|Ga0137383_10798111	All Organisms → cellular organisms → Bacteria	689	Open in IMG/M
3300012200\|Ga0137382_11011860	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	596	Open in IMG/M
3300012205\|Ga0137362_11283730	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	617	Open in IMG/M
3300012209\|Ga0137379_11037418	All Organisms → cellular organisms → Bacteria	725	Open in IMG/M
3300012209\|Ga0137379_11823603	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	502	Open in IMG/M
3300012361\|Ga0137360_10630821	All Organisms → cellular organisms → Bacteria	918	Open in IMG/M
3300012362\|Ga0137361_10273676	All Organisms → cellular organisms → Bacteria	1542	Open in IMG/M
3300012363\|Ga0137390_10133767	All Organisms → cellular organisms → Bacteria	2459	Open in IMG/M
3300012512\|Ga0157327_1024776	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	706	Open in IMG/M
3300012532\|Ga0137373_10931831	All Organisms → cellular organisms → Bacteria	635	Open in IMG/M
3300012918\|Ga0137396_11293108	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	507	Open in IMG/M
3300012941\|Ga0162652_100041321	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	727	Open in IMG/M
3300012971\|Ga0126369_10284296	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae	1646	Open in IMG/M
3300012971\|Ga0126369_13717282	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	500	Open in IMG/M
3300012975\|Ga0134110_10177064	All Organisms → cellular organisms → Bacteria	888	Open in IMG/M
3300012977\|Ga0134087_10028708	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae	2088	Open in IMG/M
3300012988\|Ga0164306_11335181	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	607	Open in IMG/M
3300013096\|Ga0157307_1144131	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	548	Open in IMG/M
3300013104\|Ga0157370_10237221	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae	1688	Open in IMG/M
3300014969\|Ga0157376_12430829	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	563	Open in IMG/M
3300015051\|Ga0137414_1124108	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	515	Open in IMG/M
3300015264\|Ga0137403_10224869	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus	1797	Open in IMG/M
3300015358\|Ga0134089_10375966	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	603	Open in IMG/M
3300015371\|Ga0132258_12248291	All Organisms → cellular organisms → Bacteria	1368	Open in IMG/M
3300015371\|Ga0132258_12451456	All Organisms → cellular organisms → Bacteria	1306	Open in IMG/M
3300015374\|Ga0132255_102310907	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	820	Open in IMG/M
3300016422\|Ga0182039_11177242	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	692	Open in IMG/M
3300018061\|Ga0184619_10103518	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus	1280	Open in IMG/M
3300018071\|Ga0184618_10425081	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	561	Open in IMG/M
3300018073\|Ga0184624_10482279	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	541	Open in IMG/M
3300018433\|Ga0066667_10757624	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	820	Open in IMG/M
3300018468\|Ga0066662_11171155	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	775	Open in IMG/M
3300019361\|Ga0173482_10723064	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	518	Open in IMG/M
3300019882\|Ga0193713_1107751	All Organisms → cellular organisms → Bacteria	773	Open in IMG/M
3300019888\|Ga0193751_1139885	All Organisms → cellular organisms → Bacteria	880	Open in IMG/M
3300020008\|Ga0193757_1004016	All Organisms → cellular organisms → Bacteria	1281	Open in IMG/M
3300020018\|Ga0193721_1000496	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus	11140	Open in IMG/M
3300020018\|Ga0193721_1124938	All Organisms → cellular organisms → Bacteria	643	Open in IMG/M
3300020059\|Ga0193745_1122506	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	540	Open in IMG/M
3300020062\|Ga0193724_1063767	All Organisms → cellular organisms → Bacteria	774	Open in IMG/M
3300020581\|Ga0210399_10006266	All Organisms → cellular organisms → Bacteria	9280	Open in IMG/M
3300020583\|Ga0210401_11400780	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	556	Open in IMG/M
3300021405\|Ga0210387_10243132	All Organisms → cellular organisms → Bacteria	1573	Open in IMG/M
3300021479\|Ga0210410_11426674	All Organisms → cellular organisms → Bacteria	585	Open in IMG/M
3300021559\|Ga0210409_10270961	Not Available	1534	Open in IMG/M
3300021560\|Ga0126371_10085695	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3102	Open in IMG/M
3300022694\|Ga0222623_10049885	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1609	Open in IMG/M
3300022694\|Ga0222623_10304969	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	611	Open in IMG/M
3300025931\|Ga0207644_10400905	All Organisms → cellular organisms → Bacteria	1121	Open in IMG/M
3300025934\|Ga0207686_11171214	All Organisms → cellular organisms → Bacteria	628	Open in IMG/M
3300026332\|Ga0209803_1112042	All Organisms → cellular organisms → Bacteria	1103	Open in IMG/M
3300026480\|Ga0257177_1090151	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	503	Open in IMG/M
3300026498\|Ga0257156_1026225	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1171	Open in IMG/M
3300028718\|Ga0307307_10293169	All Organisms → cellular organisms → Bacteria	523	Open in IMG/M
3300028828\|Ga0307312_10006375	All Organisms → cellular organisms → Bacteria	6368	Open in IMG/M
3300031680\|Ga0318574_10264767	All Organisms → cellular organisms → Bacteria	996	Open in IMG/M
3300031754\|Ga0307475_10672897	All Organisms → cellular organisms → Bacteria	826	Open in IMG/M
3300031954\|Ga0306926_11786886	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	698	Open in IMG/M
3300032001\|Ga0306922_10748478	All Organisms → cellular organisms → Bacteria	1025	Open in IMG/M
3300032035\|Ga0310911_10004398	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Chthoniobacter → Chthoniobacter flavus	6004	Open in IMG/M
3300032180\|Ga0307471_104322747	All Organisms → cellular organisms → Bacteria	502	Open in IMG/M
3300032261\|Ga0306920_103862105	All Organisms → cellular organisms → Bacteria	547	Open in IMG/M
3300033551\|Ga0247830_11116714	All Organisms → cellular organisms → Bacteria	629	Open in IMG/M
3300034115\|Ga0364945_0186213	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	631	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	87.25%
Host-Associated	Host-Associated	12.75%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	81.37%
Plants	Host-Associated → Plants	12.75%
Aquatic	Environmental → Aquatic	5.88%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	79.41%
Rhizoplane	Host-Associated → Plants → Rhizoplane	5.88%
Rhizosphere	Host-Associated → Plants → Rhizosphere	5.88%
Sediment	Environmental → Aquatic → Sediment	4.90%
Freshwater	Environmental → Aquatic → Freshwater	0.98%
Floodplain	Environmental → Terrestrial → Floodplain	0.98%
Agricultural Field	Environmental → Terrestrial → Agricultural Field	0.98%
Roots	Host-Associated → Plants → Roots	0.98%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	70.59%
Loam	Environmental → Terrestrial → Soil → Loam	8.82%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	4.90%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	4.90%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	2.94%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	2.94%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	0.98%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	0.98%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified	0.98%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.98%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.98%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	37.25%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	15.69%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	15.69%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	4.90%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	4.90%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	3.92%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	2.94%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	2.94%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	2.94%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	1.96%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	0.98%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.98%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.98%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	0.98%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified	0.98%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.98%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.98%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	14.71%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	11.76%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	11.76%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	8.82%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	7.84%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	3.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	3.92%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	2.94%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	2.94%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.94%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	2.94%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	1.96%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.96%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	1.96%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	1.96%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	1.96%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	0.98%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.98%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.98%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.98%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.98%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	0.98%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	0.98%
Soil	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified → Soil	0.98%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	0.98%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.98%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere	0.98%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.98%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.98%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.98%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.98%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.98%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000363	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000550	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU amended with acetate total DNA F2.4 TB clc assemly	Environmental	Open in IMG/M
3300000597	Forest soil microbial communities from Amazon forest - 2010 replicate II A1	Environmental	Open in IMG/M
3300000709	Amended soil microbial communities from Kansas Great Prairies, USA - Total DNA F1.4 TB amended with BrdU and acetate no abondance	Environmental	Open in IMG/M
3300001867	Texas A ecozone_OM1H0_M2 (Combined assembly for Texas A ecozone Site metagenome samples, ASSEMBLY_DATE=20130705)	Environmental	Open in IMG/M
3300003203	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2	Host-Associated	Open in IMG/M
3300004091	Coassembly of ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300005180	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134	Environmental	Open in IMG/M
3300005447	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_138	Environmental	Open in IMG/M
3300005450	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_131	Environmental	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005552	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_150	Environmental	Open in IMG/M
3300005555	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_141	Environmental	Open in IMG/M
3300005574	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_143	Environmental	Open in IMG/M
3300005587	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_103	Environmental	Open in IMG/M
3300005602	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006034	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_105	Environmental	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006237	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2)	Host-Associated	Open in IMG/M
3300006797	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108	Environmental	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300007255	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012198	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaG	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012200	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012209	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012363	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG	Environmental	Open in IMG/M
3300012512	Arabidopsis rhizosphere microbial communities from North Carolina - M.Oy.3.old.270510	Host-Associated	Open in IMG/M
3300012532	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_80_16 metaG	Environmental	Open in IMG/M
3300012918	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaG	Environmental	Open in IMG/M
3300012941	Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t4i015	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300012975	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_11112015	Environmental	Open in IMG/M
3300012977	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_20cm_5_24_1 metaG	Environmental	Open in IMG/M
3300012988	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_242_MG	Environmental	Open in IMG/M
3300013096	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S178-409R-2	Environmental	Open in IMG/M
3300013104	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG	Host-Associated	Open in IMG/M
3300014969	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG	Host-Associated	Open in IMG/M
3300015051	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300015264	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015358	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_40cm_5_24_1 metaG	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300018061	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60_b1	Environmental	Open in IMG/M
3300018071	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_b1	Environmental	Open in IMG/M
3300018073	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_5_b1	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300019361	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S133-311R-2 (version 2)	Environmental	Open in IMG/M
3300019882	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H3a2	Environmental	Open in IMG/M
3300019888	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1c2	Environmental	Open in IMG/M
3300020008	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H1m2	Environmental	Open in IMG/M
3300020018	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2s2	Environmental	Open in IMG/M
3300020059	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1a2	Environmental	Open in IMG/M
3300020062	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2a1	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental	Open in IMG/M
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300022694	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_30_coex	Environmental	Open in IMG/M
3300025931	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025934	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026332	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_138 (SPAdes)	Environmental	Open in IMG/M
3300026480	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NL-07-B	Environmental	Open in IMG/M
3300026498	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NI-49-A	Environmental	Open in IMG/M
3300028718	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_194	Environmental	Open in IMG/M
3300028828	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_202	Environmental	Open in IMG/M
3300031680	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f22	Environmental	Open in IMG/M
3300031754	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032035	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF170	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300033551	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day5	Environmental	Open in IMG/M
3300034115	Sediment microbial communities from East River floodplain, Colorado, United States - 29_s17	Environmental	Open in IMG/M

Geographical Distribution

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Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.48
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.48
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NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F101748

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
ICChiseqgaiiFebDRAFT_106472142	3300000363	Soil	LTTTKGKFMEQDFTSCERATDIFVKQNDRWQCVFTQLTRFTKK*
F24TB_100780052	3300000550	Soil	GQDFASCERATDIFVKQADRWQCVFTQLTRFAKK*
AF_2010_repII_A1DRAFT_100738132	3300000597	Forest Soil	LTKTKAKFAGQEFTTRERXTDVFVRRGGHWQCVFSQLTTFKKK*
KanNP_Total_F14TBDRAFT_10232672	3300000709	Soil	TTKGKFMGQDFASCERATDIFVKQADRWQCVFTQLTRFAKK*
JGI12627J18819_102148791	3300001867	Forest Soil	MGQDFTTQERATDVLVKKDGRWQVVFSQLTRFNKK*
JGI25406J46586_102433851	3300003203	Tabebuia Heterophylla Rhizosphere	ITAVTRAKGKFMEQEFSTQERATDVFVKRGGRWQCVLTHLTRLAEK*
Ga0062387_1000925971	3300004091	Bog Forest Soil	AAVTALTTTKGKYMGQEFTSQERATDMFVKKDGRWQCIVSQLTRFTKK*
Ga0063356_1048811872	3300004463	Arabidopsis Thaliana Rhizosphere	TKGKFMGQDFTSCERATDIFVKQNDRWQCVFTQLTRFTKK*
Ga0062595_1000744852	3300004479	Soil	MGQDFTTQERATDVLVKRDGRWQVVFSQLTRFNKK*
Ga0066685_100573721	3300005180	Soil	NTAVVTGLTATKGKFMGQDFTACERATDIFVKHTDRWQCVFTQLTRFAKK*
Ga0066689_102522153	3300005447	Soil	TGLTTSKGKFMGQDFTSCERATDIFVKQSDRWQCVFTQLTRFTKK*
Ga0066682_100692453	3300005450	Soil	TTKGKFMGQDFASCERATDIFVKQTDRWQCVFTQLTRFSKK*
Ga0070697_1011609191	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	GLTTSKGKFMGQEFTTRERATDIFVNQHGRWQCVFSQLTRVTKK*
Ga0066701_101967412	3300005552	Soil	ITALTRTKGEFMGQAFSTQERATDVFVRLDGRWQCVLSQLTRFSKK*
Ga0066692_105705071	3300005555	Soil	DYLGKEFKTRERATDVFVKKDGRWQCVLTHLTTFTKKT*
Ga0066694_101395242	3300005574	Soil	TKYLGKEFTTHERATDVFVKKDERWQCVLTHLTTLAKKT*
Ga0066654_106856652	3300005587	Soil	GVTRTKGKFMGQEFSTQERATDVFVKRDGRWQCVLTHLTRFPEK*
Ga0070762_110471651	3300005602	Soil	KFSGQPFTTHERATDVFVKQDGRWHCVLSQLTKVADK*
Ga0066903_1020489292	3300005764	Tropical Forest Soil	SKGKFMGHEFTTHERSTDFFVKLDGQWRCVLTQLTGFSKK*
Ga0066903_1070237771	3300005764	Tropical Forest Soil	TRTKGKFMGQEFSTQERGTDVFVKRDGRWQCVLTHLTRLPEK*
Ga0070717_120251161	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	TAITRTKGKFMGQEFSTQERATDVFVKRDGRWQCVLTHLTRLPNK*
Ga0066656_103676621	3300006034	Soil	PTKGKFAGQEFTTRERATDVFVKQGGRWQCAFSQLTKFNKK*
Ga0066656_108858191	3300006034	Soil	STRGKFAGQEFATQERATDFFLKRHGRWQCGFSQLTTFKKK*
Ga0070716_1005417222	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	MRTKGKFVGQEFTTQERATDFFVKQGGRWRCGFSQLTKFSKK*
Ga0097621_1024230682	3300006237	Miscanthus Rhizosphere	FAGQPLATEERATDVFVKRDGRWQCVFSQLTTLKKKS*
Ga0066659_100692821	3300006797	Soil	TKGKFMGQDFASCERATDIFVKHTDRWQCVFTQLTRFTKR*
Ga0075424_1002009303	3300006904	Populus Rhizosphere	TKGKFMGQEFSTEERATDFFVRLDGQWQYVLTQLTRFTKQ*
Ga0099791_104184471	3300007255	Vadose Zone Soil	DTAIVTALTTTKGKFAGQEFSTRERATDFFVKQGGRWQCVFSQLTKFNRK*
Ga0066710_1013846841	3300009012	Grasslands Soil	FMGQDFASCERATDIFVKQTGCWQCVFTQLTRFTKK
Ga0066709_1042013291	3300009137	Grasslands Soil	GQDFTSCERATDIFVKQSDRWQCVFTQLTRSTKN*
Ga0114129_109229113	3300009147	Populus Rhizosphere	TALTRTKAKFAEQEFTTQERATDVFVRRAGRWQCVFSQLTKLKAK*
Ga0126380_115096321	3300010043	Tropical Forest Soil	RTKGKFMGQEFSTQERATDVFVKRDGRWQCVLTHLTRFSKK*
Ga0126376_129234441	3300010359	Tropical Forest Soil	KYMNREFETRERTTDVFVKREGRWQCVITHLTKFSKQ*
Ga0126378_124960801	3300010361	Tropical Forest Soil	GKFMGQDFSTQERATDVFVKRDGRWQGVLSHLTRLTKK*
Ga0126377_132333001	3300010362	Tropical Forest Soil	KAKFSGQEFTTEERATDVFVKRAGRWQCVFSQLTKSKPK*
Ga0126381_1013808391	3300010376	Tropical Forest Soil	FTGQDFSTQERATDVFIKRDGRWQCVISHLTRFAKK*
Ga0137388_105978411	3300012189	Vadose Zone Soil	TAVVTGLTTTKGKFMGQDFTSCERATDIFVKQNDRWQCVFTQLTRFTKK*
Ga0137364_102501251	3300012198	Vadose Zone Soil	KGKFMGQDFTSCERATDIFVKQNDRWQCVFTQLTRFTKK*
Ga0137383_107981112	3300012199	Vadose Zone Soil	VVTGLTTSKGKFMGQDFASCERATDIFVKQADRWQCVFTQLTRFTKK*
Ga0137382_110118601	3300012200	Vadose Zone Soil	TKGKFMGQEFSTQERATDVFVKRDGRWQCVLTHLTRFPSK*
Ga0137362_112837301	3300012205	Vadose Zone Soil	TAVVTGLTTTKGKFRGQDFASCERATDIFVKRNDRWQCVFTQLTRFTKK*
Ga0137379_110374181	3300012209	Vadose Zone Soil	AVVTALTATKGKFAGQEFTTRERATDVFVKQGGRWQCVFSQLTKFNKK*
Ga0137379_118236031	3300012209	Vadose Zone Soil	GVTRTKGKFMGQEFSTQERATDVFVKRDGRWQCVLTHLTRFPSK*
Ga0137360_106308212	3300012361	Vadose Zone Soil	GQEFTTRERATDVFVKQGGRWQCVFSQLTKFNKK*
Ga0137361_102736761	3300012362	Vadose Zone Soil	NTAVVTGLTTTKGKFMGQDFASCERATDIFVKQTGRWQCVFTQLTRFTKK*
Ga0137390_101337674	3300012363	Vadose Zone Soil	FVTSVTATKGEFMGQEFSTRERATDVFVKQNGRWQCVFSQLTRFSKTK*
Ga0157327_10247761	3300012512	Arabidopsis Rhizosphere	AVTCTKGKFMGQEFSTRERATDVFVKRDGRWQCVVTHLTRVANK*
Ga0137373_109318312	3300012532	Vadose Zone Soil	AVVSGLTRTKGKFMGQDFSTQERATDVFVMKNGRWQCVFSQLTRFIK*
Ga0137396_112931081	3300012918	Vadose Zone Soil	NTAVVTGLTTTKGTFMGQDFASCERATDIFVKQTDRWQCVFTQLTRFTKK*
Ga0162652_1000413211	3300012941	Soil	GQEFSTQERATDVFTKRDGRWQCVLTHLTRFPKK*
Ga0126369_102842963	3300012971	Tropical Forest Soil	TAITRTKGKFMGQEFKTEERATDFFVRFDGQWRCVLTQLTGFTKK*
Ga0126369_137172821	3300012971	Tropical Forest Soil	STKGKFMGQEFSTRERATDVFVKREGRWQCVLTHLTRLPEK*
Ga0134110_101770642	3300012975	Grasslands Soil	LTTTKGKFAGQEFTTRERATDVFVKQGGRWQCVFSQLTKFNKK*
Ga0134087_100287083	3300012977	Grasslands Soil	TKGKFAGQEFTTRERATDVFVKQGGRWQCAFSQLTKFNKK*
Ga0164306_113351812	3300012988	Soil	KFMGQEFSTQERATDVFVKREGRWQCVLTHLTGFPRK*
Ga0157307_11441311	3300013096	Soil	TRTKGKFMGQEFSTQERATDVFVKSDGRWQCVLTHLTRFPKK*
Ga0157370_102372211	3300013104	Corn Rhizosphere	GKFMGQEFSTQERATDVFVKRDGRWQCVLTHLTRFPNK*
Ga0157376_124308291	3300014969	Miscanthus Rhizosphere	RTKGKFMGHDFSTQERATDVFVKRDGRWQCVLTHLTRFPKK*
Ga0137414_11241081	3300015051	Vadose Zone Soil	MGQEFSAQERATDVFVKCDGRWQCVLTHLTRFSKK*
Ga0137403_102248691	3300015264	Vadose Zone Soil	TTSKGKFMGQDFTSCERATDIFVKQADCWQCVFTQLTRFTKK*
Ga0134089_103759661	3300015358	Grasslands Soil	RTKGKFMGQEFSTQERATDVFVKRDGRWQCVLTHLTRFPTK*
Ga0132258_122482912	3300015371	Arabidopsis Rhizosphere	MGQEFSTQERATDVFVKREGQWQCVLTHLTGFPKK*
Ga0132258_124514561	3300015371	Arabidopsis Rhizosphere	MGQGFTTHERATDVLARLNGRWLCVFSQLTRVASP*
Ga0132255_1023109071	3300015374	Arabidopsis Rhizosphere	LTRTKAKFAGQEVTTQERATDVFVRRAGRWQCVFSQLTKFDAK*
Ga0182039_111772422	3300016422	Soil	AGQEFATQERATDFFIKREGRWQCVFSQLTTFKKK
Ga0184619_101035181	3300018061	Groundwater Sediment	TAVVTGLTTTKGKFMGQDFASRERATDIFVKQGDRWQCVFTQLTRFTKK
Ga0184618_104250812	3300018071	Groundwater Sediment	TELTTTKGKFMGQDFASRERATDVFVKQTDRWQCVFTQLTRFTKK
Ga0184624_104822791	3300018073	Groundwater Sediment	MGQEFSTQERATDVFVKRDGRWQCVLTHLTRFTKK
Ga0066667_107576241	3300018433	Grasslands Soil	NNALVTVLTTGKGKFMGQDFTSCERATDIFVKQSDRWQCVFTQLTRSTKK
Ga0066662_111711552	3300018468	Grasslands Soil	KGEFMGQAFSTQERATDVFVRLDGRWQCVLSQLTRFSKK
Ga0173482_107230641	3300019361	Soil	TRTKGKFMGQEFSTQERATDVFVKRDGRWQCVLTHLTRFPNK
Ga0193713_11077512	3300019882	Soil	GLTTTKGKFMGQDFASFERATDIFVKQGDRWQCVFTQLTRFTKK
Ga0193751_11398852	3300019888	Soil	GKFMGQDFTSCERATDIFVKQNDRWQCVFTQLTRFTKK
Ga0193757_10040161	3300020008	Soil	TRTKGKFMGQEFSTQERATDVFVKRDGRWQCVLTHLTRFTKK
Ga0193721_10004961	3300020018	Soil	YENTALVTGLTTSKGKFMGQDFTSCERATDIFVKQVDRWQCVFTQLTRFTKK
Ga0193721_11249381	3300020018	Soil	TTTKGKFMGQDFASCERATDILVKQTDRWQCVLTQLTRFAKK
Ga0193745_11225062	3300020059	Soil	NTAVVTGLTTTKGKFMGQDFASCERATDIFVKQTDRWQCVFTQLTRFTKK
Ga0193724_10637671	3300020062	Soil	TGLTTTKGKFMGQDFTSCERATDVFVKQNDRWQCVFTQLTRFAKK
Ga0210399_100062667	3300020581	Soil	MGQDFTTQERATDVLVKKDGRWQAVFSQLTRFNKK
Ga0210401_114007801	3300020583	Soil	TTKGKFSGQAFTTQERATDVFVKQNGRWLCALSQLTRFTKK
Ga0210387_102431322	3300021405	Soil	KGKFMGQEFSTQERATDVFVKCEGRWRCVLTHLTRLPNK
Ga0210410_114266742	3300021479	Soil	FMGQEFTTQERATDFFIKQGGRWQCVFSQLTKFDKK
Ga0210409_102709611	3300021559	Soil	RTKGKFMGQDFTTQERATDVLVKRDGRWQVVFSQLTRFNKK
Ga0126371_100856954	3300021560	Tropical Forest Soil	TSSKAKYMGQEFSTRERATDVFVKLDGKWQCVITHLTTLTKK
Ga0222623_100498853	3300022694	Groundwater Sediment	GNTAVVTGLTTTKGKFMGQDFASCERATDIFVKQTDRWQCVFTQLTRFTKK
Ga0222623_103049692	3300022694	Groundwater Sediment	NTAVVTGLTTTKGKFMGQDFASCERATDIFVKQADRWQCVFTQLTRFAKK
Ga0207644_104009052	3300025931	Switchgrass Rhizosphere	KGKFMGQEFSTHERATDVFVKRDGRWQCVLTHLTRFAKK
Ga0207686_111712141	3300025934	Miscanthus Rhizosphere	RSKGKFMGQEFSTQERATDVFVKRDGRWQCVLTHLTRFTK
Ga0209803_11120421	3300026332	Soil	TGLTTSKGKFMGQDFTSCERATDIFVKQSDRWQCVFTQLTRFTKK
Ga0257177_10901511	3300026480	Soil	NTAMVTALTKTKGKFSGQVFTTQERATDIFVKQNGRWQCALSQLTKFTKK
Ga0257156_10262253	3300026498	Soil	VVTGLTTSKGKFMGQDFASCERATDIFVKQNDRWQCVFTQLTRFTKK
Ga0307307_102931692	3300028718	Soil	TAVVTGLTTSKGKFMGQDFTSCERATDIFVKQADRWRCVFTQLTRFTKK
Ga0307312_100063751	3300028828	Soil	MGQDFTSCERATDIFVKQDDRWRCVFTQLTRFTNRSS
Ga0318574_102647672	3300031680	Soil	VRSYGNSAVVTALMKTKGKFAGQEFTTRERATDFFVKQGGCWQCVFSQPTKFNRK
Ga0307475_106728972	3300031754	Hardwood Forest Soil	TAVVTGLTTSKGKFMGQDFTSCERATDIFVKQDDRWQCVFTQLTRFTKK
Ga0306926_117868862	3300031954	Soil	TAITSTKGKFMGQEFSTRERATDVFVKRDERWECVLTHLTRFTTK
Ga0306922_107484782	3300032001	Soil	AVVTTITSTKVRFAGQEFATQERATDFFIKREGRWQCVFSQLTTFKKK
Ga0310911_100043981	3300032035	Soil	LRVRSYGNSAVVTALMKTKGKFAGQEFTTRERATDFFVKQGGCWQCVFSQPTKFNRK
Ga0307471_1043227472	3300032180	Hardwood Forest Soil	LGQEFTTHERSTDVFVKRGGQWRCVLTQLTGFKKQ
Ga0306920_1038621051	3300032261	Soil	KFMGQDFTSCERATDIFVKQADRWQCVFTQLTRFTKK
Ga0247830_111167142	3300033551	Soil	MGQDFASCERATDIFVKQTDRWQCVLTQLTRFAKK
Ga0364945_0186213_493_600	3300034115	Sediment	MGQDFRTQERATDVFVKRDGRWQCVLTHLTRFPKK

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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