 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Family ID | F101743 |
| Family Type | Metagenome / Metatranscriptome |
| Number of Sequences | 102 |
| Average Sequence Length | 61 residues |
| Representative Sequence | QAVDLRRPSRLGEGTGRALRLVRELADFTARGQAPPADLEPLVDAVRAGRFARAALPGQ |
| Number of Associated Samples | 88 |
| Number of Associated Scaffolds | 102 |
| Quality Assessment | |
|---|---|
| Transcriptomic Evidence | Yes |
| Most common taxonomic group | Unclassified |
| % of genes with valid RBS motifs | 0.00 % |
| % of genes near scaffold ends (potentially truncated) | 3.92 % |
| % of genes from short scaffolds (< 2000 bps) | 3.92 % |
| Associated GOLD sequencing projects | 85 |
| AlphaFold2 3D model prediction | Yes |
| 3D model pTM-score | 0.55 |
| Hidden Markov Model |
|---|
| Powered by Skylign |
| Most Common Taxonomy | |
|---|---|
| Group | Unclassified (96.078 % of family members) |
| NCBI Taxonomy ID | N/A |
| Taxonomy | N/A |
| Most Common Ecosystem | |
|---|---|
| GOLD Ecosystem | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (28.431 % of family members) |
| Environment Ontology (ENVO) | Unclassified (33.333 % of family members) |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) (40.196 % of family members) |
| ⦗Top⦘ |
| ⦗Top⦘ |
| Predicted Topology & Secondary Structure | |||||
|---|---|---|---|---|---|
| Classification: | Globular | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 37.93% β-sheet: 0.00% Coil/Unstructured: 62.07% | Feature Viewer |
|
|
|||||
| Powered by Feature Viewer | |||||
| Structure Viewer | |
|---|---|
|
| |
| Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.55 |
| Powered by PDBe Molstar | |
| ⦗Top⦘ |
| Pfam ID | Name | % Frequency in 102 Family Scaffolds |
|---|---|---|
| PF00221 | Lyase_aromatic | 11.76 |
| PF02574 | S-methyl_trans | 10.78 |
| PF07702 | UTRA | 7.84 |
| PF00392 | GntR | 6.86 |
| PF02894 | GFO_IDH_MocA_C | 6.86 |
| PF13193 | AMP-binding_C | 6.86 |
| PF13344 | Hydrolase_6 | 5.88 |
| PF01381 | HTH_3 | 3.92 |
| PF00743 | FMO-like | 2.94 |
| PF04237 | YjbR | 1.96 |
| PF07885 | Ion_trans_2 | 1.96 |
| PF00496 | SBP_bac_5 | 0.98 |
| PF08281 | Sigma70_r4_2 | 0.98 |
| PF03129 | HGTP_anticodon | 0.98 |
| PF12323 | HTH_OrfB_IS605 | 0.98 |
| PF00383 | dCMP_cyt_deam_1 | 0.98 |
| PF01175 | Urocanase | 0.98 |
| PF02146 | SIR2 | 0.98 |
| PF01544 | CorA | 0.98 |
| COG ID | Name | Functional Category | % Frequency in 102 Family Scaffolds |
|---|---|---|---|
| COG2986 | Histidine ammonia-lyase | Amino acid transport and metabolism [E] | 11.76 |
| COG0646 | Methionine synthase I (cobalamin-dependent), methyltransferase domain | Amino acid transport and metabolism [E] | 10.78 |
| COG2040 | Homocysteine/selenocysteine methylase (S-methylmethionine-dependent) | Amino acid transport and metabolism [E] | 10.78 |
| COG0673 | Predicted dehydrogenase | General function prediction only [R] | 6.86 |
| COG2072 | Predicted flavoprotein CzcO associated with the cation diffusion facilitator CzcD | Inorganic ion transport and metabolism [P] | 2.94 |
| COG2315 | Predicted DNA-binding protein with ‘double-wing’ structural motif, MmcQ/YjbR family | Transcription [K] | 1.96 |
| COG0124 | Histidyl-tRNA synthetase | Translation, ribosomal structure and biogenesis [J] | 0.98 |
| COG0423 | Glycyl-tRNA synthetase, class II | Translation, ribosomal structure and biogenesis [J] | 0.98 |
| COG0441 | Threonyl-tRNA synthetase | Translation, ribosomal structure and biogenesis [J] | 0.98 |
| COG0442 | Prolyl-tRNA synthetase | Translation, ribosomal structure and biogenesis [J] | 0.98 |
| COG0598 | Mg2+ and Co2+ transporter CorA | Inorganic ion transport and metabolism [P] | 0.98 |
| COG0846 | NAD-dependent protein deacetylase, SIR2 family | Posttranslational modification, protein turnover, chaperones [O] | 0.98 |
| COG2987 | Urocanate hydratase | Amino acid transport and metabolism [E] | 0.98 |
| ⦗Top⦘ |
| Name | Rank | Taxonomy | Distribution |
| Unclassified | root | N/A | 96.08 % |
| All Organisms | root | All Organisms | 3.92 % |
| Visualization |
|---|
| Powered by ApexCharts |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| 3300005713|Ga0066905_101620868 | All Organisms → cellular organisms → Bacteria | 592 | Open in IMG/M |
| 3300005764|Ga0066903_109021362 | All Organisms → cellular organisms → Bacteria | 505 | Open in IMG/M |
| 3300031770|Ga0318521_10550795 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia | 695 | Open in IMG/M |
| 3300031771|Ga0318546_10384851 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria | 978 | Open in IMG/M |
| ⦗Top⦘ |
| Habitat | Taxonomy | Distribution |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil | 28.43% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil | 7.84% |
| Soil | Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil | 6.86% |
| Tropical Forest Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil | 5.88% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil | 5.88% |
| Vadose Zone Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil | 4.90% |
| Grasslands Soil | Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil | 3.92% |
| Tropical Forest Soil | Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil | 3.92% |
| Corn, Switchgrass And Miscanthus Rhizosphere | Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere | 3.92% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil | 2.94% |
| Agricultural Soil | Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil | 2.94% |
| Grasslands Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil | 1.96% |
| Arabidopsis Rhizosphere | Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere | 1.96% |
| Populus Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere | 1.96% |
| Freshwater Sediment | Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment | 0.98% |
| Watersheds | Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds | 0.98% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil | 0.98% |
| Terrestrial Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil | 0.98% |
| Grass Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grass Soil | 0.98% |
| Agricultural Soil | Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil | 0.98% |
| Hardwood Forest Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil | 0.98% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil | 0.98% |
| Forest Soil | Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil | 0.98% |
| Corn Rhizosphere | Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere | 0.98% |
| Corn Rhizosphere | Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere | 0.98% |
| Switchgrass Rhizosphere | Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere | 0.98% |
| Corn Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere | 0.98% |
| Corn Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere | 0.98% |
| Miscanthus Rhizosphere | Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere | 0.98% |
| Corn Rhizosphere | Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere | 0.98% |
| Tropical Rainforest Soil | Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest → Tropical Rainforest Soil | 0.98% |
| Visualization |
|---|
| Powered by ApexCharts |
| Taxon OID | Sample Name | Habitat Type | IMG/M Link |
|---|---|---|---|
| 2170459023 | Grass soil microbial communities from Rothamsted Park, UK - FA3 (control condition) | Environmental | Open in IMG/M |
| 3300000364 | Soil microbial communities from Great Prairies - Iowa, Native Prairie soil | Environmental | Open in IMG/M |
| 3300002245 | Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027) | Environmental | Open in IMG/M |
| 3300002917 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_100cm | Environmental | Open in IMG/M |
| 3300005161 | Soil and rhizosphere microbial communities from Laval, Canada - mgLPA | Environmental | Open in IMG/M |
| 3300005163 | Soil and rhizosphere microbial communities from Laval, Canada - mgHMB | Environmental | Open in IMG/M |
| 3300005172 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132 | Environmental | Open in IMG/M |
| 3300005178 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137 | Environmental | Open in IMG/M |
| 3300005184 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_120 | Environmental | Open in IMG/M |
| 3300005332 | Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly) | Environmental | Open in IMG/M |
| 3300005337 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG | Environmental | Open in IMG/M |
| 3300005363 | Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome F II A100 (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
| 3300005435 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG | Environmental | Open in IMG/M |
| 3300005454 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_136 | Environmental | Open in IMG/M |
| 3300005713 | Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2) | Environmental | Open in IMG/M |
| 3300005764 | Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2) | Environmental | Open in IMG/M |
| 3300006059 | Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2012 | Environmental | Open in IMG/M |
| 3300006173 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG | Environmental | Open in IMG/M |
| 3300006576 | Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLPA (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
| 3300006903 | Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD5 | Host-Associated | Open in IMG/M |
| 3300006904 | Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3 | Host-Associated | Open in IMG/M |
| 3300006954 | Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control | Environmental | Open in IMG/M |
| 3300009012 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159 | Environmental | Open in IMG/M |
| 3300009137 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158 | Environmental | Open in IMG/M |
| 3300009551 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG | Host-Associated | Open in IMG/M |
| 3300010046 | Tropical forest soil microbial communities from Panama - MetaG Plot_36 | Environmental | Open in IMG/M |
| 3300010359 | Tropical forest soil microbial communities from Panama - MetaG Plot_15 | Environmental | Open in IMG/M |
| 3300010361 | Tropical forest soil microbial communities from Panama - MetaG Plot_23 | Environmental | Open in IMG/M |
| 3300010376 | Tropical forest soil microbial communities from Panama - MetaG Plot_28 | Environmental | Open in IMG/M |
| 3300010400 | Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2 | Environmental | Open in IMG/M |
| 3300012096 | Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG | Environmental | Open in IMG/M |
| 3300012201 | Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaG | Environmental | Open in IMG/M |
| 3300012208 | Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG | Environmental | Open in IMG/M |
| 3300012353 | Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_80_16 metaG | Environmental | Open in IMG/M |
| 3300012404 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_20cm_2_8_1 metaT (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
| 3300012491 | Arabidopsis rhizosphere microbial communities from North Carolina - M.Oy.8.old.040610 | Host-Associated | Open in IMG/M |
| 3300012513 | Arabidopsis rhizosphere microbial communities from North Carolina - M.Oy.2.old.250510 | Host-Associated | Open in IMG/M |
| 3300012948 | Tropical forest soil microbial communities from Panama - MetaG Plot_14 | Environmental | Open in IMG/M |
| 3300013105 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG | Host-Associated | Open in IMG/M |
| 3300014157 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_20cm_2_24_1 metaG | Environmental | Open in IMG/M |
| 3300016294 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 | Environmental | Open in IMG/M |
| 3300016404 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 | Environmental | Open in IMG/M |
| 3300016422 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 | Environmental | Open in IMG/M |
| 3300016445 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 | Environmental | Open in IMG/M |
| 3300017942 | Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_3 | Environmental | Open in IMG/M |
| 3300019887 | Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1c2 | Environmental | Open in IMG/M |
| 3300020140 | Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16fungal (Illumina Assembly) | Environmental | Open in IMG/M |
| 3300020581 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M | Environmental | Open in IMG/M |
| 3300020582 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O | Environmental | Open in IMG/M |
| 3300021432 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M | Environmental | Open in IMG/M |
| 3300021560 | Tropical forest soil microbial communities from Panama - MetaG Plot_4 | Environmental | Open in IMG/M |
| 3300025898 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes) | Environmental | Open in IMG/M |
| 3300025910 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) | Environmental | Open in IMG/M |
| 3300025928 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) | Environmental | Open in IMG/M |
| 3300025929 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) | Environmental | Open in IMG/M |
| 3300025932 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) | Host-Associated | Open in IMG/M |
| 3300025937 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes) | Host-Associated | Open in IMG/M |
| 3300026041 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) | Host-Associated | Open in IMG/M |
| 3300026118 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) | Host-Associated | Open in IMG/M |
| 3300031544 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f26 | Environmental | Open in IMG/M |
| 3300031545 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26 | Environmental | Open in IMG/M |
| 3300031573 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111 | Environmental | Open in IMG/M |
| 3300031640 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f23 | Environmental | Open in IMG/M |
| 3300031719 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2) | Environmental | Open in IMG/M |
| 3300031723 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f23 | Environmental | Open in IMG/M |
| 3300031748 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f22 | Environmental | Open in IMG/M |
| 3300031765 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f22 | Environmental | Open in IMG/M |
| 3300031770 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f17 | Environmental | Open in IMG/M |
| 3300031771 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19 | Environmental | Open in IMG/M |
| 3300031778 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f24 | Environmental | Open in IMG/M |
| 3300031794 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f23 | Environmental | Open in IMG/M |
| 3300031835 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f21 | Environmental | Open in IMG/M |
| 3300031845 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f18 | Environmental | Open in IMG/M |
| 3300031846 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f19 | Environmental | Open in IMG/M |
| 3300031860 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f25 | Environmental | Open in IMG/M |
| 3300031910 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2) | Environmental | Open in IMG/M |
| 3300031954 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2) | Environmental | Open in IMG/M |
| 3300032025 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f20 | Environmental | Open in IMG/M |
| 3300032039 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f21 | Environmental | Open in IMG/M |
| 3300032060 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f18 | Environmental | Open in IMG/M |
| 3300032067 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f22 | Environmental | Open in IMG/M |
| 3300032074 | Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.P.R1 | Environmental | Open in IMG/M |
| 3300032180 | Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515 | Environmental | Open in IMG/M |
| 3300032261 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2) | Environmental | Open in IMG/M |
| 3300032895 | Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.3 | Environmental | Open in IMG/M |
| 3300032896 | Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.4 | Environmental | Open in IMG/M |
| 3300032898 | Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.1 | Environmental | Open in IMG/M |
| 3300033134 | Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.2 | Environmental | Open in IMG/M |
| Geographical Distribution | |
|---|---|
| Zoom: | Powered by OpenStreetMap |
| ⦗Top⦘ |
| Protein ID | Sample Taxon ID | Habitat | Sequence |
| FA3_01789960 | 2170459023 | Grass Soil | TDLRRPSRLGEGTGRALRLVRELAGFTARGQAPPAELEPLVDAVRAGRFARAALPGR |
| INPhiseqgaiiFebDRAFT_1017902553 | 3300000364 | Soil | LVAAQAIDLRRPSRLGEGTGRALGLVRELADFTARGQAPPAELEPLVDAVRAGRFARAALPGQ* |
| JGIcombinedJ26739_1006210401 | 3300002245 | Forest Soil | LRRFPRLGEGTGRALRLLRELAAFTGHGQAPPSDLEPLVDAVRAGRFTDAAGLTP* |
| JGI25616J43925_103598271 | 3300002917 | Grasslands Soil | AIDLRQPSDLGEGTGRALRLVREFAHFTARGEAPPAELEPLVDAVRAGRFARAAGADQYD |
| Ga0066807_10136061 | 3300005161 | Soil | ALELFVAAQAIDLRRLPRLGEGTGRALRLLRELATFTGHGQAPPADLELLVDAVRAGRFTDAAGLTPT* |
| Ga0066823_100187521 | 3300005163 | Soil | LLVSAQATDLRRPSRLGEGTGRALPLVRELAGFTARGQAPPAELEPLVDAVRAGRFARAALPGR* |
| Ga0066683_104692982 | 3300005172 | Soil | VALELFVAAQAIDLRRLPRLGEGTGRALRLLRELATFTGHGQAPPADLELLVDAVRAGRFTDAAVLTPT* |
| Ga0066688_106100542 | 3300005178 | Soil | ALELFVAAQAIDLRRFPRLGEGTGRALRLLRELATFTGHGQAPPANLELLVDAVRAGRFTDAAGLTPT* |
| Ga0066671_108235221 | 3300005184 | Soil | VALELFVAAQAIDLRRLPRLGEGTGRALRLLRELATFTGHGQAPPANLELLVDAVRAGRFTDAAGLTPT* |
| Ga0066388_1063854961 | 3300005332 | Tropical Forest Soil | MADLAARVVSRELFVAAQAIDLRRPSRLGEGTGQALRLVRELADFTARGQIPPADLEPLVDAVRAGRFARAASPG* |
| Ga0070682_1001459081 | 3300005337 | Corn Rhizosphere | QAIDLRRFPRLGEGTGRALRLLRELATFTGHGQAPPADLEPLVDAVRAGRFADAAG* |
| Ga0008090_157493872 | 3300005363 | Tropical Rainforest Soil | VAAQAVDLRRPSRLGEGTGRALLLVRELAGFTARGQAPPAELEPLVDAVRAGRFAGAALPSQ* |
| Ga0070714_1024345792 | 3300005435 | Agricultural Soil | VSLEFLVAAQAIDLRRPSRLGEGTGRALGLVRELADFTARGQAPPADLEPLVDAVRAGRFARAALPGE* |
| Ga0066687_102276382 | 3300005454 | Soil | QAIDLRRLPRLGEGTGRALRLLRELATFTGHGQAPPANLELLVDAVRAGRFTDAAGLTPT |
| Ga0066687_106431492 | 3300005454 | Soil | VALELFVAAQAIDLRRLPRLGEGTGRALRLLREVAAFTGHGQAPPSDLEPLVDAVRAGRFTDAAGLTP* |
| Ga0066905_1016208682 | 3300005713 | Tropical Forest Soil | RRLGEGTERAHDLVRELADFTGRGQVPPADLEPLVDAVRTGRFARVCLPEGR* |
| Ga0066903_1003811311 | 3300005764 | Tropical Forest Soil | LFVAAQAIDLRQPSRLGEGTGRALQLVRELAGFTGRGQAPPADLEPLVDAVRAGRFVQVAGGG* |
| Ga0066903_1090213622 | 3300005764 | Tropical Forest Soil | ASRLGQGTGRALRLVRELADFTAGGQTPPAELEPLVDAVRAGRFARTALPA* |
| Ga0075017_1002853764 | 3300006059 | Watersheds | VAAQAIDLRQPPSLGEGTGRALRLVRELAGFTAGGQAPPAELEPLVDAVRAGRFARAALPGE* |
| Ga0070716_1006142542 | 3300006173 | Corn, Switchgrass And Miscanthus Rhizosphere | DLRRFPRLGEGTGRALRLLRELAAFTGHGQAPPSDLEPLVDAVRAGRFTDAAGLTP* |
| Ga0074047_100025041 | 3300006576 | Soil | IDLRRPSRLGEGTGRALRLVRELVDFTARGETPPAELEPLVDAVRAGRFARAAVPGR* |
| Ga0075426_108283612 | 3300006903 | Populus Rhizosphere | VAAQAIDLRRLPRLGGGTGRALCLLRELAAFTGHGQAPPADLEPLVDAVRAGRFTDAAS* |
| Ga0075424_1015185641 | 3300006904 | Populus Rhizosphere | AQAIDLRRFPRLGEGTGRALRLLREFAAFTGHGQAPPADLEPLVDAVRAGRFTDAAGG* |
| Ga0079219_104104162 | 3300006954 | Agricultural Soil | ELFVAAQAIDLRRFPRLGEGTGRALRLLRELAAFTGHGQAPPADLEPLVDAVRAGRFTDAAGLTPPQQL* |
| Ga0066710_1019329052 | 3300009012 | Grasslands Soil | AIDLRRLPRLGEGTGRALRLLREVAAFTGHGQAPPSDLEPLVDAVRAGRFTDAAGLTP |
| Ga0066709_1024136412 | 3300009137 | Grasslands Soil | ALELFVAAQAIDLRRLPRLGEGTGRALRLLRELATFTGHGQAPPANLELLVDAVRAGRFTDAAGLTPT* |
| Ga0066709_1026949822 | 3300009137 | Grasslands Soil | DLRRLPRLGQGTGRALRLLRELAAFTGHGQAPPSDLEPLVDAVRAGRFTDAAGPTP* |
| Ga0105238_125634871 | 3300009551 | Corn Rhizosphere | LRRFPRLGEGTGRALRLLRELAAFTGHGQAPPSDLEPLVAAVRAGRFTDAAGLTP* |
| Ga0126384_121685812 | 3300010046 | Tropical Forest Soil | VAAQAIDLRQPSRLGEGTGPALRLVRELAGFTARGQAPPADLEPLVDAVRAGRFARAALPGGDPG* |
| Ga0126376_104744462 | 3300010359 | Tropical Forest Soil | VVSLEFLVAAQAIDLRRPSRLGEGTGRAFGLIRELADFTARGQAPPAELEPLVDAVRAGRFARAALPRE* |
| Ga0126378_100849056 | 3300010361 | Tropical Forest Soil | PASLGEGTGRALGLVRELTDFTARGQAPPAELEPLVDAVRAGRFARTALPGE* |
| Ga0126381_1000310481 | 3300010376 | Tropical Forest Soil | IDLRRPTRLGEGTGRALRLVREVAGFTARGQAPPADLEPLVEAVRAGRFARAAGLAS* |
| Ga0134122_103057591 | 3300010400 | Terrestrial Soil | IDLRQPARLGEGTGRALRLVRELAGFTARGQAPPADLEPLVDAVRAGSFARAALPGQ* |
| Ga0137389_112590452 | 3300012096 | Vadose Zone Soil | DLRRPSRLGQGTGRALRLVRELADFTARGQAPPAELEPLVDVVRAGRFAQVALPGR* |
| Ga0137365_108807951 | 3300012201 | Vadose Zone Soil | DLAARVVALELFVAGQAIDLRRFPRVGQGTGRALRLLRELAAFTGQGQAPPSDLELLVDAVRAGRFTDAAGLTP* |
| Ga0137376_101130453 | 3300012208 | Vadose Zone Soil | LVAAQAIDLRRPSRLGEGTGRALRLVRELAGFTAHGQAPPAELEPLVDAVRAGRFARAALPGR* |
| Ga0137367_102936912 | 3300012353 | Vadose Zone Soil | DMADLAARVVALELFVAAQAIDLRRFPRLGEGTGQALRLLRELAALTGHGQAPPADLELLVDAVRAGRFTDAAGLTP* |
| Ga0134024_10565071 | 3300012404 | Grasslands Soil | FVAAQAIDLRRLPRLGEGTGRALRLLRELAAFTGHGQAPPADLEPLVDAVRAGRFTDAAGLTPT* |
| Ga0157329_10266812 | 3300012491 | Arabidopsis Rhizosphere | AAQAIDLRRFPRLGEGTGRALRLLRELATFTGHGQAPPADLEPLVDAVRAGRFTDAAG* |
| Ga0157326_10865051 | 3300012513 | Arabidopsis Rhizosphere | AIDLRRFPRLGEGTGRTLRLLRELATFTGHGQAPPADLEPLVDAVRAGRFTDAAG* |
| Ga0126375_118809632 | 3300012948 | Tropical Forest Soil | QAVDLRRPSRLGEGTGRALRLVRELADFTARGQAPPADLEPLVDAVRAGRFARAALPGQ* |
| Ga0157369_119726932 | 3300013105 | Corn Rhizosphere | ELFVAAQAIDLRRFPRLGEGTGRALRLLRELATFTGHGQAPPADLEPLVDAVRAGRFTDAAG* |
| Ga0134078_102486431 | 3300014157 | Grasslands Soil | RRLPRLGEGTGRALRLLRELAAFTGHGQAPPADLELLVDAVRAGRFSDAAELTPT* |
| Ga0182041_109551161 | 3300016294 | Soil | LRQPPSLGEGTGRALHLVRELVGFTARGQAPPAELEPLVDAVRAGRFARTAVPGE |
| Ga0182037_107993332 | 3300016404 | Soil | DLRQASRLGQGTGRALRLVRELADFTAGGQAPPAELEPLVDAVRSGRFARTALPA |
| Ga0182039_101869221 | 3300016422 | Soil | DLRQPPSLGEGTGRALHLVRELVGFTARGQAPPAELEPLVDAVRAGRFARTAVPGE |
| Ga0182038_109694541 | 3300016445 | Soil | IDLRGPSRLGEGTARALVLVRELAGFTARGQAPPADLEPLVDAVRAGRFARAASPG |
| Ga0187808_102912921 | 3300017942 | Freshwater Sediment | PARLGEGTGRAHGLVREVVPFTARGQAPPAELEPLADAVRAGRFARAAAREPDDNLV |
| Ga0193729_11452022 | 3300019887 | Soil | ELFVAAQAIDLRRFPRLGEGTGRALRLLRELAAFTGHGQAPPSDLEPLVDAVRAGRFTDAAGLTP |
| Ga0179590_10507061 | 3300020140 | Vadose Zone Soil | LRRFPRLGEGTGRALRLLRELAAFTGHGQAPPADLELLVDAVRAGRFTDAAGLTP |
| Ga0210399_113178521 | 3300020581 | Soil | LGLFGAAQAIDLRRLPRLGEGTGRALRLLREVAAFTGHGQAPPSDLEPLVEAVRAGRFTDAAGLIP |
| Ga0210395_109128732 | 3300020582 | Soil | ELFVAAQAIDLRRFPRLGEGTGRAHRLLRELAAFTGHGQAPPSDLEPLVDAVRAGRFTDAAGLTP |
| Ga0210384_100891664 | 3300021432 | Soil | LELFVAAQAIDLRRFPRLGEGTGRAHRLLRELAAFTGHGQAPPSDLEPLVDAVRAGRFTDAAGLTP |
| Ga0126371_136534251 | 3300021560 | Tropical Forest Soil | RVVSLELFVAAQAIDLRRASRLGEGTGQALRLVRELADFTARGQVPPADLEPLVDAVRAGRFARAASPG |
| Ga0207692_100614543 | 3300025898 | Corn, Switchgrass And Miscanthus Rhizosphere | RRSARLGEGTERARRLVRELAGFTAQGQAPPAELEPLVDAVREGRFARTALPG |
| Ga0207684_1001039510 | 3300025910 | Corn, Switchgrass And Miscanthus Rhizosphere | RRLPRLGEGTGRALGLLRELAAFTGHGQAPPSDLEPLVDAVRAGRFTDAAGLTP |
| Ga0207700_105644892 | 3300025928 | Corn, Switchgrass And Miscanthus Rhizosphere | RRLPRLGEGTGRALRLLREVAAFTGHGQAPPSDLEPLVDAVRAGRFTDAAGLIP |
| Ga0207664_117815272 | 3300025929 | Agricultural Soil | AIDLRRLPRLGEGTGRALRLLREVAAFTGHGQAPPSDLEPLVDAVRAGRFTDAAGLIP |
| Ga0207664_118254111 | 3300025929 | Agricultural Soil | DLGARVVALELLVSAQATDLRRPSRLGEGTGRALRLVRELAGFTARGQAPPAELEPLVDAVRAGRFARTALPRQ |
| Ga0207690_108120491 | 3300025932 | Corn Rhizosphere | ELFVAAQAIDLRRFPRLGEGTGRALRLLRELATFTGHGQAPPADLEPLVDAVRAGRFTDAAG |
| Ga0207669_105664781 | 3300025937 | Miscanthus Rhizosphere | ALELFVAAQAIDLRRFPRLGEGTGRALRLLRELATFTGHGQAPPADLEPLVDAVRAGRFADAAG |
| Ga0207639_100845241 | 3300026041 | Corn Rhizosphere | ALELFVAAQAIDLRRFPRLGEGTGRALRLLRELATFTGHGQAPPADLEPLVDAVRAGRFTDAAG |
| Ga0207675_1001761801 | 3300026118 | Switchgrass Rhizosphere | QAIDLRRFPRLGEGTGRALRLLRELASFTGHGQAPPADLELLVDAVRAGRFTDAAGLTP |
| Ga0318534_101380612 | 3300031544 | Soil | VAAQAIDLRGSSRLGEGTGRALGLVRELVGFTARGQAPPADIEPLVDAVRMGRFARTALPGQ |
| Ga0318541_100847333 | 3300031545 | Soil | DLRRPSSLGVGTRRALGLVRELTDFTARGQAPPAELEPLVDAVQAGRFARAALPGE |
| Ga0310915_102804331 | 3300031573 | Soil | SLELFVAAQAIDVRRPAHLGEGTGRALRLVRELTGFTARGQAPPADLEPLVDAVRAGRFAQAAAQ |
| Ga0318555_108197022 | 3300031640 | Soil | LLVAAQAVDLRRPSSLGVGTRRALGLVRELTDFTARGQAPPAELEPLVDAVQAGRFARAALPGE |
| Ga0306917_110475041 | 3300031719 | Soil | DLRQPSRLGEGTGRALHLVREFAGFTARGQAPPAELEPLVDAVRAGRFARVALPGE |
| Ga0318493_107345242 | 3300031723 | Soil | VAAQATDLRRPSRLGEGTGRALDLVRELAGFTARGQAPPADLEPLVDAVRAGRFARAALPGR |
| Ga0318493_108720432 | 3300031723 | Soil | LAQAVDLRRPARLGEGTGRALGLVRELAGFTARGQAPPPDIEPLVDAVRAGRFARAALSG |
| Ga0318492_102525901 | 3300031748 | Soil | ELLVAAQAVDLRRPSSLGVGTRRALGLVRELTDFTARGQAPPAELEPLVDAVQAGRFARAALPGE |
| Ga0318492_104901151 | 3300031748 | Soil | LRQPSRLGEGTGRALHLVREFAGFTARGQAPPAELEPLVDAVRSGRFARVVLPGE |
| Ga0318554_100458311 | 3300031765 | Soil | PPSLGEGTGRALHLVRELVGFTARGQAPPAELEPLVDAVRAGRFARTAVPGE |
| Ga0318554_102961011 | 3300031765 | Soil | PASLGEGTGRAFHLVRDLAGFTARGQAPPAELEPLVDAVRAGRFARTALPGQ |
| Ga0318521_100398573 | 3300031770 | Soil | DLRRPARLGEGTGRALGLVRELAGFTARGQAPPPDIEPLVDAVRAGRFARAALSGQ |
| Ga0318521_105507951 | 3300031770 | Soil | SSLGEGTGRAHHLVRELAGFTARGQAPPAELEPLVDAVRAGRFARTALPGA |
| Ga0318546_103848512 | 3300031771 | Soil | VDGLGKGTGRAFHLVRELAGFTARGQAPPAELEPLVDAVRAGRFARVALPGE |
| Ga0318498_100708662 | 3300031778 | Soil | AIDLRQPSRLGEGTGRALHLVREFAGFTARGQAPPAELEPLVDAVRSGRFARVVLPGE |
| Ga0318503_100094433 | 3300031794 | Soil | AQAIDLRQPSRLGQGTGRAFRLVREFASFTGLGEHLPADLEPLVTAVRMGRFAQAAGSGQ |
| Ga0318517_101878841 | 3300031835 | Soil | VQAIDLRQPSSLGEGTGRAHHLVRELAGFTARGQAPPAELEPLVDAVRAGRFARTALPGA |
| Ga0318511_101209972 | 3300031845 | Soil | MRSLGSLAQAIDLRMPRRLGEGTERAHRLVRELADFTGRGQVPPADLEPLVDAVRAGCFAQACLPE |
| Ga0318511_103850022 | 3300031845 | Soil | AAQAVDLRRPSSLGVGTRRALGLVRELTDFTARGQAPPAELEPLVDAVQAGRFARAALPG |
| Ga0318512_101285262 | 3300031846 | Soil | AQATDLRRPSRLGEGTGRALDLVRELAGFTARGQAPPADLEPLVDAVRAGRFARAALPGR |
| Ga0318495_101068522 | 3300031860 | Soil | DLRQPSSLGKGTGRAFHLVRELAGFTARGQAPPAELEPLVDAVRAGRFARVALPGE |
| Ga0306923_107736132 | 3300031910 | Soil | VQAVDLRRPARLGEGTGRALGLVRELAGFTARGQAPPPDIEPLVDAVRAGRFARAALSGQ |
| Ga0306926_112040821 | 3300031954 | Soil | SRLGEGTGRALGLVRELAGFTDRGQAPPPDIEPLVDAVRAGRFARTALPGQ |
| Ga0318507_101987432 | 3300032025 | Soil | LVAAQAVDLRRPSSLGEGTGRALGLVRELADFTARGQAPPAELEPLVDAVRAGRFARAALPGE |
| Ga0318507_102088672 | 3300032025 | Soil | AAQAIDLRQPSSLGEGTGRAHHLVRELAGFTARGQAPPAELEPLVDAVRAGRFARTALPG |
| Ga0318559_106073012 | 3300032039 | Soil | AAQAVDLRRPSRLGEGTGRALGLVRELAGFTDRGQAPPPDIEPLVDAVRAGRFARTALPG |
| Ga0318505_100147111 | 3300032060 | Soil | ALELLVAAQAIDLRQPSRLGQGTGRAFRLVREFASFTGLGEHLPADLEPLVTAVRMGRFAQAAGSGQ |
| Ga0318524_100928412 | 3300032067 | Soil | RQPSRLGEGTGRALHLVREFAGFTARGQAPPAELEPLVDAVRSGRFARVVLPGE |
| Ga0318524_101794951 | 3300032067 | Soil | AVDLRRPARLGEGTGRALGLVRELAGFTARGQAPPPDIEPLVDAVRAGRFARAALSGQ |
| Ga0308173_114611781 | 3300032074 | Soil | ELFVAAQAIDLRRLPRLGEGTGRALRLLRELAAFTGHGQAPPADLEPLVDAVRAGRFTDAAGLTPT |
| Ga0307471_1029034081 | 3300032180 | Hardwood Forest Soil | ARDVALELFVAAQAIDLRRLPHLGEGTGRALRLLRELATFTGHGQAPPADLELLVDAVRAGRFTDAAGLTPA |
| Ga0306920_1002333401 | 3300032261 | Soil | RPSRLGEGTGRALGLVRELAGFTDRGQAPPPDIEPLVDAVRAGRFARTALPGQ |
| Ga0335074_102903243 | 3300032895 | Soil | FVAAQAVDLRQPVRLGEGTGRALRLVRELAGFTARGQAPPADLEPLVEAVRAGRFARTAFPGQ |
| Ga0335075_101424514 | 3300032896 | Soil | LELFVAAQAVDLRQPVRLGEGTGRALRLVRELAGFTARGQAPPADLEPLVEAVRAGRFARTAFPSQ |
| Ga0335075_101554453 | 3300032896 | Soil | LELFVAAQAVDLRQPVRLGEGTGRALRLVRELAGFTARGQAPPADLEPLVEAVRAGRFAASSGGCR |
| Ga0335072_100303871 | 3300032898 | Soil | FVAAQAVDLRQPVRLGEGTGRALRLVRELAGFTARGQAPPADLEPLVEAVRAGRFAASSGGCR |
| Ga0335072_104949691 | 3300032898 | Soil | RVVALELFVAGQAIDLRRLPRLGEGTGRALRLLRELAAFTGHGQAPPADLEPLVDAVRAGRFTDAAGADPGVAPRS |
| Ga0335073_100703331 | 3300033134 | Soil | PVRLGEGTGRALRLVRELAGFTARGQAPPADLEPLVEAVRAGRFARTAFPSQ |
| Ga0335073_108431511 | 3300033134 | Soil | FVAAQAIDLRRFPRLGEGTGRALRLLRELAAFTGHGQAPPADLEPLVDAVRAGRFTDAAGADPGVASRS |
| ⦗Top⦘ |
|
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |