Metagenome Family F101729

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F101729
Family Type	Metagenome
Number of Sequences	102
Average Sequence Length	70 residues
Representative Sequence	MKRKFIFPALMLCLGILNGCGAARPSKFYQLTLPNDKTSGADPAPFPVTLLLGPITTSHLYRDDHIVY
Number of Associated Samples	83
Number of Associated Scaffolds	102

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	94.12 %
% of genes near scaffold ends (potentially truncated)	99.02 %
% of genes from short scaffolds (< 2000 bps)	95.10 %
Associated GOLD sequencing projects	79
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.25

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (97.059 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (36.274 % of family members)
Environment Ontology (ENVO)	Unclassified (41.176 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (50.980 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 14.58% β-sheet: 0.00% Coil/Unstructured: 85.42%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.25
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.25
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 102 Family Scaffolds
PF02470	MlaD	17.65
PF00005	ABC_tran	3.92
PF03886	ABC_trans_aux	1.96
PF01740	STAS	0.98
PF01041	DegT_DnrJ_EryC1	0.98
PF02405	MlaE	0.98

COG ID	Name	Functional Category	% Frequency in 102 Family Scaffolds
COG0399	dTDP-4-amino-4,6-dideoxygalactose transaminase	Cell wall/membrane/envelope biogenesis [M]	0.98
COG0436	Aspartate/methionine/tyrosine aminotransferase	Amino acid transport and metabolism [E]	0.98
COG0520	Selenocysteine lyase/Cysteine desulfurase	Amino acid transport and metabolism [E]	0.98
COG0626	Cystathionine beta-lyase/cystathionine gamma-synthase	Amino acid transport and metabolism [E]	0.98
COG0767	Permease subunit MlaE of the ABC-type intermembrane phospholipid transporter Mla	Cell wall/membrane/envelope biogenesis [M]	0.98
COG1104	Cysteine desulfurase/Cysteine sulfinate desulfinase IscS or related enzyme, NifS family	Amino acid transport and metabolism [E]	0.98
COG2873	O-acetylhomoserine/O-acetylserine sulfhydrylase, pyridoxal phosphate-dependent	Amino acid transport and metabolism [E]	0.98

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	97.06 %
Unclassified	root	N/A	2.94 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	97.06 %
Unclassified	root	N/A	2.94 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	97.06 %
Unclassified	root	N/A	2.94 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	94.12 %
Unclassified	root	N/A	2.94 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.98 %

Name	Rank	Taxonomy	Distribution
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	18.63 %
Unclassified	root	N/A	2.94 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	1.96 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.98 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	18.63 %
Unclassified	root	N/A	2.94 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	1.96 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.98 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	18.63 %
Unclassified	root	N/A	2.94 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1.96 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.98 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	18.63 %
Unclassified	root	N/A	2.94 %
Granulicella	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella	1.96 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.98 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	18.63 %
Unclassified	root	N/A	2.94 %
unclassified Granulicella	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → unclassified Granulicella	1.96 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.98 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	18.63 %
Unclassified	root	N/A	2.94 %
Granulicella sp. GAS466	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → unclassified Granulicella → Granulicella sp. GAS466	1.96 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.98 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300002245\|JGIcombinedJ26739_101084708	All Organisms → cellular organisms → Bacteria → Acidobacteria	687	Open in IMG/M
3300002907\|JGI25613J43889_10017324	All Organisms → cellular organisms → Bacteria → Acidobacteria	2016	Open in IMG/M
3300002914\|JGI25617J43924_10175907	All Organisms → cellular organisms → Bacteria → Acidobacteria	716	Open in IMG/M
3300005093\|Ga0062594_103062066	All Organisms → cellular organisms → Bacteria → Acidobacteria	522	Open in IMG/M
3300005167\|Ga0066672_10640977	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	687	Open in IMG/M
3300005177\|Ga0066690_10261936	All Organisms → cellular organisms → Bacteria → Acidobacteria	1162	Open in IMG/M
3300005177\|Ga0066690_10790253	All Organisms → cellular organisms → Bacteria → Acidobacteria	618	Open in IMG/M
3300005178\|Ga0066688_11012065	All Organisms → cellular organisms → Bacteria → Acidobacteria	506	Open in IMG/M
3300005334\|Ga0068869_101937371	All Organisms → cellular organisms → Bacteria → Acidobacteria	528	Open in IMG/M
3300005445\|Ga0070708_101169459	All Organisms → cellular organisms → Bacteria → Acidobacteria	720	Open in IMG/M
3300005471\|Ga0070698_101879169	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	552	Open in IMG/M
3300005526\|Ga0073909_10514974	All Organisms → cellular organisms → Bacteria → Acidobacteria	580	Open in IMG/M
3300005554\|Ga0066661_10036675	All Organisms → cellular organisms → Bacteria	2741	Open in IMG/M
3300005618\|Ga0068864_102473634	All Organisms → cellular organisms → Bacteria → Acidobacteria	525	Open in IMG/M
3300006028\|Ga0070717_10357540	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1306	Open in IMG/M
3300006028\|Ga0070717_11354424	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	647	Open in IMG/M
3300006173\|Ga0070716_100924728	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	685	Open in IMG/M
3300006175\|Ga0070712_101186777	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	664	Open in IMG/M
3300006237\|Ga0097621_101565969	All Organisms → cellular organisms → Bacteria → Acidobacteria	626	Open in IMG/M
3300007076\|Ga0075435_101027011	All Organisms → cellular organisms → Bacteria → Acidobacteria	720	Open in IMG/M
3300007255\|Ga0099791_10410317	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	653	Open in IMG/M
3300007265\|Ga0099794_10356495	Not Available	761	Open in IMG/M
3300007265\|Ga0099794_10440531	All Organisms → cellular organisms → Bacteria → Acidobacteria	683	Open in IMG/M
3300009089\|Ga0099828_10883045	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	799	Open in IMG/M
3300009143\|Ga0099792_10572814	All Organisms → cellular organisms → Bacteria → Acidobacteria	716	Open in IMG/M
3300009148\|Ga0105243_12037664	All Organisms → cellular organisms → Bacteria → Acidobacteria	609	Open in IMG/M
3300009545\|Ga0105237_11279283	All Organisms → cellular organisms → Bacteria → Acidobacteria	740	Open in IMG/M
3300010048\|Ga0126373_12258605	All Organisms → cellular organisms → Bacteria → Acidobacteria	605	Open in IMG/M
3300010359\|Ga0126376_11407832	All Organisms → cellular organisms → Bacteria → Acidobacteria	722	Open in IMG/M
3300010360\|Ga0126372_12488204	All Organisms → cellular organisms → Bacteria → Acidobacteria	569	Open in IMG/M
3300010366\|Ga0126379_12967319	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	568	Open in IMG/M
3300010376\|Ga0126381_101123862	All Organisms → cellular organisms → Bacteria → Acidobacteria	1135	Open in IMG/M
3300011270\|Ga0137391_10613661	All Organisms → cellular organisms → Bacteria → Acidobacteria	911	Open in IMG/M
3300011271\|Ga0137393_10165196	All Organisms → cellular organisms → Bacteria → Acidobacteria	1855	Open in IMG/M
3300011271\|Ga0137393_10832149	All Organisms → cellular organisms → Bacteria → Acidobacteria	788	Open in IMG/M
3300011271\|Ga0137393_11740556	All Organisms → cellular organisms → Bacteria → Acidobacteria	512	Open in IMG/M
3300012189\|Ga0137388_11080489	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	739	Open in IMG/M
3300012199\|Ga0137383_10138776	All Organisms → cellular organisms → Bacteria → Acidobacteria	1777	Open in IMG/M
3300012200\|Ga0137382_11065071	All Organisms → cellular organisms → Bacteria → Acidobacteria	579	Open in IMG/M
3300012202\|Ga0137363_10412999	All Organisms → cellular organisms → Bacteria → Acidobacteria	1125	Open in IMG/M
3300012202\|Ga0137363_11548365	All Organisms → cellular organisms → Bacteria → Acidobacteria	554	Open in IMG/M
3300012205\|Ga0137362_10133582	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2112	Open in IMG/M
3300012205\|Ga0137362_11277766	All Organisms → cellular organisms → Bacteria → Acidobacteria	619	Open in IMG/M
3300012210\|Ga0137378_11224409	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	667	Open in IMG/M
3300012351\|Ga0137386_10996049	All Organisms → cellular organisms → Bacteria → Acidobacteria	596	Open in IMG/M
3300012357\|Ga0137384_11608407	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	500	Open in IMG/M
3300012363\|Ga0137390_12012739	All Organisms → cellular organisms → Bacteria → Acidobacteria	503	Open in IMG/M
3300012683\|Ga0137398_10207879	All Organisms → cellular organisms → Bacteria → Acidobacteria	1293	Open in IMG/M
3300012917\|Ga0137395_11229610	All Organisms → cellular organisms → Bacteria → Acidobacteria	522	Open in IMG/M
3300012923\|Ga0137359_10450145	All Organisms → cellular organisms → Bacteria → Acidobacteria	1139	Open in IMG/M
3300012923\|Ga0137359_11016327	All Organisms → cellular organisms → Bacteria → Acidobacteria	711	Open in IMG/M
3300012923\|Ga0137359_11535390	All Organisms → cellular organisms → Bacteria → Acidobacteria	554	Open in IMG/M
3300012927\|Ga0137416_11396329	All Organisms → cellular organisms → Bacteria → Acidobacteria	634	Open in IMG/M
3300012927\|Ga0137416_11499635	Not Available	612	Open in IMG/M
3300012930\|Ga0137407_11677437	All Organisms → cellular organisms → Bacteria → Acidobacteria	605	Open in IMG/M
3300012960\|Ga0164301_10529133	All Organisms → cellular organisms → Bacteria → Acidobacteria	856	Open in IMG/M
3300012989\|Ga0164305_12048138	All Organisms → cellular organisms → Bacteria → Acidobacteria	523	Open in IMG/M
3300014325\|Ga0163163_11813776	All Organisms → cellular organisms → Bacteria → Acidobacteria	670	Open in IMG/M
3300015052\|Ga0137411_1101629	All Organisms → cellular organisms → Bacteria → Acidobacteria	810	Open in IMG/M
3300015052\|Ga0137411_1280286	All Organisms → cellular organisms → Bacteria → Acidobacteria	836	Open in IMG/M
3300015054\|Ga0137420_1385736	All Organisms → cellular organisms → Bacteria → Acidobacteria	1368	Open in IMG/M
3300017955\|Ga0187817_10172803	All Organisms → cellular organisms → Bacteria → Acidobacteria	1376	Open in IMG/M
3300020199\|Ga0179592_10249706	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	796	Open in IMG/M
3300020579\|Ga0210407_10653111	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	817	Open in IMG/M
3300020579\|Ga0210407_10884146	All Organisms → cellular organisms → Bacteria → Acidobacteria	686	Open in IMG/M
3300021171\|Ga0210405_10202331	All Organisms → cellular organisms → Bacteria → Acidobacteria	1574	Open in IMG/M
3300024330\|Ga0137417_1000997	All Organisms → cellular organisms → Bacteria → Acidobacteria	613	Open in IMG/M
3300025905\|Ga0207685_10394380	All Organisms → cellular organisms → Bacteria → Acidobacteria	708	Open in IMG/M
3300025986\|Ga0207658_11658521	All Organisms → cellular organisms → Bacteria → Acidobacteria	584	Open in IMG/M
3300026304\|Ga0209240_1041619	All Organisms → cellular organisms → Bacteria → Acidobacteria	1742	Open in IMG/M
3300026304\|Ga0209240_1163807	All Organisms → cellular organisms → Bacteria → Acidobacteria	682	Open in IMG/M
3300026304\|Ga0209240_1239998	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	552	Open in IMG/M
3300026304\|Ga0209240_1254759	All Organisms → cellular organisms → Bacteria → Acidobacteria	537	Open in IMG/M
3300026304\|Ga0209240_1270836	All Organisms → cellular organisms → Bacteria → Acidobacteria	522	Open in IMG/M
3300026309\|Ga0209055_1116107	All Organisms → cellular organisms → Bacteria → Acidobacteria	1030	Open in IMG/M
3300026320\|Ga0209131_1261693	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	676	Open in IMG/M
3300026356\|Ga0257150_1068209	All Organisms → cellular organisms → Bacteria → Acidobacteria	537	Open in IMG/M
3300026361\|Ga0257176_1032026	All Organisms → cellular organisms → Bacteria → Acidobacteria	795	Open in IMG/M
3300026376\|Ga0257167_1043653	All Organisms → cellular organisms → Bacteria → Acidobacteria	683	Open in IMG/M
3300026496\|Ga0257157_1070166	All Organisms → cellular organisms → Bacteria → Acidobacteria	600	Open in IMG/M
3300026515\|Ga0257158_1075576	All Organisms → cellular organisms → Bacteria → Acidobacteria	647	Open in IMG/M
3300026557\|Ga0179587_10013741	All Organisms → cellular organisms → Bacteria	4251	Open in IMG/M
3300026557\|Ga0179587_10137726	All Organisms → cellular organisms → Bacteria → Proteobacteria	1512	Open in IMG/M
3300026557\|Ga0179587_11000971	All Organisms → cellular organisms → Bacteria → Acidobacteria	550	Open in IMG/M
3300027587\|Ga0209220_1128846	All Organisms → cellular organisms → Bacteria → Acidobacteria	659	Open in IMG/M
3300027591\|Ga0209733_1101396	All Organisms → cellular organisms → Bacteria → Acidobacteria	725	Open in IMG/M
3300027610\|Ga0209528_1016453	All Organisms → cellular organisms → Bacteria → Acidobacteria	1617	Open in IMG/M
3300027645\|Ga0209117_1094178	All Organisms → cellular organisms → Bacteria → Acidobacteria	825	Open in IMG/M
3300027787\|Ga0209074_10478615	All Organisms → cellular organisms → Bacteria → Acidobacteria	537	Open in IMG/M
3300027846\|Ga0209180_10691642	Not Available	555	Open in IMG/M
3300027889\|Ga0209380_10876327	All Organisms → cellular organisms → Bacteria → Acidobacteria	505	Open in IMG/M
3300027911\|Ga0209698_10188183	All Organisms → cellular organisms → Bacteria → Acidobacteria	1675	Open in IMG/M
3300028047\|Ga0209526_10236452	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1254	Open in IMG/M
3300028673\|Ga0257175_1082530	All Organisms → cellular organisms → Bacteria → Acidobacteria	618	Open in IMG/M
3300031720\|Ga0307469_10975955	All Organisms → cellular organisms → Bacteria → Acidobacteria	789	Open in IMG/M
3300031754\|Ga0307475_10117651	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → unclassified Granulicella → Granulicella sp. GAS466	2089	Open in IMG/M
3300031754\|Ga0307475_11071707	All Organisms → cellular organisms → Bacteria → Acidobacteria	631	Open in IMG/M
3300031823\|Ga0307478_11308816	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	602	Open in IMG/M
3300031981\|Ga0318531_10275078	All Organisms → cellular organisms → Bacteria → Acidobacteria	761	Open in IMG/M
3300032180\|Ga0307471_100664810	All Organisms → cellular organisms → Bacteria → Acidobacteria	1205	Open in IMG/M
3300032205\|Ga0307472_100185495	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → unclassified Granulicella → Granulicella sp. GAS466	1564	Open in IMG/M
3300033004\|Ga0335084_10558340	All Organisms → cellular organisms → Bacteria → Acidobacteria	1174	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	92.16%
Host-Associated	Host-Associated	7.84%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	90.20%
Plants	Host-Associated → Plants	7.84%
Aquatic	Environmental → Aquatic	1.96%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	90.20%
Rhizosphere	Host-Associated → Plants → Rhizosphere	3.92%
Rhizoplane	Host-Associated → Plants → Rhizoplane	1.96%
Roots	Host-Associated → Plants → Roots	1.96%
Freshwater	Environmental → Aquatic → Freshwater	0.98%
Sediment	Environmental → Aquatic → Sediment	0.98%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	75.49%
Loam	Environmental → Terrestrial → Soil → Loam	13.73%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	2.94%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	1.96%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	1.96%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	0.98%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.98%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.98%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.98%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	44.12%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	15.69%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	13.73%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	6.86%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	6.86%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	2.94%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.96%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	1.96%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	1.96%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	0.98%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.98%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.98%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.98%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	36.27%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	9.80%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	7.84%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	6.86%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	5.88%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	5.88%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	5.88%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	4.90%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.96%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	0.98%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.98%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.98%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.98%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.98%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.98%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	0.98%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.98%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.98%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.98%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	0.98%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.98%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.98%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.98%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.98%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300002907	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_40cm	Environmental	Open in IMG/M
3300002914	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005167	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121	Environmental	Open in IMG/M
3300005177	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_139	Environmental	Open in IMG/M
3300005178	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137	Environmental	Open in IMG/M
3300005334	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2	Host-Associated	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005471	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG	Environmental	Open in IMG/M
3300005526	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1	Environmental	Open in IMG/M
3300005554	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110	Environmental	Open in IMG/M
3300005618	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2	Host-Associated	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006237	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2)	Host-Associated	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300007255	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1	Environmental	Open in IMG/M
3300007265	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1	Environmental	Open in IMG/M
3300009089	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG	Environmental	Open in IMG/M
3300009143	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2	Environmental	Open in IMG/M
3300009148	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG	Host-Associated	Open in IMG/M
3300009545	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG	Host-Associated	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300011270	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG	Environmental	Open in IMG/M
3300011271	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaG	Environmental	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012200	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012351	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_100_16 metaG	Environmental	Open in IMG/M
3300012357	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaG	Environmental	Open in IMG/M
3300012363	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG	Environmental	Open in IMG/M
3300012683	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaG	Environmental	Open in IMG/M
3300012917	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300015052	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300015054	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300017955	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_2	Environmental	Open in IMG/M
3300020199	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300024330	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300025905	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025986	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026304	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_80cm (SPAdes)	Environmental	Open in IMG/M
3300026309	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110 (SPAdes)	Environmental	Open in IMG/M
3300026320	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_40cm (SPAdes)	Environmental	Open in IMG/M
3300026356	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DL-13-A	Environmental	Open in IMG/M
3300026361	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NL-03-B	Environmental	Open in IMG/M
3300026376	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DL-02-B	Environmental	Open in IMG/M
3300026496	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NI-69-A	Environmental	Open in IMG/M
3300026515	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NL-03-A	Environmental	Open in IMG/M
3300026557	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal	Environmental	Open in IMG/M
3300027587	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM3_M3 (SPAdes)	Environmental	Open in IMG/M
3300027591	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M1 (SPAdes)	Environmental	Open in IMG/M
3300027610	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M3 (SPAdes)	Environmental	Open in IMG/M
3300027645	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2 (SPAdes)	Environmental	Open in IMG/M
3300027787	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter (SPAdes)	Environmental	Open in IMG/M
3300027846	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027889	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6 (SPAdes)	Environmental	Open in IMG/M
3300027911	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012 (SPAdes)	Environmental	Open in IMG/M
3300028047	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300028673	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NI-69-B	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031754	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515	Environmental	Open in IMG/M
3300031823	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05	Environmental	Open in IMG/M
3300031981	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f25	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300033004	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.4	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGIcombinedJ26739_1010847082	3300002245	Forest Soil	MKCRIIFPALMLCLGTLSGCGAARPSKFYQLTPPSNKTAGADPAPFPITLLLGPITTSHLYRDDHIVYTSN
JGI25613J43889_100173243	3300002907	Grasslands Soil	MKRKFIFPALMLCLGILNGCGAARPSKFYQLTLPNDKASGADPAPFPVTLLLGPITT
JGI25617J43924_101759072	3300002914	Grasslands Soil	MKHRTIFAALMLCLGILNGCGAARPSKFYQLTLPNDKTPGADPAPFPVTLLLGPITTSHLYRDDHIVYTSNGEAMGT
Ga0062594_1030620662	3300005093	Soil	MKYAVPVPALVVCFAIMNGCGAARPSKFYQLTVPNDRISAEDPATYPVALLLGPITTSHLYRDDR
Ga0066672_106409772	3300005167	Soil	MKRKFIFPALMLCLGILNGCGAARPSKFYQLTLPNDKASGADPAPFPVTLLLGPITTSHLYRDDHIVYTSSGEVMGTYEYRRWA
Ga0066690_102619361	3300005177	Soil	MKHRTIFAALMLCLGTLNGCGAARPSKFYQLTLPNDKASGADPAPFPVTLLLGPITTSHLYRDDHIVYTSN
Ga0066690_107902531	3300005177	Soil	MKRGLPISALVLCLAMMNGCGAARPSKFYQLTAASDRAAGEDPSPYAVTLLLGPITSSHLYRDDHIVYTSNGQ
Ga0066688_110120651	3300005178	Soil	MNRGLPISSLVLCLAIMNGCGAARPSKFYQLTVPNDRISAEDPATYPVALLLGPITTSHL
Ga0068869_1019373711	3300005334	Miscanthus Rhizosphere	MKYAVSVPALVLCFAIMNGCGAARPSKFYQLTVPNDRISAEDPATYPVALLLGPITTSHL
Ga0070708_1011694591	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MKYTVPVPALMLALGILSGCGAARPSKFYQLTAVSDRPSGADPSPYAVTLLLGPITSS
Ga0070698_1018791692	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	MKRKFLFPALMLCLGILNGCGAARPSKFYQLTLPNDKASGADPAPFPVTLLLGPITTSHLYRDDHIVYTSSGEVMGTYEYR
Ga0073909_105149741	3300005526	Surface Soil	MKYKIIFPALMLGLGMLNGCGAARPSKFYQLTAVSGRPSGADPSPYAVTLLLGPIISSHLYRDDHIVYTSNGQAMGT
Ga0066661_100366751	3300005554	Soil	MKHRTIFAALMLCLGTLNGCGAARPSKFYQLTLPNDKASGADPAPFPVTLLLGPITTSHL
Ga0068864_1024736342	3300005618	Switchgrass Rhizosphere	MKYKIIFPALMLALGILSGCGAARPSKFYQLTAVSDRPSGADTSPYAVTLLLGPITP
Ga0070717_103575402	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	MKRKFIFPALMLCLGILNGCGAARPSKFYQLTLPNDKASGADPAPFPVTLLLGPITTSHLYRDDHIVYTSSGEVMGTYEYRRW
Ga0070717_113544241	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	MKRKFIFPVLMLCLGINGCGAARPSKFYQLTLPNDNARGADPAPFPVTLLLGPITTSHLYRDDHNVYTSNGEAMGTYEYQRWAEP
Ga0070716_1009247281	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	MRCKIIFSALTLCLGILNGCGAARPSKFYQLAVPGDTARGAEPPAYAVTLLLGPIATSSLYRADRIVYTSNDEAMGTYEYERWAEP
Ga0070712_1011867771	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MKYKIIFPALMLALGILSGCGAARPSKFYQLTAVSDRPSGVDPSPYAVTLLLRPMTSSHLYRDDHIVYTSIGQAMGTYEYQRWAEP
Ga0097621_1015659691	3300006237	Miscanthus Rhizosphere	MKYKIIFPALMLALGILSGCGAARPSKFYQLTAVSDRPSGADTSPYAVTLLLGPITPSYLYRDDHIVYTSNGQA
Ga0075435_1010270111	3300007076	Populus Rhizosphere	MKYAVPVPALVLCLAIMDGCGATRPSKFYQLTGPNDRISAEERATYPIALLLGPITTSHLYRDDRIV
Ga0099791_104103172	3300007255	Vadose Zone Soil	MKYKIIFPALMLCLGMLSGCGAARPSKFYQLTLPSDKTSGPDPAPFPVTLLLGPITTSHLYRDDHIVYTSNSEAMGTYEYQ
Ga0099794_103564952	3300007265	Vadose Zone Soil	MNYKITFPAILLSLGILNGCGAARPSKFYELTAPDNSTVGADPAPYPVTLLLGRMATSNLYLDD
Ga0099794_104405312	3300007265	Vadose Zone Soil	MRCKIIFSALMLCLGTLDGCGAARPSKFYQLAVPGDTAPGAEPAAYPVTLLLGPIGTSSLYRDDRIVYTSYD
Ga0099828_108830451	3300009089	Vadose Zone Soil	MLCLGILNGCGAARPSKFYQLTLPNDKTPGADPPPFPVTLLLGPITTSHLYRDDHIVYTSNGEAMGTYEYQRWA
Ga0099792_105728142	3300009143	Vadose Zone Soil	MKHRTIFAALMLCLGILNGCGAARPSKFYQLTLPNDKTPGADPPPFPVTLLLGPITTSHLYRDDHIVYTSNGEAMGTYE
Ga0105243_120376641	3300009148	Miscanthus Rhizosphere	MTMKYKIIFPALMLALGILSGCGAARPSKFYQLTAVSDRPSGADTSPYAVTLLLGPITPSYLYRDDH
Ga0105237_112792832	3300009545	Corn Rhizosphere	MTMKYKIIFPALMLALGILSGCGAARPSKFYQLTAVSDRPSGADTSPYAVTLLLGPITPSYLYRDDHIVYTSN
Ga0126373_122586051	3300010048	Tropical Forest Soil	MKHKRILPTLILCLGMLNGCGAARPSKFYQLSVPAEGTLGTDPPSYSVTLLLGPIAASNLYRDDHI
Ga0126376_114078322	3300010359	Tropical Forest Soil	MKPKLIFPALMLLLGILNGCGAARPSKFYQLTLPSDKTPGADPPPFPVTLLLRPITTSHLYRDD
Ga0126372_124882042	3300010360	Tropical Forest Soil	MLSGCGATRPSKFYQLAVPGDTASGADPAPYPVTLLLGSITTSHLYRDDHIVYSSKGEAMGTYEFQRW
Ga0126379_129673191	3300010366	Tropical Forest Soil	MRCKIILSALMLCLEMLDGCGAARPSKFYQLTIPGDTAPGAQPAAYPVTLVLGAIGTSSLYRDDHIVYTSS
Ga0126381_1011238621	3300010376	Tropical Forest Soil	MKPKLIFPALMLLLGILNGCGAARPSKFYQLTLPSDKTPGADPPPFPVTLLLGPI
Ga0137391_106136611	3300011270	Vadose Zone Soil	MKYKIIFPALMLVLGILSGCGAARPSKFYQLTLPNDKASGTDPAPFPVTLLLGPITTSHLYRD
Ga0137393_101651963	3300011271	Vadose Zone Soil	MKYKIIFPALMLALGILSGCGAARPSKFYQLTAASDRPSRADRSPYAVTLLLGPITSSHLYRD
Ga0137393_108321492	3300011271	Vadose Zone Soil	MLCLGILNGCGAARPSKFYQLTLPNDKTPGADPAPIPVTLLLGPITTSHLYRDDHIVYTSNGEAMGTYE
Ga0137393_117405562	3300011271	Vadose Zone Soil	MKRKFIFPALMLCLGTLSGCGAARPSKFYQLTLPNDKTPGADPAPFPVTLLLGPITTSHL
Ga0137388_110804892	3300012189	Vadose Zone Soil	LKLKIIFPALILCLGILSGCGAARPSKFYQLTPPNDKTAGVDPAPFPVTLLLGPVTTSHLYRDDHIVYTSNGEAMGTYEYQR
Ga0137383_101387763	3300012199	Vadose Zone Soil	MKRKFIFPALMLCLGILNGCGAARPSKFYQLTLPNDKTPGADPAPFPVTLLLGPITTSHLYRDDHIVYTSNGEAMGTYEY
Ga0137382_110650712	3300012200	Vadose Zone Soil	MKRKFIFPALILCLGILNGCGAARPSKFYQITLPNDKTPGADPAPFPVTLLLGPITTSHLYRDDHIVY
Ga0137363_104129992	3300012202	Vadose Zone Soil	MKYKIIFPALMLVLGILSGCGAARPSKFYQLTAASDRPSGADRSPYAVTLLLGPITTSHL
Ga0137363_115483652	3300012202	Vadose Zone Soil	MKHKIIFAALMLAVGILNGCGAARPSKFYQLTAVSDRAAGADPSPYEITLLLGPITSSHLYRDDHIVYT
Ga0137362_101335824	3300012205	Vadose Zone Soil	MLGLGILNGCGATRPSKFYQLTAVSDRAAGADPSPYEITLLLGPITSSHL
Ga0137362_112777662	3300012205	Vadose Zone Soil	LKLKIIFPALILCLGILSGCGAARPSKFYQLTPPNDKTAGADPAPFPVTLLLGPVTTSHLYRG
Ga0137378_112244092	3300012210	Vadose Zone Soil	MPCLGILNGCGAARPSKFYQLTLPNDKTPGADPPPFPVTLLLGPITTSHLYRDDHIVYTSNGEAMGTYEYQRWA
Ga0137386_109960491	3300012351	Vadose Zone Soil	MKRKFIFPALMLCLGILNGCGAARPSKFYQLTLPNDKTPGADPAPFPVTLLLGPITTSHLYRDDHI
Ga0137384_116084072	3300012357	Vadose Zone Soil	MLCLGILNGCGAARPSKFYQLTLPNDKTPGADPPPFPVTLLLGPITTSHLYRDDHIVYTSNGEAMGTYEYQRWAEP
Ga0137390_120127391	3300012363	Vadose Zone Soil	MKRKFIFPALMLCLGILNGCGAARPSKFYQLTLPNDKTPGADPPPFPVTLLLGPITTSHLYRDDHIVYTSNGEAMGTYEY
Ga0137398_102078791	3300012683	Vadose Zone Soil	MNRKFIFPVLMLCLGILNGCGAARPSKFYQLTPAGNKAAGTDPAPFPVTLLLGPITTSHLYRDDHI
Ga0137395_112296101	3300012917	Vadose Zone Soil	MKHRTIFAALMLCLGILNGCGAARPSKFYQLTLPNDKASGADPAPFPVTLLLGPITTSHLYRDDHIVYTSNGEAMGTY
Ga0137359_104501452	3300012923	Vadose Zone Soil	MNRKFIFPALMLCLGILNGCGAARPSKFYQLTPAGNKAAGTDPAPFPVTLLLGPITTSHLYRDDHIVYTSNGE
Ga0137359_110163271	3300012923	Vadose Zone Soil	MKHKIIFPALMLALGILSGCGATRPSKFYQLTAVSDRAAGPDPSPYEITLLLGPITSSHLYRDDHIVYTSNGQA
Ga0137359_115353901	3300012923	Vadose Zone Soil	MKRKFIFPALMLGLGILNGCGAARPSKFYQLTLPNDKTPGADPAPFPVTLLLGPITTSHL
Ga0137416_113963292	3300012927	Vadose Zone Soil	MKRKFIFPALMLCLGILNGCGAARPSKFYQLTLPNDKASGADPAPFPVTLLLGPITTSHLYRDDHIVYTSNGEAMGTYEY
Ga0137416_114996351	3300012927	Vadose Zone Soil	MNYKITFRVLLLSLGILNGCGAGRPSKFYELSAPGKSTVGANPAPYPVTLLLGRMAT
Ga0137407_116774371	3300012930	Vadose Zone Soil	MKRKFIFPALMLCLGTLSGCGAARPSKFYQLTLPNDKTPGADPAPFPVTLLLGPITTSH
Ga0164301_105291332	3300012960	Soil	MKDKIIFPALILALGILSGCGAARPSKFYRLTAVSDRPSGVDPSPYAVTLLLRPMTSSHL
Ga0164305_120481381	3300012989	Soil	MKDKIIFPALILALGILSGCGAARPSKFYQLTAVSDRPSGVDPSPYAVTLLLRPMTSSHLYRDDHIVYTSTGQAM
Ga0163163_118137762	3300014325	Switchgrass Rhizosphere	MTMKYKIIFPARMLALGILSGCGAARPSKFYQLTAVSDRPSGADTSPYAVTLLLGPITPSYLYRDDHIVYTSNGQAMGT*
Ga0137411_11016292	3300015052	Vadose Zone Soil	MKHRTIFAALMLCLGTLNGCGAARPSKFYQLTLPNDKASGADPAPFPVTLLLGPITTSHLYRDDHI
Ga0137411_12802861	3300015052	Vadose Zone Soil	MKHRTIFAALMLCLGTLNGCGAARPSKFYQLTLPNDKASGADPAPFPVTLLLGPITTSHLYRDDHIVYCIETIIL
Ga0137420_13857363	3300015054	Vadose Zone Soil	MKHKIIFAALMLALGILDGCGAARPSKFYQLTAVSDRAAGADPSPYEITLLLGPITSSHLYRDDHIVYTSIGQAMGTYEY
Ga0187817_101728031	3300017955	Freshwater Sediment	MKHNITISVLILCLGILNGCGATRPSKFYQLTAPSDKTAGVDPAPYRVTLLLGPITTSHLYRDDRIVYTSNS
Ga0179592_102497062	3300020199	Vadose Zone Soil	MKRKFIFPALMLCLGVLNGCGAARPSKFYQLTLPNDKASGADPAPFPVTLLLGPITTSHLYRDDHIVYTSNGEAMGIYEYQR
Ga0210407_106531112	3300020579	Soil	MKHKFIFPALMLGLGILNGCGAARPSKFYQLTPPGNKTAGADPAPFPVTLLLGPITTSHLYRDDHIVYTSNGEAMGTYEYQRW
Ga0210407_108841461	3300020579	Soil	MKYKIIFPALMLALGILSGCGAARPSKFYQLTAVSDRPLGGDASPYAVTLLLGPITSSHLYRDDHIVYTSNRQ
Ga0210405_102023313	3300021171	Soil	MKRKFIFPAIMVCLAILNGCGAARPSKFYQLTPPNDKTPGADPAPFPVTLLLGPITTSHL
Ga0137417_10009971	3300024330	Vadose Zone Soil	MKHRTIFAALMLCLGILNGCGAARPSKFYQLTLPNDKTPGADPPPFPVTLLLGPITTSHLITTS
Ga0207685_103943801	3300025905	Corn, Switchgrass And Miscanthus Rhizosphere	MKGKFIFPALMFCLGILNGCGAARPSKFYQLTLSNDKASGADPAPFPVTLLLGPITTS
Ga0207658_116585212	3300025986	Switchgrass Rhizosphere	MKYKIIFPALMLALGILSGCGAARPSKFYQLTAVSDRPSGADTSPYAVTLLLGPITPSYLYRDDHI
Ga0209240_10416193	3300026304	Grasslands Soil	MNRKFIFPVLTLCFGILNGCGAARPSKFYQLTPAGNKIAGADPAPFPVTLLLGPITTSHLYRDDHIVYTSNGEAMGTY
Ga0209240_11638072	3300026304	Grasslands Soil	MRCKIIFSALMLCLGTLDGCGAARPSKFYQLAVPGDTAPGAEPAAYPVTLLLGPIGTSSLYRD
Ga0209240_12399982	3300026304	Grasslands Soil	MKRKFIFPALMLCLGILNGCGAARPSKFYQLTLPNDKASGADPAPFPVTLLLGPITTSHLYRDDHIVYTSNGEAMGTYEYQRWAE
Ga0209240_12547592	3300026304	Grasslands Soil	MKRKFIFPALMLCLGILNGCGAARPSKFYQLTLPNDKASGADPAPFPVTLLLGPITTSH
Ga0209240_12708361	3300026304	Grasslands Soil	MKRKLIFPALMLCLGILNGCGAARPSKFYQLTLPNDKTPGADPAPFPVTLLLGPITTSHL
Ga0209055_11161071	3300026309	Soil	MKHRTIFAALMLCLGTLNGCGAARPSKFYQLTLPNDKASGADPAPFPVTLLLGPITTSHLYRDDHIV
Ga0209131_12616932	3300026320	Grasslands Soil	MKHKIIFAALILALGILNGCGAARPSKFYQLTAVSDRAAGADPSPYEITLLLGPITSSHLYRDDHIVYTSNGQAMGTYEYQRW
Ga0257150_10682092	3300026356	Soil	MKHKIIFAALMLALGILSGCGAARPSKFYQLTAVSDRAAGADPSPYEITLLLGPITSSHLYRDDHIVYTSNGQAMGTYEY
Ga0257176_10320262	3300026361	Soil	MKRKFIFPALMLCLGILNGCGAARPSKFYQLTLPNDKTPGADPAPFPVTLLLGPITTSHLYRDDHIVYTSNGEAMG
Ga0257167_10436532	3300026376	Soil	MKCRIILPALALCLGMISGCGAARPSKFYQLTPPSNKTSGAGPAPFSVTLLLGAISTSHLYRDDHIVYTSNGEAM
Ga0257157_10701662	3300026496	Soil	VKHRNIFPALILCLGMLNGCGAARPSKFYQLTVPSEKAFGVDPAPYSVTLLLGPITT
Ga0257158_10755761	3300026515	Soil	MKRKFIFPALMLCLGILNGCGAARPSKFYQLTLPNDKTPGADPPPFPVTLLLGPIT
Ga0179587_100137411	3300026557	Vadose Zone Soil	MKYTVPVPSLVLCLAIMHGCGAARPSKFYQLTVPNDRISAQDPAPYPVALLLGPITTSHLYRDD
Ga0179587_101377263	3300026557	Vadose Zone Soil	MKRKFIFPALMLCLGVLNGCGAARPSKFYQLTLPNDKASGADPAPFPVTLLLGPITTSHLYRDDHIVYTSNG
Ga0179587_110009711	3300026557	Vadose Zone Soil	MKHKIIFAALMLALGILNGCGAARPSKFYQLTAVSDRAAGADPSPYEITLLLGPITSSHLYRDDHIVYT
Ga0209220_11288462	3300027587	Forest Soil	MKRKFMFPALMLCLGILNGCGAARPSKFYQLTPPNDRASGADPAPFPVTLLLGPITTSHLYRDDHIVYTSNGEAMG
Ga0209733_11013962	3300027591	Forest Soil	MKYKIIFPALMLCLGTLNGCGATRPSKFYQLTAASNRASSADPSPHSVTLLLGPITTSHMYRDDHIV
Ga0209528_10164533	3300027610	Forest Soil	MKYKIIFPALMLALGILSGCGAARPSKLYQLTAVSDRPLGADPSPYAVTLQLGPITSSLLYRDDHIVYTSKGQAMGTYEYQR
Ga0209117_10941782	3300027645	Forest Soil	MKYTVPVPSLVLCLAIMNGCGAARPSKFYQLTVPNDRISAQDRATYPVALLLGPITT
Ga0209074_104786151	3300027787	Agricultural Soil	MKRRFIFPALMLCLGILNGCGAARPSKFYQLTLPNDKTPGADPAPFPVTLLLGPITTSHLYRDDHIVYTSN
Ga0209180_106916421	3300027846	Vadose Zone Soil	MNYKITFPALLLSLGILNGCGAARPNKFYELTAPDNSTVGADPAPYPVTLLLGRMATSNLYRDDHIVY
Ga0209380_108763272	3300027889	Soil	MKRKFIFPALMLCLGILNGCGATRPSKFYQLTPPNDKTPGADPAPFPVTLLLGPITTSHLYRDDHIVYTSNGEAMGTYEYH
Ga0209698_101881831	3300027911	Watersheds	MKRKFIFPALMLCLGILNGCGAARPSKFYQLTLPNDKTSGADPAPFPVTLLLGPITTSHLYRDDHIVY
Ga0209526_102364521	3300028047	Forest Soil	MKYKIIFPALMLALGILSGCGAARPSKFYQLTAGSDRPLGADPSPYAVTLLLGPMTSSHLYRDDHIVYTSNGQAMGTYEYQRWA
Ga0257175_10825302	3300028673	Soil	MKRKFIFPALMLCLGILNGCGAARPSKFYQLTLPSDKASGADPAPFPVTLLLGPITTSHLYRDDHIVYTSNGEAMGIYEY
Ga0307469_109759552	3300031720	Hardwood Forest Soil	MKRKIIFTALILCLGILNGCGAARPSKFYQLTPPSDKAAGADPAPFPVTLLLGPITT
Ga0307475_101176511	3300031754	Hardwood Forest Soil	MKRKFIFPALMLCLGTLNGCGAARPSKFYQLTIPSGKTPGADPAPFPVTLLLGPITTSHLYRDDHIVYTSNGEAMGTYEYQ
Ga0307475_110717071	3300031754	Hardwood Forest Soil	MKRKFIFPALMLCLGILNGCGAARPSKFYELTPPSDKTAGADPAPFPVTLLLGPITTSHLYRDD
Ga0307478_113088161	3300031823	Hardwood Forest Soil	MKRKFIFPALMLCLGILNGCGAARPSKFYQLTIPSGKTPGADPAPFPVTLLLGPITTSHLYRDDHIVYTSNGEAMGTYEYQ
Ga0318531_102750782	3300031981	Soil	MKHRLILPAVILFWGMLNGCGAVRPSKYYQLTVPDESTLGTDPAAYSVTLLLGPITTSNL
Ga0307471_1006648101	3300032180	Hardwood Forest Soil	MRCKIIFSALTLCLGILDGCGAARPSKFYQLAVPGDTPRGAEPAAYAVTLLLGPISTSSLYRDDRIVYTSNNEAMG
Ga0307472_1001854953	3300032205	Hardwood Forest Soil	MKYKIMFPALMLGLGMLNGCGAARPSKFYQLTAVSGRPSGADPSPYAVTLLLGPII
Ga0335084_105583402	3300033004	Soil	MKFRTLIPALVLCLGIFNGCGAARPSKFYQLTVASDKTSEADPAPFAVTLLLGPITTSHLYRDDHIVYTSNGEAMGTY

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F101729

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences