Metagenome Family F101728

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F101728
Family Type	Metagenome
Number of Sequences	102
Average Sequence Length	44 residues
Representative Sequence	AELARLCDCVLAVRQGRIAATLDRAAGLDEPKLRAAIGG
Number of Associated Samples	92
Number of Associated Scaffolds	102

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.98 %
% of genes near scaffold ends (potentially truncated)	98.04 %
% of genes from short scaffolds (< 2000 bps)	96.08 %
Associated GOLD sequencing projects	92
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.47

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Bacteria (97.059 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (23.529 % of family members)
Environment Ontology (ENVO)	Unclassified (23.529 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (44.118 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 25.37% β-sheet: 19.40% Coil/Unstructured: 55.22%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.47
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.47
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 102 Family Scaffolds
PF02653	BPD_transp_2	92.16
PF13407	Peripla_BP_4	1.96
PF07883	Cupin_2	0.98
PF14294	DUF4372	0.98
PF03979	Sigma70_r1_1	0.98

COG ID	Name	Functional Category	% Frequency in 102 Family Scaffolds
COG0568	DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)	Transcription [K]	0.98

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	97.06 %
Unclassified	root	N/A	2.94 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	97.06 %
Unclassified	root	N/A	2.94 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	97.06 %
Unclassified	root	N/A	2.94 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	26.47 %
Unclassified	root	N/A	2.94 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1.96 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	26.47 %
Unclassified	root	N/A	2.94 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1.96 %

Name	Rank	Taxonomy	Distribution
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	15.69 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	10.78 %
Unclassified	root	N/A	2.94 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.98 %

Name	Rank	Taxonomy	Distribution
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	11.76 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	10.78 %
Unclassified	root	N/A	2.94 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.98 %

Name	Rank	Taxonomy	Distribution
Rhodoplanes	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes	11.76 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	10.78 %
Unclassified	root	N/A	2.94 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.98 %

Name	Rank	Taxonomy	Distribution
unclassified Rhodoplanes	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes	11.76 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	10.78 %
Unclassified	root	N/A	2.94 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.98 %

Name	Rank	Taxonomy	Distribution
Rhodoplanes sp. Z2-YC6860	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	11.76 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	10.78 %
Unclassified	root	N/A	2.94 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.98 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000858\|JGI10213J12805_10276716	All Organisms → cellular organisms → Bacteria	708	Open in IMG/M
3300002245\|JGIcombinedJ26739_101673356	All Organisms → cellular organisms → Bacteria	535	Open in IMG/M
3300004152\|Ga0062386_100514187	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	973	Open in IMG/M
3300005168\|Ga0066809_10048875	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	943	Open in IMG/M
3300005177\|Ga0066690_11044476	All Organisms → cellular organisms → Bacteria	511	Open in IMG/M
3300005332\|Ga0066388_103828488	All Organisms → cellular organisms → Bacteria	768	Open in IMG/M
3300005468\|Ga0070707_101042397	All Organisms → cellular organisms → Bacteria	783	Open in IMG/M
3300005546\|Ga0070696_100497856	All Organisms → cellular organisms → Bacteria	969	Open in IMG/M
3300005575\|Ga0066702_10378240	All Organisms → cellular organisms → Bacteria	862	Open in IMG/M
3300005602\|Ga0070762_10812374	All Organisms → cellular organisms → Bacteria	633	Open in IMG/M
3300005713\|Ga0066905_101368106	All Organisms → cellular organisms → Bacteria	639	Open in IMG/M
3300005764\|Ga0066903_104045630	All Organisms → cellular organisms → Bacteria	786	Open in IMG/M
3300005764\|Ga0066903_104972742	All Organisms → cellular organisms → Bacteria	705	Open in IMG/M
3300006049\|Ga0075417_10259302	All Organisms → cellular organisms → Bacteria	835	Open in IMG/M
3300006051\|Ga0075364_11206417	All Organisms → cellular organisms → Bacteria	513	Open in IMG/M
3300006173\|Ga0070716_100929711	All Organisms → cellular organisms → Bacteria	683	Open in IMG/M
3300006845\|Ga0075421_102737667	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	509	Open in IMG/M
3300006853\|Ga0075420_100845681	All Organisms → cellular organisms → Bacteria	788	Open in IMG/M
3300007076\|Ga0075435_100721514	All Organisms → cellular organisms → Bacteria	867	Open in IMG/M
3300007076\|Ga0075435_101469694	All Organisms → cellular organisms → Bacteria	597	Open in IMG/M
3300009088\|Ga0099830_10632545	All Organisms → cellular organisms → Bacteria	879	Open in IMG/M
3300009090\|Ga0099827_11375963	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	614	Open in IMG/M
3300009094\|Ga0111539_10368356	All Organisms → cellular organisms → Bacteria	1672	Open in IMG/M
3300009100\|Ga0075418_11706272	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	685	Open in IMG/M
3300009101\|Ga0105247_11393618	All Organisms → cellular organisms → Bacteria	567	Open in IMG/M
3300009553\|Ga0105249_10281503	All Organisms → cellular organisms → Bacteria	1661	Open in IMG/M
3300010037\|Ga0126304_10567971	All Organisms → cellular organisms → Bacteria	764	Open in IMG/M
3300010047\|Ga0126382_10004956	All Organisms → cellular organisms → Bacteria	5962	Open in IMG/M
3300010047\|Ga0126382_11449088	All Organisms → cellular organisms → Bacteria	629	Open in IMG/M
3300010321\|Ga0134067_10314308	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	607	Open in IMG/M
3300010362\|Ga0126377_12177830	All Organisms → cellular organisms → Bacteria	631	Open in IMG/M
3300010362\|Ga0126377_13363723	All Organisms → cellular organisms → Bacteria	517	Open in IMG/M
3300010376\|Ga0126381_102958700	All Organisms → cellular organisms → Bacteria	675	Open in IMG/M
3300010398\|Ga0126383_11510446	All Organisms → cellular organisms → Bacteria	761	Open in IMG/M
3300010398\|Ga0126383_13498700	All Organisms → cellular organisms → Bacteria	513	Open in IMG/M
3300011269\|Ga0137392_10426268	All Organisms → cellular organisms → Bacteria	1101	Open in IMG/M
3300011271\|Ga0137393_11136363	All Organisms → cellular organisms → Bacteria	664	Open in IMG/M
3300012198\|Ga0137364_11058601	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	611	Open in IMG/M
3300012205\|Ga0137362_10959169	All Organisms → cellular organisms → Bacteria	729	Open in IMG/M
3300012532\|Ga0137373_11264274	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	517	Open in IMG/M
3300012582\|Ga0137358_10781615	All Organisms → cellular organisms → Bacteria	635	Open in IMG/M
3300012929\|Ga0137404_11073204	All Organisms → cellular organisms → Bacteria	738	Open in IMG/M
3300012944\|Ga0137410_10682361	All Organisms → cellular organisms → Bacteria	855	Open in IMG/M
3300012944\|Ga0137410_11420035	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	604	Open in IMG/M
3300012957\|Ga0164303_10514338	All Organisms → cellular organisms → Bacteria	769	Open in IMG/M
3300012958\|Ga0164299_10740144	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	693	Open in IMG/M
3300012960\|Ga0164301_11069954	All Organisms → cellular organisms → Bacteria	639	Open in IMG/M
3300012971\|Ga0126369_11848648	All Organisms → cellular organisms → Bacteria	692	Open in IMG/M
3300012987\|Ga0164307_10660076	All Organisms → cellular organisms → Bacteria	814	Open in IMG/M
3300016270\|Ga0182036_10756269	All Organisms → cellular organisms → Bacteria	789	Open in IMG/M
3300016294\|Ga0182041_11116943	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	716	Open in IMG/M
3300018076\|Ga0184609_10293085	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	761	Open in IMG/M
3300018078\|Ga0184612_10209689	All Organisms → cellular organisms → Bacteria	1011	Open in IMG/M
3300019356\|Ga0173481_10477297	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	629	Open in IMG/M
3300020579\|Ga0210407_11069535	All Organisms → cellular organisms → Bacteria	613	Open in IMG/M
3300021361\|Ga0213872_10120413	All Organisms → cellular organisms → Bacteria	1161	Open in IMG/M
3300021401\|Ga0210393_11152074	All Organisms → cellular organisms → Bacteria	625	Open in IMG/M
3300021405\|Ga0210387_10276252	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	1474	Open in IMG/M
3300021478\|Ga0210402_10302685	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	1480	Open in IMG/M
3300021560\|Ga0126371_12461433	All Organisms → cellular organisms → Bacteria	630	Open in IMG/M
3300021560\|Ga0126371_13399631	All Organisms → cellular organisms → Bacteria	537	Open in IMG/M
3300022694\|Ga0222623_10114365	All Organisms → cellular organisms → Bacteria	1051	Open in IMG/M
3300025915\|Ga0207693_11161157	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	584	Open in IMG/M
3300025916\|Ga0207663_10268845	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	1262	Open in IMG/M
3300025945\|Ga0207679_11477025	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	623	Open in IMG/M
3300025960\|Ga0207651_10543357	All Organisms → cellular organisms → Bacteria	1009	Open in IMG/M
3300026067\|Ga0207678_11471128	All Organisms → cellular organisms → Bacteria	602	Open in IMG/M
3300026121\|Ga0207683_12160236	Not Available	505	Open in IMG/M
3300026361\|Ga0257176_1031727	All Organisms → cellular organisms → Bacteria	798	Open in IMG/M
3300027575\|Ga0209525_1090147	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	729	Open in IMG/M
3300027880\|Ga0209481_10485647	All Organisms → cellular organisms → Bacteria	637	Open in IMG/M
3300027908\|Ga0209006_11277776	All Organisms → cellular organisms → Bacteria	569	Open in IMG/M
3300028784\|Ga0307282_10552181	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	559	Open in IMG/M
3300028793\|Ga0307299_10380354	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	529	Open in IMG/M
3300028811\|Ga0307292_10229727	All Organisms → cellular organisms → Bacteria	767	Open in IMG/M
3300028878\|Ga0307278_10525603	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	516	Open in IMG/M
3300028906\|Ga0308309_10603469	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	953	Open in IMG/M
3300031226\|Ga0307497_10738995	All Organisms → cellular organisms → Bacteria	511	Open in IMG/M
3300031546\|Ga0318538_10795328	Not Available	513	Open in IMG/M
3300031561\|Ga0318528_10568614	All Organisms → cellular organisms → Bacteria	608	Open in IMG/M
3300031573\|Ga0310915_10452395	All Organisms → cellular organisms → Bacteria	912	Open in IMG/M
3300031640\|Ga0318555_10807978	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	506	Open in IMG/M
3300031668\|Ga0318542_10611214	All Organisms → cellular organisms → Bacteria	569	Open in IMG/M
3300031668\|Ga0318542_10718489	Not Available	523	Open in IMG/M
3300031747\|Ga0318502_10059125	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	2038	Open in IMG/M
3300031747\|Ga0318502_10563845	All Organisms → cellular organisms → Bacteria	684	Open in IMG/M
3300031771\|Ga0318546_10056453	All Organisms → cellular organisms → Bacteria	2462	Open in IMG/M
3300031778\|Ga0318498_10086964	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	1412	Open in IMG/M
3300031779\|Ga0318566_10306413	All Organisms → cellular organisms → Bacteria	786	Open in IMG/M
3300031793\|Ga0318548_10639742	All Organisms → cellular organisms → Bacteria	516	Open in IMG/M
3300031805\|Ga0318497_10652063	All Organisms → cellular organisms → Bacteria	590	Open in IMG/M
3300031819\|Ga0318568_10379332	All Organisms → cellular organisms → Bacteria	881	Open in IMG/M
3300031845\|Ga0318511_10003028	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	4867	Open in IMG/M
3300031890\|Ga0306925_11512692	All Organisms → cellular organisms → Bacteria	657	Open in IMG/M
3300031910\|Ga0306923_11111676	All Organisms → cellular organisms → Bacteria	850	Open in IMG/M
3300031910\|Ga0306923_11298164	All Organisms → cellular organisms → Bacteria	772	Open in IMG/M
3300031942\|Ga0310916_10606059	All Organisms → cellular organisms → Bacteria	930	Open in IMG/M
3300031959\|Ga0318530_10044483	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	1649	Open in IMG/M
3300032055\|Ga0318575_10164273	All Organisms → cellular organisms → Bacteria	1108	Open in IMG/M
3300032059\|Ga0318533_11000581	All Organisms → cellular organisms → Bacteria	613	Open in IMG/M
3300032782\|Ga0335082_11652843	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	514	Open in IMG/M
3300033233\|Ga0334722_10298660	All Organisms → cellular organisms → Bacteria	1175	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	84.31%
Host-Associated	Host-Associated	15.69%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	79.41%
Plants	Host-Associated → Plants	15.69%
Aquatic	Environmental → Aquatic	4.90%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	79.41%
Rhizosphere	Host-Associated → Plants → Rhizosphere	13.73%
Sediment	Environmental → Aquatic → Sediment	2.94%
Freshwater	Environmental → Aquatic → Freshwater	1.96%
Rhizoplane	Host-Associated → Plants → Rhizoplane	0.98%
Roots	Host-Associated → Plants → Roots	0.98%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	64.71%
Loam	Environmental → Terrestrial → Soil → Loam	13.73%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	10.78%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	2.94%
Soil	Host-Associated → Plants → Rhizosphere → Soil	2.94%
Lake	Environmental → Aquatic → Freshwater → Lake	0.98%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	0.98%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.98%
Soil	Host-Associated → Plants → Rhizoplane → Soil	0.98%
Bulk Soil	Host-Associated → Plants → Roots → Bulk Soil	0.98%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	33.33%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	28.43%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	10.78%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	8.82%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	4.90%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	2.94%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	2.94%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	2.94%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	0.98%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	0.98%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.98%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	0.98%
Unclassified	Host-Associated → Plants → Roots → Bulk Soil → Unclassified	0.98%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	23.53%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	10.78%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	9.80%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	9.80%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	7.84%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	4.90%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	4.90%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	3.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	2.94%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	2.94%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	1.96%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	1.96%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.96%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	1.96%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	0.98%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	0.98%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.98%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.98%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	0.98%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	0.98%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.98%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	0.98%
Populus Endosphere	Host-Associated → Plants → Roots → Bulk Soil → Unclassified → Populus Endosphere	0.98%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.98%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.98%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000858	Soil microbial communities from Great Prairies - Wisconsin Native Prairie soil	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300004152	Coassembly of ECP12_OM1, ECP12_OM2, ECP12_OM3	Environmental	Open in IMG/M
3300005168	Soil and rhizosphere microbial communities from Laval, Canada - mgLPC	Environmental	Open in IMG/M
3300005177	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_139	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005546	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG	Environmental	Open in IMG/M
3300005575	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_151	Environmental	Open in IMG/M
3300005602	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006049	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1	Host-Associated	Open in IMG/M
3300006051	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4	Host-Associated	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006853	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD4	Host-Associated	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300009088	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG	Environmental	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009101	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300010037	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot25	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010321	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09212015	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300011269	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaG	Environmental	Open in IMG/M
3300011271	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaG	Environmental	Open in IMG/M
3300012198	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012532	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_80_16 metaG	Environmental	Open in IMG/M
3300012582	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaG	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012944	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300012958	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300012987	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_243_MG	Environmental	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300018076	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60_coex	Environmental	Open in IMG/M
3300018078	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_60_coex	Environmental	Open in IMG/M
3300019356	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S073-202C-2 (version 2)	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300021361	Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2	Host-Associated	Open in IMG/M
3300021401	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O	Environmental	Open in IMG/M
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300022694	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_30_coex	Environmental	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025916	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025945	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025960	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026067	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026121	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026361	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NL-03-B	Environmental	Open in IMG/M
3300027575	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O1 (SPAdes)	Environmental	Open in IMG/M
3300027880	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3 (SPAdes)	Host-Associated	Open in IMG/M
3300027908	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 (SPAdes)	Environmental	Open in IMG/M
3300028784	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_121	Environmental	Open in IMG/M
3300028793	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_159	Environmental	Open in IMG/M
3300028811	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_149	Environmental	Open in IMG/M
3300028878	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_117	Environmental	Open in IMG/M
3300028906	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)	Environmental	Open in IMG/M
3300031226	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 10_S	Environmental	Open in IMG/M
3300031546	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23	Environmental	Open in IMG/M
3300031561	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f26	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031640	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f23	Environmental	Open in IMG/M
3300031668	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f23	Environmental	Open in IMG/M
3300031747	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f22	Environmental	Open in IMG/M
3300031771	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19	Environmental	Open in IMG/M
3300031778	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f24	Environmental	Open in IMG/M
3300031779	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f22	Environmental	Open in IMG/M
3300031793	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f21	Environmental	Open in IMG/M
3300031805	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f23	Environmental	Open in IMG/M
3300031819	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f21	Environmental	Open in IMG/M
3300031845	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f18	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031959	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f24	Environmental	Open in IMG/M
3300032055	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f23	Environmental	Open in IMG/M
3300032059	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27	Environmental	Open in IMG/M
3300032782	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.1	Environmental	Open in IMG/M
3300033233	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - C3_bottom	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI10213J12805_102767162	3300000858	Soil	ALVHSSDLGELARLCDSVLAVRHGRIAATLDRAAGLDEPKLRAAIGG*
JGIcombinedJ26739_1016733562	3300002245	Forest Soil	RLCDRVLAVRQGRIAATLERGASLDESTLSSAIGG*
Ga0062386_1005141872	3300004152	Bog Forest Soil	VRGGGGALINSSDLGELARLCGRVLAVRRDRIVATLDRAAGIDEAKLRAAIGG*
Ga0066809_100488752	3300005168	Soil	SSDLGELARLCDAILPVRRDRIVGRLDRAQGLDERELRAAIGG*
Ga0066690_110444762	3300005177	Soil	ALVNSSDLGELARLCDAILPVRRDRIVGRLDRSQGLNERELRAAIGG*
Ga0066388_1038284882	3300005332	Tropical Forest Soil	LTELARLCDAVLAVRYGSIVARLERADGLDEPKLRAAIGA*
Ga0070707_1010423972	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	LGELTRLCDRVLAVQQGRIAATLDRPASLDEPKLRNAIGG*
Ga0070696_1004978561	3300005546	Corn, Switchgrass And Miscanthus Rhizosphere	LVNSTDLAELARLCDRVLAVRQGRVATTLTRADGLDESKLRAAIGG*
Ga0066702_103782401	3300005575	Soil	ELARLCDRVLAVRQGRITASLDRRAGIDESKLRNAIGG*
Ga0070762_108123741	3300005602	Soil	LMSSSDLGEMTHLCDSVLAVRQGRITARLERGAGLDEPQLRAAIGG*
Ga0066905_1013681061	3300005713	Tropical Forest Soil	GGALIHSSDLGELARLCDRVLAVRQGRIAATLDRPASLDEPKLRNAIGG*
Ga0066903_1040456301	3300005764	Tropical Forest Soil	RLCDGVLAVRQGRIAATLGRASGLDEPQLRAAVGG*
Ga0066903_1049727421	3300005764	Tropical Forest Soil	LIHSSDLGELARLCDRVLAVRQGRIAAALDRPASLDESTLNKAIGG*
Ga0075417_102593022	3300006049	Populus Rhizosphere	LGELARLCDRVLAVQQGRITASHDRRAGMDEAKLRSAIGG*
Ga0075364_112064172	3300006051	Populus Endosphere	LSELARLCDAVLAVRHGRIMAAIDCSAGFDESKLRAAIGG*
Ga0070716_1009297112	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	GGALIHSSDLGELARLCDRVLAVRQGRIAATLERPASLDEPTLSSAIGG*
Ga0075421_1027376672	3300006845	Populus Rhizosphere	HSSDLGELARLCDRVLAVRQGRIAATFDRGDGVDEGKLRTAIGG*
Ga0075420_1008456811	3300006853	Populus Rhizosphere	RDVVARGGGALIQSSDLGELARLCDCVLAVRQGRIVAGLDRTAGIDEPKLRSAIGG*
Ga0075435_1007215141	3300007076	Populus Rhizosphere	SRLCDGVLAVRHGRIAATLDRASGLDEPALRAAIGG*
Ga0075435_1014696942	3300007076	Populus Rhizosphere	ALIYSSDLGELARLCDRVLAVRQGRVMASLDRRAGIDESKLRNAIGG*
Ga0099830_106325452	3300009088	Vadose Zone Soil	GGGSCALIKSSDLGELARLCGTVLAVRQDRIVATLDRGSGLDEPKLRAAIGG*
Ga0099827_113759632	3300009090	Vadose Zone Soil	AELARLCDCVLAVRQGRIAATLDRAAGLDEPKLRAAIGG*
Ga0111539_103683561	3300009094	Populus Rhizosphere	DLGELARLCDRVLAVRQGRIAATFDRGDGVDEGKLRTAIGG*
Ga0075418_117062721	3300009100	Populus Rhizosphere	ARGGGALINSSDLGELARLCDSVLAVRQGRIAASLDRAQGLDEPKLRAAIGG*
Ga0105247_113936181	3300009101	Switchgrass Rhizosphere	FVTRGGGALISSSDLGELARLCDSVLAVRQGRIITTLDRADRLDEARLRTAIGG*
Ga0105249_102815034	3300009553	Switchgrass Rhizosphere	AELTRLCDSVLAVRQGRIAATLDRTTGLDEPTLRAAIGG*
Ga0126304_105679712	3300010037	Serpentine Soil	FVARGGGALINSSDLGELARLCDSVLAVRQGRIAASLDRAQGLDEPKLRAAIGG*
Ga0126382_100049566	3300010047	Tropical Forest Soil	AELARLCDCVLAVRQRRVVATLDRADGLDEVKLRAAIGG*
Ga0126382_114490882	3300010047	Tropical Forest Soil	ARLCDRVLAVRQGRIASALERPASLDEPELRNAIGG*
Ga0134067_103143082	3300010321	Grasslands Soil	SSDLGELARLCDRVLAVRQGRITASLDRRAGIDESKLRNAIGG*
Ga0126377_121778301	3300010362	Tropical Forest Soil	RGGGALIHSSDLGELARLCDRVLAVRQGRIAAALERPASRDEPTLSSAIGG*
Ga0126377_133637232	3300010362	Tropical Forest Soil	ALLNSSDLGELARLCDRVLAVRQGRIAATLDRAQGLDEPKLQAAIGG*
Ga0126381_1029587001	3300010376	Tropical Forest Soil	ELARLCDRVLAVRQGRIAATLDRPASLDESTLNNAIGG*
Ga0126383_115104462	3300010398	Tropical Forest Soil	LCDRVLAVRQGRIAAALDRPTSLDEPTLRNAIGG*
Ga0126383_134987002	3300010398	Tropical Forest Soil	DLGELARLCDRVLAVRQGRIAAALERPASRDEPTLSSAIGG*
Ga0137392_104262681	3300011269	Vadose Zone Soil	ELARLCDCVLAVRQGRIAATLDRACGLDEPRLRAAIGG*
Ga0137393_111363632	3300011271	Vadose Zone Soil	ALINSSDLGELARLCDCVLAVRQGRIAASLDRAQGLDEPKLRAAIGG*
Ga0137364_110586012	3300012198	Vadose Zone Soil	FVGSGGGALVHSSDLGQLARLCDRVLAVRQQRIAAILDRAQGLDEPKLHAMIGG*
Ga0137362_109591691	3300012205	Vadose Zone Soil	ARLCDRVLAVRQGRIAATLERPASLDEPTLSSAIGG*
Ga0137373_112642742	3300012532	Vadose Zone Soil	GALMHSSDLGELTRLCDRVLAVRQGRIAATLDRPASLDEPKLRNAIGG*
Ga0137358_107816152	3300012582	Vadose Zone Soil	DLGELARLCDRVLAVRQGRIAATLERPASLDEPTLSSAIGG*
Ga0137404_110732042	3300012929	Vadose Zone Soil	RLCDCVLAVRQGRIAATLDHTDGLDEPRLRAAIGG*
Ga0137410_106823612	3300012944	Vadose Zone Soil	GELARLCDCVLAVRQGRIAATLDRVGGLDESKLRAAIGG*
Ga0137410_114200352	3300012944	Vadose Zone Soil	TRGGGVLINSSDLGELARLCDSVLAVRQGRIAATLDRAAGLGEPKLRAAIGG*
Ga0164303_105143382	3300012957	Soil	SDLAELGRLCDAVLAVRHSSIVARLERADGLDEPKLRAAIGA*
Ga0164299_107401441	3300012958	Soil	ELTRLCDSVLAVRQGRIAATLDRTTGLDEPTLRAAIGG*
Ga0164301_110699541	3300012960	Soil	LAELTRLCDSVLAVRQGRIAATLDRTAGLEEPTLRAAIGG*
Ga0126369_118486481	3300012971	Tropical Forest Soil	GGALIHSSDLGELARLCDRVLAVRQGRIAAALDRSASLDEPELRNAIGG*
Ga0164307_106600761	3300012987	Soil	RLCDSVLAVRQGRIAATLDRTTGLDEPTLRAAIGG*
Ga0182036_107562692	3300016270	Soil	SDLGELARLCDRVLAMRHGRVTATVDRGAALDESKLRSAIGG
Ga0182041_111169431	3300016294	Soil	VARGGGALIHSSDLGELARLCDRVLAVRQGRIAAALERPASLDEPTLSSAIGG
Ga0184609_102930851	3300018076	Groundwater Sediment	ALINSSDLGELARLCDTVLAVRQGRIAASLDRAQGLDEPRLRAAIGG
Ga0184612_102096892	3300018078	Groundwater Sediment	DLDELARLCDSVLAVRQGRIAAVLDRSSGLDEPKLCAAIGG
Ga0173481_104772971	3300019356	Soil	LAELSRLCDGVLAVRQGRIAATLDRASGLDEPALRAAIGG
Ga0210407_110695351	3300020579	Soil	ELGRLCDAVLAVRHGSIVARLERADGLDEPRLRAAIGA
Ga0213872_101204131	3300021361	Rhizosphere	GALIASSDLIELARLCDGVLAVRQGAITVRLDRAVGLDETKLRAAIGA
Ga0210393_111520741	3300021401	Soil	FARRGGAALVNSSDLGELARLCDAILPVRRDRIVGRLDRAQGLDERELRAAIGG
Ga0210387_102762521	3300021405	Soil	ARRGGAALVNSSDLGELARLCDAILPVRRDRIVGRLDRAQGLDERELRAAIGG
Ga0210402_103026853	3300021478	Soil	RLCDAVLAVRQGSVAARLERTDGLDEPKLRAAIGA
Ga0126371_124614331	3300021560	Tropical Forest Soil	RLCDAVLAVRQGAITARLDRAQGLDEATLRTAIGA
Ga0126371_133996312	3300021560	Tropical Forest Soil	DVVARGGGALTHSSDLGELARLCDRVLAVRQGRIAATLDRPASLDESTLNNAIGG
Ga0222623_101143651	3300022694	Groundwater Sediment	LSRLCDGVLAVRQGRIAATLDRASGLDEPALRAAIGG
Ga0207693_111611571	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	GGGALISSSDLGELARLCDSVLAVRQGRIVTTLDRADRLDEARLRTAIGG
Ga0207663_102688453	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	GGAALVNSSDLGELARLCDAILPVRRDRIVGRLDRAQGLDERELRAAIGG
Ga0207679_114770251	3300025945	Corn Rhizosphere	TRLCDSVLAVRQGRIAATLDRTTGLDEPTLRAAIGG
Ga0207651_105433571	3300025960	Switchgrass Rhizosphere	ELTRLCDSVLAVRQGRIAATLDRTTGLDEPTLRAAIGG
Ga0207678_114711281	3300026067	Corn Rhizosphere	RLCDSVLAVRQGRIAATLDRTTGLDEPKLRAAIGG
Ga0207683_121602361	3300026121	Miscanthus Rhizosphere	AELTRLRDSVLAVRQGRIAATLDRTAGLEEPTLRAAIGG
Ga0257176_10317271	3300026361	Soil	DLAELARLCDRVLAVRQGRITATLDRSAGIDEPTLRSAIGG
Ga0209525_10901472	3300027575	Forest Soil	MSSSDLGELIHLCDSVLAVRAGRITARLERGAGLGEPQLRAAIGG
Ga0209481_104856472	3300027880	Populus Rhizosphere	AELARLCDAVLAVRQGRITAALDRSVGFDEPKLRAAIGG
Ga0209006_112777762	3300027908	Forest Soil	VNSSDLGELARLCDAILPVRRDRIVGRLDRAQGLDERELRAAIGG
Ga0307282_105521812	3300028784	Soil	LSRLCDGVLAVRQGRIAATLDRASGLDEPTLRAAIGG
Ga0307299_103803541	3300028793	Soil	DLAELSRLCDCVLAVRQGRIAATLDRASGLDEPALRAAIGG
Ga0307292_102297271	3300028811	Soil	ALIYSSDLGELARLCDRVLAVQQGRITASHDRRAGMDETKLRSAIGG
Ga0307278_105256032	3300028878	Soil	DLAELSRLCDGVLAVRQGRIAATLDRASGLDEPTLRAAIGG
Ga0308309_106034692	3300028906	Soil	IKSSDLGELSRLCGSVLAVRRHRIVASIDRTAGLDEPRLRAEIGG
Ga0307497_107389952	3300031226	Soil	ARLCDCVLAVRQGRIAATLDRAGGLGEPKLRAAIGG
Ga0318538_107953282	3300031546	Soil	VKSSELGELAHLCGTVLAVRRDRIVATIDRAAGLDERRLRAEIGG
Ga0318528_105686141	3300031561	Soil	GELARLCDRVLAMRHGRVTATVDRGAALDESKLRSAIGG
Ga0310915_104523951	3300031573	Soil	LARLCDRVLAVRQGRIAAALERPASLDEPTLSSAIGG
Ga0318555_108079781	3300031640	Soil	RDFIHRGGGTLIASSDLTELARLCDAVLAVRYGSIVARLERADGLDEPKLRAAIGA
Ga0318542_106112142	3300031668	Soil	RHFVERGNAALVKSSELGELTHLCGTVLAVRRERIVATIDRAAGLDERRLRAEIGG
Ga0318542_107184891	3300031668	Soil	HGLIRDFIHRGGGTLIASTDLTELARLCDAVLAVRYGSIVARLERANGLDEPKLRAAIGA
Ga0318502_100591253	3300031747	Soil	IYSSDLGELARLCDRVLAMRHGRVTATVDRGAALDESKLRSAIGG
Ga0318502_105638451	3300031747	Soil	LGELARLCDRVLAVRQGRIAATLDRPASLDESTLNNAIGG
Ga0318546_100564534	3300031771	Soil	GGGALIHSSDLGELARLCDRVLAVRQGRIAATLDRPASLDESTLNNAIGG
Ga0318498_100869643	3300031778	Soil	IHSSDLGELARLCDRVLAVRQGRVAAALDRPASLDESTLNNAIGG
Ga0318566_103064132	3300031779	Soil	ARLCERVLAVHKGRIAAVLDRDGGLDETQLRAAIGG
Ga0318548_106397421	3300031793	Soil	DLGELARLCDRVLAVRQGRIAAALERPASLDEPTLSSAIGG
Ga0318497_106520632	3300031805	Soil	IHSSDLGELARLCDRVLAVRQGRIAAALERPVSLDEPTLSSAIGG
Ga0318568_103793322	3300031819	Soil	LTRLCESVLAVHGNRIVARLERSGGLDEPKLRAAIGG
Ga0318511_100030281	3300031845	Soil	DLGELARLCDRVLAVRQGRIAATLDRPASLDESTLNNAIGG
Ga0306925_115126921	3300031890	Soil	ELGELARLCGVVHVVRRDRIVASLGRADGLNEPKLHAAIGG
Ga0306923_111116762	3300031910	Soil	ARLCDRVLAVRQGRIAAALERPASLDEPTLSSAIGG
Ga0306923_112981642	3300031910	Soil	ARLCDRVLAMRHGRVTATVDRGAALDESKLRSAIGG
Ga0310916_106060592	3300031942	Soil	GGGALIHSSDLGELARLCDRVLAVRQGRIAAALERPASLDEPTLSSAIGG
Ga0318530_100444833	3300031959	Soil	LGELARLCDRVLAVRQGRVAAALDRPASLDESTLNNAIGG
Ga0318575_101642731	3300032055	Soil	LIRDFAGSGRAALMSSSDLGKLTRLCESVLAVHGNRIVARLERSGGLDEPKLRAAIGG
Ga0318533_110005812	3300032059	Soil	LGELTHLCGTVLAVRRERIVVTIDRAAGLDERRLRADIGG
Ga0335082_116528432	3300032782	Soil	AARGGGVLVNASDLSELVRLCDTVLALRQGRITARMDRAEGLDEKRLYAAIGG
Ga0334722_102986601	3300033233	Sediment	DLGELARLCDGVLAVRQGRIAASLDRASGLDEPRLRAAIGG

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F101728

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences