Metagenome / Metatranscriptome Family F101719

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F101719
Family Type	Metagenome / Metatranscriptome
Number of Sequences	102
Average Sequence Length	58 residues
Representative Sequence	MHPKLINGKVWVPDSVFGGYRQLPENDPKYMEILLWIDSQRFVELLDWIYNREKPRRK
Number of Associated Samples	73
Number of Associated Scaffolds	102

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	35.64 %
% of genes near scaffold ends (potentially truncated)	46.08 %
% of genes from short scaffolds (< 2000 bps)	81.37 %
Associated GOLD sequencing projects	64
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.69

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (59.804 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (26.471 % of family members)
Environment Ontology (ENVO)	Unclassified (32.353 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (66.667 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 26.74% β-sheet: 12.79% Coil/Unstructured: 60.47%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.69
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.69
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 102 Family Scaffolds
PF01569	PAP2	3.92
PF03795	YCII	3.92
PF00436	SSB	2.94
PF09957	VapB_antitoxin	1.96
PF02566	OsmC	1.96
PF01850	PIN	1.96
PF13676	TIR_2	1.96
PF10979	DUF2786	1.96
PF05685	Uma2	0.98
PF13479	AAA_24	0.98
PF13669	Glyoxalase_4	0.98
PF04679	DNA_ligase_A_C	0.98
PF14534	DUF4440	0.98
PF10011	DUF2254	0.98
PF03600	CitMHS	0.98
PF00248	Aldo_ket_red	0.98
PF01565	FAD_binding_4	0.98
PF00589	Phage_integrase	0.98
PF03992	ABM	0.98
PF12146	Hydrolase_4	0.98
PF12728	HTH_17	0.98
PF02371	Transposase_20	0.98
PF00535	Glycos_transf_2	0.98
PF00534	Glycos_transf_1	0.98
PF00072	Response_reg	0.98

COG ID	Name	Functional Category	% Frequency in 102 Family Scaffolds
COG2350	YciI superfamily enzyme, includes 5-CHQ dehydrochlorinase, contains active-site pHis	Secondary metabolites biosynthesis, transport and catabolism [Q]	3.92
COG0629	Single-stranded DNA-binding protein	Replication, recombination and repair [L]	2.94
COG2965	Primosomal replication protein N	Replication, recombination and repair [L]	2.94
COG1764	Organic hydroperoxide reductase OsmC/OhrA	Defense mechanisms [V]	1.96
COG1765	Uncharacterized OsmC-related protein	General function prediction only [R]	1.96
COG1793	ATP-dependent DNA ligase	Replication, recombination and repair [L]	0.98
COG3547	Transposase	Mobilome: prophages, transposons [X]	0.98
COG4636	Endonuclease, Uma2 family (restriction endonuclease fold)	General function prediction only [R]	0.98

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	59.80 %
All Organisms	root	All Organisms	40.20 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	59.80 %
cellular organisms	root	All Organisms → cellular organisms	40.20 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	59.80 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	40.20 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	59.80 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	11.76 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	3.92 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	2.94 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	59.80 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	10.78 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1.96 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	1.96 %
Deinococcus-Thermus	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Deinococcus-Thermus	0.98 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.98 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.98 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	59.80 %
Spartobacteria	class	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria	6.86 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1.96 %
Opitutae	class	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae	1.96 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1.96 %
Rhodocyclales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales	0.98 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.98 %
Deinococci	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Deinococcus-Thermus → Deinococci	0.98 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	59.80 %
Chthoniobacterales	order	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales	2.94 %
Opitutales	order	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales	1.96 %
Myxococcales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	1.96 %
Azonexaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales → Azonexaceae	0.98 %
Acetobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	0.98 %
Deinococcales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Deinococcus-Thermus → Deinococci → Deinococcales	0.98 %
Pseudonocardiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales	0.98 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	59.80 %
unclassified Myxococcales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → unclassified Myxococcales	1.96 %
Opitutaceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae	1.96 %
unclassified Chthoniobacterales	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → unclassified Chthoniobacterales	1.96 %
Chthoniobacteraceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae	0.98 %
Deinococcaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Deinococcus-Thermus → Deinococci → Deinococcales → Deinococcaceae	0.98 %
Dechloromonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales → Azonexaceae → Dechloromonas	0.98 %
Pseudonocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	0.98 %
Acetobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	0.98 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	59.80 %
Myxococcales bacterium 68-20	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → unclassified Myxococcales → Myxococcales bacterium 68-20	1.96 %
Chthoniobacterales bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → unclassified Chthoniobacterales → Chthoniobacterales bacterium	1.96 %
Opitutaceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae	1.96 %
Chthoniobacter	genus	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Chthoniobacter	0.98 %
Deinococcus	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Deinococcus-Thermus → Deinococci → Deinococcales → Deinococcaceae → Deinococcus	0.98 %
unclassified Dechloromonas	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales → Azonexaceae → Dechloromonas → unclassified Dechloromonas	0.98 %
Amycolatopsis	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Amycolatopsis	0.98 %
Acetobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	0.98 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	59.80 %
Myxococcales bacterium 68-20	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → unclassified Myxococcales → Myxococcales bacterium 68-20	1.96 %
Chthoniobacterales bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → unclassified Chthoniobacterales → Chthoniobacterales bacterium	1.96 %
Opitutaceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae	1.96 %
Dechloromonas sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales → Azonexaceae → Dechloromonas → unclassified Dechloromonas → Dechloromonas sp.	0.98 %
Chthoniobacter flavus	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Chthoniobacter → Chthoniobacter flavus	0.98 %
Deinococcus	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Deinococcus-Thermus → Deinococci → Deinococcales → Deinococcaceae → Deinococcus	0.98 %
Amycolatopsis	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Amycolatopsis	0.98 %
Acetobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	0.98 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.98 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2035918004\|FACENC_F56XM5W01EGC7K	Not Available	519	Open in IMG/M
2170459002\|FZY7DQ102JQEBR	Not Available	507	Open in IMG/M
3300000364\|INPhiseqgaiiFebDRAFT_105264881	Not Available	849	Open in IMG/M
3300000837\|AP72_2010_repI_A100DRAFT_1051291	Not Available	583	Open in IMG/M
3300000955\|JGI1027J12803_102762546	Not Available	587	Open in IMG/M
3300001867\|JGI12627J18819_10159511	All Organisms → cellular organisms → Bacteria	917	Open in IMG/M
3300002906\|JGI25614J43888_10019933	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Deinococcus-Thermus → Deinococci → Deinococcales → Deinococcaceae → Deinococcus	2144	Open in IMG/M
3300002917\|JGI25616J43925_10025678	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales → Azonexaceae → Dechloromonas → unclassified Dechloromonas → Dechloromonas sp.	2611	Open in IMG/M
3300003219\|JGI26341J46601_10019426	All Organisms → cellular organisms → Bacteria	2229	Open in IMG/M
3300003219\|JGI26341J46601_10054993	Not Available	1235	Open in IMG/M
3300003505\|JGIcombinedJ51221_10023937	All Organisms → cellular organisms → Bacteria	2169	Open in IMG/M
3300005332\|Ga0066388_100238566	All Organisms → cellular organisms → Bacteria	2454	Open in IMG/M
3300005332\|Ga0066388_105426844	Not Available	646	Open in IMG/M
3300005332\|Ga0066388_106319854	Not Available	598	Open in IMG/M
3300005332\|Ga0066388_106920740	Not Available	571	Open in IMG/M
3300005439\|Ga0070711_100198324	Not Available	1547	Open in IMG/M
3300005439\|Ga0070711_100228240	All Organisms → cellular organisms → Bacteria	1451	Open in IMG/M
3300005439\|Ga0070711_100507423	Not Available	995	Open in IMG/M
3300005445\|Ga0070708_101574765	Not Available	612	Open in IMG/M
3300005468\|Ga0070707_100053599	Not Available	3867	Open in IMG/M
3300005536\|Ga0070697_100314876	Not Available	1347	Open in IMG/M
3300005536\|Ga0070697_101396613	Not Available	625	Open in IMG/M
3300005536\|Ga0070697_101860062	Not Available	539	Open in IMG/M
3300005602\|Ga0070762_10441363	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → unclassified Myxococcales → Myxococcales bacterium 68-20	845	Open in IMG/M
3300005764\|Ga0066903_106139422	Not Available	628	Open in IMG/M
3300005764\|Ga0066903_106805378	Not Available	594	Open in IMG/M
3300005764\|Ga0066903_107412471	Not Available	566	Open in IMG/M
3300005921\|Ga0070766_10052906	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae	2288	Open in IMG/M
3300005921\|Ga0070766_10583967	Not Available	749	Open in IMG/M
3300006102\|Ga0075015_100566453	Not Available	662	Open in IMG/M
3300006173\|Ga0070716_101049589	Not Available	647	Open in IMG/M
3300006176\|Ga0070765_100579661	Not Available	1057	Open in IMG/M
3300006854\|Ga0075425_101725313	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → unclassified Chthoniobacterales → Chthoniobacterales bacterium	704	Open in IMG/M
3300006893\|Ga0073928_10114816	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae	2231	Open in IMG/M
3300010047\|Ga0126382_12067620	Not Available	544	Open in IMG/M
3300010048\|Ga0126373_10300979	All Organisms → cellular organisms → Bacteria	1599	Open in IMG/M
3300010361\|Ga0126378_13002070	Not Available	538	Open in IMG/M
3300010379\|Ga0136449_100886255	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → unclassified Chthoniobacterales → Chthoniobacterales bacterium	1457	Open in IMG/M
3300010379\|Ga0136449_101506430	Not Available	1029	Open in IMG/M
3300012362\|Ga0137361_10645113	All Organisms → cellular organisms → Bacteria	969	Open in IMG/M
3300012582\|Ga0137358_10837935	Not Available	608	Open in IMG/M
3300016270\|Ga0182036_10102355	Not Available	1950	Open in IMG/M
3300016270\|Ga0182036_11090180	Not Available	661	Open in IMG/M
3300016319\|Ga0182033_11711120	Not Available	570	Open in IMG/M
3300016341\|Ga0182035_10759702	Not Available	848	Open in IMG/M
3300016341\|Ga0182035_10811178	Not Available	821	Open in IMG/M
3300016341\|Ga0182035_11763801	Not Available	560	Open in IMG/M
3300016341\|Ga0182035_11925917	Not Available	536	Open in IMG/M
3300016357\|Ga0182032_10171211	Not Available	1627	Open in IMG/M
3300016357\|Ga0182032_10248741	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria	1381	Open in IMG/M
3300016371\|Ga0182034_11931308	Not Available	521	Open in IMG/M
3300016387\|Ga0182040_10038927	All Organisms → cellular organisms → Bacteria	2863	Open in IMG/M
3300016422\|Ga0182039_10951078	Not Available	769	Open in IMG/M
3300016422\|Ga0182039_12057987	Not Available	526	Open in IMG/M
3300016445\|Ga0182038_10056417	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria	2654	Open in IMG/M
3300020579\|Ga0210407_10113326	All Organisms → cellular organisms → Bacteria	2069	Open in IMG/M
3300020579\|Ga0210407_10122692	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1989	Open in IMG/M
3300020580\|Ga0210403_10400590	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → unclassified Myxococcales → Myxococcales bacterium 68-20	1121	Open in IMG/M
3300021181\|Ga0210388_10084026	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	2705	Open in IMG/M
3300021358\|Ga0213873_10217296	All Organisms → cellular organisms → Bacteria	597	Open in IMG/M
3300021361\|Ga0213872_10064586	All Organisms → cellular organisms → Bacteria	1653	Open in IMG/M
3300021361\|Ga0213872_10455801	Not Available	513	Open in IMG/M
3300021402\|Ga0210385_10560671	Not Available	869	Open in IMG/M
3300021403\|Ga0210397_10137385	Not Available	1695	Open in IMG/M
3300021405\|Ga0210387_10034989	All Organisms → cellular organisms → Bacteria	3980	Open in IMG/M
3300021420\|Ga0210394_11557456	Not Available	557	Open in IMG/M
3300021439\|Ga0213879_10273368	Not Available	514	Open in IMG/M
3300021444\|Ga0213878_10020307	All Organisms → cellular organisms → Bacteria	2440	Open in IMG/M
3300021444\|Ga0213878_10049684	Not Available	1634	Open in IMG/M
3300021444\|Ga0213878_10171718	All Organisms → cellular organisms → Bacteria	905	Open in IMG/M
3300021560\|Ga0126371_10359225	All Organisms → cellular organisms → Bacteria	1593	Open in IMG/M
3300025898\|Ga0207692_10967518	Not Available	561	Open in IMG/M
3300025922\|Ga0207646_10064237	Not Available	3276	Open in IMG/M
3300026557\|Ga0179587_10786686	Not Available	627	Open in IMG/M
3300027680\|Ga0207826_1000731	All Organisms → cellular organisms → Bacteria	9225	Open in IMG/M
3300027812\|Ga0209656_10012992	All Organisms → cellular organisms → Bacteria → Acidobacteria	5212	Open in IMG/M
3300027879\|Ga0209169_10231087	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	968	Open in IMG/M
3300029636\|Ga0222749_10205938	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Amycolatopsis	985	Open in IMG/M
3300029943\|Ga0311340_11180640	Not Available	617	Open in IMG/M
3300031057\|Ga0170834_106031492	Not Available	807	Open in IMG/M
3300031057\|Ga0170834_112775304	All Organisms → cellular organisms → Bacteria	581	Open in IMG/M
3300031573\|Ga0310915_10915347	Not Available	614	Open in IMG/M
3300031573\|Ga0310915_11211001	Not Available	522	Open in IMG/M
3300031719\|Ga0306917_10141584	Not Available	1776	Open in IMG/M
3300031719\|Ga0306917_10442918	Not Available	1017	Open in IMG/M
3300031719\|Ga0306917_10726612	Not Available	780	Open in IMG/M
3300031833\|Ga0310917_10102412	All Organisms → cellular organisms → Bacteria → PVC group	1845	Open in IMG/M
3300031879\|Ga0306919_10107547	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria	1974	Open in IMG/M
3300031890\|Ga0306925_10045867	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Chthoniobacter → Chthoniobacter flavus	4539	Open in IMG/M
3300031890\|Ga0306925_10445646	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	1384	Open in IMG/M
3300031910\|Ga0306923_10306759	Not Available	1813	Open in IMG/M
3300031912\|Ga0306921_10291146	All Organisms → cellular organisms → Bacteria	1912	Open in IMG/M
3300031912\|Ga0306921_12132850	Not Available	593	Open in IMG/M
3300031941\|Ga0310912_11337908	Not Available	542	Open in IMG/M
3300031946\|Ga0310910_10198362	Not Available	1556	Open in IMG/M
3300031954\|Ga0306926_12255426	All Organisms → cellular organisms → Bacteria	604	Open in IMG/M
3300032076\|Ga0306924_12336829	All Organisms → cellular organisms → Bacteria	541	Open in IMG/M
3300032205\|Ga0307472_101631847	Not Available	635	Open in IMG/M
3300032261\|Ga0306920_103115627	All Organisms → cellular organisms → Bacteria	623	Open in IMG/M
3300032261\|Ga0306920_103808607	Not Available	551	Open in IMG/M
3300033289\|Ga0310914_10264574	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria	1547	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	96.08%
Host-Associated	Host-Associated	3.92%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	91.18%
Aquatic	Environmental → Aquatic	4.90%
Plants	Host-Associated → Plants	3.92%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	90.20%
Rhizosphere	Host-Associated → Plants → Rhizosphere	3.92%
Freshwater	Environmental → Aquatic → Freshwater	2.94%
Thermal Springs	Environmental → Aquatic → Thermal Springs	0.98%
Sediment	Environmental → Aquatic → Sediment	0.98%
Peat	Environmental → Terrestrial → Peat	0.98%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	64.71%
Loam	Environmental → Terrestrial → Soil → Loam	25.49%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	3.92%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	2.94%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	0.98%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.98%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	0.98%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	46.08%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	14.71%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	13.73%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	10.78%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	4.90%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	3.92%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	2.94%
Acidic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic	0.98%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.98%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	0.98%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	26.47%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	15.69%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	10.78%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	7.84%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	4.90%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	3.92%
Bulk Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Bulk Soil	3.92%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	2.94%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	2.94%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	2.94%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	2.94%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	1.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.96%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	1.96%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	1.96%
Iron-Sulfur Acid Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring	0.98%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.98%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.98%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil	0.98%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.98%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	0.98%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.98%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2035918004	Soil microbial communities from sample at FACE Site 2 North Carolina CO2-	Environmental	Open in IMG/M
2170459002	Grass soil microbial communities from Rothamsted Park, UK - March 2009 direct MP BIO 1O1 lysis 0-21 cm	Environmental	Open in IMG/M
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000837	Forest soil microbial communities from Amazon forest - Pasture72 2010 replicate I A100	Environmental	Open in IMG/M
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300001867	Texas A ecozone_OM1H0_M2 (Combined assembly for Texas A ecozone Site metagenome samples, ASSEMBLY_DATE=20130705)	Environmental	Open in IMG/M
3300002906	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_60cm	Environmental	Open in IMG/M
3300002917	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_100cm	Environmental	Open in IMG/M
3300003219	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM3	Environmental	Open in IMG/M
3300003505	Forest soil microbial communities from Harvard Forest LTER, USA - Combined assembly of forest soil metaG samples (ASSEMBLY_DATE=20140924)	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005602	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005921	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6	Environmental	Open in IMG/M
3300006102	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2013	Environmental	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006893	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012582	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaG	Environmental	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300021180	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O	Environmental	Open in IMG/M
3300021181	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O	Environmental	Open in IMG/M
3300021358	Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R3	Host-Associated	Open in IMG/M
3300021361	Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2	Host-Associated	Open in IMG/M
3300021402	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-O	Environmental	Open in IMG/M
3300021403	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O	Environmental	Open in IMG/M
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021439	Vellozia epidendroides bulk soil microbial communities from rupestrian grasslands, the National Park of Serra do Cipo, Brazil - BS_R03	Environmental	Open in IMG/M
3300021444	Vellozia epidendroides bulk soil microbial communities from rupestrian grasslands, the National Park of Serra do Cipo, Brazil - BS_R02	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300025898	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026557	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal	Environmental	Open in IMG/M
3300027680	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 80 (SPAdes)	Environmental	Open in IMG/M
3300027812	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027879	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4 (SPAdes)	Environmental	Open in IMG/M
3300029636	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300029943	I_Palsa_N3 coassembly	Environmental	Open in IMG/M
3300031057	Oak Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031833	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
FACENCA_4095540	2035918004	Soil	MVSNMHPKLINGKVWIPDSLCGGYRPLPENDPTYMKILLRIDSQRFVELLDWVYNRDKPRRK
E1_04873150	2170459002	Grass Soil	MHPKLINGKVWVPDSVFGGYRLLPENDPKYMETLLWIDSQRFVELLDWIYNREKPDKK
INPhiseqgaiiFebDRAFT_1052648811	3300000364	Soil	VRHNLSEPPKLINGKVWVPNAEGGYRKLPENDPAYRETFLWIDSQRFVQLLEWLYKRKK*
AP72_2010_repI_A100DRAFT_10512911	3300000837	Forest Soil	MHPKLINGKVWVPDSVFGGYRQLPQNDPKYMKTLLWIDNQRFVELLDWIYNREKPRRK*
JGI1027J12803_1027625461	3300000955	Soil	PISNMHPKLINGKVWVPEPVFGAYRHLPENDPKYMETLLWIDSQRFVELLDWVYSREKPRRK*
JGI12627J18819_101595111	3300001867	Forest Soil	MHAKLINGKVWVPDSDFGGYRRLPENDPKYMEILLWIDSQRFVELLDWIYNREKARRN*
JGI25614J43888_100199332	3300002906	Grasslands Soil	MQPKLINGKVWVPEPVFGAYRQLPENDPKYMETLLWIDSQRFVELLDWIYNREKPRRK*
JGI25616J43925_100256782	3300002917	Grasslands Soil	MHPKLINGKVWVPEPVFGAYRQLPENDPKYMETLLWIDSQRFVELLDWIYNREKPRRK*
JGI26341J46601_100194261	3300003219	Bog Forest Soil	MCPKLINGKVWVPLSGGYCQLPLDDPKYDEIFLWIDSQRFVELLDWVYKRAPRVGRCRNA
JGI26341J46601_100549932	3300003219	Bog Forest Soil	MDPKLINGKVWVPDSDLGGYRQLPENDPKYMEILLWIDSQRFVELLSWIYNREKPRRK*
JGIcombinedJ51221_100239374	3300003505	Forest Soil	MCPKLINGKVWVPXSGGYCQLPLDDPKYDEIFLWIDSQRFVELLDWIYKRRK*
Ga0066388_1002385665	3300005332	Tropical Forest Soil	MHPKLINGKVWVPDIDFGGYRKLPEDDPKYMEILLWVDSQRFAELLDWVYNREKPRRK*
Ga0066388_1054268441	3300005332	Tropical Forest Soil	MNSTGPHPKLINGKIWILDSVLGGYCPLPENDPKYSETLLWIDNQRFVELL
Ga0066388_1063198541	3300005332	Tropical Forest Soil	MHPKLVNGKVWVPDSVFGGYRALAENDPKYMEILNWIDSQRFVELLNWVYNRN*
Ga0066388_1069207402	3300005332	Tropical Forest Soil	MNSTGPHPKFINGKVWVPDSVFGGYRPLPEDDPKYTETLLWIDSQRFVKLLEWVYSRDKHSR*
Ga0070711_1001983242	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	MNPKLINGKVWIYVSSAIGGGYQKLPENDPKYEEIFLWIDNQRFVELLNWIYNRRTPI*
Ga0070711_1002282401	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	MKPKLINGKVWIYVESGFAGGYQKLPEDDPKYKEILLWIDSQRFVELLDWVYRQ
Ga0070711_1005074231	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	MCPKLINGKVWVPISGGYCQLPLDDPKYNEILLWIDSQRFVELLDWVYKHRR*
Ga0070708_1015747651	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	QSMAEGRMSNMQPKLINGKVWVPDSGGYRRLSENDPKYKEILLWIDSQRFVELLDWIYNREKPRRK*
Ga0070707_1000535993	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	MSNMQPKLINGKVWVPDSGGYRRLSENDPKYKEILLWIDSQRFVELLDWIYNREKPRRK*
Ga0070697_1003148762	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	MAEGRMSNMQPKLINGKVWVPDSGGYRRLSENDPKYKEILLWIDSQRFVELLDWIYNREKPRRK*
Ga0070697_1013966132	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	MNNLKNLPKMHPRLINGKVWVPDSGGYSPLPEDHPKYKEILLWIDSQRFVELLNWVYNRDKPRRR*
Ga0070697_1018600622	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	MSPKLINGKVWIHVGSVFGGGYQKLPENDTTYEEILLWIDSQRFVELLDWVYNQRT
Ga0070762_104413631	3300005602	Soil	MLIKSWNLSNMQAKLINGKVWVLDSVFGGYRLLPENDPKYRETLLWIDSRRFVELLDWIYNREKPLKK*
Ga0066903_1061394221	3300005764	Tropical Forest Soil	MHPKLINGKVWVPDSVFGGYKQLPQNDPKYTKTLLWIDNQRFVELLDWIYNREKP
Ga0066903_1068053782	3300005764	Tropical Forest Soil	MGQTPNMQPKLINGKVWVPDSVHGGYRRLPDDDPKYMKTLLWIDSQRFVELLDWVSNREKLRKR*
Ga0066903_1074124712	3300005764	Tropical Forest Soil	MHPKLVNGKVWVPDSVFGGYRALPENDPKYLEILNWIDSQRFVELLNWVYNRN*
Ga0070766_100529062	3300005921	Soil	MCPKLINGKVWVPLSGGYCQLPLDDPKYDEIFLWIDSQRFVELLDWIYKRRK*
Ga0070766_105839672	3300005921	Soil	MCPKLINGKVWVPLNGGYCPLSPDDPKYNEIFLRIDSQRFVELLDWIYKRRNT*
Ga0075015_1005664531	3300006102	Watersheds	MCPKLINGKVWVPLSGGYCQLPLDDPKYDEIFLWIDSQRFVELLDWVYKRRK*
Ga0070716_1010495891	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	SNMHPKLINGKVWVPEPVFGAYRHLPENDPKYMETLLWIDSQRFVELLDWVYSREKPRRK
Ga0070765_1005796612	3300006176	Soil	MNPKLINGKVWIPAGGGYQKLPENDSKYNEIFLWIDSQRFVELLDWVYNRRTPKKEGHG*
Ga0075425_1017253132	3300006854	Populus Rhizosphere	MHPKLINGKVWVPDSALGAYRRLPENDPKYMETLLWIDSQRFVELLDWIYK
Ga0073928_101148162	3300006893	Iron-Sulfur Acid Spring	MCPKLINGKVWVPLSGGYCQLPLDDPKYDETFLWIDSQRFVELLDWIYKRRK*
Ga0126382_120676201	3300010047	Tropical Forest Soil	MHPKLINGKVWVPDSVFGGYKQLPQNDPKYTKTLLWIDNQRFVELLDWIYNREKPRRK*
Ga0126373_103009793	3300010048	Tropical Forest Soil	GKVWVPDIDFGGYRKLPEDDPKYMEILLWVDSQRFAELLDWVYNREKPRRK*
Ga0126378_130020702	3300010361	Tropical Forest Soil	MHPKLINGKVWVPDSVLGGYRQLPENDPKYMETLLWIDSQRFVELLDWIYNRENLEESSEEA
Ga0136449_1008862554	3300010379	Peatlands Soil	MCPKLINGKVWVPLSGGYCQLPLDDPKYDEIFLWIDSQRFVELLDWVYKRAPRVGRCRNAREAGSLPGAG*
Ga0136449_1015064301	3300010379	Peatlands Soil	PKLINGKVWIHVGSVFGGGYQKLPEDDPKYDEIFLWIDSQRFVELLDWVYNRRTPKTVI*
Ga0137361_106451131	3300012362	Vadose Zone Soil	MNNLKNLPKMHPRLISGKVWVPDSGGYSALPENDPKYRETLLWIDSQRFVELLN
Ga0137358_108379351	3300012582	Vadose Zone Soil	MSPKLINGKVWIHVGSVFGGGYQKLPENDTKYEEILLWIDSQRFVELLDWVYNQRTTKIVK*
Ga0182036_101023551	3300016270	Soil	KLINGKVWVPDSVFGGYRQLPQDDPNYMKTLLWIDNQRFVELLDWIYNREKPRRK
Ga0182036_110901802	3300016270	Soil	ADEDHGGMHPKLINGKVWVPDSVFGGYRQLPENDPKYMQILHWIDSQRFVELLDWIYNREKPQRK
Ga0182033_117111201	3300016319	Soil	MQPKLINGKVWVPDSVFGGYRQLPEKDPRYLEILLWIDSQRFVELLDWIYNREKSGRK
Ga0182035_107597023	3300016341	Soil	MQPKLINGDVWVPDSDFGGYRRLAANDPKYMETLLWIDSQRFVELLDWIYKREK
Ga0182035_108111782	3300016341	Soil	PSNMQPKLINGDVWVPDSDFDFGGYRRLPENDPKYRETLLWIDSQRFVELLDWIYKREKPRLKRSQVR
Ga0182035_117638011	3300016341	Soil	NGKVWVPDSVFGGYRQLPENDPKYMETLLWIDSQRFVELLDWIYNREKPRRK
Ga0182035_119259171	3300016341	Soil	KRTPKLINGKVWVPNLVFGGYQRLPENDPKYTDIQLWIDSQRFVELLDWVYNRHKPRASE
Ga0182032_101712111	3300016357	Soil	HPKLINGKVWVPDSVFGGYRQLPENDPKYMQILHWIDSQRFVELLDWIYNREKPQRR
Ga0182032_102487413	3300016357	Soil	MQPKLINGDVWVPDSDFDFGGYRRLPENDPKYRETLLWIDSQRFVELLDWIYKREKPRLKRSQVR
Ga0182034_119313082	3300016371	Soil	MLSNMHPKLINGKVWVPDSVLGGYQQLPENDPKYMETLLWIDSQRFVELLDWIYNREKPRRK
Ga0182040_100389274	3300016387	Soil	MQPKLINGDVWVPDSDFGGYRRLPENDPKYMEILLWIDSQRFVELLDWIYNREKARRN
Ga0182039_109510781	3300016422	Soil	MHPKLINGKVWVPDSVFGGYRQLPENDPNYIKALLWIDNQRFVELLDWIYKREKPRLKRSQVR
Ga0182039_120579871	3300016422	Soil	MQPKLINGKVWVPDSVFGGYRQLPESDPKYMETLLWIDSRRFVELLDWIYNREKIAKKV
Ga0182038_100564171	3300016445	Soil	NGKVWVPDSVFGGYRQLPENDPKYMETLLWIDSQRFVELLDWIYKREKPRLKRSQVR
Ga0210407_101133262	3300020579	Soil	MQAKLINGKVWVLDSVFGGYRLLPENDPKYMETLLWIDSRRFVELLDWIYNREKPIKK
Ga0210407_101226925	3300020579	Soil	MCPKLINGKVWVPLSGGYCQLPLDDPKYDEIFLWIDSQRFVELLDWIYKRRK
Ga0210403_104005901	3300020580	Soil	MLIKSWNLSNMQAKLINGKVWVLDSVFGGYRLLPENDPKYMETLLWIDSRRFVELLDWIYNREKPLKK
Ga0210396_106403951	3300021180	Soil	VWVPLSGGYCQLPLDDPKYDEIFLWIDSQRFVELLDWIYKRRK
Ga0210388_100840267	3300021181	Soil	MNAKGRRPLIMSPKLINGKVWIYVGSAFGGGYQKLPENDPKYNEILLWIDSQRFVELLDWIY
Ga0213873_102172962	3300021358	Rhizosphere	MHPKLINGKVWVPDSVFGGYQQLPENDPKYTEILLRIDSQRFVELLDWIYNRDKPLRAKKLLNRRCTSR
Ga0213872_100645863	3300021361	Rhizosphere	MHPKLINGKVWVPDSVFGGYRALPENDPKYMEILRWIDSQRFVELLNWVYNRD
Ga0213872_104558011	3300021361	Rhizosphere	MHPKLINGKVWVPDSVFGGYRALPENDPKYMEILYWIDSQRFVELLNWVYNRD
Ga0210385_105606713	3300021402	Soil	PLIMSPKLINGKVWIYVGSAFGGGYQKLPENDPKYNEILLWIDSQRFVELLDWIYNK
Ga0210397_101373853	3300021403	Soil	MSPKLINDKVWIYVESAFGGGYQTLPEDDPKYNEILLWIDNQRFVELLDWIYNRRT
Ga0210387_100349894	3300021405	Soil	MQAKLINGKVWVLDSVFGGYRLLPENDPKYMETLLWIDSRRFVELLDWIYNREKPLKK
Ga0210394_115574561	3300021420	Soil	MDQPKIINGKVWIHVGHAYQRLPESDPKYNEILLWIDSQRFVEL
Ga0213879_102733681	3300021439	Bulk Soil	KLINGKVWVPDSVFGGYRALPENDPKYMEILNWIDSQRFVELLNWVYNRD
Ga0213878_100203074	3300021444	Bulk Soil	MHPKLINGKVWVPDSVFGGYRALPENDPNYMEILRWIDSQRFVELLNWVYNRD
Ga0213878_100496843	3300021444	Bulk Soil	MHPKLINGKVWVPDSVFGGYRALPENDPKYMEILNWIDSQRFVELLNWVYNRD
Ga0213878_101717182	3300021444	Bulk Soil	SNMHPKLINGKVWVPDSVFGGYRALPENDPKYMEILRWIDSQRFVELLNWVYNRD
Ga0126371_103592252	3300021560	Tropical Forest Soil	MHPKLINGKVWVPDIDFGGYRKLPEDDPKYMEILLWVDSQRFAELLDWVYNREKPRRK
Ga0207692_109675181	3300025898	Corn, Switchgrass And Miscanthus Rhizosphere	ATLQLVPLLMSPKLINGKVWIHIGSVFGGGYQKLPENDPKYNEILLWIDSQRFVELLDWIYNREKFRRE
Ga0207646_100642373	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	MQSMAEGRMSNMQPKLINGKVWVPDSGGYRRLSENDPKYKEILLWIDSQRFVELLDWIYNREKPRRK
Ga0179587_107866862	3300026557	Vadose Zone Soil	MHPKLINGKVWVPEPVFGAYRQLPENDPKYMETLLWIDSQRFVELLDW
Ga0207826_10007313	3300027680	Tropical Forest Soil	MHPKLINGKVWVPDSVFSGYRQLPENDPKYMEILLWIDSQRFVELLDWIYNREKPRRK
Ga0209656_100129927	3300027812	Bog Forest Soil	MDPKLINGKVWVPDSDLGGYRQLPENDPKYMEILLWIDSQRFVELLSWIYNREKPRRK
Ga0209169_102310872	3300027879	Soil	MSPKLINDKVWIYVESAFGGGYQKLPENDPKYNEILLWIDSQRFVELLDWIYNK
Ga0222749_102059381	3300029636	Soil	MSPKLINGKVWIPASGGYQKLPENDSKYNEISLWIDSQRFVELLDWVYNQRTPKKVVYPH
Ga0311340_111806401	3300029943	Palsa	MPFRARPLDMNPKLIKGKVWIHVASPLGGGYQKLPENDPKYQEIFLGIDNQR
Ga0170834_1060314922	3300031057	Forest Soil	MCPKLINGKVWVPLSGGYCQLSSDDPKYNEIFLWIDSQRFVELLDWVYKRRN
Ga0170834_1127753041	3300031057	Forest Soil	GKVWIYVGSAFGGGYQKLPENDPKYNEILLLIDSQRFVELLDWIYNKRT
Ga0310915_109153471	3300031573	Soil	MHPKLINGKVWVPDSVFGGYRQLPQDDPNYMKTLLWIDNQRFVELLDWIYNREKPRRK
Ga0310915_112110012	3300031573	Soil	NMQPKLINGDVWVPDSDFDFGGYRRLPENDPKYRETLLWIDSQRFVELLDWIYKREKPRLKRSQVR
Ga0306917_101415846	3300031719	Soil	ADEDHGGMHPKLINGKVWVPDSVFGGYRKLPENDPKYMEILFWIDSQRFVELLDWIYNREKPRRK
Ga0306917_104429183	3300031719	Soil	DNVYTPSNMQPKLINGDVWVPDSDFGGYRRLAANDPKYMETLLWIDSQRFVELLDWIYKREKPRLKRSQVR
Ga0306917_107266121	3300031719	Soil	DEDHGGMHPKLINGKVWVPDSVFGGYRHLPENDPKYMQILHWIDSQRFVELLDWIYNREKPQRK
Ga0310917_101024122	3300031833	Soil	MHPKLINGKVWVPDSVFGGYRQLPENDPKYMQILHWIDSQRFLELLDWIYNREKPQRK
Ga0306919_101075471	3300031879	Soil	FDFGGYRRLPENDPKYRETLLWIDSQRFVELLDWIYKREKPRLKRSQVR
Ga0306925_100458677	3300031890	Soil	MHPKLINGKVWVPDSDFGGYRRLPENDPKYMEILLWIDSQRFVELLDWIYNREKARRN
Ga0306925_104456462	3300031890	Soil	MQPKLINGDVWVPDSDFGGYRRLAANDPKYMETLLWIDSQRFVELLDWIYKREKPRLKRSQVR
Ga0306923_103067591	3300031910	Soil	HGGMHPKLINGKVWVPDSVFGGYRKLPENDPKYMEILFWIDSQRFVELLDWIYNREKPRR
Ga0306921_102911462	3300031912	Soil	MHPKLINGKVWVPDSVFGGYRQLPENDPKYMQILHWIDSQRFVELLDWIYNREKPQRK
Ga0306921_121328502	3300031912	Soil	MQVFDMQPKLINGKVWVPDSVFGGYRQLPESDPKYMETLLWIDSRRFVELLDWIYNREKSRRKV
Ga0310912_113379081	3300031941	Soil	MHPKLINGKVWVPDSVFGGYRQLPENDPKYMEILLWIDSQRFVELLDWIYNREKPRRK
Ga0310910_101983621	3300031946	Soil	KLINGKVWVPDSVFGGYRQLPENDPKYMQILHWIDSQRFVELLDWIYNREKPQRK
Ga0306926_122554261	3300031954	Soil	KLINGKVWVPDSVFGGYRQLPENDPKYMETLLWIDSRRFVELLDWIYNREKSRRKV
Ga0306924_123368291	3300032076	Soil	INGKVWVPDSVFGGYRQLPENDPKYMETLLWIDSRRFVELLDWIYNREKSRRKV
Ga0307472_1016318471	3300032205	Hardwood Forest Soil	VYTPSNMHPKLINGKVWVPDSDFGGYRRLPENDPKYMEILLWIDSQRFVELLDWIYNREKSRRK
Ga0306920_1031156271	3300032261	Soil	MPGAFSEMRPKLINGKVWVPDSDFGGYRKLPENDPKYMETLLWVDSQRFVELLDWIYNRESLKGR
Ga0306920_1038086072	3300032261	Soil	MQPKLINGDVWVPDSDFDFGGYRRLPENDPKYRETLLWIDSQRFVELLDWIYKREKPR
Ga0310914_102645741	3300033289	Soil	VWVPDSDFGGYRRLAANDPKYMETLLWIDSQRFVELLDWIYKREKPRLKRSQVR

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F101719

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences