NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Metagenome / Metatranscriptome Family F101714

Metagenome / Metatranscriptome Family F101714

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
Select file to download:
   Download


Overview

Basic Information
Family ID F101714
Family Type Metagenome / Metatranscriptome
Number of Sequences 102
Average Sequence Length 44 residues
Representative Sequence QSYGVAGLPVTFFIDAQGRVAASFAGPLDATTLDHYLALIAT
Number of Associated Samples 88
Number of Associated Scaffolds 102

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 0.00 %
% of genes near scaffold ends (potentially truncated) 0.00 %
% of genes from short scaffolds (< 2000 bps) 0.00 %
Associated GOLD sequencing projects 83
AlphaFold2 3D model prediction Yes
3D model pTM-score0.46

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
Powered by Skylign

Most Common Taxonomy
Group Unclassified (100.000 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil
(32.353 % of family members)
Environment Ontology (ENVO) Unclassified
(37.255 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(48.039 % of family members)



 ⦗Top⦘

Multiple Sequence Alignments

Select alignment to view:      


 ⦗Top⦘

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 15.71%    β-sheet: 15.71%    Coil/Unstructured: 68.57%
Feature Viewer
Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.46
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


 ⦗Top⦘

Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 102 Family Scaffolds
PF03100CcmE 89.22
PF01578Cytochrom_C_asm 9.80
PF16327CcmF_C 0.98

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 102 Family Scaffolds
COG2332Cytochrome c biogenesis protein CcmEPosttranslational modification, protein turnover, chaperones [O] 89.22


 ⦗Top⦘

Phylogeny

NCBI Taxonomy

NameRankTaxonomyDistribution
UnclassifiedrootN/A100.00 %

Visualization
Powered by ApexCharts

Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link



 ⦗Top⦘

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil32.35%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil15.69%
Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil7.84%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil6.86%
PermafrostEnvironmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost6.86%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil3.92%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere3.92%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil2.94%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil1.96%
SoilEnvironmental → Terrestrial → Soil → Loam → Grasslands → Soil1.96%
Iron-Sulfur Acid SpringEnvironmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring0.98%
WatershedsEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds0.98%
Terrestrial SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil0.98%
Glacier Forefield SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil0.98%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil0.98%
Surface SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil0.98%
Peatlands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil0.98%
Arctic Peat SoilEnvironmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil0.98%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil0.98%
Permafrost SoilEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost Soil0.98%
SoilEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Soil0.98%
SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Soil0.98%
Corn RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere0.98%
Agricultural SoilEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil0.98%
SoilEnvironmental → Terrestrial → Soil → Clay → Unclassified → Soil0.98%
Populus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere0.98%

Visualization
Powered by ApexCharts



Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300000880Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A35-65cm-20A)- 1 week illuminaEnvironmentalOpen in IMG/M
3300001089Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_M3EnvironmentalOpen in IMG/M
3300001593Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2EnvironmentalOpen in IMG/M
3300001661Mediterranean Blodgett CA OM1_O3 (Mediterranean Blodgett coassembly)EnvironmentalOpen in IMG/M
3300002245Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)EnvironmentalOpen in IMG/M
3300005167Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121EnvironmentalOpen in IMG/M
3300005171Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_126EnvironmentalOpen in IMG/M
3300005172Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132EnvironmentalOpen in IMG/M
3300005177Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_139EnvironmentalOpen in IMG/M
3300005435Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaGEnvironmentalOpen in IMG/M
3300005445Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaGEnvironmentalOpen in IMG/M
3300005447Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_138EnvironmentalOpen in IMG/M
3300005450Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_131EnvironmentalOpen in IMG/M
3300005467Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaGEnvironmentalOpen in IMG/M
3300005518Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaGEnvironmentalOpen in IMG/M
3300005534Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen07_05102014_R1EnvironmentalOpen in IMG/M
3300005554Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110EnvironmentalOpen in IMG/M
3300005555Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_141EnvironmentalOpen in IMG/M
3300005574Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_143EnvironmentalOpen in IMG/M
3300005586Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_140EnvironmentalOpen in IMG/M
3300005938Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Permafrost soil replicate 2 DNA2013-191EnvironmentalOpen in IMG/M
3300006059Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2012EnvironmentalOpen in IMG/M
3300006173Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaGEnvironmentalOpen in IMG/M
3300006797Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108EnvironmentalOpen in IMG/M
3300006800Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109EnvironmentalOpen in IMG/M
3300006854Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4Host-AssociatedOpen in IMG/M
3300007982Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPM 11 metaGEnvironmentalOpen in IMG/M
3300009038Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaGEnvironmentalOpen in IMG/M
3300009088Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaGEnvironmentalOpen in IMG/M
3300009089Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaGEnvironmentalOpen in IMG/M
3300009090Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaGEnvironmentalOpen in IMG/M
3300009520Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_1_NS metaGEnvironmentalOpen in IMG/M
3300009651Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil DNA_2013-063EnvironmentalOpen in IMG/M
3300010047Tropical forest soil microbial communities from Panama - MetaG Plot_30EnvironmentalOpen in IMG/M
3300010321Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09212015EnvironmentalOpen in IMG/M
3300010361Tropical forest soil microbial communities from Panama - MetaG Plot_23EnvironmentalOpen in IMG/M
3300010400Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2EnvironmentalOpen in IMG/M
3300011269Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaGEnvironmentalOpen in IMG/M
3300011270Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaGEnvironmentalOpen in IMG/M
3300011271Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaGEnvironmentalOpen in IMG/M
3300012019Permafrost microbial communities from Nunavut, Canada - A7_5cm_12MEnvironmentalOpen in IMG/M
3300012096Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaGEnvironmentalOpen in IMG/M
3300012207Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaGEnvironmentalOpen in IMG/M
3300012211Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaGEnvironmentalOpen in IMG/M
3300012353Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_80_16 metaGEnvironmentalOpen in IMG/M
3300012359Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_80_16 metaGEnvironmentalOpen in IMG/M
3300012363Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaGEnvironmentalOpen in IMG/M
3300012918Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaGEnvironmentalOpen in IMG/M
3300012930Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300013763Permafrost microbial communities from Nunavut, Canada - A15_65cm_0MEnvironmentalOpen in IMG/M
3300013764Permafrost microbial communities from Nunavut, Canada - A28_35cm_6MEnvironmentalOpen in IMG/M
3300013768Permafrost microbial communities from Nunavut, Canada - A35_65cm_0MEnvironmentalOpen in IMG/M
3300013772Permafrost microbial communities from Nunavut, Canada - A10_80_0.25MEnvironmentalOpen in IMG/M
3300014827Permafrost microbial communities from Nunavut, Canada - A3_80cm_18MEnvironmentalOpen in IMG/M
3300015162Arctic soil microbial communities from a glacier forefield, Storglaci?ren, Tarfala, Sweden (Sample st-4c, rock/ice/stream interface)EnvironmentalOpen in IMG/M
3300018468Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111EnvironmentalOpen in IMG/M
3300019886Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2c2EnvironmentalOpen in IMG/M
3300019999Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2a1EnvironmentalOpen in IMG/M
3300021046Soil microbial communities from Shale Hills CZO, Pennsylvania, United States - 90cm depthEnvironmentalOpen in IMG/M
3300021086Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_1_08_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300021344Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2a2EnvironmentalOpen in IMG/M
3300021418Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3s2EnvironmentalOpen in IMG/M
3300024290Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK08EnvironmentalOpen in IMG/M
3300025457Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-2 shallow-092012 (SPAdes)EnvironmentalOpen in IMG/M
3300025912Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes)EnvironmentalOpen in IMG/M
3300026307Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_123 (SPAdes)EnvironmentalOpen in IMG/M
3300026310Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_2_20cm (SPAdes)EnvironmentalOpen in IMG/M
3300026315Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_126 (SPAdes)EnvironmentalOpen in IMG/M
3300026332Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_138 (SPAdes)EnvironmentalOpen in IMG/M
3300026548Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155 (SPAdes)EnvironmentalOpen in IMG/M
3300026550Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145 (SPAdes)EnvironmentalOpen in IMG/M
3300026552Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109 (SPAdes)EnvironmentalOpen in IMG/M
3300027480Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM2_M3 (SPAdes)EnvironmentalOpen in IMG/M
3300027587Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM3_M3 (SPAdes)EnvironmentalOpen in IMG/M
3300027655Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1 (SPAdes)EnvironmentalOpen in IMG/M
3300027671Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 (SPAdes)EnvironmentalOpen in IMG/M
3300027738Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM3_M1 (SPAdes)EnvironmentalOpen in IMG/M
3300027862Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300027882Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300027903Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)EnvironmentalOpen in IMG/M
3300028536Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300028906Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)EnvironmentalOpen in IMG/M
3300030904Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_202 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300031672Soil microbial communities from Risofladan, Vaasa, Finland - OX-2EnvironmentalOpen in IMG/M
3300031720Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515EnvironmentalOpen in IMG/M
3300031740Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05EnvironmentalOpen in IMG/M
3300031962Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515EnvironmentalOpen in IMG/M
3300032180Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515EnvironmentalOpen in IMG/M

Geographical Distribution
Zoom:     Powered by OpenStreetMap



 ⦗Top⦘

Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
AL20A1W_128377733300000880PermafrostSYGVAGLPVTFFIDAQGRVAASFAGPLDATTLDHYLALIAT*
JGI12683J13190_100537533300001089Forest SoilVAGLPVTFFIDAQGRVVASFAGPLDATTLDHYLALVST*
JGI12635J15846_1017849433300001593Forest SoilHQSYGVAGLPVTFFIDAQGRVVASFAGPLDATTLDHYLALVST*
JGI12053J15887_1028201133300001661Forest SoilPIVVGSYQSYGVAGLPVTFFIDAQGRVVASFAGPLDPTTLDHYLALIAP*
JGI12053J15887_1028998413300001661Forest SoilGLPVTFFIDAQGRVAASFAGPLDGPTLDHYLALIAP*
JGIcombinedJ26739_10068011933300002245Forest SoilPVGPIVSGKYQDYGVVGPPVTIFIDANGVVTASFAGPLDASTLDHYLRLIAA*
Ga0066672_1002339243300005167SoilAGSYQSYGVAGLPATFFIDRNGVVVASFTGPLDSRTLDHYLALIAQ*
Ga0066677_1048854533300005171SoilYQSYGVAGLPATFFIDPQGVVVASFTGPLDSRTLDHYLALIEP*
Ga0066683_1083730013300005172SoilLIVEGTYQSYGVVGPPVTVFIDAQGLVAATFSGPLDGPTLDHYLGLITG*
Ga0066690_1037394033300005177SoilYQSYGVAGLPATYFIDSRGLVVASFVGPLDGRTLDHYLGLLS*
Ga0070714_10094088813300005435Agricultural SoilIVDGTYQSYGVFAPPVTVFINADGLVTASFSGPLDKATLDHYLGLIAA*
Ga0070708_10030234013300005445Corn, Switchgrass And Miscanthus RhizosphereHTYPVGPIVSGRYQDYGVVGPPVTIFIDAGGVVAASFAGPLDASTLDHYVRLIAA*
Ga0066689_1089398313300005447SoilSFEQQHAHTYPVGPIVSGKYQDYGVVGPPVTIFIDANGVVTASFAGPLDASTLDHYLRLIAA*
Ga0066682_1064091413300005450SoilGLIVEGTYQSYGVVGPPVTVFIDAQGLVAATFSGPLDGPTLDHYLGLITG*
Ga0070706_10214645023300005467Corn, Switchgrass And Miscanthus RhizosphereIVSGSYGAYGVVGPPVTIFIAADGVVAASFAGPLDATTLDHYLRLIAT*
Ga0070699_10020906333300005518Corn, Switchgrass And Miscanthus RhizosphereEGTYQSYGVAGLPVTFFIDARGRVVASFGGPLDAPTLDHYLGLIPA*
Ga0070735_1042996813300005534Surface SoilLPATFFIDSQGIVVASFTGPLSANLLHHYVLLIGP*
Ga0066661_1083108323300005554SoilVAGLPATFFIDAHGVVVASFSGPLDVPTLDHYIGLISR*
Ga0066692_1018646013300005555SoilYPAGLIVEGTYQSYGVVGPPVTVFIDAQGLVAATFSGPLDGPTLDHYLGLITG*
Ga0066694_1060286823300005574SoilGVVGPPATVFINAQGVVVASFSGPLDAPTLADYLALIAP*
Ga0066691_1063397433300005586SoilPVTIFIDANGVVAASFAGPLDATTLDHYVSLISA*
Ga0066795_1003393813300005938SoilGTYQSYGVAGLPATFFIDTQGRVVASFAGPLDAPTLDHYLALIAT*
Ga0075017_10126457223300006059WatershedsSYGVAGLPETFFINAQGLVIASFAGPLDAPTLAHYLGLITS*
Ga0070716_10119660733300006173Corn, Switchgrass And Miscanthus RhizosphereFGPPVTVFIASDGIVTASFSGPLDQTTLDHYLGLIGA*
Ga0066659_1037172813300006797SoilFGVGGLPATFFIDAQGIVVASFTGPLDASTLDHYLGLISS*
Ga0066660_1065394613300006800SoilPPATVFINAQGVVVASFSGPLDAQTLSHYLGLIES*
Ga0075425_10200147513300006854Populus RhizosphereTYQSYGVVGPPVTVFIDAQGLVAASFSGPLDDQTLDHYLGLITT*
Ga0102924_137224613300007982Iron-Sulfur Acid SpringYRSYGVAGLPATFFINAVGLVVASFSGPLDPSTLDHYLSLVAP*
Ga0099829_1148080723300009038Vadose Zone SoilVGSYQAYGVAGLPATFFIDAQGRVTASFTGPLDAPTLNHYLALIST*
Ga0099830_1035872133300009088Vadose Zone SoilGSYQAFGVVGPPVTIFINADGVVTASFAGPLDASTLDHYLRLIA*
Ga0099828_1172383013300009089Vadose Zone SoilQQHPYTYPAGPIVSGSYNAYGVVGPPVTIFITADGVVAASFAGPLDATTLDHYLRLIAA*
Ga0099827_1062491913300009090Vadose Zone SoilYPVGPIVSGRYQDYGVVGPPVTIFIDAGGVVAASFAGPLDGPTLDHYVRLIAA*
Ga0099827_1198470313300009090Vadose Zone SoilYVAYGVVGPPVTIFITSDGVVAASFAGPLDSATLDHYLRLIAT*
Ga0116214_132151223300009520Peatlands SoilIVVGSYRSFGVAGLPETFFINAQGLVVASFAGPLDAPTLDHYLELIGP*
Ga0105859_128568023300009651Permafrost SoilSYGVAGLPATFFIDAKGRVVASFVGPLDAPTLDHYLGLIAT*
Ga0126382_1066398713300010047Tropical Forest SoilVVGTYQSYGVDGLPATFFINSEGVVVASFVGPLDEKTLHHYLGLLS*
Ga0134067_1042094823300010321Grasslands SoilIVAGSYQSYGVAGLPATFFIDAQGIVVASFTGPLDTPTLNHYLGLIAS*
Ga0126378_1304371113300010361Tropical Forest SoilVAGLPATFFIDAQGVVVASFTGPLDAQTLNHYLGLITT*
Ga0134122_1137023013300010400Terrestrial SoilSYGVAGLPATFFIDSKGVVVASFIGPLDAATLSRYLELIAT*
Ga0137392_1088278333300011269Vadose Zone SoilYGVVGPPVTIFIEASGVVAASFAGPLDASTLDHYVRLIAA*
Ga0137391_1114543233300011270Vadose Zone SoilGRRVAVFINGDGVVTASLAGPLDDTTIDHYLRLIAA*
Ga0137393_1105495633300011271Vadose Zone SoilYRDYGVVGPPVTIFIDVDGLVVASFAGPLDASTLDHYMRLIAA*
Ga0137393_1110519633300011271Vadose Zone SoilYQAFGVVGPPVTIFINADGVVTASFAGPLDASTLDHYLRLIA*
Ga0137393_1154879523300011271Vadose Zone SoilGSYQAYGVAGLPATFFIDAQGRVTASFTGPLDTRTLEHYLALIST*
Ga0120139_115091413300012019PermafrostAYGVFAPPVAVFINSQGVVVASFEGPLDTPTIDHYLGLIV*
Ga0137389_1118637913300012096Vadose Zone SoilHPYTYPAGPIVSGSYNAYGVVGPPVTIFITADGVVAASFAGPLDATTLDHYLRLIAA*
Ga0137381_1159158013300012207Vadose Zone SoilGLPATFFIDSQGVVVASFVGQLDAETLNHYLELIAT*
Ga0137377_1044371933300012211Vadose Zone SoilGSYQAYGVVGPPVTIFIDANGVVAASFAGPLDATTLDHYVSLISA*
Ga0137377_1107661833300012211Vadose Zone SoilVGQIVAGDYKDYGVFAPPVTFFINSAGMVVASFSGPLDPQTIDHYLGLIA*
Ga0137367_1086172813300012353Vadose Zone SoilGVAGLPATFFINSQGVVVASFAGPLDETTLHHYLGMLS*
Ga0137385_1075396433300012359Vadose Zone SoilGVVGPPATMFIDSQGVVVASFSGPLDAQTLDHYLGLIS*
Ga0137390_1141381213300012363Vadose Zone SoilAYGVVGPPVTIFITADGVVAASFAGPLDATTLDHYLRLIAA*
Ga0137390_1141381313300012363Vadose Zone SoilAYGVVGPPVTIFITADGVVAASFAGPLDATTLDHYLRLIAE*
Ga0137390_1167433213300012363Vadose Zone SoilYNAYGVVGPPVTIFITADGVVAASFAGPLDATTIDHYLRLIAA*
Ga0137396_1081669933300012918Vadose Zone SoilYGVVGPPVTIFIDVNGLVVASFAGPLDATTLDHYVRLIAA*
Ga0137396_1131762923300012918Vadose Zone SoilVNGDYQSYGVFSPPATFFINSQGVVVASFTGPLDSQTIDHYLGLIA*
Ga0137407_1156471113300012930Vadose Zone SoilPATFFIDSRGVVVASFVGPLDAATLSHYLELIGT*
Ga0120179_102075913300013763PermafrostYQAYGVFAPPVTVFINAQGLVVASFAGPLDAQTIDHYLGLIA*
Ga0120111_100898313300013764PermafrostGLPVTFFIDAQGRVAASFAGPLDATTLDHYLALIAT*
Ga0120155_105750333300013768PermafrostQSYGVAGLPVTFFIDAQGRVAASFAGPLDATTLDHYLALIAT*
Ga0120158_1037823613300013772PermafrostPIVVGSHQSYGVAGLPVTFFIDAQGRVAASFAGPLDATTLDHYLALIAT*
Ga0120171_109994433300014827PermafrostYPVGPIVSGRYQDYGVVGPPVTIFINAGGVVAASFAGPLDAPTLDHYVRLIAA*
Ga0167653_104712813300015162Glacier Forefield SoilFERRHAHPYPVGLIVDGDYQSYGVSAPPVTIFIDARGMVVASFSGPLDAPTIDHYLSLIS
Ga0066662_1111778813300018468Grasslands SoilGVVGPPVTIFIDANGVVAASFAGPLDATTLDHYLSLISA
Ga0066662_1168960213300018468Grasslands SoilGVAGLPATFFIDSKGVVVASFVGPLDSNTLYHYFSLLS
Ga0193727_118193513300019886SoilIVKGDAKDFGVFAPPVTFFIDAQGVVVASFAGPLDQQTIDHYLGLVT
Ga0193718_110348113300019999SoilGAAKDFGVFAPPVTFFIDAQGVVVASFAGPLDQQTIEHYLGLVT
Ga0215015_1028230323300021046SoilVYKRQFFIDAQGRVTASFTGPLDTPTLEHYLALIST
Ga0215015_1092090523300021046SoilMCIRDSTYPVGPIVSGRYQDYGVVGPPVTIFIDANGVVAASFAGPLDAATLDHYVRLIAA
Ga0179596_1037289833300021086Vadose Zone SoilGVVGPPVTIFITADGVVAASFAGPLDATTLDHYLRLIAA
Ga0193719_1007713613300021344SoilYGVAGLPVTFFIDAQGRVVASFGGPLDAPTLEHYLALIPT
Ga0193695_101561113300021418SoilGLPATFFLDAQGRVVASFAGPLDSTTLNHYLALIAP
Ga0247667_110402613300024290SoilAGLPATFFIDAQGHVAASFSGPLDKVTLDHYLALVAP
Ga0208850_103736613300025457Arctic Peat SoilIVVGTYQSYGVAGLPATFFIDAKGRVVASFVGPLDAPTLDHYLGLIAT
Ga0207707_1073927813300025912Corn RhizospherePVGPIVSGTYQSYGVVGPPVTVFINAEGVVTASFSGPLDATTLDHYLGLIAS
Ga0209469_109602313300026307SoilGVAALPATFFINSDGVVVASFTGPLDATTLVHYLALIAS
Ga0209239_113998413300026310Grasslands SoilGLPATFFIDSDGTVVASFTGPLDANTLGHYLGLISA
Ga0209686_106224133300026315SoilGVVGPPATVFINAQGVVVASFSGPLDAQTLSHYLGLIES
Ga0209803_121258433300026332SoilHAHTYPVGPIVSGKYQDYGVVGPPVTIFIDASGVVAASFAGPLDATTLDRYLSLISA
Ga0209161_1014120033300026548SoilAGLPATFFIDSQGVVLASFSGPLDSKTLEHYLGLIAS
Ga0209474_1059759623300026550SoilSGSYQSYGVAGLPATFFIDARGVVAASFSGPLDASTLQHYMALIAT
Ga0209577_1041735613300026552SoilEGSYQSYGVIGPPATVFINAQGMVVASFSGPLDAQTLSHYLGLIES
Ga0208993_106661313300027480Forest SoilHQSYGVAGLPATFFIDAQGRVVASFSGPLDATTLNRYLVLIAE
Ga0209220_114023313300027587Forest SoilIVVGSYQAYGVAGLPATFFIDAQNRVTASFTGPLDASTLNHYLALISP
Ga0209388_123275723300027655Vadose Zone SoilQSYGVFGPPVTVFIDAQGLVAATFSGPLDSQTLDHYLGLITK
Ga0209588_104993113300027671Vadose Zone SoilIVSGRYQDYGVVGPPVTIFIEASGVVAASFAGPLDPSTLDHYMRLIAA
Ga0208989_1029606423300027738Forest SoilGLPVTFFIDAQGRVVASFAGPLDPTTLDHYLALIAP
Ga0209701_1024583933300027862Vadose Zone SoilHPYTYPAGPIVSGSYNAYGVVGPPVTIFITADGVVAASFAGPLDATTLDHYLRLIAE
Ga0209701_1024889433300027862Vadose Zone SoilHPYTYPAGPIVSGSYNAYGVVGPPVTIFITADGVVAASFAGPLDATTLDHYLRLIAA
Ga0209701_1071015713300027862Vadose Zone SoilVGPIVSGRYQDYGVVGPPVTIFIDANGVVAASFAGPLDASTLDHYVRLIAA
Ga0209701_1072353223300027862Vadose Zone SoilVSGSYQAFGVVGPPVTIFINADGVVTASFAGPLDASTLDHYLRLIA
Ga0209590_1037614333300027882Vadose Zone SoilGRYQDYGVVGPPVTIFIDAGGVVAASFAGPLDGPTLDHYVRLIAA
Ga0209488_1073064233300027903Vadose Zone SoilAGPIVSGSYNAYGVVGPPVTIFITADGVVAASFAGPLDATTLDHYLRLIAA
Ga0137415_1077609133300028536Vadose Zone SoilYGVAGLPVTFFIDAQGRVVASFGGPLDTPTLDHYLALMKT
Ga0137415_1144901913300028536Vadose Zone SoilIVSGSYQDYGVVGPPVTIFIDVNGLVVASFAGPLDATTLDHYVRLIAA
Ga0308309_1185815423300028906SoilIVVGSYQSYGVGGLPATFFIDPQGLVTASFSGPLDKTTLDHYLALITTI
Ga0308198_103219913300030904SoilQVPAGDTQAYGVFAPPVTFFINAQGVVVASFAGPLDAQTIDHYLGLIA
Ga0307373_1030608133300031672SoilYGVAGLPATFFIDSQGLVVASFSGPLDAPTLAHYLALIAS
Ga0307469_1070861233300031720Hardwood Forest SoilYQSYGVVGPPVTVFIDAQGLVAATFSGPLDGPTLDHYLGLITK
Ga0307468_10112754213300031740Hardwood Forest SoilFAPPVTFFIDAQGVVVASFAGPLDQRTIDHYLGLVT
Ga0307479_1163539413300031962Hardwood Forest SoilIVTGSYQSYGVAGLPVTFFIDSRGLVTASFAGPLDPTTLDHYLALITS
Ga0307471_10033060813300032180Hardwood Forest SoilPVGPIVSGSYQDYGVVGPPVTIFIDVNGVVVASFAGPLDASTLDHYMRLIAA


 ⦗Top⦘


© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.