NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F101707

Metagenome / Metatranscriptome Family F101707

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F101707
Family Type Metagenome / Metatranscriptome
Number of Sequences 102
Average Sequence Length 39 residues
Representative Sequence MKHALSEAALPRGFRFAATACGLKKTGALDLAILSSD
Number of Associated Samples 93
Number of Associated Scaffolds 102

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 87.25 %
% of genes near scaffold ends (potentially truncated) 100.00 %
% of genes from short scaffolds (< 2000 bps) 93.14 %
Associated GOLD sequencing projects 91
AlphaFold2 3D model prediction Yes
3D model pTM-score0.32

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (100.000 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil
(17.647 % of family members)
Environment Ontology (ENVO) Unclassified
(28.431 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(56.863 % of family members)


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Multiple Sequence Alignments

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 36.92%    β-sheet: 0.00%    Coil/Unstructured: 63.08%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  		pTM-score: 0.32
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 102 Family Scaffolds
PF14698ASL_C2 91.18
PF00764Arginosuc_synth 3.92
PF00206Lyase_1 0.98
PF02355SecD_SecF 0.98
PF00696AA_kinase 0.98

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 102 Family Scaffolds
COG0137Argininosuccinate synthaseAmino acid transport and metabolism [E] 3.92
COG0341Preprotein translocase subunit SecFIntracellular trafficking, secretion, and vesicular transport [U] 0.98
COG0342Preprotein translocase subunit SecDIntracellular trafficking, secretion, and vesicular transport [U] 0.98

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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms100.00 %
UnclassifiedrootN/A0.00 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
2170459010|GIO7OMY02IKXESAll Organisms → cellular organisms → Bacteria524Open in IMG/M
3300000891|JGI10214J12806_10810753All Organisms → cellular organisms → Bacteria1258Open in IMG/M
3300001593|JGI12635J15846_10124818All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1813Open in IMG/M
3300002245|JGIcombinedJ26739_101510438All Organisms → cellular organisms → Bacteria567Open in IMG/M
3300002910|JGI25615J43890_1000366All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia5197Open in IMG/M
3300002914|JGI25617J43924_10029056All Organisms → cellular organisms → Bacteria1956Open in IMG/M
3300004092|Ga0062389_101657352All Organisms → cellular organisms → Bacteria821Open in IMG/M
3300004152|Ga0062386_100558901All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria933Open in IMG/M
3300005447|Ga0066689_10002354All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae7129Open in IMG/M
3300005468|Ga0070707_100465636All Organisms → cellular organisms → Bacteria1225Open in IMG/M
3300005536|Ga0070697_101840233All Organisms → cellular organisms → Bacteria542Open in IMG/M
3300005538|Ga0070731_10956860All Organisms → cellular organisms → Bacteria567Open in IMG/M
3300005538|Ga0070731_11004314All Organisms → cellular organisms → Bacteria552Open in IMG/M
3300005544|Ga0070686_100190011All Organisms → cellular organisms → Bacteria1465Open in IMG/M
3300005575|Ga0066702_10566076All Organisms → cellular organisms → Bacteria685Open in IMG/M
3300005586|Ga0066691_10241217All Organisms → cellular organisms → Bacteria1060Open in IMG/M
3300005587|Ga0066654_10809015All Organisms → cellular organisms → Bacteria → Proteobacteria532Open in IMG/M
3300005712|Ga0070764_10361941All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria850Open in IMG/M
3300005713|Ga0066905_100694833All Organisms → cellular organisms → Bacteria872Open in IMG/M
3300006173|Ga0070716_101462872All Organisms → cellular organisms → Bacteria557Open in IMG/M
3300006175|Ga0070712_100342948All Organisms → cellular organisms → Bacteria1220Open in IMG/M
3300006175|Ga0070712_101644605All Organisms → cellular organisms → Bacteria562Open in IMG/M
3300006806|Ga0079220_10102636All Organisms → cellular organisms → Bacteria1486Open in IMG/M
3300006871|Ga0075434_102321837All Organisms → cellular organisms → Bacteria539Open in IMG/M
3300007265|Ga0099794_10249544All Organisms → cellular organisms → Bacteria915Open in IMG/M
3300009038|Ga0099829_10381121All Organisms → cellular organisms → Bacteria1164Open in IMG/M
3300009088|Ga0099830_10217261All Organisms → cellular organisms → Bacteria1502Open in IMG/M
3300009089|Ga0099828_10218199All Organisms → cellular organisms → Bacteria1704Open in IMG/M
3300009137|Ga0066709_100358397All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae2007Open in IMG/M
3300009629|Ga0116119_1083933All Organisms → cellular organisms → Bacteria804Open in IMG/M
3300009700|Ga0116217_10126172All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1727Open in IMG/M
3300010048|Ga0126373_10214570All Organisms → cellular organisms → Bacteria1873Open in IMG/M
3300010343|Ga0074044_10417252All Organisms → cellular organisms → Bacteria879Open in IMG/M
3300010359|Ga0126376_10905823All Organisms → cellular organisms → Bacteria872Open in IMG/M
3300010361|Ga0126378_10906587All Organisms → cellular organisms → Bacteria988Open in IMG/M
3300010362|Ga0126377_13116310All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria535Open in IMG/M
3300012199|Ga0137383_10589525All Organisms → cellular organisms → Bacteria813Open in IMG/M
3300012202|Ga0137363_10342633All Organisms → cellular organisms → Bacteria1235Open in IMG/M
3300012202|Ga0137363_11171930All Organisms → cellular organisms → Bacteria654Open in IMG/M
3300012361|Ga0137360_10583366All Organisms → cellular organisms → Bacteria956Open in IMG/M
3300012361|Ga0137360_10608181All Organisms → cellular organisms → Bacteria936Open in IMG/M
3300012362|Ga0137361_11064294All Organisms → cellular organisms → Bacteria729Open in IMG/M
3300012683|Ga0137398_10981731All Organisms → cellular organisms → Bacteria586Open in IMG/M
3300012923|Ga0137359_10559291All Organisms → cellular organisms → Bacteria1006Open in IMG/M
3300012923|Ga0137359_11735865All Organisms → cellular organisms → Bacteria511Open in IMG/M
3300015053|Ga0137405_1244686All Organisms → cellular organisms → Bacteria740Open in IMG/M
3300015054|Ga0137420_1324600All Organisms → cellular organisms → Bacteria958Open in IMG/M
3300016270|Ga0182036_10907532All Organisms → cellular organisms → Bacteria722Open in IMG/M
3300017822|Ga0187802_10273868All Organisms → cellular organisms → Bacteria655Open in IMG/M
3300018482|Ga0066669_11401742All Organisms → cellular organisms → Bacteria633Open in IMG/M
3300019788|Ga0182028_1498568All Organisms → cellular organisms → Bacteria1509Open in IMG/M
3300019887|Ga0193729_1274976All Organisms → cellular organisms → Bacteria515Open in IMG/M
3300019890|Ga0193728_1357659All Organisms → cellular organisms → Bacteria521Open in IMG/M
3300020579|Ga0210407_10465521All Organisms → cellular organisms → Bacteria988Open in IMG/M
3300020579|Ga0210407_10695603All Organisms → cellular organisms → Bacteria788Open in IMG/M
3300020583|Ga0210401_10042032All Organisms → cellular organisms → Bacteria4327Open in IMG/M
3300021088|Ga0210404_10238826All Organisms → cellular organisms → Bacteria985Open in IMG/M
3300021181|Ga0210388_11233560All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis633Open in IMG/M
3300021401|Ga0210393_10187355All Organisms → cellular organisms → Bacteria1670Open in IMG/M
3300021402|Ga0210385_11326541All Organisms → cellular organisms → Bacteria551Open in IMG/M
3300021405|Ga0210387_11439381All Organisms → cellular organisms → Bacteria592Open in IMG/M
3300021432|Ga0210384_10531724All Organisms → cellular organisms → Bacteria1058Open in IMG/M
3300021432|Ga0210384_11813526All Organisms → cellular organisms → Bacteria516Open in IMG/M
3300021478|Ga0210402_10485654All Organisms → cellular organisms → Bacteria1147Open in IMG/M
3300021560|Ga0126371_13534971All Organisms → cellular organisms → Bacteria527Open in IMG/M
3300024290|Ga0247667_1009148All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi2024Open in IMG/M
3300025419|Ga0208036_1041572All Organisms → cellular organisms → Bacteria814Open in IMG/M
3300025906|Ga0207699_10214216All Organisms → cellular organisms → Bacteria1311Open in IMG/M
3300026835|Ga0207782_104198All Organisms → cellular organisms → Bacteria1346Open in IMG/M
3300027014|Ga0207815_1005279All Organisms → cellular organisms → Bacteria1760Open in IMG/M
3300027297|Ga0208241_1004305All Organisms → cellular organisms → Bacteria1807Open in IMG/M
3300027516|Ga0207761_1085485All Organisms → cellular organisms → Bacteria614Open in IMG/M
3300027562|Ga0209735_1025763All Organisms → cellular organisms → Bacteria1219Open in IMG/M
3300027605|Ga0209329_1106622All Organisms → cellular organisms → Bacteria614Open in IMG/M
3300027643|Ga0209076_1086550All Organisms → cellular organisms → Bacteria891Open in IMG/M
3300027655|Ga0209388_1110350All Organisms → cellular organisms → Bacteria787Open in IMG/M
3300027674|Ga0209118_1087368All Organisms → cellular organisms → Bacteria889Open in IMG/M
3300027678|Ga0209011_1189127All Organisms → cellular organisms → Bacteria565Open in IMG/M
3300027698|Ga0209446_1095449All Organisms → cellular organisms → Bacteria762Open in IMG/M
3300027817|Ga0209112_10080458All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium 20-64-71032Open in IMG/M
3300027862|Ga0209701_10318521All Organisms → cellular organisms → Bacteria888Open in IMG/M
3300027884|Ga0209275_10246006All Organisms → cellular organisms → Bacteria980Open in IMG/M
3300027884|Ga0209275_10389896All Organisms → cellular organisms → Bacteria784Open in IMG/M
3300027884|Ga0209275_10926311All Organisms → cellular organisms → Bacteria502Open in IMG/M
3300027905|Ga0209415_10932891All Organisms → cellular organisms → Bacteria586Open in IMG/M
3300028775|Ga0302231_10378219All Organisms → cellular organisms → Bacteria596Open in IMG/M
3300028781|Ga0302223_10218220All Organisms → cellular organisms → Bacteria629Open in IMG/M
3300030043|Ga0302306_10255188All Organisms → cellular organisms → Bacteria673Open in IMG/M
3300030991|Ga0073994_10066141All Organisms → cellular organisms → Bacteria567Open in IMG/M
3300031057|Ga0170834_110581138All Organisms → cellular organisms → Bacteria597Open in IMG/M
3300031753|Ga0307477_10550283All Organisms → cellular organisms → Bacteria781Open in IMG/M
3300031770|Ga0318521_10939461All Organisms → cellular organisms → Bacteria529Open in IMG/M
3300031771|Ga0318546_10055847All Organisms → cellular organisms → Bacteria2475Open in IMG/M
3300031823|Ga0307478_10195280All Organisms → cellular organisms → Bacteria1626Open in IMG/M
3300031897|Ga0318520_10207567All Organisms → cellular organisms → Bacteria1157Open in IMG/M
3300031942|Ga0310916_11311891All Organisms → cellular organisms → Bacteria595Open in IMG/M
3300031954|Ga0306926_11055514All Organisms → cellular organisms → Bacteria963Open in IMG/M
3300032064|Ga0318510_10319497All Organisms → cellular organisms → Bacteria650Open in IMG/M
3300032076|Ga0306924_10084647All Organisms → cellular organisms → Bacteria3561Open in IMG/M
3300032180|Ga0307471_101693106All Organisms → cellular organisms → Bacteria786Open in IMG/M
3300032783|Ga0335079_11108734All Organisms → cellular organisms → Bacteria801Open in IMG/M
3300034163|Ga0370515_0258553All Organisms → cellular organisms → Bacteria738Open in IMG/M


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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil17.65%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil17.65%
Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil7.84%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere5.88%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil4.90%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil4.90%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil3.92%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil3.92%
SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Soil3.92%
Bog Forest SoilEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil2.94%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil2.94%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil2.94%
PalsaEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa2.94%
PeatlandEnvironmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland1.96%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil1.96%
Surface SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil1.96%
Peatlands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil1.96%
Freshwater SedimentEnvironmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment0.98%
Agricultural SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil0.98%
Grass SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil0.98%
Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil0.98%
SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Soil0.98%
Untreated Peat SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil0.98%
Bog Forest SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil0.98%
FenEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Fen0.98%
Switchgrass RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere0.98%
Populus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere0.98%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
2170459010Grass soil microbial communities from Rothamsted Park, UK - December 2009 direct MP BIO1O1 lysis 0-9cm (no DNA from 10 to 21cm!!!)EnvironmentalOpen in IMG/M
3300000891Soil microbial communities from Great Prairies - Wisconsin, Continuous corn soilEnvironmentalOpen in IMG/M
3300001593Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2EnvironmentalOpen in IMG/M
3300002245Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)EnvironmentalOpen in IMG/M
3300002910Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_80cmEnvironmentalOpen in IMG/M
3300002914Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cmEnvironmentalOpen in IMG/M
3300004092Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3EnvironmentalOpen in IMG/M
3300004152Coassembly of ECP12_OM1, ECP12_OM2, ECP12_OM3EnvironmentalOpen in IMG/M
3300005447Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_138EnvironmentalOpen in IMG/M
3300005468Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaGEnvironmentalOpen in IMG/M
3300005536Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaGEnvironmentalOpen in IMG/M
3300005538Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1EnvironmentalOpen in IMG/M
3300005544Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaGEnvironmentalOpen in IMG/M
3300005575Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_151EnvironmentalOpen in IMG/M
3300005586Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_140EnvironmentalOpen in IMG/M
3300005587Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_103EnvironmentalOpen in IMG/M
3300005712Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4EnvironmentalOpen in IMG/M
3300005713Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)EnvironmentalOpen in IMG/M
3300006173Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaGEnvironmentalOpen in IMG/M
3300006175Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaGEnvironmentalOpen in IMG/M
3300006806Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100EnvironmentalOpen in IMG/M
3300006871Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3Host-AssociatedOpen in IMG/M
3300007265Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1EnvironmentalOpen in IMG/M
3300009038Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaGEnvironmentalOpen in IMG/M
3300009088Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaGEnvironmentalOpen in IMG/M
3300009089Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaGEnvironmentalOpen in IMG/M
3300009137Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158EnvironmentalOpen in IMG/M
3300009629Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_11_100EnvironmentalOpen in IMG/M
3300009700Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_4_PS metaGEnvironmentalOpen in IMG/M
3300010048Tropical forest soil microbial communities from Panama - MetaG Plot_11EnvironmentalOpen in IMG/M
3300010343Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM1EnvironmentalOpen in IMG/M
3300010359Tropical forest soil microbial communities from Panama - MetaG Plot_15EnvironmentalOpen in IMG/M
3300010361Tropical forest soil microbial communities from Panama - MetaG Plot_23EnvironmentalOpen in IMG/M
3300010362Tropical forest soil microbial communities from Panama - MetaG Plot_22EnvironmentalOpen in IMG/M
3300012199Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaGEnvironmentalOpen in IMG/M
3300012202Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaGEnvironmentalOpen in IMG/M
3300012361Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaGEnvironmentalOpen in IMG/M
3300012362Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaGEnvironmentalOpen in IMG/M
3300012683Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaGEnvironmentalOpen in IMG/M
3300012923Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaGEnvironmentalOpen in IMG/M
3300015053Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (PacBio error correction)EnvironmentalOpen in IMG/M
3300015054Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (PacBio error correction)EnvironmentalOpen in IMG/M
3300016270Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080EnvironmentalOpen in IMG/M
3300017822Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_2EnvironmentalOpen in IMG/M
3300018482Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118EnvironmentalOpen in IMG/M
3300019788Permafrost microbial communities from Stordalen Mire, Sweden - 712E1D metaG (PacBio error correction)EnvironmentalOpen in IMG/M
3300019887Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1c2EnvironmentalOpen in IMG/M
3300019890Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1c1EnvironmentalOpen in IMG/M
3300020579Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-MEnvironmentalOpen in IMG/M
3300020583Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-MEnvironmentalOpen in IMG/M
3300021088Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-MEnvironmentalOpen in IMG/M
3300021181Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-OEnvironmentalOpen in IMG/M
3300021401Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-OEnvironmentalOpen in IMG/M
3300021402Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-OEnvironmentalOpen in IMG/M
3300021405Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-OEnvironmentalOpen in IMG/M
3300021432Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-MEnvironmentalOpen in IMG/M
3300021478Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-MEnvironmentalOpen in IMG/M
3300021560Tropical forest soil microbial communities from Panama - MetaG Plot_4EnvironmentalOpen in IMG/M
3300024290Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK08EnvironmentalOpen in IMG/M
3300025419Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_11_100 (SPAdes)EnvironmentalOpen in IMG/M
3300025906Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300026835Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 60 (SPAdes)EnvironmentalOpen in IMG/M
3300027014Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 4 (SPAdes)EnvironmentalOpen in IMG/M
3300027297Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF047 (SPAdes)EnvironmentalOpen in IMG/M
3300027516Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 34 (SPAdes)EnvironmentalOpen in IMG/M
3300027562Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_M2 (SPAdes)EnvironmentalOpen in IMG/M
3300027605Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_M3 (SPAdes)EnvironmentalOpen in IMG/M
3300027643Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3 (SPAdes)EnvironmentalOpen in IMG/M
3300027655Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1 (SPAdes)EnvironmentalOpen in IMG/M
3300027674Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_M1 (SPAdes)EnvironmentalOpen in IMG/M
3300027678Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_M3 (SPAdes)EnvironmentalOpen in IMG/M
3300027698Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP04_OM2 (SPAdes)EnvironmentalOpen in IMG/M
3300027817Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM3H0_O3 (SPAdes)EnvironmentalOpen in IMG/M
3300027862Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300027884Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2 (SPAdes)EnvironmentalOpen in IMG/M
3300027905Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007 (SPAdes)EnvironmentalOpen in IMG/M
3300028775Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N2_2EnvironmentalOpen in IMG/M
3300028781Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E2_3EnvironmentalOpen in IMG/M
3300030043Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_E3_1EnvironmentalOpen in IMG/M
3300030991Metatranscriptome of forest soil microbial communities from Montana, USA - Site 5 -Soil GP-1A (Eukaryote Community Metatranscriptome)EnvironmentalOpen in IMG/M
3300031057Oak Coassembly Site 11 - Champenoux / Amance forestEnvironmentalOpen in IMG/M
3300031753Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515EnvironmentalOpen in IMG/M
3300031770Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f17EnvironmentalOpen in IMG/M
3300031771Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19EnvironmentalOpen in IMG/M
3300031823Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05EnvironmentalOpen in IMG/M
3300031897Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16EnvironmentalOpen in IMG/M
3300031942Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176EnvironmentalOpen in IMG/M
3300031954Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)EnvironmentalOpen in IMG/M
3300032064Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f17EnvironmentalOpen in IMG/M
3300032076Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)EnvironmentalOpen in IMG/M
3300032180Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515EnvironmentalOpen in IMG/M
3300032783Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3EnvironmentalOpen in IMG/M
3300034163Peat soil microbial communities from wetlands in Alaska, United States - Goldstream_04D_14EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
F62_090261702170459010Grass SoilMKYALSEAALPLGFRFSATACGLKKTGALDLALLSSDVPASSA
JGI10214J12806_1081075323300000891SoilMTQAPPESALPRGFRFAATACGLKKTGALDLALIS
JGI12635J15846_1012481833300001593Forest SoilMKHALSEASLPHGFRFAATACGLKKTGALDLGLLCSDEPASA
JGIcombinedJ26739_10151043813300002245Forest SoilLKHALSEASLPRGFRFAATACGLKKTGALDLAILSSEVP
JGI25615J43890_100036653300002910Grasslands SoilMTPPRMQHALSEASLPRGFRFAATACGLKKTGALDFAILSS
JGI25617J43924_1002905633300002914Grasslands SoilLLKHALSEASLPRGFRFAATACGLKKTGALDLAILSSDVP
Ga0062389_10165735223300004092Bog Forest SoilMKHALSEASLPRGFRMAATACGLKKTGALDLALLSSDVPAS
Ga0062386_10055890113300004152Bog Forest SoilMKYALSEAALPRGFRFSATACGLKKTGALDLALLSSDVPA
Ga0066689_1000235413300005447SoilMKQAPSEAALPRGFRFAATACGLKKTGALDLAILSSDVSASAAA
Ga0070707_10046563623300005468Corn, Switchgrass And Miscanthus RhizosphereLNGVRKVIDMKHALSEAALPRGFRFAATACGLKKTGALDLAILSSD
Ga0070697_10184023313300005536Corn, Switchgrass And Miscanthus RhizosphereMKHALSEASLPRGFRFAATACGLKKTGALDLAILSSDVLA
Ga0070731_1095686013300005538Surface SoilMKHAPSEASLPRGFRFAATACGLKKTGALDLAVIT
Ga0070731_1100431413300005538Surface SoilMKHALSEASLPRGFRFAGLACGLKKTGALDLAIIS
Ga0070686_10019001123300005544Switchgrass RhizosphereMTQAPPESALPKGFRFAATACGLKKTGALDLALISSDVSA
Ga0066702_1056607623300005575SoilMNHAPSEAALPRGFRFAATACGLKKTGALDLAIFSSDVPASA
Ga0066691_1024121723300005586SoilMKHALSEAALPRGFRFAATACGLKKTGALDLAILSSD
Ga0066654_1080901513300005587SoilMKQAPSEAALPRGFRFAATACGLKKTGALDLAILSSDVSASAA
Ga0070764_1036194113300005712SoilMKHALSEASLPRGFRFAGLACGLKKTGALDLAIISSDV
Ga0066905_10069483313300005713Tropical Forest SoilMTQAPPESALPKGFRFAAAACGLKKTGALDLALISSDV
Ga0070716_10146287213300006173Corn, Switchgrass And Miscanthus RhizosphereVTQPPTEAALPKGFRFAATACGLKKTGALDLAILSSDV
Ga0070712_10034294813300006175Corn, Switchgrass And Miscanthus RhizosphereMKPVLSEAAVPRGFRFSATACGLKKTGALDLALLSSDVPAS
Ga0070712_10164460523300006175Corn, Switchgrass And Miscanthus RhizosphereMTQPPPESALPKGFRFAATACGLKKTGALDLALISSDVPAS
Ga0079220_1010263623300006806Agricultural SoilMKHALSEAALPLGFRFAATACGLKKTGALDLAILSSDVP
Ga0075434_10232183713300006871Populus RhizosphereMTPAPPESALPKGFRFAATACGLKKTGALDLALISSD
Ga0099794_1024954413300007265Vadose Zone SoilMQHALSEAALPRGFRFAATACGLKKTGALDLAILSSDVPA
Ga0099829_1038112113300009038Vadose Zone SoilMTPPAMQHALSEASLPRGFRFAATACGLKKTGALDFAILSSEVPASAA
Ga0099830_1021726113300009088Vadose Zone SoilMQHALSEAALPRGFRFAATACGLKKTGALDFAILSSD
Ga0099828_1021819923300009089Vadose Zone SoilMVPPIIQHALSEAALPRGFRFAATACGLKKTGALDFAILCSDVPA
Ga0066709_10035839713300009137Grasslands SoilMTQPPPESALPKGFRFAATACGLKKTGALDLALISSDVPA
Ga0116119_108393323300009629PeatlandMKLALSEAALPRGFRFSATACGLKKTGALDLALLS
Ga0116217_1012617213300009700Peatlands SoilMKYALSEAALPRGFRFSATACGLKKTGALDLALLSSD
Ga0126373_1021457033300010048Tropical Forest SoilMKHPPSEAALPHGFRFAATACGLKKTGALDLAIFSSDVPA
Ga0074044_1041725223300010343Bog Forest SoilLKHALSESSLPRGFRFAATACGLKKTGALDLAILSSEVPASA
Ga0126376_1090582323300010359Tropical Forest SoilMTPLESALPKGFRFAATACGLKKTGALDLALISSDAP
Ga0126378_1090658713300010361Tropical Forest SoilMNHAPSEAALPRGFRFAATACGLKKTGALDLALLSSDVP
Ga0126377_1311631013300010362Tropical Forest SoilMTQAPPESALPKGFRFAATACGLKKTGALDLALISSD
Ga0137383_1058952523300012199Vadose Zone SoilMKHALSEASLPRGFRFAATACGLKKTGALDLAVLSSDVTA
Ga0137363_1034263323300012202Vadose Zone SoilMKQALSEAALPRGFRFAAAACGLKKTGALDLAVFSS
Ga0137363_1117193013300012202Vadose Zone SoilMKHALSEAALPLGFRFSATACGLKKTGALDLALLSSDVPA
Ga0137360_1058336623300012361Vadose Zone SoilLIKHALSEASLPRGFRFGATACGLKKTGALDLAVISSDVTA
Ga0137360_1060818113300012361Vadose Zone SoilMKHALSEAALPLGFRFAATACGLKKTGALDLAVISSDVPASA
Ga0137361_1106429413300012362Vadose Zone SoilLIKHALSEASLPRGFRFAATACGLKKTGALDLAILSSDV
Ga0137398_1098173123300012683Vadose Zone SoilMRQSPSESALPREFRFAATACGLKKTGALDLALISSDVPAS
Ga0137359_1055929123300012923Vadose Zone SoilMKHALSEASLPRGFRFAATACGLKKTGALDLAILSS
Ga0137359_1173586513300012923Vadose Zone SoilMKHALSEASLPRGFRFAATACGLKKTGALDLAVLSSDVTASA
Ga0137405_124468613300015053Vadose Zone SoilMKHALSESSLPRGFRFAAIACGLKKTGALDLALLSSDL
Ga0137420_132460023300015054Vadose Zone SoilMKHALSEASLPRGFRFAATACGLKKTGALDLAVFSSDVT
Ga0182036_1090753213300016270SoilMNHAPSEAALPRGFRFAATACGLKKTGALDLALLSSD
Ga0187802_1027386813300017822Freshwater SedimentMNSVPTEAALPRGFRFAATACGLKKTGALDLALLSSD
Ga0066669_1140174213300018482Grasslands SoilMTQPPPESALPKGFRFAATACGLKKTGALDLALISS
Ga0182028_149856813300019788FenMKYALSEAALPRGFRFSATACGLKKTGALDLALLS
Ga0193729_127497613300019887SoilMKHALSEASLPHGFRFAATACGLKKTGALDLGLLCSDESAS
Ga0193728_135765923300019890SoilMKHALSEASLPHGFRFAATACGLKKTGALDLGLLCS
Ga0210407_1046552123300020579SoilMKHALSEAALPLGFRFSATACGLKKTGALDLALLSSDV
Ga0210407_1069560313300020579SoilMTPPAMQHALSEASLPRGFRFAATACGLKKTGALDFAI
Ga0210401_1004203253300020583SoilMKQALSEASLPRGFRFAGIACGLKKTGALDLAMISSD
Ga0210404_1023882613300021088SoilMKHALSEASLPRGFRFAATACGLKKTGALDLAILSSDVPASA
Ga0210388_1123356013300021181SoilVDMKHALSEAALPRGFRFAATACGLKKTGALDLAMFTSEVPASA
Ga0210393_1018735523300021401SoilLIKQALSEASLPRGFRFAGIACGLKKTGALDLAMISSDV
Ga0210385_1132654113300021402SoilMKHALSEASLPHGFRFAGLACGLKKTGALDLAIISSD
Ga0210387_1143938113300021405SoilMKHALSEASLPLGFRFAATACGLKKTGALDLALLSS
Ga0210384_1053172413300021432SoilMKHALSEASLPRGFRFAATACGLKKTGALDLAVISSDVQAS
Ga0210384_1181352623300021432SoilLIKHALSEASLPRGFRFAATACGLKKTGALDLAILSSDA
Ga0210402_1048565413300021478SoilMNHALSEASLPRGFRFSATACGLKKTGALDLALLSSD
Ga0126371_1353497123300021560Tropical Forest SoilMNHAPSEAALPRGFRFAATACGLKKTGALDLALLSSDVPA
Ga0247667_100914833300024290SoilVTQAPTEAALPKGFRFAATACGLKKTGALDLAILS
Ga0208036_104157223300025419PeatlandMKLALSEAALPRGFRFSATACGLKKTGALDLALLSSDV
Ga0207699_1021421623300025906Corn, Switchgrass And Miscanthus RhizosphereMKHALSEASLPRGFRFAAIACGLKKTGALDLAVISSDVSAS
Ga0207782_10419813300026835Tropical Forest SoilMNHAPSEAALPRGFRFAATACGLKKTGALDLALLSSDLPA
Ga0207815_100527923300027014Tropical Forest SoilVDTCIMNHAPSEAALPRGFRFAATACGLKKTGALD
Ga0208241_100430513300027297Forest SoilMKHALSEASLPRGFRFAATACGLKKTGALDLAIFSSD
Ga0207761_108548513300027516Tropical Forest SoilMMKHALTETALPRGFRFSATACGLKKTGALDLALLSSDVLASAAA
Ga0209735_102576323300027562Forest SoilMQHALSEAALPRGFRFAATACGLKKTGALDFAILSSDVL
Ga0209329_110662213300027605Forest SoilMQHALSEASLPRGFRFAATACGLKKTGALDLAILSSDVLASAAG
Ga0209076_108655023300027643Vadose Zone SoilMQHALSEASLPRGFRFAATACGLKKTGALDFAILSSD
Ga0209388_111035013300027655Vadose Zone SoilLIKHALSEASLPRGFRFAATACGLKKTGALDLAILSSDM
Ga0209118_108736813300027674Forest SoilMNHALSEASLPRGFRFSATACGLKKTGALDLALLSSDVPAS
Ga0209011_118912723300027678Forest SoilMQHALSEAALPRGFRFAATACGLKKTGALDLAILSSDAPAS
Ga0209446_109544913300027698Bog Forest SoilMNHALSEASLPLGFRFAATACGLKKTGALDLALLSSDVTAS
Ga0209112_1008045813300027817Forest SoilVDLMHALSEAALPRGFRFAATACGLKKTGALDLAMFTSEVPASA
Ga0209701_1031852113300027862Vadose Zone SoilMNHALSEASLPRGFRFSATACGLKKTGALDLALLSSDV
Ga0209275_1024600613300027884SoilMKHALSEAALPRGFRFAATACGLKKTGALDLAMFSS
Ga0209275_1038989613300027884SoilMKHALSEASLPRGFRFAATACGLKKTGALDLAIFSSEVP
Ga0209275_1092631123300027884SoilLIKQALSEASLPRGFRFAGIACGLKKTGALDLAMISSD
Ga0209415_1093289113300027905Peatlands SoilMKQAPSEAALPRGFRFAATACGLKKTGALDLALLSS
Ga0302231_1037821923300028775PalsaLKHALSESSLPRGFRFAATACGLKKTGALDLAILSSEFPASAAA
Ga0302223_1021822013300028781PalsaLKHALSESSLPRGFRFAATACGLKKTGALDLAILSS
Ga0302306_1025518813300030043PalsaLKHALSESSLPRGFRFAATACGLKKTGALDLAILSSEFPAS
Ga0073994_1006614113300030991SoilLIKHALSEASLPRGFRFAATACGLKKTGALDLAILSSD
Ga0170834_11058113813300031057Forest SoilMTQPPPESALPKGFRFAATACGLKKTGALDLALISSD
Ga0307477_1055028313300031753Hardwood Forest SoilMTPPSMQHALSEASLPRGFRFAATACGLKKTGALDFAILSSEVPA
Ga0318521_1093946123300031770SoilMNHAPSEAALPRGFRFAATACGLKKTGALDLALLSS
Ga0318546_1005584733300031771SoilMKQAPSEAALPRGFQFAATACGLKKTGALDLAILSS
Ga0307478_1019528013300031823Hardwood Forest SoilMTTAPPESALPKGFRFAATACGLKKTGALDLALISS
Ga0318520_1020756723300031897SoilMKQAPSEAALPRGFQFAATACGLKKTGALDLAILSSDVS
Ga0310916_1131189113300031942SoilMNHAPSEAALPRGFRFAATACGLKRTGALDLALLSSDVPACA
Ga0306926_1105551413300031954SoilMKPALSEAAVPRGFRFSATACGLKKTGALDLALLSSDVSASAAA
Ga0318510_1031949713300032064SoilMNHAPSEAALPRGFRFAATACGLKKTGALDLALLT
Ga0306924_1008464743300032076SoilMNHAPSEAALPRGFRFAATACGLKKTGALDLALLSSDL
Ga0307471_10169310613300032180Hardwood Forest SoilMQHALSEASLPRGFRFAATACGLKKTGALDFAILS
Ga0335079_1110873413300032783SoilMNSVPTEAALPRGFRFAATACGLKKTGALDLALLSSDVPA
Ga0370515_0258553_622_7383300034163Untreated Peat SoilMKHALSEAALPRGFRFAATACGLKKTGALDLAIFSSDVP

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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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