Metagenome / Metatranscriptome Family F101683

Basic Information
Family ID	F101683
Family Type	Metagenome / Metatranscriptome
Number of Sequences	102
Average Sequence Length	42 residues
Representative Sequence	RFIKVFPHEFKRVLGVSRCEQAYIPGEPVAVLANAEQVQHG
Number of Associated Samples	98
Number of Associated Scaffolds	102

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	1.96 %
% of genes near scaffold ends (potentially truncated)	98.04 %
% of genes from short scaffolds (< 2000 bps)	91.18 %
Associated GOLD sequencing projects	94
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.19

Most Common Taxonomy
Group	Unclassified (54.902 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (9.804 % of family members)
Environment Ontology (ENVO)	Unclassified (25.490 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (55.882 % of family members)

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 10.14% β-sheet: 0.00% Coil/Unstructured: 89.86%
Feature Viewer

Powered by Feature Viewer

Pfam ID	Name	% Frequency in 102 Family Scaffolds
PF14691	Fer4_20	92.16
PF04253	TFR_dimer	2.94
PF07992	Pyr_redox_2	0.98
PF00291	PALP	0.98
PF13620	CarboxypepD_reg	0.98
PF13559	DUF4129	0.98
PF14534	DUF4440	0.98

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.90 %
All Organisms	root	All Organisms	45.10 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.90 %
cellular organisms	root	All Organisms → cellular organisms	45.10 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.90 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	45.10 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.90 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	24.51 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	2.94 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1.96 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	1.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.90 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	18.63 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	3.92 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1.96 %
Bacteroidetes/Chlorobi group	clade	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group	1.96 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.98 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.90 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	17.65 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3.92 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1.96 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1.96 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	0.98 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.90 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	17.65 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3.92 %
Bacteroidia	class	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia	1.96 %
Corynebacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	1.96 %
Oxalobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae	0.98 %
Alphaproteobacteria bacterium ADurb.Bin100	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium ADurb.Bin100	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.90 %
Candidatus Koribacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	4.90 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3.92 %
unclassified Acidobacteriaceae	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae	2.94 %
Mycobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae	1.96 %
Bacteroidales	order	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	1.96 %
unclassified Oxalobacteraceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae → unclassified Oxalobacteraceae	0.98 %
Alphaproteobacteria bacterium ADurb.Bin100	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium ADurb.Bin100	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.90 %
Candidatus Koribacter versatilis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	3.92 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3.92 %
Acidobacteriaceae bacterium URHE0068	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium URHE0068	2.94 %
Mycobacterium	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium	1.96 %
Prevotellaceae	family	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae	1.96 %
Oxalobacteraceae bacterium IMCC9480	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae → unclassified Oxalobacteraceae → Oxalobacteraceae bacterium IMCC9480	0.98 %
Alphaproteobacteria bacterium ADurb.Bin100	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium ADurb.Bin100	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.90 %
Candidatus Koribacter versatilis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	3.92 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3.92 %
Acidobacteriaceae bacterium URHE0068	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium URHE0068	2.94 %
Prevotella	genus	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Prevotella	1.96 %
Mycobacterium tuberculosis complex	species group	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → Mycobacterium tuberculosis complex	1.96 %
Oxalobacteraceae bacterium IMCC9480	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae → unclassified Oxalobacteraceae → Oxalobacteraceae bacterium IMCC9480	0.98 %
Alphaproteobacteria bacterium ADurb.Bin100	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium ADurb.Bin100	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.90 %
Candidatus Koribacter versatilis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	3.92 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3.92 %
Acidobacteriaceae bacterium URHE0068	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium URHE0068	2.94 %
Mycobacterium tuberculosis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → Mycobacterium tuberculosis complex → Mycobacterium tuberculosis	1.96 %
environmental samples	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Prevotella → environmental samples	1.96 %
Oxalobacteraceae bacterium IMCC9480	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae → unclassified Oxalobacteraceae → Oxalobacteraceae bacterium IMCC9480	0.98 %
Alphaproteobacteria bacterium ADurb.Bin100	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium ADurb.Bin100	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.90 %
Candidatus Koribacter versatilis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	3.92 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3.92 %
Acidobacteriaceae bacterium URHE0068	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium URHE0068	2.94 %
Prevotella sp. CAG:487	species	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Prevotella → environmental samples → Prevotella sp. CAG:487	1.96 %
Mycobacterium tuberculosis str. Haarlem	strain	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → Mycobacterium tuberculosis complex → Mycobacterium tuberculosis → Mycobacterium tuberculosis str. Haarlem	1.96 %
Oxalobacteraceae bacterium IMCC9480	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae → unclassified Oxalobacteraceae → Oxalobacteraceae bacterium IMCC9480	0.98 %
Alphaproteobacteria bacterium ADurb.Bin100	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium ADurb.Bin100	0.98 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300002906\|JGI25614J43888_10215882	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	519	Open in IMG/M
3300002914\|JGI25617J43924_10126567	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	896	Open in IMG/M
3300004092\|Ga0062389_100074649	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2865	Open in IMG/M
3300004476\|Ga0068966_1355226	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	591	Open in IMG/M
3300004479\|Ga0062595_102271074	Not Available	534	Open in IMG/M
3300005540\|Ga0066697_10129034	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1486	Open in IMG/M
3300005541\|Ga0070733_10851099	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	612	Open in IMG/M
3300005575\|Ga0066702_10595113	All Organisms → cellular organisms → Bacteria	665	Open in IMG/M
3300005764\|Ga0066903_102895374	Not Available	931	Open in IMG/M
3300005921\|Ga0070766_10842744	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	626	Open in IMG/M
3300005995\|Ga0066790_10049200	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1825	Open in IMG/M
3300006086\|Ga0075019_10457141	Not Available	787	Open in IMG/M
3300006174\|Ga0075014_100342232	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium URHE0068	800	Open in IMG/M
3300006903\|Ga0075426_11075280	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	609	Open in IMG/M
3300006914\|Ga0075436_101314818	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium URHE0068	547	Open in IMG/M
3300009520\|Ga0116214_1124071	Not Available	955	Open in IMG/M
3300009521\|Ga0116222_1251069	Not Available	763	Open in IMG/M
3300009522\|Ga0116218_1455378	All Organisms → cellular organisms → Bacteria	570	Open in IMG/M
3300009627\|Ga0116109_1081536	Not Available	663	Open in IMG/M
3300009672\|Ga0116215_1052488	All Organisms → cellular organisms → Bacteria	1848	Open in IMG/M
3300009698\|Ga0116216_10035344	Not Available	3100	Open in IMG/M
3300010043\|Ga0126380_11787981	All Organisms → cellular organisms → Bacteria	555	Open in IMG/M
3300010359\|Ga0126376_10397042	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae → unclassified Oxalobacteraceae → Oxalobacteraceae bacterium IMCC9480	1241	Open in IMG/M
3300010361\|Ga0126378_13398790	Not Available	505	Open in IMG/M
3300010366\|Ga0126379_10680391	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1121	Open in IMG/M
3300010376\|Ga0126381_100576496	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → Mycobacterium tuberculosis complex → Mycobacterium tuberculosis → Mycobacterium tuberculosis str. Haarlem	1598	Open in IMG/M
3300011120\|Ga0150983_13688496	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium URHE0068	649	Open in IMG/M
3300012202\|Ga0137363_11166181	Not Available	655	Open in IMG/M
3300012203\|Ga0137399_11274106	All Organisms → cellular organisms → Bacteria	618	Open in IMG/M
3300012353\|Ga0137367_10898406	Not Available	610	Open in IMG/M
3300012927\|Ga0137416_10994964	Not Available	749	Open in IMG/M
3300012927\|Ga0137416_11237746	Not Available	673	Open in IMG/M
3300012988\|Ga0164306_11220450	Not Available	631	Open in IMG/M
3300014165\|Ga0181523_10152583	All Organisms → cellular organisms → Bacteria	1358	Open in IMG/M
3300014838\|Ga0182030_10089667	All Organisms → cellular organisms → Bacteria → Acidobacteria	4351	Open in IMG/M
3300016702\|Ga0181511_1475933	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	1873	Open in IMG/M
3300017822\|Ga0187802_10102563	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Prevotella → environmental samples → Prevotella sp. CAG:487	1077	Open in IMG/M
3300017943\|Ga0187819_10561806	All Organisms → cellular organisms → Bacteria	648	Open in IMG/M
3300017948\|Ga0187847_10757284	Not Available	548	Open in IMG/M
3300017966\|Ga0187776_10733698	Not Available	702	Open in IMG/M
3300017972\|Ga0187781_10350748	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium ADurb.Bin100	1050	Open in IMG/M
3300017972\|Ga0187781_11392908	All Organisms → cellular organisms → Bacteria	518	Open in IMG/M
3300017999\|Ga0187767_10284081	All Organisms → cellular organisms → Bacteria	558	Open in IMG/M
3300018013\|Ga0187873_1291271	Not Available	600	Open in IMG/M
3300018033\|Ga0187867_10400714	Not Available	760	Open in IMG/M
3300018046\|Ga0187851_10268352	Not Available	996	Open in IMG/M
3300018057\|Ga0187858_10372442	Not Available	892	Open in IMG/M
3300019268\|Ga0181514_1087489	Not Available	855	Open in IMG/M
3300019785\|Ga0182022_1035625	Not Available	712	Open in IMG/M
3300020582\|Ga0210395_10234897	Not Available	1377	Open in IMG/M
3300020583\|Ga0210401_10163479	All Organisms → cellular organisms → Bacteria → Acidobacteria	2078	Open in IMG/M
3300021088\|Ga0210404_10425843	Not Available	744	Open in IMG/M
3300021171\|Ga0210405_10758707	Not Available	746	Open in IMG/M
3300021406\|Ga0210386_11122091	Not Available	667	Open in IMG/M
3300021433\|Ga0210391_11047514	Not Available	634	Open in IMG/M
3300021475\|Ga0210392_10820044	Not Available	695	Open in IMG/M
3300021560\|Ga0126371_12278089	Not Available	654	Open in IMG/M
3300022532\|Ga0242655_10013339	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1630	Open in IMG/M
3300022850\|Ga0224552_1011260	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1221	Open in IMG/M
3300025480\|Ga0208688_1070176	Not Available	714	Open in IMG/M
3300025915\|Ga0207693_11291203	Not Available	546	Open in IMG/M
3300025928\|Ga0207700_10980641	Not Available	756	Open in IMG/M
3300025937\|Ga0207669_10357261	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1131	Open in IMG/M
3300026142\|Ga0207698_10890466	Not Available	897	Open in IMG/M
3300026309\|Ga0209055_1030478	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	2472	Open in IMG/M
3300026319\|Ga0209647_1325552	Not Available	519	Open in IMG/M
3300027505\|Ga0209218_1040909	Not Available	921	Open in IMG/M
3300027537\|Ga0209419_1123840	Not Available	516	Open in IMG/M
3300027645\|Ga0209117_1090997	Not Available	843	Open in IMG/M
3300027662\|Ga0208565_1216027	All Organisms → cellular organisms → Bacteria	541	Open in IMG/M
3300027795\|Ga0209139_10068913	Not Available	1241	Open in IMG/M
3300027829\|Ga0209773_10367746	All Organisms → cellular organisms → Bacteria	598	Open in IMG/M
3300027846\|Ga0209180_10756782	Not Available	523	Open in IMG/M
3300027853\|Ga0209274_10541771	All Organisms → cellular organisms → Bacteria	603	Open in IMG/M
3300027854\|Ga0209517_10144650	Not Available	1529	Open in IMG/M
3300027903\|Ga0209488_10239026	Not Available	1363	Open in IMG/M
3300027908\|Ga0209006_10017185	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	6555	Open in IMG/M
3300027986\|Ga0209168_10001879	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	15831	Open in IMG/M
3300028800\|Ga0265338_10835342	Not Available	630	Open in IMG/M
3300028873\|Ga0302197_10294262	Not Available	733	Open in IMG/M
3300028906\|Ga0308309_10275137	Not Available	1417	Open in IMG/M
3300029636\|Ga0222749_10466619	Not Available	678	Open in IMG/M
3300030339\|Ga0311360_10541701	All Organisms → cellular organisms → Bacteria → Proteobacteria	932	Open in IMG/M
3300030509\|Ga0302183_10297594	Not Available	624	Open in IMG/M
3300030520\|Ga0311372_11679110	Not Available	767	Open in IMG/M
3300031057\|Ga0170834_106579354	Not Available	579	Open in IMG/M
3300031231\|Ga0170824_109218071	Not Available	1032	Open in IMG/M
3300031446\|Ga0170820_12953596	Not Available	631	Open in IMG/M
3300031446\|Ga0170820_16168912	Not Available	512	Open in IMG/M
3300031524\|Ga0302320_10719023	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1128	Open in IMG/M
3300031708\|Ga0310686_108106801	Not Available	1344	Open in IMG/M
3300031711\|Ga0265314_10242677	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Prevotellaceae → Prevotella → environmental samples → Prevotella sp. CAG:487	1038	Open in IMG/M
3300031753\|Ga0307477_11157163	Not Available	503	Open in IMG/M
3300031754\|Ga0307475_10101767	All Organisms → cellular organisms → Bacteria	2244	Open in IMG/M
3300031788\|Ga0302319_11374672	Not Available	638	Open in IMG/M
3300032059\|Ga0318533_11186762	Not Available	559	Open in IMG/M
3300032160\|Ga0311301_11036533	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → Mycobacterium tuberculosis complex → Mycobacterium tuberculosis → Mycobacterium tuberculosis str. Haarlem	1078	Open in IMG/M
3300032160\|Ga0311301_12385354	Not Available	598	Open in IMG/M
3300032180\|Ga0307471_104265287	Not Available	505	Open in IMG/M
3300033002\|Ga0346503_1043432	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2381	Open in IMG/M
3300033158\|Ga0335077_10299910	All Organisms → cellular organisms → Bacteria	1759	Open in IMG/M
3300033433\|Ga0326726_10199115	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	1848	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	94.12%
Host-Associated	Host-Associated	5.88%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	77.45%
Aquatic	Environmental → Aquatic	16.67%
Plants	Host-Associated → Plants	5.88%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	69.61%
Freshwater	Environmental → Aquatic → Freshwater	14.71%
Peat	Environmental → Terrestrial → Peat	7.84%
Rhizosphere	Host-Associated → Plants → Rhizosphere	4.90%
Sediment	Environmental → Aquatic → Sediment	1.96%
Rhizoplane	Host-Associated → Plants → Rhizoplane	0.98%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	50.98%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	14.71%
Loam	Environmental → Terrestrial → Soil → Loam	10.78%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	7.84%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	7.84%
Soil	Host-Associated → Plants → Rhizosphere → Soil	2.94%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.96%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	1.96%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.98%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	26.47%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	16.67%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	10.78%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	8.82%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	7.84%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	5.88%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	4.90%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	2.94%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	2.94%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	1.96%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	1.96%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.96%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	1.96%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	1.96%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.98%
Contaminated	Environmental → Terrestrial → Soil → Unclassified → Contaminated	0.98%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.98%

Habitat	Taxonomy	Distribution
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	9.80%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	9.80%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	6.86%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	6.86%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	5.88%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	4.90%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	3.92%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	3.92%
Bog	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog	3.92%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	2.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	2.94%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	2.94%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	2.94%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	2.94%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	1.96%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	1.96%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	1.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.96%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	1.96%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.96%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	1.96%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	1.96%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	1.96%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	0.98%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.98%
Soil	Environmental → Terrestrial → Soil → Unclassified → Contaminated → Soil	0.98%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.98%
Fen	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Fen	0.98%
Bog	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog	0.98%
Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Soil	0.98%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.98%
Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil	0.98%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	0.98%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.98%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.98%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300002906	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_60cm	Environmental	Open in IMG/M
3300002914	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm	Environmental	Open in IMG/M
3300004092	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300004476	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 58 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300005540	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_146	Environmental	Open in IMG/M
3300005541	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1	Environmental	Open in IMG/M
3300005575	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_151	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005921	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6	Environmental	Open in IMG/M
3300005995	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 3 DNA2013-050	Environmental	Open in IMG/M
3300006086	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2013	Environmental	Open in IMG/M
3300006174	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2014	Environmental	Open in IMG/M
3300006903	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD5	Host-Associated	Open in IMG/M
3300006914	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5	Host-Associated	Open in IMG/M
3300009520	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_1_NS metaG	Environmental	Open in IMG/M
3300009521	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_9_AC metaG	Environmental	Open in IMG/M
3300009522	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_5_LS metaG	Environmental	Open in IMG/M
3300009627	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_8_10	Environmental	Open in IMG/M
3300009672	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_2_FS metaG	Environmental	Open in IMG/M
3300009698	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_3_AS metaG	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012353	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_80_16 metaG	Environmental	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012988	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_242_MG	Environmental	Open in IMG/M
3300014165	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_30_metaG	Environmental	Open in IMG/M
3300014838	Permafrost microbial communities from Stordalen Mire, Sweden - 812S3M metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300016702	Metatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_30_metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300017822	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_2	Environmental	Open in IMG/M
3300017943	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_4	Environmental	Open in IMG/M
3300017948	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_10	Environmental	Open in IMG/M
3300017966	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP12_20_MG	Environmental	Open in IMG/M
3300017972	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300017999	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP10_10_MG	Environmental	Open in IMG/M
3300018013	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_100	Environmental	Open in IMG/M
3300018033	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_13_10	Environmental	Open in IMG/M
3300018046	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_6_10	Environmental	Open in IMG/M
3300018057	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_150	Environmental	Open in IMG/M
3300019268	Metatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_10_metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019785	Permafrost microbial communities from Stordalen Mire, Sweden - 612E3M metaG (PacBio error correction)	Environmental	Open in IMG/M
3300020582	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021088	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021406	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O	Environmental	Open in IMG/M
3300021433	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-O	Environmental	Open in IMG/M
3300021475	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-O	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300022532	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-4-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022850	Peat soil microbial communities from Stordalen Mire, Sweden - 717 S2 1-5	Environmental	Open in IMG/M
3300025480	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_6_150 (SPAdes)	Environmental	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025937	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026142	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026309	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110 (SPAdes)	Environmental	Open in IMG/M
3300026319	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_60cm (SPAdes)	Environmental	Open in IMG/M
3300027505	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_O3 (SPAdes)	Environmental	Open in IMG/M
3300027537	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_M3 (SPAdes)	Environmental	Open in IMG/M
3300027645	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2 (SPAdes)	Environmental	Open in IMG/M
3300027662	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_2_FS metaG (SPAdes)	Environmental	Open in IMG/M
3300027795	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM3 (SPAdes)	Environmental	Open in IMG/M
3300027829	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM1 (SPAdes)	Environmental	Open in IMG/M
3300027846	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027853	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1 (SPAdes)	Environmental	Open in IMG/M
3300027854	Peat soil microbial communities from Weissenstadt, Germany - SII-2010 (SPAdes)	Environmental	Open in IMG/M
3300027903	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)	Environmental	Open in IMG/M
3300027908	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 (SPAdes)	Environmental	Open in IMG/M
3300027986	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen07_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300028800	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG	Host-Associated	Open in IMG/M
3300028873	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_N2_1	Environmental	Open in IMG/M
3300028906	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)	Environmental	Open in IMG/M
3300029636	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030339	III_Bog_N1 coassembly	Environmental	Open in IMG/M
3300030509	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_N3_2	Environmental	Open in IMG/M
3300030520	III_Palsa_N2 coassembly	Environmental	Open in IMG/M
3300031057	Oak Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031446	Fir Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031524	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Bog_T0_3	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031711	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG	Host-Associated	Open in IMG/M
3300031753	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515	Environmental	Open in IMG/M
3300031754	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515	Environmental	Open in IMG/M
3300031788	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Bog_T0_2	Environmental	Open in IMG/M
3300032059	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27	Environmental	Open in IMG/M
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300033002	Soil microbial community from agricultural field in Dibrughar, Assam, India - D1	Environmental	Open in IMG/M
3300033158	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.1	Environmental	Open in IMG/M
3300033433	Lab enriched peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF15MN	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.19
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.19
Powered by PDBe Molstar

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F101683

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI25614J43888_102158821	3300002906	Grasslands Soil	RFIKVFPHEYKRVQGVTRTQQPYVPGQLLPVEAAVGQVQHG*
JGI25617J43924_101265671	3300002914	Grasslands Soil	EALSRFIKVFPHEHKRVLGVSRRRQPYIPSLPMAVLSTPQEVQHG*
Ga0062389_1000746493	3300004092	Bog Forest Soil	FVKVFPHEFKRVLGVSRSQRAYIPKQPVSVLAPIEPVQQVQHG*
Ga0068966_13552261	3300004476	Peatlands Soil	VASRFIKVFPHEFKRVLGVVRSRHAYIPGQSVSVLAHAEQVQHG*
Ga0062595_1022710742	3300004479	Soil	RFIKVFPHEFKRVLGVSRSDEAYIPGEAVSILDDAEQVQHG*
Ga0066697_101290341	3300005540	Soil	EMLPRFIKVFPHEFKRVLGVPRSTQAYIPGETMAVLEEAEQVQHG*
Ga0070733_108510991	3300005541	Surface Soil	FIKVFPHEFKRVLGVSRSQQAYIPGEQAAVLANAEQVQHG*
Ga0066702_105951132	3300005575	Soil	FPHEFKRVLGVSRSEQAYIPGEAVAVLADAEQVQHG*
Ga0066903_1028953741	3300005764	Tropical Forest Soil	VFPHEYKRVLGVARAEQAYIPGQSVPVLVNAEQVQHG*
Ga0070766_108427441	3300005921	Soil	VFPHEFKRVLGVARAEQAYIPGESLAVLANAEQVQHG*
Ga0066790_100492001	3300005995	Soil	SRFIKVFPHEHKRVLGVSRRRQPYIPSPQLAVTAQAEQVHHG*
Ga0075019_104571412	3300006086	Watersheds	FPHEHKRVLGVSRRRQPYVPNPAFAATLTGPQVQHG*
Ga0075014_1003422321	3300006174	Watersheds	VFPHEFKRVLGVVRSQQACTPAQPVAVLEPVEQVQHG*
Ga0075426_110752801	3300006903	Populus Rhizosphere	RFIKVFPHEFKRVLGVSRSHEAYIPGEPVSILENAEQVQHG*
Ga0075436_1013148182	3300006914	Populus Rhizosphere	FMKVFPHEFKRVLGIPRVGHAYVPGQVPMLLIAEQVQHG*
Ga0116214_11240712	3300009520	Peatlands Soil	MLSRFIKVFPPEFKGVLGAPSSEQVYSPNDPVAVVADAEQLQPEQVQHG*
Ga0116222_12510691	3300009521	Peatlands Soil	IKVFPHEFKRVLGVARSEQAYIPNQPVAVLAEPEPMQEQVQHG*
Ga0116218_14553782	3300009522	Peatlands Soil	VFPHEHKRVLGVSRRRQPYIPSPPLAVLSPPEQVQHG*
Ga0116109_10815362	3300009627	Peatland	LARFIKVFPHEHKRVLGMTRRRQPYIPGAALAVAAQSEQVSHG*
Ga0116215_10524883	3300009672	Peatlands Soil	VFPHEHKRVLGVSRRRQPYIPSPPPAEPAPAEQVQHG*
Ga0116216_100353441	3300009698	Peatlands Soil	PHEFKRVLGVARSEQAYIPNQPVAVLAEPEPMQEQVQHG*
Ga0126380_117879812	3300010043	Tropical Forest Soil	PRFIKVFPHEFKRVLGVSRSEQTYIPVESVSVLAVEQVQHG*
Ga0126376_103970422	3300010359	Tropical Forest Soil	EASLRFIKVFPHEFKRVLGVSRCAHAHIPGESLAVLASAEQVQHG*
Ga0126378_133987902	3300010361	Tropical Forest Soil	FPHEYKRVLGVARAEQAYIPSDAVALSVNAEQVQHG*
Ga0126379_106803912	3300010366	Tropical Forest Soil	PHEYKRVLGVARAEQAYIPGQSVPVLVNAEQVQHG*
Ga0126381_1005764961	3300010376	Tropical Forest Soil	ASLRFIKVFPHEYKRVLGVARAEQPYIPSDAVALSVNAEQVQHG*
Ga0150983_136884962	3300011120	Forest Soil	WNEAVSRFIKVFPHEFKRVLGIARAEQAYIPGEPLAVLANAEQVQHG*
Ga0137363_111661811	3300012202	Vadose Zone Soil	MLPRFIKVFPHEFKRVLGVSRTQQPYIPGPNLPVIAVPEQVQHG*
Ga0137399_112741062	3300012203	Vadose Zone Soil	FPHEFKRVLGVSRTPQPYLPGPNLPAGVAPEQVQHG*
Ga0137367_108984061	3300012353	Vadose Zone Soil	VFPHEFKRVLGVTRSEQAYVPGEAGAASLHPEQVQHG*
Ga0137416_109949641	3300012927	Vadose Zone Soil	KVFPHEHKRVLGVGRRRQPYIPSPALTAVAQAAQVQHG*
Ga0137416_112377462	3300012927	Vadose Zone Soil	WLALLPRFIKVYPHEFKRVQGVTRTQQPYIPGQLLPVEAAAGQVQHG*
Ga0164306_112204501	3300012988	Soil	SWFIKVFPHEFKRVLGVRRSEHAYIPSQSDAILAHAEPGQSEQVQHG*
Ga0181523_101525831	3300014165	Bog	SLSRFIKVFPHEHKRVLGVSRRRQPYIPSPPLAVLSSPEQVQHG*
Ga0182030_100896674	3300014838	Bog	NNWTEALARFIKVFPHEHKRVLGMTRRQQPYIPGAALAVAAQSEQVSHG*
Ga0181511_14759333	3300016702	Peatland	FIKVFPHEHKRVLGVSRRRQPYIPSPPADVLVSAEQVQHG
Ga0187802_101025632	3300017822	Freshwater Sediment	VFPHEFKRVLGVLRSQQAYTPGQAVAVLEPVEQVQHG
Ga0187819_105618062	3300017943	Freshwater Sediment	RFIKVFPHELKRVLGVSRTHQAYVPGQSLPAMPAAEQVQHG
Ga0187847_107572842	3300017948	Peatland	RFIKVFPHEFKRVLGVARASQAYIPNQPVAVLAEADHAQHEHVQHGQVIHG
Ga0187776_107336981	3300017966	Tropical Peatland	KVFPHEYKRILGVPRVDQAYIPSETIAVLANAEQMQHG
Ga0187781_103507482	3300017972	Tropical Peatland	FPHEYKRVLGVKRCPQPYIPSLPLALFAPAEQVQRG
Ga0187781_113929082	3300017972	Tropical Peatland	RFIKVFPHEFKRVLGVSRCEQAYIPGEPVAVLANAEQVQHG
Ga0187767_102840812	3300017999	Tropical Peatland	KVFPHEYKRVLGVSRLRKPYIAGQPFPPTVELAEQVQHG
Ga0187873_12912711	3300018013	Peatland	FKRVLGVGRSEQAYIPSQAVSVLADREQMQHEQVQHG
Ga0187867_104007141	3300018033	Peatland	LDNWSEALSRFIKVFPHEHKRVLGVGRRRQPYIPSPPLAVLSSPEQVQHG
Ga0187851_102683521	3300018046	Peatland	EMLSRFIKVFPHEHKRVLGLRRRRPPYNPSPPLAVPVPAEQVRHG
Ga0187858_103724422	3300018057	Peatland	KVFPHEFKRVLGVGRSEQAYIPSQAVSVLADREQMQHEQVQHG
Ga0181514_10874891	3300019268	Peatland	YEVLPRFIKIFPHEFKRVSGVSRSDQPYIPGSSEQAVVSGEQVQHG
Ga0182022_10356251	3300019785	Fen	RFIKVFPHEFKRVLRVSRTRQPYIPGQSLPVMAVAEQVRHG
Ga0210395_102348971	3300020582	Soil	IKVFPHEFKRVLGIGRRPQAYMPSEPVAVLAHAEQAQNEQVQHG
Ga0210401_101634793	3300020583	Soil	SRFIKVFPHEHKRVLGVSLRRQPYIPTPALTAVAQAQQVQHG
Ga0210404_104258431	3300021088	Soil	IKVFPHEYKRVQGVTRAQQPYIPGQLLSVEAGVGQVRHG
Ga0210405_107587072	3300021171	Soil	FPHEFKRVLGVARSEHAYIPSQPVAILADAEQAQQEQLQHGQVLHG
Ga0210386_111220912	3300021406	Soil	KVFPHEFKRVLGVARSEQAYIPNQPVSILAKAEPMQQEQVQHG
Ga0210391_110475142	3300021433	Soil	LPRFIKVFPHEFKRVLGVSRNRAPYIPIAPIAVLAAAEQVQHG
Ga0210392_108200441	3300021475	Soil	ASRFIKVFPHEFKRVLGVNRREQAYIPASAVAVLAQSESLQPEQVQLG
Ga0126371_122780892	3300021560	Tropical Forest Soil	SRFIKVFPHEYKRVLGVPRHEQAYVPEPVMAQAEQVQHG
Ga0242655_100133392	3300022532	Soil	FIKVFPHEFKRVLGIARAEQAYIPGEPLAVLANAEQVQHG
Ga0224552_10112601	3300022850	Soil	SETLSRFIKVFPHEHKRVLGVRRRRPPYNPSPLLAVPAPAEQVHHG
Ga0208688_10701761	3300025480	Peatland	FIKVFPHEHKRVLGVSRRRQPYIPSPLIAAMAPPEQVQHG
Ga0207693_112912032	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	VFPHEFKRVLGVSRSRHAYIPGEAVAVLADAEQVQHG
Ga0207700_109806412	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	IKVFPHEHKRVLGVSRRRTPYIPSLPVNVLVPLEQMQHG
Ga0207669_103572611	3300025937	Miscanthus Rhizosphere	KVFPHEFKRVLGVSRSQQPYVPGAPLPVPVAVEEQVHHG
Ga0207698_108904662	3300026142	Corn Rhizosphere	MRFIKVFPHEFKRVLGVSRSQQPYVPGAPLPVPVAVEEQVHHG
Ga0209055_10304781	3300026309	Soil	NEAVSRFIKVFPHEFKRVLGIARAEQAYIPGEPLAVLANAEQVQHG
Ga0209647_13255522	3300026319	Grasslands Soil	RFIKVFPHEYKRVQGVTRTQQPYVPGQLLPVEAAVGQVQHG
Ga0209218_10409092	3300027505	Forest Soil	PHEFKRVLGVGRNQQAYIPSHPVSVLAQVEQVQNG
Ga0209419_11238401	3300027537	Forest Soil	EFKRVLGVGRSERAYIPSRPVPVLVSTEPMHPEQVQHG
Ga0209117_10909972	3300027645	Forest Soil	IKVFPHEFKRVLGVGRSERAYIPSRPVPVLVSNEQMQPEQVQHG
Ga0208565_12160271	3300027662	Peatlands Soil	SRFIKVFPHEFKRVLGLNRSPQPYIPNQPLPVLAQVEQVQHG
Ga0209139_100689131	3300027795	Bog Forest Soil	FPHEHKRVLGVTRSRQPYIPSAPLVASENITDTPAQVQHG
Ga0209773_103677461	3300027829	Bog Forest Soil	SRFIKVFPHEHKRVLGVNRSRQPYIPSPPLAALVPAEQVQHG
Ga0209180_107567822	3300027846	Vadose Zone Soil	FIKVFPHEYKRVRGVTRTQQPYIPGQLLSVEAGAEQVRHG
Ga0209274_105417712	3300027853	Soil	KVFPHEHKRVLGVSRRRQPYIPSAPLDTLVQAEQVQHG
Ga0209517_101446501	3300027854	Peatlands Soil	KVFPHEFKRVLGVARSEQAYIPNQPVAVLAEPEPMQEQVQHG
Ga0209488_102390262	3300027903	Vadose Zone Soil	FPHEFKRVLGVSRTTQPYLPGPNLPVVAAAEQVQHG
Ga0209006_100171851	3300027908	Forest Soil	FIKVFPHEFKRVLGVSRNRAPYIPLEPVAVLAGTEQVQNG
Ga0209168_1000187915	3300027986	Surface Soil	FIKVFPHEFKRVLGVTRSEHAYIPSESLTALAAAEQVQHG
Ga0265338_108353421	3300028800	Rhizosphere	WHEVNTRFIKVFPHEFKRVLGVTRSENAYIPGEPVGAMAQGEQVQHG
Ga0302197_102942621	3300028873	Bog	TEALARFIKVFPHEHKRVLGMTRRQQPYIPGAALAVAAQSEQVSHG
Ga0308309_102751372	3300028906	Soil	GEVLPRFIKVFPHEFKRVLGVSRNRAPYIPIAPIAVLAAAEQVQHG
Ga0222749_104666191	3300029636	Soil	NWPEALSRFIKVFPHEHKRVLGVSRRRQPYIPSPALTAVAQAQQVQHG
Ga0311360_105417011	3300030339	Bog	IKVFPREFKRVLGVSRSTQAYIPGQSLPSLAVEQVHHG
Ga0302183_102975941	3300030509	Palsa	IKVFPHEHKRVLGVSRRRQPYIPAPPPAVLAAEQVQHG
Ga0311372_116791102	3300030520	Palsa	RFIKVFPHEFKRVLGVSRNRAPYIPVDPIAVLAGAEQVQHG
Ga0170834_1065793542	3300031057	Forest Soil	SRFIKVFPHEFKRVLGVRRSEQAYIPSQSDAILAHADQGQSEQVQHG
Ga0170824_1092180711	3300031231	Forest Soil	HEFKRVLGVGRSQQAYIPSQPVSLLEPAEPLQHAQVQHG
Ga0170820_129535962	3300031446	Forest Soil	SEAASRFIKVFPHEYKRVLGVGRRQQAYIPKPPVVVLAHAEPVPQQVQHG
Ga0170820_161689121	3300031446	Forest Soil	MSRFIKVFPHEFKRVLGVGRSQQAYIPSQPVSLLEPAEPLQHAQVQHG
Ga0302320_107190231	3300031524	Bog	LNNWKEALARFIKIFPHEHKRVLGMTRRRQPYIPSAVLAAAAQSEQVSHG
Ga0310686_1081068012	3300031708	Soil	EALSRFIKVFPHEHKRVLGVSRRRQPYIPSAPLDTLVQAEQVQHG
Ga0265314_102426771	3300031711	Rhizosphere	IKVFPHEHKRVLGVSRRRQPYIPSLPMAVLSPSQQVQHG
Ga0307477_111571632	3300031753	Hardwood Forest Soil	IKVFPHEFKRVLGIARVEQAYIPGEPLAVLANAEQVQHG
Ga0307475_101017673	3300031754	Hardwood Forest Soil	ARFIKIFPHEFKRVLGVSRSRQPYIPGQPVAVPELVEQVQHG
Ga0302319_113746722	3300031788	Bog	PHEHKRVLGMTRRRQPYIPSAVLAAAAQSEQVSHG
Ga0318533_111867621	3300032059	Soil	NRNEALVRFIKVFPHEYKRVLGVPRVEQAYIRGESVAVLANAEQVQHG
Ga0311301_110365331	3300032160	Peatlands Soil	IKVFPHEHKRVLGVNRRHQHYIPSPSAVAMAPAEQVQHG
Ga0311301_123853542	3300032160	Peatlands Soil	EMLSRFIKVFPHEFKRVLGAARSEQAYIPNQPAAVLAEAEQLQPEQVQHG
Ga0307471_1042652871	3300032180	Hardwood Forest Soil	FPHEFKRVLGVGRSLQAYIPSQPVSLLEPAEPLLHAQVQHG
Ga0346503_10434321	3300033002	Soil	IKVFPHEYKRVLGVERAAEAYIPAAAVRSLMPIEQVQHG
Ga0335077_102999103	3300033158	Soil	VSRFIKVFPHEFKRVLGVSRSERAHVPGDSVAVLAAAEQVQHG
Ga0326726_101991153	3300033433	Peat Soil	SELLPRFIKVFPHEYKRVLGVGRTAQPKIPEQVPLAVLAEQVQHG

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign