Metagenome / Metatranscriptome Family F101679

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F101679
Family Type	Metagenome / Metatranscriptome
Number of Sequences	102
Average Sequence Length	68 residues
Representative Sequence	MHPELLRALGKARHEDLLNERRTRGQPRVRLDDHSPRFPRSRQRVGSLLIWAGARLIGDQRAALELAHK
Number of Associated Samples	75
Number of Associated Scaffolds	102

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	94.06 %
% of genes near scaffold ends (potentially truncated)	19.61 %
% of genes from short scaffolds (< 2000 bps)	79.41 %
Associated GOLD sequencing projects	68
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.29

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (50.980 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil (20.588 % of family members)
Environment Ontology (ENVO)	Unclassified (25.490 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (58.824 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 49.48% β-sheet: 0.00% Coil/Unstructured: 50.52%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.29
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.29
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 102 Family Scaffolds
PF00106	adh_short	4.90
PF11975	Glyco_hydro_4C	2.94
PF00581	Rhodanese	1.96
PF03551	PadR	1.96
PF04978	DUF664	1.96
PF00768	Peptidase_S11	1.96
PF08031	BBE	0.98
PF03458	Gly_transporter	0.98
PF13631	Cytochrom_B_N_2	0.98
PF09534	Trp_oprn_chp	0.98
PF03631	Virul_fac_BrkB	0.98
PF00990	GGDEF	0.98
PF13649	Methyltransf_25	0.98
PF11716	MDMPI_N	0.98
PF07311	Dodecin	0.98
PF01527	HTH_Tnp_1	0.98
PF01370	Epimerase	0.98
PF01583	APS_kinase	0.98
PF03793	PASTA	0.98
PF00563	EAL	0.98
PF00005	ABC_tran	0.98
PF02720	DUF222	0.98
PF01138	RNase_PH	0.98
PF00440	TetR_N	0.98
PF00365	PFK	0.98
PF00583	Acetyltransf_1	0.98
PF12802	MarR_2	0.98
PF00960	Neocarzinostat	0.98
PF03816	LytR_cpsA_psr	0.98
PF00196	GerE	0.98
PF13561	adh_short_C2	0.98
PF13191	AAA_16	0.98

COG ID	Name	Functional Category	% Frequency in 102 Family Scaffolds
COG1686	D-alanyl-D-alanine carboxypeptidase	Cell wall/membrane/envelope biogenesis [M]	1.96
COG1695	DNA-binding transcriptional regulator, PadR family	Transcription [K]	1.96
COG1733	DNA-binding transcriptional regulator, HxlR family	Transcription [K]	1.96
COG1846	DNA-binding transcriptional regulator, MarR family	Transcription [K]	1.96
COG5001	Cyclic di-GMP metabolism protein, combines GGDEF and EAL domains with a 6TM membrane domain	Signal transduction mechanisms [T]	0.98
COG0205	6-phosphofructokinase	Carbohydrate transport and metabolism [G]	0.98
COG4943	Redox-sensing c-di-GMP phosphodiesterase, contains CSS-motif and EAL domains	Signal transduction mechanisms [T]	0.98
COG3434	c-di-GMP phosphodiesterase YuxH/PdeH, contains EAL and HDOD domains	Signal transduction mechanisms [T]	0.98
COG3360	Flavin-binding protein dodecin	General function prediction only [R]	0.98
COG2860	Uncharacterized membrane protein YeiH	Function unknown [S]	0.98
COG2200	EAL domain, c-di-GMP-specific phosphodiesterase class I (or its enzymatically inactive variant)	Signal transduction mechanisms [T]	0.98
COG2123	Exosome complex RNA-binding protein Rrp42, RNase PH superfamily	Intracellular trafficking, secretion, and vesicular transport [U]	0.98
COG1316	Anionic cell wall polymer biosynthesis enzyme TagV/TagU, LytR-Cps2A-Psr (LCP) family (peptidoglycan teichoic acid transferase)	Cell wall/membrane/envelope biogenesis [M]	0.98
COG1295	Uncharacterized membrane protein, BrkB/YihY/UPF0761 family (not an RNase)	Function unknown [S]	0.98
COG1185	Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase)	Translation, ribosomal structure and biogenesis [J]	0.98
COG0689	Ribonuclease PH	Translation, ribosomal structure and biogenesis [J]	0.98
COG0529	Adenylylsulfate kinase or related kinase	Inorganic ion transport and metabolism [P]	0.98
COG0277	FAD/FMN-containing lactate dehydrogenase/glycolate oxidase	Energy production and conversion [C]	0.98

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.98 %
All Organisms	root	All Organisms	49.02 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.98 %
cellular organisms	root	All Organisms → cellular organisms	49.02 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.98 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	49.02 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.98 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	33.33 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.98 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	28.43 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.98 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	15.69 %
Acidimicrobiia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia	1.96 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.98 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	4.90 %
Streptosporangiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	2.94 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	2.94 %
Acidimicrobiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales	1.96 %
Corynebacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	1.96 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.98 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	4.90 %
Treboniaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae	2.94 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	2.94 %
Acidimicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae	1.96 %
Mycobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae	1.96 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.98 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	4.90 %
Trebonia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia	2.94 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	2.94 %
unclassified Acidimicrobiaceae	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae → unclassified Acidimicrobiaceae	0.98 %
Mycobacteroides	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacteroides	0.98 %
Mycobacterium	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium	0.98 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.98 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	4.90 %
Trebonia kvetii	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	2.94 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	2.94 %
Mycobacteroides abscessus	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacteroides → Mycobacteroides abscessus	0.98 %
Acidimicrobiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae → unclassified Acidimicrobiaceae → Acidimicrobiaceae bacterium	0.98 %
Mycobacterium	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium	0.98 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.98 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300005436\|Ga0070713_101239576	Not Available	722	Open in IMG/M
3300005602\|Ga0070762_10217637	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1175	Open in IMG/M
3300005602\|Ga0070762_10343497	Not Available	950	Open in IMG/M
3300005764\|Ga0066903_100364748	All Organisms → cellular organisms → Bacteria	2347	Open in IMG/M
3300006052\|Ga0075029_100100922	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1732	Open in IMG/M
3300006052\|Ga0075029_100210996	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1215	Open in IMG/M
3300006059\|Ga0075017_100018081	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	4561	Open in IMG/M
3300006059\|Ga0075017_100042523	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3029	Open in IMG/M
3300006059\|Ga0075017_100405613	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1023	Open in IMG/M
3300006086\|Ga0075019_10315773	Not Available	943	Open in IMG/M
3300006102\|Ga0075015_100356481	Not Available	816	Open in IMG/M
3300006102\|Ga0075015_100742801	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	585	Open in IMG/M
3300006162\|Ga0075030_100144832	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1924	Open in IMG/M
3300006174\|Ga0075014_100590462	Not Available	634	Open in IMG/M
3300006176\|Ga0070765_100082731	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacteroides → Mycobacteroides abscessus	2728	Open in IMG/M
3300006176\|Ga0070765_100715092	Not Available	946	Open in IMG/M
3300006176\|Ga0070765_101056879	Not Available	767	Open in IMG/M
3300007982\|Ga0102924_1161545	All Organisms → cellular organisms → Bacteria	1020	Open in IMG/M
3300009523\|Ga0116221_1187585	Not Available	897	Open in IMG/M
3300009524\|Ga0116225_1088697	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1442	Open in IMG/M
3300009525\|Ga0116220_10421687	Not Available	598	Open in IMG/M
3300009644\|Ga0116121_1075435	Not Available	1055	Open in IMG/M
3300009672\|Ga0116215_1291910	Not Available	710	Open in IMG/M
3300009683\|Ga0116224_10090064	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1489	Open in IMG/M
3300009683\|Ga0116224_10417869	Not Available	638	Open in IMG/M
3300009700\|Ga0116217_10060336	All Organisms → cellular organisms → Bacteria	2701	Open in IMG/M
3300009700\|Ga0116217_10236882	Not Available	1188	Open in IMG/M
3300009700\|Ga0116217_10403955	Not Available	867	Open in IMG/M
3300009824\|Ga0116219_10261892	Not Available	980	Open in IMG/M
3300010361\|Ga0126378_12436157	Not Available	598	Open in IMG/M
3300010376\|Ga0126381_102922697	Not Available	680	Open in IMG/M
3300010376\|Ga0126381_102959765	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	675	Open in IMG/M
3300010379\|Ga0136449_100046983	All Organisms → cellular organisms → Bacteria	9814	Open in IMG/M
3300010379\|Ga0136449_100573283	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1933	Open in IMG/M
3300010379\|Ga0136449_102334239	Not Available	774	Open in IMG/M
3300014156\|Ga0181518_10047680	All Organisms → cellular organisms → Bacteria	2601	Open in IMG/M
3300014164\|Ga0181532_10006210	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	9985	Open in IMG/M
3300014165\|Ga0181523_10076502	All Organisms → cellular organisms → Bacteria	2032	Open in IMG/M
3300014200\|Ga0181526_10226364	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1194	Open in IMG/M
3300014501\|Ga0182024_10008152	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	22263	Open in IMG/M
3300014501\|Ga0182024_11004623	Not Available	995	Open in IMG/M
3300016341\|Ga0182035_12103807	Not Available	512	Open in IMG/M
3300016445\|Ga0182038_10460744	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1078	Open in IMG/M
3300016750\|Ga0181505_10645418	All Organisms → cellular organisms → Bacteria	926	Open in IMG/M
3300017988\|Ga0181520_10795237	All Organisms → cellular organisms → Bacteria	638	Open in IMG/M
3300018037\|Ga0187883_10198984	Not Available	1027	Open in IMG/M
3300018044\|Ga0187890_10370257	Not Available	803	Open in IMG/M
3300019787\|Ga0182031_1454778	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1333	Open in IMG/M
3300020580\|Ga0210403_10053170	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3240	Open in IMG/M
3300020581\|Ga0210399_10192734	All Organisms → cellular organisms → Bacteria	1693	Open in IMG/M
3300020583\|Ga0210401_10002913	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	18575	Open in IMG/M
3300021180\|Ga0210396_10444289	Not Available	1138	Open in IMG/M
3300021402\|Ga0210385_10243401	Not Available	1320	Open in IMG/M
3300021402\|Ga0210385_10957517	Not Available	658	Open in IMG/M
3300021403\|Ga0210397_11247129	Not Available	578	Open in IMG/M
3300021420\|Ga0210394_10461479	Not Available	1118	Open in IMG/M
3300021432\|Ga0210384_10616391	Not Available	974	Open in IMG/M
3300021474\|Ga0210390_10020834	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	5334	Open in IMG/M
3300021474\|Ga0210390_11111000	Not Available	642	Open in IMG/M
3300021477\|Ga0210398_11049513	Not Available	649	Open in IMG/M
3300021560\|Ga0126371_13212786	Not Available	553	Open in IMG/M
3300022557\|Ga0212123_10421524	All Organisms → cellular organisms → Bacteria	888	Open in IMG/M
3300022714\|Ga0242671_1126439	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium	509	Open in IMG/M
3300024225\|Ga0224572_1057100	Not Available	724	Open in IMG/M
3300027692\|Ga0209530_1064454	Not Available	1062	Open in IMG/M
3300027696\|Ga0208696_1185485	Not Available	663	Open in IMG/M
3300027696\|Ga0208696_1278269	Not Available	515	Open in IMG/M
3300027898\|Ga0209067_10541069	Not Available	664	Open in IMG/M
3300027898\|Ga0209067_10715983	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	581	Open in IMG/M
3300027905\|Ga0209415_10269316	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae	1507	Open in IMG/M
3300027908\|Ga0209006_10713831	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	820	Open in IMG/M
3300027911\|Ga0209698_10084710	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2681	Open in IMG/M
3300027911\|Ga0209698_10259497	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	1386	Open in IMG/M
3300027911\|Ga0209698_10374475	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1116	Open in IMG/M
3300028759\|Ga0302224_10045669	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae → unclassified Acidimicrobiaceae → Acidimicrobiaceae bacterium	1632	Open in IMG/M
3300029999\|Ga0311339_10036789	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	6846	Open in IMG/M
3300030007\|Ga0311338_11307740	Not Available	680	Open in IMG/M
3300030707\|Ga0310038_10050620	All Organisms → cellular organisms → Bacteria → Terrabacteria group	2345	Open in IMG/M
3300030815\|Ga0265746_1023342	Not Available	764	Open in IMG/M
3300030906\|Ga0302314_10346989	All Organisms → cellular organisms → Bacteria	1681	Open in IMG/M
3300031057\|Ga0170834_104797475	Not Available	1070	Open in IMG/M
3300031234\|Ga0302325_10450682	All Organisms → cellular organisms → Bacteria	1973	Open in IMG/M
3300031543\|Ga0318516_10363692	Not Available	835	Open in IMG/M
3300031546\|Ga0318538_10473815	All Organisms → cellular organisms → Bacteria	678	Open in IMG/M
3300031561\|Ga0318528_10183574	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1118	Open in IMG/M
3300031671\|Ga0307372_10058925	All Organisms → cellular organisms → Bacteria	3553	Open in IMG/M
3300031682\|Ga0318560_10248601	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	955	Open in IMG/M
3300031708\|Ga0310686_102693313	All Organisms → cellular organisms → Bacteria → Terrabacteria group	950	Open in IMG/M
3300031708\|Ga0310686_112441257	Not Available	690	Open in IMG/M
3300031833\|Ga0310917_10904853	Not Available	594	Open in IMG/M
3300031890\|Ga0306925_11219497	Not Available	753	Open in IMG/M
3300031910\|Ga0306923_11516227	All Organisms → cellular organisms → Bacteria	701	Open in IMG/M
3300032001\|Ga0306922_11143118	Not Available	796	Open in IMG/M
3300032001\|Ga0306922_11474486	Not Available	681	Open in IMG/M
3300032160\|Ga0311301_10138434	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	4474	Open in IMG/M
3300032160\|Ga0311301_10172665	Not Available	3811	Open in IMG/M
3300032160\|Ga0311301_10348626	Not Available	2318	Open in IMG/M
3300032160\|Ga0311301_11287773	Not Available	925	Open in IMG/M
3300032515\|Ga0348332_12178677	Not Available	619	Open in IMG/M
3300034163\|Ga0370515_0287398	Not Available	696	Open in IMG/M
3300034163\|Ga0370515_0478948	Not Available	525	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	99.02%
Host-Associated	Host-Associated	0.98%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	72.55%
Aquatic	Environmental → Aquatic	26.47%
Plants	Host-Associated → Plants	0.98%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	66.67%
Sediment	Environmental → Aquatic → Sediment	14.71%
Freshwater	Environmental → Aquatic → Freshwater	9.80%
Peat	Environmental → Terrestrial → Peat	4.90%
Thermal Springs	Environmental → Aquatic → Thermal Springs	1.96%
Plant Litter	Environmental → Terrestrial → Plant Litter	0.98%
Rhizosphere	Host-Associated → Plants → Rhizosphere	0.98%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	51.96%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	14.71%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	9.80%
Loam	Environmental → Terrestrial → Soil → Loam	8.82%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	4.90%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	4.90%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	1.96%
Clay	Environmental → Terrestrial → Soil → Clay	0.98%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified	0.98%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	0.98%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	27.45%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	24.51%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	14.71%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	8.82%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	7.84%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	4.90%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	2.94%
Acidic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic	1.96%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	1.96%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	0.98%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	0.98%
Unclassified	Environmental → Terrestrial → Soil → Clay → Unclassified	0.98%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified	0.98%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	0.98%

Habitat	Taxonomy	Distribution
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	20.59%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	17.65%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	14.71%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	5.88%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	5.88%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	4.90%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	4.90%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	3.92%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	2.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.94%
Iron-Sulfur Acid Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring	1.96%
Untreated Peat Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil	1.96%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost	1.96%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	1.96%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	0.98%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.98%
Bog	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog	0.98%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.98%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.98%
Soil	Environmental → Terrestrial → Soil → Clay → Unclassified → Soil	0.98%
Plant Litter	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter	0.98%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.98%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005602	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006052	Freshwater sediment microbial communities from North America - Little Laurel Run_MetaG_LLR_2013	Environmental	Open in IMG/M
3300006059	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2012	Environmental	Open in IMG/M
3300006086	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2013	Environmental	Open in IMG/M
3300006102	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2013	Environmental	Open in IMG/M
3300006162	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012	Environmental	Open in IMG/M
3300006174	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2014	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300007982	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPM 11 metaG	Environmental	Open in IMG/M
3300009523	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_8_FC metaG	Environmental	Open in IMG/M
3300009524	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_c_BC metaG	Environmental	Open in IMG/M
3300009525	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_7_NC metaG	Environmental	Open in IMG/M
3300009644	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_13_10	Environmental	Open in IMG/M
3300009672	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_2_FS metaG	Environmental	Open in IMG/M
3300009683	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_b_LC metaG	Environmental	Open in IMG/M
3300009700	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_4_PS metaG	Environmental	Open in IMG/M
3300009824	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_6_BS metaG	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300014156	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin01_60_metaG	Environmental	Open in IMG/M
3300014164	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_30_metaG	Environmental	Open in IMG/M
3300014165	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_30_metaG	Environmental	Open in IMG/M
3300014200	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin06_30_metaG	Environmental	Open in IMG/M
3300014501	Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300016750	Metatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_30_metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300017988	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin02_30_metaG	Environmental	Open in IMG/M
3300018037	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_20_10	Environmental	Open in IMG/M
3300018044	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_21_10	Environmental	Open in IMG/M
3300019787	Permafrost microbial communities from Stordalen Mire, Sweden - 812S3M metaG (PacBio error correction)	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021180	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O	Environmental	Open in IMG/M
3300021402	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-O	Environmental	Open in IMG/M
3300021403	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021474	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O	Environmental	Open in IMG/M
3300021477	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-O	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300022557	Paint Pots_combined assembly	Environmental	Open in IMG/M
3300022714	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300024225	Spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic ? CZU5	Host-Associated	Open in IMG/M
3300027692	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_O1 (SPAdes)	Environmental	Open in IMG/M
3300027696	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_b_LC metaG (SPAdes)	Environmental	Open in IMG/M
3300027898	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2013 (SPAdes)	Environmental	Open in IMG/M
3300027905	Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007 (SPAdes)	Environmental	Open in IMG/M
3300027908	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 (SPAdes)	Environmental	Open in IMG/M
3300027911	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012 (SPAdes)	Environmental	Open in IMG/M
3300028759	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E3_1	Environmental	Open in IMG/M
3300029999	I_Palsa_E3 coassembly	Environmental	Open in IMG/M
3300030007	I_Palsa_E1 coassembly	Environmental	Open in IMG/M
3300030707	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_4_PS metaG (v2)	Environmental	Open in IMG/M
3300030815	Metatranscriptome of soil microbial communities from Maridalen valley, Oslo, Norway - NSU2 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030906	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_N2_3	Environmental	Open in IMG/M
3300031057	Oak Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031234	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_2	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031546	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23	Environmental	Open in IMG/M
3300031561	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f26	Environmental	Open in IMG/M
3300031671	Soil microbial communities from Risofladan, Vaasa, Finland - OX-1	Environmental	Open in IMG/M
3300031682	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f22	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031833	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental	Open in IMG/M
3300032515	FICUS49499 Metatranscriptome Czech Republic combined assembly (additional data)	Environmental	Open in IMG/M
3300034163	Peat soil microbial communities from wetlands in Alaska, United States - Goldstream_04D_14	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0070713_1012395762	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MHPELLRALGKARHEDLLSARRSRGQPNLRPDDPSPRFARSRQRVGSLLIWAGARLIGDRKAALELAQK*
Ga0070762_102176372	3300005602	Soil	MHPELLRALAKARHEDLLNGRRTRAQPRVRLDDHSRRLPRSRQRVGSLFIWAGAHLIGDRQAALELAQK*
Ga0070762_103434974	3300005602	Soil	MHPELLRALGNARHEDLLNPYRSRRQPRIRLNDQSPRFTRLRQRVGSRLIWAGERLTGDRPAAVELAHK*
Ga0066903_1003647481	3300005764	Tropical Forest Soil	MHPELLRALGKARHEELLNERRRRPPPRVRVDGDSPRFPRSRRWAGSLLIWAGERLIGEGPGGLELAHK*
Ga0075029_1001009221	3300006052	Watersheds	MHPELLRALATARHEDLLTARRTRGHPRGRLHDHSPRFPRIRVRVGALLVWAGSRLAGDQQAPLELAHK*
Ga0075029_1002109961	3300006052	Watersheds	VLAKARHDDLLNRRGTLVQTRIRRDDDSRRFLRSRRRVGSLLIWAGARLIGDHRDPLELAHE*
Ga0075017_1000180816	3300006059	Watersheds	MHPELLRALGNARHEDLLNERRTRGQPRVRHDHRSPRFARSRQRVGSLLIWAGARLIGDQRAALELAQK*
Ga0075017_1000425235	3300006059	Watersheds	MHPELLRALGKARHEDLLNERRTRGQARVRLDHRSSRFPRSRQRVGSLLIWAGARLIGDQRAALELAHK*
Ga0075017_1004056133	3300006059	Watersheds	MHPEVLRALAKARHEDLLNDGRTGRTRRQPRVRLDGHSPRFPRARQRAGTLLIWAGARLIGDQRA
Ga0075019_103157732	3300006086	Watersheds	MHPELLRALAQARHEDLLTERRNRGQASARLGRHSSLIARSRKRVGSLLIWAGARLTGDQRAALELAHVAEQS*
Ga0075015_1003564812	3300006102	Watersheds	MHPELLRALAQARHEDLLTERRNRGQASARLGRHSSLIARSRKRVGSLLIWAGARLTGDQRAALE
Ga0075015_1007428012	3300006102	Watersheds	MHPELLRALATARHEDLLTARRTRGHPRGRLHDHSPRFPRTRGRVGALLVWAGSRLAGDQ
Ga0075030_1001448323	3300006162	Watersheds	MHPDLLRVLAKARHDDLLNRRGTLVQTRIRRDDDSRRFLRSRRRVGSLLIWAGARLMGDHRDPLELAHE*
Ga0075014_1005904622	3300006174	Watersheds	MHPELLRALGKARHEDLLNERRTRGQPRVRLDDHSPRFPRSRQRVGSLLIWAGARLIGDQRAALELAHK*
Ga0070765_1000827313	3300006176	Soil	MHPELLRALGNARHEDLLNPYRSRGQPRIRLNDQSPRFTRLRQRVGSRLIWAGERLTGDRPAAVELAHK*
Ga0070765_1007150921	3300006176	Soil	MHPEFLRALAKARHDDLLEEHRSRGQPTIRSSDRSQSFVRSRRRMGALLIWAGTRLIGDGRRGLELSHE*
Ga0070765_1010568792	3300006176	Soil	MHPDLLRALARARHQDLLDKPRTQAPARARLDDPSPRFSRSRQRLGSILVWAGSRLIGDEQAALELTHE*
Ga0102924_11615451	3300007982	Iron-Sulfur Acid Spring	MHPELLRALAEARHEDLLSESRARGHAHVRVDGYAPLFSRSRQRVGALLISTGARLVGDQRAALEFAHE*
Ga0116221_11875851	3300009523	Peatlands Soil	MHPELLRALARARHQDLLSDRRPRGQPKDRSDDHSPLFPRSRRRVGSLLIWAGSRLIGDQRAAVELAHE*
Ga0116225_10886973	3300009524	Peatlands Soil	MHPELLRALATARHEDLLNERRTQGQPSVRHHSPRFPRSRRRVGSLLIWAGARLTGDRRAALELAHK*
Ga0116220_104216871	3300009525	Peatlands Soil	MHPELLRALAKARHEDLLDERRTRGQPRVRLNDHSARFPRARHRVGSLLIWAGARLIGDQRAALELAHK*
Ga0116121_10754352	3300009644	Peatland	MHPELLRALARARHDDLLNDHRARGQPRVRLDDHRPRFSRSRRRVGSLFIWAGARLLGEERA
Ga0116215_12919101	3300009672	Peatlands Soil	MHPELLRALAKARHEDLLNEPRTRGRPRVRLDDHSPRFPRSRQRVGSLLIGAGTRLIGDHHRAALELAHE*
Ga0116224_100900643	3300009683	Peatlands Soil	MHPELLRALATARHEDLLNERRTQGQPSVRHHSPRFPRSRRRVGSLLIWAGARLTGDRRAALEL
Ga0116224_104178692	3300009683	Peatlands Soil	MHPELLRALAKARHEDLLDERRTRGRPRLRLDDHSPRFPRSRQRVGSLLIWAGARLTGDHRAALELARD*
Ga0116217_100603361	3300009700	Peatlands Soil	MHPELLRALAKARHEDLLDERRTRGQPRVRLIDRSARFPRARHRVGSLLIWAGARLIGDQRAALELAHK*
Ga0116217_102368822	3300009700	Peatlands Soil	MHPELLRALARARHTDLLNEHPTRGWPTVRLRHHSPRLPRSRRRVGSLLIWAGAHLVGDQRAALELAHK*
Ga0116217_104039553	3300009700	Peatlands Soil	MHPELLRALARARHQDLLSDRRPRGQPKHRSDDHSPLFPRSRQRVGSLLIWAGSRLIGDQRAAVELAHE*
Ga0116219_102618923	3300009824	Peatlands Soil	MHPELLRALARARHQDLLSDRRPRGQPKDRSDDHSPLFPRSRRRVGSLLIWAGSRLIGDQRAAVKLAHE*
Ga0126378_124361572	3300010361	Tropical Forest Soil	MHPELLRALAKARHEDLLNARQPRRQQRIRLDSDSRRFPRSRRRAGSLLIWAGERLIGNRRAGLAGA*
Ga0126381_1029226972	3300010376	Tropical Forest Soil	MHPEMLRALAEATHKDLLNQARNRRQPRVRLVHRSPLLARSRKRVGSLLIWAGARLIGDQRRTVELAQVAERT*
Ga0126381_1029597651	3300010376	Tropical Forest Soil	MHPELLRALGKARHEDLLNERRRRPRPRVRVDGDSPRFPRSRRWAGSLLIWAGERLIGEGPGGLELAHK*
Ga0136449_1000469833	3300010379	Peatlands Soil	MHPELLRALATARHQDLLNKPRTRGQPRVRLDERSPRFPRSRQRVGSLLVWAGARLIGDQRAALELTHEAPGQRSELARATQT*
Ga0136449_1005732833	3300010379	Peatlands Soil	MHPELLRALATARHEDLLTARRTRRQPRGRLRDHSPRFPRTRGRVGSLLVWAGSRLAGDQRAPLELAHK*
Ga0136449_1023342391	3300010379	Peatlands Soil	MHPELLRALGKARHEDLLNVRRTRGQPRVRLDDDSPRFPRSRQRVGSLLISAGARLIGDR
Ga0181518_100476802	3300014156	Bog	MHPELLRALAKARHEDLLNDRRIQGHPRFRPDVHSPRFPRARRRVGSLLIWAGARMLGDQPAALELAHE*
Ga0181532_1000621010	3300014164	Bog	MHPELLRALAKARHEDLLDDRRIREKPRVRPEDHSPRFARSRRRVGSLLIWAGARLLGDQPAALELAHK*
Ga0181523_100765022	3300014165	Bog	MHPELLRALAKARHEDLLNKRRTRGQPRVRLNDHSPRFPRSRQRVGSLLIWAGARLIGDQRAALDLAHK*
Ga0181523_107227261	3300014165	Bog	MHPDLLRALAKARHDDLLNERRSRGQPALRHHDRSPLFFRSRQRLGSLLIWAGARLL
Ga0181526_102263642	3300014200	Bog	MHPELLRALAKARHEDLLNRRQTRRQPRVRLGDQSRPFPRSRQRIGSVLIWAGAHLIGDRQAALELAHK*
Ga0182024_100081521	3300014501	Permafrost	MHPDLLRALAKARHEDLLTERRTRGQPRLRLHKQSPRFPRSRQRLGSLLIWAGARLVGDQRAALELTHK*
Ga0182024_110046232	3300014501	Permafrost	MHPELLRALAKARHADLLNERRPHRHPRAGPDDHSSRFPRARQRAGSLLIWAGGRLIGDKRAALELSHK*
Ga0182035_121038071	3300016341	Soil	MHPELLRALGKARHEDLLNERRTRRQPRVRFDDSPRFPRSRQRVGSLLIWAGEVLIAERWAGLEPAHK
Ga0182038_104607441	3300016445	Soil	MHPELLRALGKARHEDLLNERRTRRQPRVRFDDSPRFPRSRQRVGSLLIWAGEVLI
Ga0181505_106454181	3300016750	Peatland	APMHLELLRALAKARHEDLLDDRRIREKPRVRPEDHSPRFARSRRRVGSLLIWAGARLLGDQPAALELAHK
Ga0181520_107952371	3300017988	Bog	MHPELLRALAKARHEDLLDDRRIREKPRVRPEDHSPRFARSRRRVGSLLIWAGARLLGDQPAALELAHK
Ga0187883_101989842	3300018037	Peatland	MHPELLRALARARHEDLLHERRTRGQPRVRRDHHSSPFARSRQRVGSLLIWAGARLMDDQQAPLELAQK
Ga0187890_103702572	3300018044	Peatland	MHPELLRALAKARHEDLLNRRQTRRQPRVRLGDQSRPFPRSRQRIGSVLIWAGAHLIGDRQAALELAHK
Ga0182031_14547782	3300019787	Bog	MHPDLLRALAKTRHEELLARRQNPRHLGVRRDAHSARFVRSRKRLGTLLIWVGARLIGDQPAAVKLAQK
Ga0210403_100531704	3300020580	Soil	MHPELLRALGNARHEDLLNPYRSRRQPRIRLNDQSPRFTRLRQRVGSRLIWAGERLTGDRPAAVELAHK
Ga0210399_101927341	3300020581	Soil	MHPELLRALGNARHEDLLNPYRSRRQPRIRLNDQSPRFTRLRQRVGSRLIWAGERLTGDRPAAVEL
Ga0210401_100029136	3300020583	Soil	MHPELLRALGNARHEDLLNTYRSRGQPRFRLNDQSPRFTRLRQRVGSLLIWAGERLTGDQQAAVELAHK
Ga0210396_104442892	3300021180	Soil	MHPELLRALGNARHQDLLNTYRSRGQPRFRLNDQTPRFTRLRQRVGSLLIWAGERLTGDRQAAVELAHK
Ga0210385_102434012	3300021402	Soil	MHPDLLRALARARHQDLLDKPRTQAPARARLDDPSPRFSRSRQRLGSILVWAGSRLIGDEQAALELTHE
Ga0210385_109575171	3300021402	Soil	MHPEFLRALAKARHDDLLEEHRSRGQPTIRSSDRSQSFVRSRRRMGALLIWAGTRLIGDGRRGLELSHE
Ga0210397_112471291	3300021403	Soil	MHPDLLRALAKTRHEELLAKRQSPGHTRVRRDAHSPRFVRSRKRLGALLIGAGARLIGDQRAALDLAQK
Ga0210394_104614792	3300021420	Soil	MHPELLRALGNARHEDLLNTYRSRGQPRFRLKDQSPRFTRLRQRVGSLLIWAGERLTGDRQAAVELAHK
Ga0210384_106163911	3300021432	Soil	MHPELLRALGNARHEDLLNTHRSRGQPRFRLNDQSPRFTRLRQRVGSLLIWAGERLTGDR
Ga0210390_100208347	3300021474	Soil	MHPELLRTLAKARHDDLLNTHPARGQPKFRLIEHLPRFSGSRRWLGSLFIRAGARLTGERPGVLEPAHE
Ga0210390_111110001	3300021474	Soil	MHPELLRALGNARHQDLLNTYRSRGQPRFRLNDQSPRFTPLRQRVGSLLIWAGERLTGDRQAAVELAHK
Ga0210398_110495131	3300021477	Soil	MHPELLRALGNARHEDLLNTYRSRGQPRFRLNDQSPRFTRLRQRVGSLLIWAGERLTGDRQAAVELAHK
Ga0126371_132127862	3300021560	Tropical Forest Soil	MHPELLRALGKARHQDLLNERRNRRQPRVRLNDDALRFTRSRRRVGSLLIWAGERLMGDRPAGLARA
Ga0212123_104215241	3300022557	Iron-Sulfur Acid Spring	ELLRALAEARHEDLLSESRARGHAHVRVDGYAPLFSRSRQRVGALLISTGARLVGDQRAALEFAHE
Ga0242671_11264391	3300022714	Soil	PMHPELLRALAKARHEDLLREGRNRGHPTVKLDDQSPLFPRSRQRVGALLIWAGARLIGDQQAALELAHE
Ga0224572_10571001	3300024225	Rhizosphere	MHPDLLRALAKARHEDLLTTRQNPGHPRVQRDGHPLRFARSRQRLGSLFIWAGSHLIGDQRAALEPAQK
Ga0209530_10644541	3300027692	Forest Soil	MHPDLLRALAKARHEELLTKRQSPGHPRVQRDAHPLRFARSRQRLGLLLIWAGSHLIGNQRAALEPARE
Ga0208696_11854852	3300027696	Peatlands Soil	MHPELLRALAKARHEDLLDERRTRGRPRLRLDDHSPRFPRSRQRVGSLLIWAGARLTGDHRAALELARD
Ga0208696_12782691	3300027696	Peatlands Soil	MHPELLRALATARHEDLLNERRTRGQPSVRHHSPRFPRSRRRVGSLLIWAGARLTGDRRAALE
Ga0209067_105410691	3300027898	Watersheds	MHPELLRALARARHVDLLNEHSTRGWPTVRLGHHSPRFRRSRQRVGSLLIWAGARLIGDQRAALELAHK
Ga0209067_107159831	3300027898	Watersheds	MHPELLRALATARHEDLLTARRTRGHPRGRLHDHSPRFPRTRGRVGALLVWAGSRLA
Ga0209415_102693161	3300027905	Peatlands Soil	MHPELLRALARARHQDLLSDRRPRGQPKDRSDDHSPRFPRSRRRVGSLLIWAGSRLIGDQRAA
Ga0209006_107138311	3300027908	Forest Soil	MHPELLRALARARHNHLLTRHHTRGQPPARRGSHVPRFARSRQRLGSLLIWAGARLMGDQRAALELARK
Ga0209698_100847103	3300027911	Watersheds	MHPDLLRVLAKARHDDLLNRRGTLVQTRIRRDDDSRRFLRSRRRVGSLLIWAGARLMGDHRDPLELAHE
Ga0209698_102594972	3300027911	Watersheds	MHPELLRALATARHEDLLTARRTRGHPRGRLHDHSPRFPRTRGRVGALLVWAGSRLAGDQQAPLELAHK
Ga0209698_103744752	3300027911	Watersheds	MHPELLRALGKARHEDLLNERRTRGQPRVRLDHRSPRFLRSRRRVGSLLIWAGARLIGDQRAALELAQK
Ga0302224_100456692	3300028759	Palsa	MHPELLRALAKARHQDLLNKPRTQAQTRLRLDDPSPRFSRSRRRVGALLVWAGSRLIGDQQSALELTHE
Ga0311339_100367895	3300029999	Palsa	MHPELLRALANARHQDLLNKPRTRAQARVQLDDPSPRFSRSRQRVGSLLVWAGSRLMGDQQSALELTHE
Ga0311338_113077401	3300030007	Palsa	MHPDLLRALAKARHEDLLAKRQNSGHLRVQRDAHGLRFARSRQRLGSLLIWAGSHLSGDQRAALEPAQK
Ga0310038_100506202	3300030707	Peatlands Soil	MHPELLRALATARHEDLLNERRTQGQPSVRHHSPRFPRSRRRVGSLLIWAGARLTGDRRAALELAHK
Ga0265746_10233422	3300030815	Soil	MHPDLLRALAKTRHEELLAKRQNPGRPRVRPDANSPLFVRSRKRLGALLIWAGARLIGDKRAALDLAQK
Ga0302314_103469893	3300030906	Palsa	MHPELLRALAKARHEDLLTKRPSPGLPRIQRDVHSLRFARSRQRLGALLIWAGAHLIGDQRAALEP
Ga0170834_1047974752	3300031057	Forest Soil	MHPELLRALAKARHEDLLSARRSRGQPRVHHDDQSPRFSRSRQRVGSLLIWAGARVIGDGRATLELSHK
Ga0302325_104506821	3300031234	Palsa	MHPELLRALAKARHEDLLTKRPSPGLPRIQRDVHSLRFARSRQRLGALLIWAGAHLIGDQ
Ga0318516_103636922	3300031543	Soil	MHPELLRALGRARHEDLLNERQTRRPRVRLDDDAPRFPRARQRVGSLFIWAGELLIGDRRAGLELAHK
Ga0318538_104738152	3300031546	Soil	MHPELLRALGQARHQDLLNERRTRQQPRVRLDDDSRRFPRSRRRAGSLLIWTGERLIGDRRAGLELAHE
Ga0318528_101835742	3300031561	Soil	VHPELLRALGKARHEDLLDERRSRRKPRVTLHDHSLRFARSRQRMGSLLIWAGARLIGDRGGAMELAHK
Ga0307372_100589253	3300031671	Soil	MHPDLLRALARTRHEDLLAKRQNPGHPRVRRDGHSPRFVRSRKRLGSLLIWAGARLIGDQIAALELAQK
Ga0318560_102486011	3300031682	Soil	MHPELLRALGKARHEDLLNERRTRRQPRVRFDDSPRFPRSRQRVGSLLIWAGEVLIAERWAG
Ga0310686_1026933131	3300031708	Soil	MHPELLRALAKARHEDLLREGRKRGHPTVKLDDQSPLFPRSRQRVGALLIWAGARLISDQQAALELAHE
Ga0310686_1124412572	3300031708	Soil	MHPELLRALAKARHEDLLSERQTRAQPRVHLDEHSPRFPRSRRRLGSLLIWAGARLIGDQRAALELAHK
Ga0310917_109048531	3300031833	Soil	MHPEMLRALGKARHEDLLNERRTRRQPRVRFDDSPRFPRSRQRVGSLLIWAGEVLIAERWAGLEPAHK
Ga0306925_112194971	3300031890	Soil	MHPELLRALGRARHEDLLNERQTRRPRVRLDDDAPRVPRARQRVGSLFIWAGELLIGDRRAGLELAHK
Ga0306923_115162272	3300031910	Soil	MHPELLRALGKARHQDLLNERRTRQQPRVRLDDDSRRFPRSRRRAGSLLIWTGERLIGDRRAGLELAHE
Ga0306922_111431182	3300032001	Soil	MHPELLRALGRARHEDLLNERQTRRPRVRLDDDAPRFPRARQRVGSLFIWAGELLIGDRRAGLELAHE
Ga0306922_114744861	3300032001	Soil	PRDNACFLPKGGPMHPELLRALGKARHEDLLNERRTRRQPRVRFDDSPRFPRSRQRVGSLLIWAGEVLIAERWAGLEPAHK
Ga0311301_101384344	3300032160	Peatlands Soil	MHPELLRALATARHEDLLTARRTRRQPRGRLRDHSPRFPRTRGRVGSLLVWAGSRLAGDQRAPLELAHK
Ga0311301_101726652	3300032160	Peatlands Soil	MHPELLRALATARHQDLLNKPRTRGQPRVRLDERSPRFPRSRQRVGSLLVWAGARLIGDQRAALELTHEAPGQRSELARATQT
Ga0311301_103486263	3300032160	Peatlands Soil	MHPELLRALARARHQDLLSDRRPRGQPKDRSDDHSPLFPRSRRRVGSLLIWAGSRLIGDQRAAVKLAHE
Ga0311301_112877732	3300032160	Peatlands Soil	MHPELLRALAKARHEDLLDERRTRGQPRVRLIDRSARFPRARHRVGSLLIWAGARLIGDQRAALELAHK
Ga0348332_121786772	3300032515	Plant Litter	MHPELLRALAQARHEDLLNEHRSRGQPAIRHKDESPRFPRSRRRMGALLIWAGTRLIGDGRAALELSHE
Ga0370515_0287398_134_343	3300034163	Untreated Peat Soil	MHPELLRALAKARHQDLLNKPRTRAQARVRLDDPSPRFSRSRQRVGSLLVWAGSRLIGDQQSALELTHE
Ga0370515_0478948_101_310	3300034163	Untreated Peat Soil	MHPEMLRALARARHEDLLNGHRARGQPRVRPDNHWPSFAPSRQRVGSLLIRAGARLLGEERAVLELTHE

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F101679

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences