Metagenome / Metatranscriptome Family F101671

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F101671
Family Type	Metagenome / Metatranscriptome
Number of Sequences	102
Average Sequence Length	42 residues
Representative Sequence	KGTEKGKPYVHRERFVDTWIKLNGTWQCVATTSTLITAK
Number of Associated Samples	89
Number of Associated Scaffolds	102

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	100.00 %
% of genes from short scaffolds (< 2000 bps)	96.08 %
Associated GOLD sequencing projects	87
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.43

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (92.157 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (17.647 % of family members)
Environment Ontology (ENVO)	Unclassified (27.451 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (50.000 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 0.00% β-sheet: 47.76% Coil/Unstructured: 52.24%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.43
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.43
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 102 Family Scaffolds
PF00106	adh_short	12.75
PF01263	Aldose_epim	9.80
PF14534	DUF4440	6.86
PF07963	N_methyl	3.92
PF11154	DUF2934	2.94
PF00589	Phage_integrase	2.94
PF13852	DUF4197	2.94
PF13414	TPR_11	0.98
PF07519	Tannase	0.98
PF12215	Glyco_hydr_116N	0.98
PF01011	PQQ	0.98
PF05336	rhaM	0.98
PF13533	Biotin_lipoyl_2	0.98
PF13374	TPR_10	0.98
PF07690	MFS_1	0.98
PF14517	Tachylectin	0.98
PF00326	Peptidase_S9	0.98
PF01288	HPPK	0.98
PF03069	FmdA_AmdA	0.98
PF02129	Peptidase_S15	0.98
PF13431	TPR_17	0.98
PF13302	Acetyltransf_3	0.98
PF13545	HTH_Crp_2	0.98
PF11138	DUF2911	0.98
PF00578	AhpC-TSA	0.98
PF01041	DegT_DnrJ_EryC1	0.98
PF04055	Radical_SAM	0.98
PF13561	adh_short_C2	0.98

COG ID	Name	Functional Category	% Frequency in 102 Family Scaffolds
COG0676	D-hexose-6-phosphate mutarotase	Carbohydrate transport and metabolism [G]	9.80
COG2017	Galactose mutarotase or related enzyme	Carbohydrate transport and metabolism [G]	9.80
COG0399	dTDP-4-amino-4,6-dideoxygalactose transaminase	Cell wall/membrane/envelope biogenesis [M]	0.98
COG0436	Aspartate/methionine/tyrosine aminotransferase	Amino acid transport and metabolism [E]	0.98
COG0520	Selenocysteine lyase/Cysteine desulfurase	Amino acid transport and metabolism [E]	0.98
COG0626	Cystathionine beta-lyase/cystathionine gamma-synthase	Amino acid transport and metabolism [E]	0.98
COG0801	7,8-dihydro-6-hydroxymethylpterin pyrophosphokinase (folate biosynthesis)	Coenzyme transport and metabolism [H]	0.98
COG1104	Cysteine desulfurase/Cysteine sulfinate desulfinase IscS or related enzyme, NifS family	Amino acid transport and metabolism [E]	0.98
COG2421	Acetamidase/formamidase	Energy production and conversion [C]	0.98
COG2873	O-acetylhomoserine/O-acetylserine sulfhydrylase, pyridoxal phosphate-dependent	Amino acid transport and metabolism [E]	0.98
COG3254	L-rhamnose mutarotase	Cell wall/membrane/envelope biogenesis [M]	0.98

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	92.16 %
Unclassified	root	N/A	7.84 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	92.16 %
Unclassified	root	N/A	7.84 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	92.16 %
Unclassified	root	N/A	7.84 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	49.02 %
Unclassified	root	N/A	7.84 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1.96 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.98 %

Name	Rank	Taxonomy	Distribution
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	37.25 %
Unclassified	root	N/A	7.84 %
Cyanobacteria/Melainabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group	0.98 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.98 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.98 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	37.25 %
Unclassified	root	N/A	7.84 %
Ktedonobacteria	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Ktedonobacteria	0.98 %
Xanthomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales	0.98 %
Cyanobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	0.98 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	37.25 %
Unclassified	root	N/A	7.84 %
Rhodanobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae	0.98 %
Ktedonobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Ktedonobacteria → Ktedonobacterales	0.98 %
Nostocales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales	0.98 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	37.25 %
Unclassified	root	N/A	7.84 %
Dictyobacteraceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Ktedonobacteria → Ktedonobacterales → Dictyobacteraceae	0.98 %
Dyella	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae → Dyella	0.98 %
Scytonemataceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Scytonemataceae	0.98 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	37.25 %
Unclassified	root	N/A	7.84 %
Dictyobacter	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Ktedonobacteria → Ktedonobacterales → Dictyobacteraceae → Dictyobacter	0.98 %
Brasilonema	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Scytonemataceae → Brasilonema	0.98 %
Dyella	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae → Dyella	0.98 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	37.25 %
Unclassified	root	N/A	7.84 %
Brasilonema sennae	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Scytonemataceae → Brasilonema → Brasilonema sennae	0.98 %
Dictyobacter	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Ktedonobacteria → Ktedonobacterales → Dictyobacteraceae → Dictyobacter	0.98 %
Dyella	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae → Dyella	0.98 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	37.25 %
Unclassified	root	N/A	7.84 %
Brasilonema sennae CENA114	strain	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Scytonemataceae → Brasilonema → Brasilonema sennae → Brasilonema sennae CENA114	0.98 %
Dictyobacter	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Ktedonobacteria → Ktedonobacterales → Dictyobacteraceae → Dictyobacter	0.98 %
Dyella	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae → Dyella	0.98 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2166559005\|cont_contig85404	All Organisms → cellular organisms → Bacteria	646	Open in IMG/M
2189573000\|GPBTN7E01AZAFG	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Ktedonobacteria → Ktedonobacterales → Dictyobacteraceae → Dictyobacter	515	Open in IMG/M
3300002245\|JGIcombinedJ26739_100690149	Not Available	899	Open in IMG/M
3300004479\|Ga0062595_100718895	All Organisms → cellular organisms → Bacteria	806	Open in IMG/M
3300005181\|Ga0066678_10065788	All Organisms → cellular organisms → Bacteria	2108	Open in IMG/M
3300005187\|Ga0066675_10281121	All Organisms → cellular organisms → Bacteria	1199	Open in IMG/M
3300005537\|Ga0070730_10539959	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae → Dyella	747	Open in IMG/M
3300005545\|Ga0070695_101440197	All Organisms → cellular organisms → Bacteria	572	Open in IMG/M
3300005555\|Ga0066692_10738512	All Organisms → cellular organisms → Bacteria	608	Open in IMG/M
3300005841\|Ga0068863_102719076	All Organisms → cellular organisms → Bacteria	503	Open in IMG/M
3300005995\|Ga0066790_10149955	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	998	Open in IMG/M
3300006046\|Ga0066652_101405464	All Organisms → cellular organisms → Bacteria	653	Open in IMG/M
3300006174\|Ga0075014_100767114	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	567	Open in IMG/M
3300006852\|Ga0075433_10641661	All Organisms → cellular organisms → Bacteria	931	Open in IMG/M
3300006881\|Ga0068865_101038537	All Organisms → cellular organisms → Bacteria	719	Open in IMG/M
3300009137\|Ga0066709_101427884	All Organisms → cellular organisms → Bacteria → Acidobacteria	1004	Open in IMG/M
3300009162\|Ga0075423_13096682	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	509	Open in IMG/M
3300009553\|Ga0105249_11684199	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	707	Open in IMG/M
3300009683\|Ga0116224_10253837	All Organisms → cellular organisms → Bacteria	839	Open in IMG/M
3300010046\|Ga0126384_11940599	All Organisms → cellular organisms → Bacteria	562	Open in IMG/M
3300010048\|Ga0126373_10928571	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	935	Open in IMG/M
3300010360\|Ga0126372_11176728	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	790	Open in IMG/M
3300010361\|Ga0126378_10652554	All Organisms → cellular organisms → Bacteria → Acidobacteria	1165	Open in IMG/M
3300010376\|Ga0126381_102115014	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	810	Open in IMG/M
3300010376\|Ga0126381_103683672	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	600	Open in IMG/M
3300010376\|Ga0126381_104172953	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	561	Open in IMG/M
3300010876\|Ga0126361_10306030	All Organisms → cellular organisms → Bacteria → Acidobacteria	536	Open in IMG/M
3300011269\|Ga0137392_10217444	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1567	Open in IMG/M
3300011270\|Ga0137391_11172855	All Organisms → cellular organisms → Bacteria	616	Open in IMG/M
3300012201\|Ga0137365_10030491	All Organisms → cellular organisms → Bacteria → Acidobacteria	4148	Open in IMG/M
3300012205\|Ga0137362_10714893	All Organisms → cellular organisms → Bacteria	861	Open in IMG/M
3300012362\|Ga0137361_10518363	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1095	Open in IMG/M
3300012362\|Ga0137361_11821354	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	526	Open in IMG/M
3300012363\|Ga0137390_11114698	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	738	Open in IMG/M
3300012582\|Ga0137358_10574085	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	757	Open in IMG/M
3300012582\|Ga0137358_10937632	All Organisms → cellular organisms → Bacteria	565	Open in IMG/M
3300012685\|Ga0137397_10898843	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	657	Open in IMG/M
3300012927\|Ga0137416_11141515	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	700	Open in IMG/M
3300012927\|Ga0137416_12211138	All Organisms → cellular organisms → Bacteria	506	Open in IMG/M
3300012929\|Ga0137404_11248894	All Organisms → cellular organisms → Bacteria	684	Open in IMG/M
3300012929\|Ga0137404_12088832	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	529	Open in IMG/M
3300012930\|Ga0137407_11691420	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	603	Open in IMG/M
3300012930\|Ga0137407_12062929	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	544	Open in IMG/M
3300012971\|Ga0126369_11865549	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	690	Open in IMG/M
3300012986\|Ga0164304_11581916	All Organisms → cellular organisms → Bacteria	545	Open in IMG/M
3300016319\|Ga0182033_10297350	All Organisms → cellular organisms → Bacteria	1331	Open in IMG/M
3300016387\|Ga0182040_11168710	All Organisms → cellular organisms → Bacteria	646	Open in IMG/M
3300016404\|Ga0182037_11282749	Not Available	645	Open in IMG/M
3300017822\|Ga0187802_10394542	All Organisms → cellular organisms → Bacteria → Acidobacteria	547	Open in IMG/M
3300017933\|Ga0187801_10169171	All Organisms → cellular organisms → Bacteria	857	Open in IMG/M
3300017966\|Ga0187776_10627804	All Organisms → cellular organisms → Bacteria	752	Open in IMG/M
3300017995\|Ga0187816_10156912	All Organisms → cellular organisms → Bacteria → Acidobacteria	985	Open in IMG/M
3300018012\|Ga0187810_10166400	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	889	Open in IMG/M
3300018012\|Ga0187810_10443571	Not Available	549	Open in IMG/M
3300018058\|Ga0187766_11124534	All Organisms → cellular organisms → Bacteria	565	Open in IMG/M
3300018089\|Ga0187774_11034004	All Organisms → cellular organisms → Bacteria	576	Open in IMG/M
3300019886\|Ga0193727_1130724	Not Available	707	Open in IMG/M
3300019887\|Ga0193729_1123772	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	961	Open in IMG/M
3300020034\|Ga0193753_10001561	All Organisms → cellular organisms → Bacteria	19377	Open in IMG/M
3300020199\|Ga0179592_10170297	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	992	Open in IMG/M
3300020199\|Ga0179592_10461567	All Organisms → cellular organisms → Bacteria	548	Open in IMG/M
3300020579\|Ga0210407_10184867	All Organisms → cellular organisms → Bacteria → Acidobacteria	1616	Open in IMG/M
3300020579\|Ga0210407_10744591	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	758	Open in IMG/M
3300021168\|Ga0210406_10427573	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1057	Open in IMG/M
3300021178\|Ga0210408_10136892	All Organisms → cellular organisms → Bacteria → Acidobacteria	1936	Open in IMG/M
3300021178\|Ga0210408_10145177	All Organisms → cellular organisms → Bacteria	1878	Open in IMG/M
3300021477\|Ga0210398_10300988	All Organisms → cellular organisms → Bacteria	1308	Open in IMG/M
3300021559\|Ga0210409_10049225	All Organisms → cellular organisms → Bacteria	3968	Open in IMG/M
3300021559\|Ga0210409_10209730	All Organisms → cellular organisms → Bacteria	1772	Open in IMG/M
3300024179\|Ga0247695_1006975	All Organisms → cellular organisms → Bacteria → Acidobacteria	1609	Open in IMG/M
3300024246\|Ga0247680_1020820	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	951	Open in IMG/M
3300025915\|Ga0207693_11046414	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	622	Open in IMG/M
3300026326\|Ga0209801_1325127	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Scytonemataceae → Brasilonema → Brasilonema sennae → Brasilonema sennae CENA114	543	Open in IMG/M
3300026467\|Ga0257154_1023659	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	903	Open in IMG/M
3300026529\|Ga0209806_1268153	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	574	Open in IMG/M
3300026895\|Ga0207758_1007405	All Organisms → cellular organisms → Bacteria → Acidobacteria	1174	Open in IMG/M
3300026981\|Ga0207822_1025321	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	640	Open in IMG/M
3300027071\|Ga0209214_1014899	All Organisms → cellular organisms → Bacteria	966	Open in IMG/M
3300027663\|Ga0208990_1129734	All Organisms → cellular organisms → Bacteria	679	Open in IMG/M
3300027853\|Ga0209274_10104254	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1401	Open in IMG/M
3300027884\|Ga0209275_10051262	All Organisms → cellular organisms → Bacteria	1986	Open in IMG/M
3300028792\|Ga0307504_10424319	All Organisms → cellular organisms → Bacteria	528	Open in IMG/M
3300028873\|Ga0302197_10140515	Not Available	1172	Open in IMG/M
3300029951\|Ga0311371_10850259	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1113	Open in IMG/M
3300030494\|Ga0310037_10415598	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	555	Open in IMG/M
3300030687\|Ga0302309_10363033	All Organisms → cellular organisms → Bacteria → Acidobacteria	708	Open in IMG/M
3300031231\|Ga0170824_100547363	Not Available	647	Open in IMG/M
3300031718\|Ga0307474_10512921	Not Available	941	Open in IMG/M
3300031754\|Ga0307475_10336745	All Organisms → cellular organisms → Bacteria → Acidobacteria	1212	Open in IMG/M
3300031821\|Ga0318567_10803091	All Organisms → cellular organisms → Bacteria	533	Open in IMG/M
3300031879\|Ga0306919_10114831	All Organisms → cellular organisms → Bacteria	1918	Open in IMG/M
3300031941\|Ga0310912_10872397	All Organisms → cellular organisms → Bacteria	693	Open in IMG/M
3300031941\|Ga0310912_10994639	All Organisms → cellular organisms → Bacteria	643	Open in IMG/M
3300031942\|Ga0310916_10646365	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	897	Open in IMG/M
3300032052\|Ga0318506_10519586	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	527	Open in IMG/M
3300032064\|Ga0318510_10263991	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	710	Open in IMG/M
3300032076\|Ga0306924_12527278	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	514	Open in IMG/M
3300032174\|Ga0307470_10149535	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1426	Open in IMG/M
3300032180\|Ga0307471_103609150	Not Available	548	Open in IMG/M
3300032782\|Ga0335082_10953875	All Organisms → cellular organisms → Bacteria	721	Open in IMG/M
3300032828\|Ga0335080_11197530	All Organisms → cellular organisms → Bacteria	764	Open in IMG/M
3300032829\|Ga0335070_12075296	All Organisms → cellular organisms → Bacteria	510	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	94.12%
Host-Associated	Host-Associated	4.90%
Engineered	Engineered	0.98%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	88.24%
Aquatic	Environmental → Aquatic	5.88%
Plants	Host-Associated → Plants	4.90%
Modeled	Engineered → Modeled	0.98%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	85.29%
Freshwater	Environmental → Aquatic → Freshwater	4.90%
Peat	Environmental → Terrestrial → Peat	2.94%
Rhizosphere	Host-Associated → Plants → Rhizosphere	2.94%
Rhizoplane	Host-Associated → Plants → Rhizoplane	1.96%
Sediment	Environmental → Aquatic → Sediment	0.98%
Simulated Communities (Sequence Read Mixture)	Engineered → Modeled → Simulated Communities (Sequence Read Mixture)	0.98%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	69.61%
Loam	Environmental → Terrestrial → Soil → Loam	8.82%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	6.86%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	4.90%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	2.94%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	2.94%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	1.96%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.98%
Unclassified	Engineered → Modeled → Simulated Communities (Sequence Read Mixture) → Unclassified	0.98%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	34.31%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	26.47%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	7.84%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	6.86%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	5.88%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	4.90%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	2.94%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	2.94%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	1.96%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	1.96%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.98%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.98%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	0.98%
Unclassified	Engineered → Modeled → Simulated Communities (Sequence Read Mixture) → Unclassified → Unclassified	0.98%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	17.65%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	16.67%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	7.84%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	5.88%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	4.90%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	4.90%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	4.90%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	3.92%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	2.94%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	2.94%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	2.94%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	1.96%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	1.96%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	1.96%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.96%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	1.96%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	1.96%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.98%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.98%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.98%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.98%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil	0.98%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.98%
Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Soil	0.98%
Bog	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog	0.98%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.98%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.98%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.98%
Simulated	Engineered → Modeled → Simulated Communities (Sequence Read Mixture) → Unclassified → Unclassified → Simulated	0.98%
Boreal Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil	0.98%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2166559005	Simulated microbial communities from Lyon, France	Engineered	Open in IMG/M
2189573000	Grass soil microbial communities from Rothamsted Park, UK - July 2010 direct MP BIO 1O1 lysis 0-21cm (T0 for microcosms)	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300005181	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_127	Environmental	Open in IMG/M
3300005187	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124	Environmental	Open in IMG/M
3300005537	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1	Environmental	Open in IMG/M
3300005545	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG	Environmental	Open in IMG/M
3300005555	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_141	Environmental	Open in IMG/M
3300005841	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2	Host-Associated	Open in IMG/M
3300005995	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 3 DNA2013-050	Environmental	Open in IMG/M
3300006046	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101	Environmental	Open in IMG/M
3300006174	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2014	Environmental	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006881	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2	Host-Associated	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300009683	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_b_LC metaG	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010876	Boreal forest soil eukaryotic communities from Alaska, USA - W5-5 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300011269	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaG	Environmental	Open in IMG/M
3300011270	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG	Environmental	Open in IMG/M
3300012201	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012363	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG	Environmental	Open in IMG/M
3300012582	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaG	Environmental	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300012986	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MG	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300017822	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_2	Environmental	Open in IMG/M
3300017933	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_1	Environmental	Open in IMG/M
3300017966	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP12_20_MG	Environmental	Open in IMG/M
3300017995	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_1	Environmental	Open in IMG/M
3300018012	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_5	Environmental	Open in IMG/M
3300018058	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_20_MG	Environmental	Open in IMG/M
3300018089	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP05_20_MG	Environmental	Open in IMG/M
3300019886	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2c2	Environmental	Open in IMG/M
3300019887	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1c2	Environmental	Open in IMG/M
3300020034	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H1c2	Environmental	Open in IMG/M
3300020199	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021477	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-O	Environmental	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300024179	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK36	Environmental	Open in IMG/M
3300024246	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK21	Environmental	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300026326	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_127 (SPAdes)	Environmental	Open in IMG/M
3300026467	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DW-16-A	Environmental	Open in IMG/M
3300026529	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_152 (SPAdes)	Environmental	Open in IMG/M
3300026895	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 12 (SPAdes)	Environmental	Open in IMG/M
3300026981	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 67 (SPAdes)	Environmental	Open in IMG/M
3300027071	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM1H0_M2 (SPAdes)	Environmental	Open in IMG/M
3300027663	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA Ref_M3 (SPAdes)	Environmental	Open in IMG/M
3300027853	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1 (SPAdes)	Environmental	Open in IMG/M
3300027884	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2 (SPAdes)	Environmental	Open in IMG/M
3300028792	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 19_S	Environmental	Open in IMG/M
3300028873	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_N2_1	Environmental	Open in IMG/M
3300029951	III_Palsa_N1 coassembly	Environmental	Open in IMG/M
3300030494	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_3_AS metaG (v2)	Environmental	Open in IMG/M
3300030687	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_N1_1	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031718	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05	Environmental	Open in IMG/M
3300031754	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515	Environmental	Open in IMG/M
3300031821	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f20	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300032052	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f19	Environmental	Open in IMG/M
3300032064	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f17	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032782	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.1	Environmental	Open in IMG/M
3300032828	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.4	Environmental	Open in IMG/M
3300032829	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.3	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
cont_0404.00005580	2166559005	Simulated	HTKKGKPYVHRERFTDTWIKHDQTWQCVASHATLIPSK
N55_03473490	2189573000	Grass Soil	KGKPYVHRERFTDTWIKHDQSWQCVASHATLIPSK
JGIcombinedJ26739_1006901491	3300002245	Forest Soil	IFRVKGVEKGKPYVHRERFVDTWIKTNGTWQCVATTGTLITAKQQPAD*
Ga0062595_1007188952	3300004479	Soil	GKEKGKPYVRRERFADTWIKIHGTWQCVATTSTLIAAKHVAD*
Ga0066678_100657881	3300005181	Soil	RVKGMEKGKPYVHRERFIDTWIKQSQTWQCVASSATLISAK*
Ga0066675_102811211	3300005187	Soil	VVVGIFRIKGMEKGKPYVHRERFTDTWIKVDQGWQCVASQATLIAAK*
Ga0070730_105399591	3300005537	Surface Soil	GIFRVKGVEKGKPYVHRERFIDTWIKRDQGWQCVASSATLITAK*
Ga0070695_1014401971	3300005545	Corn, Switchgrass And Miscanthus Rhizosphere	VVGVFRVKGKEKGKPYVRRERFADTWIKIHGTWQCVATTSTLIAAKQAAD*
Ga0066692_107385122	3300005555	Soil	AVVVGIFRVKGMEKGKPYVHRERFIDTWIKQSQTWQCVASSATLISAK*
Ga0068863_1027190762	3300005841	Switchgrass Rhizosphere	GIEKGKPYVHRERFIDTWIKQNQTWQCVASSATLITTK*
Ga0066790_101499551	3300005995	Soil	KGKSYVHRERFVDTWVKMNGTWQCVATTAALIPAKQAAD*
Ga0066652_1014054642	3300006046	Soil	VSGIFRVKGVEKGKPYVHRERFIDTWIKQDQTWQCVASSATLISAK*
Ga0075014_1007671141	3300006174	Watersheds	VVGIFRTKGTDNGKTYTRRERFVDTWIKTNGSWQCVATTSALIPSKQAAD*
Ga0075433_106416611	3300006852	Populus Rhizosphere	GKPYVHRERFIDTWIKQNQGWQCVASSATLITAK*
Ga0068865_1010385371	3300006881	Miscanthus Rhizosphere	EKGKPYVRRERFADTWIKIHGTWQCVATTSTLIAAKQAAD*
Ga0066709_1014278842	3300009137	Grasslands Soil	GVEKGKPYVHRERFIDTWIKQDQTWQCVASSATLISAK*
Ga0075423_130966821	3300009162	Populus Rhizosphere	KGKPYVHRERFIDTWIKRGQGWQCVASSATLITAK*
Ga0105249_116841991	3300009553	Switchgrass Rhizosphere	VVGIFRIKGVEKGKSYVRRERFIDTWIKQNQGWQCVASAATSITTK*
Ga0116224_102538372	3300009683	Peatlands Soil	AVVVGVFRVKGTEKGKAYLHRERFVDTWIKINGTWQCVATTSTLMTAK*
Ga0126384_119405991	3300010046	Tropical Forest Soil	EKGKPYVHRERFIDTWIKQNQSWQCVASSATLITAK*
Ga0126373_109285711	3300010048	Tropical Forest Soil	KGTDRGKPFVHRERFVDTWIKSNRAWQCVATTSTLITAKQAD*
Ga0126372_111767282	3300010360	Tropical Forest Soil	KGVEKGKPYVHRERFIDTWIRRDGGWQCVASAATLITAK*
Ga0126378_106525541	3300010361	Tropical Forest Soil	KGKPYVHRERFVDTWVKISGRWQCVATTSALITGKQPAD*
Ga0126381_1021150142	3300010376	Tropical Forest Soil	KGTDKGKPFVHRERFVDTWIKSNRAWQCVATTSTLITAKQAD*
Ga0126381_1036836721	3300010376	Tropical Forest Soil	KGMEKGKPYVHRERFIDTWIKQNQGWQCVASSATLITTK*
Ga0126381_1041729531	3300010376	Tropical Forest Soil	GMEKGKPYVHRERFIDTWIKQNQGWQCVASSATLITTK*
Ga0126361_103060301	3300010876	Boreal Forest Soil	RIKGMEKGKSYARRERFVDTWIKINGAWQCVATTSTLITAK*
Ga0137392_102174443	3300011269	Vadose Zone Soil	TEKGKPYVHRERFVDTWIKLNGTWQCVATTGTLITAKPGAN*
Ga0137391_111728551	3300011270	Vadose Zone Soil	GTEKGKPYVHRERFVDTWIKINGTWQCVATTGTLITAKPGAN*
Ga0137365_100304914	3300012201	Vadose Zone Soil	AVVVGIFRVKGTEKGKPYVHRERFVDTWIKVNGTWQCVATTSTLISTKQAAD*
Ga0137362_107148931	3300012205	Vadose Zone Soil	KGTENGKPYVRRERFTDMWIKINEAWQCVASQTTLIPPK*
Ga0137361_105183633	3300012362	Vadose Zone Soil	VGVFRIKGTEKGKPYVHRERFLDTWIKVRGTWQCVATTSTLITAK*
Ga0137361_118213541	3300012362	Vadose Zone Soil	AAVVVGVFRIKGTEKGKPYVRRERFVDTWIKLHGTWQCVATTSTLIAAK*
Ga0137390_111146981	3300012363	Vadose Zone Soil	VVGTFRVKGTEKGKPYVHRERFVDTWIKMNGTWQCVATTGTLITPK*
Ga0137358_105740852	3300012582	Vadose Zone Soil	DVAVVVGVFRIKGTEKGKPYVRRERFVDTWIKLHGTWQCVATTSTLIAAK*
Ga0137358_109376322	3300012582	Vadose Zone Soil	ENGKPYVRRERFTDMWIKINEAWQCVASQTTLIPSK*
Ga0137397_108988431	3300012685	Vadose Zone Soil	IKGTEKGKPYVHRERFVDTWIKVRGTRQCVATTSTLITAK*
Ga0137416_111415151	3300012927	Vadose Zone Soil	TENNKPYTRRERFTDTWIKFNQTWQCVASQTTLIPSK*
Ga0137416_122111382	3300012927	Vadose Zone Soil	VGTFRVKGTEKGKPYVHRERFVDTWIKINGTWQCVATTGTLITAKPGAN*
Ga0137404_112488942	3300012929	Vadose Zone Soil	VVVGVFRIKGTEKGKPYVRRERFLDTWIKVRGTWQCVATTSTLITAK*
Ga0137404_120888321	3300012929	Vadose Zone Soil	VGVFRIKGTEKGKPYVRRERFLDTWIKFHGTWQCVATTSTLITAK*
Ga0137407_116914202	3300012930	Vadose Zone Soil	EKGKPYVRRERFVDTWIKLHGTWQCVATTSTLIAAK*
Ga0137407_120629291	3300012930	Vadose Zone Soil	GKPYVHRERFTDTWIKYDQTWKCVASQATLIAAK*
Ga0126369_118655491	3300012971	Tropical Forest Soil	IKGVEKGKPYVHRERFIDTWIRQNQGWQCVASSATLITGK*
Ga0164304_115819162	3300012986	Soil	TFRVRGTENGKPYARRERFTDTWIKINEAWQCVASQATLIPPK*
Ga0182033_102973503	3300016319	Soil	IFRVKGTEKGKSYVHRERFIDTWIKHDRSWQCVASSATLITTK
Ga0182040_111687101	3300016387	Soil	IKGTDKGKAFSHRERFVDTWVESNGAWQCVATTSNLIATRPAGEPATQP
Ga0182037_112827492	3300016404	Soil	SYVHRERFVDTWIKINGTWQCVATTAALIPAKQPAD
Ga0187802_103945422	3300017822	Freshwater Sediment	VKGVEKGKAFVHRERFVDTWIKNNGAWQCVATTAAPMSAKQPTD
Ga0187801_101691712	3300017933	Freshwater Sediment	AMVGVFRVKGTEKGKPFVHRERFVDTWIKTNGAWQCVATTSALITAKQPAE
Ga0187776_106278041	3300017966	Tropical Peatland	AAVVVGIFRVKGTDKGKSYVHRERFVDTWIKINGTWQCVATTAALITAKAATD
Ga0187816_101569122	3300017995	Freshwater Sediment	IKGVEKGKAFVHRERFVDTWIKNNGAWQCVATTAAPMSAKQPTD
Ga0187810_101664001	3300018012	Freshwater Sediment	DKGKAYVHRERFVDTCIKINGTWQCVATTAALIAGKQAAD
Ga0187810_104435712	3300018012	Freshwater Sediment	VVHRERFVDTWIKNNGAWQCVATTAAPMSAKQPTD
Ga0187766_111245342	3300018058	Tropical Peatland	DKGKAYVHRERFVDTWIKTNGVWQCVATTSALITTKAE
Ga0187774_110340042	3300018089	Tropical Peatland	VVVGIFRVKGTEKGKPFLHRERFVDTWIKIDGAWKCVATTSALITAKPSGD
Ga0193727_11307241	3300019886	Soil	AVVVGVFRIKGTEKGKPYVRRERFVDTWIKLNGTWQCLATTSTLITGK
Ga0193729_11237721	3300019887	Soil	FRIKGIEKGKPYVHRERFTDTWIKHDQTWQCVASQATLIPSK
Ga0193753_1000156120	3300020034	Soil	TENNKPYVRRERFTDTWIKFNETWQCVASQTTLIPSK
Ga0179592_101702972	3300020199	Vadose Zone Soil	TEKGKPYVHRERFVDTWIKINGTWQCVATTGTLITAKPGAN
Ga0179592_104615672	3300020199	Vadose Zone Soil	AEKGKPYVHRERFVDTWIKLNGTWQCVATTGTLIAAKPGAN
Ga0210407_101848671	3300020579	Soil	GIFRIKGTEKGKPYVRRERFVDTWVKFDGMWQCVATTSALITAKQQPAD
Ga0210407_107445911	3300020579	Soil	VKGTEKGKPYVHRERFVDTWIKLNGTWQCVATTSTLITSKQGAD
Ga0210406_104275732	3300021168	Soil	RIKGMEKGKSYARRERFVDTWIKINGAWQCVATTSTLITAK
Ga0210408_101368925	3300021178	Soil	IKGMEKGKSYAHRERFVDTWIKISGAWQCVATTSTLITAK
Ga0210408_101451774	3300021178	Soil	GMEKGKAYVHRERFVDTWIKSNGTWQCVATTGTLITTKQQPAN
Ga0210398_103009882	3300021477	Soil	VKGMEKGKPYVHRERFVDTWIKTKGTWQCVATTGTLITTKQQPAD
Ga0210409_100492256	3300021559	Soil	VKGMEKGKPYVHRERFVDTWIKTKGTWQCVATTGTLITAKQQPAD
Ga0210409_102097301	3300021559	Soil	KGTEKGKPYVNRERFVDTWIKLKGTWQCVATTSTLITAK
Ga0247695_10069753	3300024179	Soil	KGTEKGKAYVHRERFIDTWIKQNQAWQCVASTATLITAK
Ga0247680_10208201	3300024246	Soil	VKGTEKGKAYVHRERFIDTWIKQNQAWQCVASTATLITAK
Ga0207693_110464141	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	KGKPYVRRERFADTWIKIHGTWQCVATTSTLIAAKQAAD
Ga0209801_13251271	3300026326	Soil	AVVVGIFRVKGMEKGKPYVHRERFIDTWIKQSQTWQCVASSATLISAK
Ga0257154_10236591	3300026467	Soil	MEKGKPYVHRERFVDTWIKTNGTWQCVATTSTLISGKQPSAD
Ga0209806_12681531	3300026529	Soil	VFRIKGTEKGKPYVHRERFLDTWIKVRGTWQCVATTSTLITAK
Ga0207758_10074051	3300026895	Tropical Forest Soil	PFVHRERFVDTWIKNNDAWQCVATTSTLITTKQAD
Ga0207822_10253211	3300026981	Tropical Forest Soil	VVGIFRVKGTDKGKPFVHRERFVDTWIKNNDAWQCVATTSTLITTKQAD
Ga0209214_10148991	3300027071	Forest Soil	KGKPYVHRERFTDTWIKHDQTWQCVASHSTLIPSK
Ga0208990_11297341	3300027663	Forest Soil	VVGIFRIKGTENGKPYVHRERFSDTWIKQNQTWQCVASQSTLITAK
Ga0209274_101042541	3300027853	Soil	KGTEKGKPYVHRERFVDTWIKLNGTWQCVATTSTLITAK
Ga0209275_100512623	3300027884	Soil	KGMEKGKPYVHRERFVDTWIKINGTWQCVATTGTLIAAKQQPAD
Ga0307504_104243192	3300028792	Soil	TENGKPYVRRERFTDTWIKLNETWQCVASQTTLIPGK
Ga0302197_101405151	3300028873	Bog	RGTDHGRPYVRRGRFIDTWIFEDQGWHCVASQATPILR
Ga0311371_108502592	3300029951	Palsa	YENAAVVVGVLRIKGTEKGKRYVHRERFVDTWIKLNTNWQCIATTSTLITAK
Ga0310037_104155981	3300030494	Peatlands Soil	AVVVGVFRVKGTEKGKAYLHRERFVDTWIKINGTWQCVATTSTLMTAK
Ga0302309_103630331	3300030687	Palsa	EKGKRYVHRERFVDTWIKLNTNWQCIATTSTLITAK
Ga0170824_1005473632	3300031231	Forest Soil	GKPYVRRERFVDTWIKTNGTWQCVATTSALITAKQPGD
Ga0307474_105129212	3300031718	Hardwood Forest Soil	VHRERFVDTWIKSKGTWECVATTGTLITAKPQPAD
Ga0307475_103367451	3300031754	Hardwood Forest Soil	KGKPYTHRERFVDTWIKMNGTWQCVVTTSTLITAK
Ga0318567_108030911	3300031821	Soil	PYVHRERFVDTWIKTNDSWQCVATTSTLLSGKPAD
Ga0306919_101148314	3300031879	Soil	VVGIFRVKGTEKGKPYVHRERFVDTWIKVNGTWQCVATTSTLITAKPSAH
Ga0310912_108723971	3300031941	Soil	GIFRIKGTDKGKPYVHRERFVDTWIKTNDSWQCVATTSTLLSGKPAD
Ga0310912_109946392	3300031941	Soil	FRVKGVEKGKSYVHRERFIDTWIKQNQGWQCVASSATLITTK
Ga0310916_106463651	3300031942	Soil	VKGVEKGKPYVHRERFIDTWIKHDQSWQCVASSATLITPK
Ga0318506_105195861	3300032052	Soil	TDKGKPFVHRERFVDTWIKSNRAWQCVATTSTLITAKQAD
Ga0318510_102639911	3300032064	Soil	DRGKPFVHRERFVDTWIKSNRAWQCVATTSTLITAKQAD
Ga0306924_125272781	3300032076	Soil	GKPFVHRERFVDTWIKSNRAWQCVATTSTLITAKQAD
Ga0307470_101495353	3300032174	Hardwood Forest Soil	IKGVEKGKPYVHRERFTDTWIKNGQSWQCVASQATLITAK
Ga0307471_1036091501	3300032180	Hardwood Forest Soil	GVFRIKGTEKGKPYVHRERFVDTWIKLHGTWQCVATTSTLITAK
Ga0335082_109538752	3300032782	Soil	RIKGTDKGKAYVRRERFVDTWIKTNGAWQCVATTSALITSKAD
Ga0335080_111975301	3300032828	Soil	AVVVGIFRVKGTEKGRPFVHRERFVDTWIKVNESWQCVATTSALITAKPSAD
Ga0335070_120752961	3300032829	Soil	FRVKGMDKGKPYMHRERFVDTWIKINGTWQCVATTAALITAKQPAD

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F101671

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences