Metagenome / Metatranscriptome Family F101650

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F101650
Family Type	Metagenome / Metatranscriptome
Number of Sequences	102
Average Sequence Length	96 residues
Representative Sequence	MRLAVPQKAQPVRTEQIILFRASTQVFAISSASVQEVRSVDSLAGVAVEINEASLAKVRHALRRGERNLYVVNAALHFGLRPSPASLIFLL
Number of Associated Samples	87
Number of Associated Scaffolds	102

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	99.01 %
% of genes near scaffold ends (potentially truncated)	99.02 %
% of genes from short scaffolds (< 2000 bps)	88.24 %
Associated GOLD sequencing projects	84
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.29

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Bacteria (98.039 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (25.490 % of family members)
Environment Ontology (ENVO)	Unclassified (29.412 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (55.882 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 0.00% β-sheet: 34.45% Coil/Unstructured: 65.55%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.29
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.29
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 102 Family Scaffolds
PF01339	CheB_methylest	86.27
PF00072	Response_reg	4.90
PF01584	CheW	2.94
PF00015	MCPsignal	0.98
PF02895	H-kinase_dim	0.98
PF07969	Amidohydro_3	0.98

COG ID	Name	Functional Category	% Frequency in 102 Family Scaffolds
COG2201	Chemotaxis response regulator CheB, contains REC and protein-glutamate methylesterase domains	Signal transduction mechanisms [T]	172.55
COG0643	Chemotaxis protein histidine kinase CheA	Signal transduction mechanisms [T]	1.96
COG0840	Methyl-accepting chemotaxis protein (MCP)	Signal transduction mechanisms [T]	1.96

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	98.04 %
Unclassified	root	N/A	1.96 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	98.04 %
Unclassified	root	N/A	1.96 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	98.04 %
Unclassified	root	N/A	1.96 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	13.73 %
Unclassified	root	N/A	1.96 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.98 %
environmental samples	no rank	All Organisms → cellular organisms → Bacteria → environmental samples	0.98 %

Name	Rank	Taxonomy	Distribution
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	12.75 %
Unclassified	root	N/A	1.96 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.98 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	0.98 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	12.75 %
Unclassified	root	N/A	1.96 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.98 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	0.98 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	12.75 %
Unclassified	root	N/A	1.96 %
Corynebacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	0.98 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	0.98 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	12.75 %
Unclassified	root	N/A	1.96 %
Mycobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae	0.98 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	0.98 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	12.75 %
Unclassified	root	N/A	1.96 %
Mycobacterium	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium	0.98 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	0.98 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	12.75 %
Unclassified	root	N/A	1.96 %
unclassified Mycobacterium	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → unclassified Mycobacterium	0.98 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	0.98 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	12.75 %
Unclassified	root	N/A	1.96 %
Mycobacterium sp. QGD 101	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → unclassified Mycobacterium → Mycobacterium sp. QGD 101	0.98 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	0.98 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2170459005\|F1BAP7Q02F3CAA	All Organisms → cellular organisms → Bacteria	502	Open in IMG/M
3300004152\|Ga0062386_101037283	All Organisms → cellular organisms → Bacteria	680	Open in IMG/M
3300005332\|Ga0066388_100397724	All Organisms → cellular organisms → Bacteria	2023	Open in IMG/M
3300005602\|Ga0070762_10200186	All Organisms → cellular organisms → Bacteria	1222	Open in IMG/M
3300005602\|Ga0070762_10869091	All Organisms → cellular organisms → Bacteria	613	Open in IMG/M
3300005610\|Ga0070763_10752612	All Organisms → cellular organisms → Bacteria	573	Open in IMG/M
3300005764\|Ga0066903_104683039	All Organisms → cellular organisms → Bacteria	728	Open in IMG/M
3300005921\|Ga0070766_11169715	All Organisms → cellular organisms → Bacteria	532	Open in IMG/M
3300005995\|Ga0066790_10166415	All Organisms → cellular organisms → Bacteria	943	Open in IMG/M
3300006052\|Ga0075029_101176619	All Organisms → cellular organisms → Bacteria	535	Open in IMG/M
3300006175\|Ga0070712_100205685	All Organisms → cellular organisms → Bacteria	1549	Open in IMG/M
3300006939\|Ga0081244_1197169	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → unclassified Mycobacterium → Mycobacterium sp. QGD 101	513	Open in IMG/M
3300007255\|Ga0099791_10482000	All Organisms → cellular organisms → Bacteria	601	Open in IMG/M
3300010048\|Ga0126373_10033066	All Organisms → cellular organisms → Bacteria	4491	Open in IMG/M
3300010048\|Ga0126373_10701745	All Organisms → cellular organisms → Bacteria	1070	Open in IMG/M
3300010366\|Ga0126379_10015138	All Organisms → cellular organisms → Bacteria	5596	Open in IMG/M
3300010366\|Ga0126379_10508377	All Organisms → cellular organisms → Bacteria	1277	Open in IMG/M
3300011269\|Ga0137392_10996935	All Organisms → cellular organisms → Bacteria	688	Open in IMG/M
3300012922\|Ga0137394_10139269	All Organisms → cellular organisms → Bacteria	2061	Open in IMG/M
3300012971\|Ga0126369_10099516	All Organisms → cellular organisms → Bacteria	2628	Open in IMG/M
3300012971\|Ga0126369_12531278	All Organisms → cellular organisms → Bacteria	598	Open in IMG/M
3300014168\|Ga0181534_10535326	All Organisms → cellular organisms → Bacteria	667	Open in IMG/M
3300014199\|Ga0181535_10225628	All Organisms → cellular organisms → Bacteria	1139	Open in IMG/M
3300014200\|Ga0181526_10915369	All Organisms → cellular organisms → Bacteria	551	Open in IMG/M
3300016319\|Ga0182033_10956631	All Organisms → cellular organisms → Bacteria	760	Open in IMG/M
3300016371\|Ga0182034_11967847	All Organisms → cellular organisms → Bacteria	516	Open in IMG/M
3300016387\|Ga0182040_10834632	All Organisms → cellular organisms → Bacteria	761	Open in IMG/M
3300016422\|Ga0182039_10527444	All Organisms → cellular organisms → Bacteria	1023	Open in IMG/M
3300017822\|Ga0187802_10161646	All Organisms → cellular organisms → Bacteria	857	Open in IMG/M
3300017823\|Ga0187818_10129701	All Organisms → cellular organisms → Bacteria	1094	Open in IMG/M
3300017823\|Ga0187818_10525550	All Organisms → cellular organisms → Bacteria	532	Open in IMG/M
3300017942\|Ga0187808_10122402	Not Available	1138	Open in IMG/M
3300017943\|Ga0187819_10785794	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	535	Open in IMG/M
3300017946\|Ga0187879_10732204	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	551	Open in IMG/M
3300017955\|Ga0187817_11007155	All Organisms → cellular organisms → Bacteria	534	Open in IMG/M
3300017974\|Ga0187777_10881023	All Organisms → cellular organisms → Bacteria	643	Open in IMG/M
3300017975\|Ga0187782_10061077	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2745	Open in IMG/M
3300017975\|Ga0187782_10170442	All Organisms → cellular organisms → Bacteria	1624	Open in IMG/M
3300017995\|Ga0187816_10063782	All Organisms → cellular organisms → Bacteria	1554	Open in IMG/M
3300018006\|Ga0187804_10077781	All Organisms → cellular organisms → Bacteria	1337	Open in IMG/M
3300018006\|Ga0187804_10300179	All Organisms → cellular organisms → Bacteria	700	Open in IMG/M
3300018012\|Ga0187810_10433003	All Organisms → cellular organisms → Bacteria	556	Open in IMG/M
3300018047\|Ga0187859_10063875	All Organisms → cellular organisms → Bacteria	1940	Open in IMG/M
3300018058\|Ga0187766_11213503	All Organisms → cellular organisms → Bacteria	546	Open in IMG/M
3300018060\|Ga0187765_11038524	All Organisms → cellular organisms → Bacteria	565	Open in IMG/M
3300018064\|Ga0187773_10030352	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2379	Open in IMG/M
3300020150\|Ga0187768_1088188	All Organisms → cellular organisms → Bacteria	703	Open in IMG/M
3300020580\|Ga0210403_10226507	All Organisms → cellular organisms → Bacteria	1533	Open in IMG/M
3300020580\|Ga0210403_10372357	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1168	Open in IMG/M
3300020580\|Ga0210403_11025670	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	644	Open in IMG/M
3300020583\|Ga0210401_11194688	All Organisms → cellular organisms → Bacteria	619	Open in IMG/M
3300021168\|Ga0210406_11258861	All Organisms → cellular organisms → Bacteria	535	Open in IMG/M
3300021170\|Ga0210400_11578270	All Organisms → cellular organisms → Bacteria	518	Open in IMG/M
3300021401\|Ga0210393_10270550	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1379	Open in IMG/M
3300021404\|Ga0210389_10017473	All Organisms → cellular organisms → Bacteria → Acidobacteria	5545	Open in IMG/M
3300021407\|Ga0210383_10534732	All Organisms → cellular organisms → Bacteria	1012	Open in IMG/M
3300021420\|Ga0210394_10454655	All Organisms → cellular organisms → Bacteria	1127	Open in IMG/M
3300021559\|Ga0210409_10983680	All Organisms → cellular organisms → Bacteria	718	Open in IMG/M
3300021560\|Ga0126371_10636406	All Organisms → cellular organisms → Bacteria	1215	Open in IMG/M
3300025929\|Ga0207664_11767203	All Organisms → cellular organisms → Bacteria	541	Open in IMG/M
3300026304\|Ga0209240_1135258	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	809	Open in IMG/M
3300026551\|Ga0209648_10190966	All Organisms → cellular organisms → Bacteria	1574	Open in IMG/M
3300026859\|Ga0207859_1007642	All Organisms → cellular organisms → Bacteria	990	Open in IMG/M
3300027330\|Ga0207777_1028331	All Organisms → cellular organisms → Bacteria	1037	Open in IMG/M
3300027330\|Ga0207777_1083400	All Organisms → cellular organisms → Bacteria	555	Open in IMG/M
3300027701\|Ga0209447_10161971	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	615	Open in IMG/M
3300027703\|Ga0207862_1103883	All Organisms → cellular organisms → Bacteria	854	Open in IMG/M
3300027703\|Ga0207862_1115111	All Organisms → cellular organisms → Bacteria	808	Open in IMG/M
3300027889\|Ga0209380_10201874	All Organisms → cellular organisms → Bacteria	1168	Open in IMG/M
3300031128\|Ga0170823_13988230	All Organisms → cellular organisms → Bacteria	1012	Open in IMG/M
3300031561\|Ga0318528_10521357	All Organisms → cellular organisms → Bacteria	638	Open in IMG/M
3300031679\|Ga0318561_10085158	All Organisms → cellular organisms → Bacteria	1642	Open in IMG/M
3300031719\|Ga0306917_11289836	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	565	Open in IMG/M
3300031724\|Ga0318500_10169613	All Organisms → cellular organisms → Bacteria	1035	Open in IMG/M
3300031770\|Ga0318521_10734559	All Organisms → cellular organisms → Bacteria	600	Open in IMG/M
3300031771\|Ga0318546_10825867	All Organisms → cellular organisms → Bacteria	652	Open in IMG/M
3300031781\|Ga0318547_10273528	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1022	Open in IMG/M
3300031890\|Ga0306925_10829034	All Organisms → cellular organisms → Bacteria	957	Open in IMG/M
3300031890\|Ga0306925_11082700	All Organisms → cellular organisms → Bacteria	811	Open in IMG/M
3300031912\|Ga0306921_11227805	All Organisms → cellular organisms → Bacteria	833	Open in IMG/M
3300031941\|Ga0310912_10666906	All Organisms → cellular organisms → Bacteria	807	Open in IMG/M
3300031946\|Ga0310910_11105988	All Organisms → cellular organisms → Bacteria	617	Open in IMG/M
3300032001\|Ga0306922_12314626	All Organisms → cellular organisms → Bacteria	515	Open in IMG/M
3300032008\|Ga0318562_10828785	All Organisms → cellular organisms → Bacteria	529	Open in IMG/M
3300032035\|Ga0310911_10516120	All Organisms → cellular organisms → Bacteria	693	Open in IMG/M
3300032035\|Ga0310911_10671800	All Organisms → cellular organisms → Bacteria	600	Open in IMG/M
3300032076\|Ga0306924_10780957	All Organisms → cellular organisms → Bacteria	1066	Open in IMG/M
3300032076\|Ga0306924_10988850	All Organisms → cellular organisms → Bacteria	924	Open in IMG/M
3300032089\|Ga0318525_10293514	All Organisms → cellular organisms → Bacteria	835	Open in IMG/M
3300032089\|Ga0318525_10459928	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	652	Open in IMG/M
3300032094\|Ga0318540_10455565	All Organisms → cellular organisms → Bacteria	618	Open in IMG/M
3300032180\|Ga0307471_102421305	All Organisms → cellular organisms → Bacteria	663	Open in IMG/M
3300032261\|Ga0306920_100464199	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	1881	Open in IMG/M
3300032782\|Ga0335082_10774658	All Organisms → cellular organisms → Bacteria	821	Open in IMG/M
3300032829\|Ga0335070_10032650	All Organisms → cellular organisms → Bacteria	5897	Open in IMG/M
3300032892\|Ga0335081_10679623	All Organisms → cellular organisms → Bacteria	1253	Open in IMG/M
3300032895\|Ga0335074_10212962	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2334	Open in IMG/M
3300033158\|Ga0335077_11110752	All Organisms → cellular organisms → Bacteria	780	Open in IMG/M
3300033289\|Ga0310914_10107897	All Organisms → cellular organisms → Bacteria	2406	Open in IMG/M
3300033755\|Ga0371489_0326796	All Organisms → cellular organisms → Bacteria	730	Open in IMG/M
3300033982\|Ga0371487_0428180	All Organisms → cellular organisms → Bacteria	567	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	82.35%
Aquatic	Environmental → Aquatic	17.65%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	80.39%
Freshwater	Environmental → Aquatic → Freshwater	16.67%
Peat	Environmental → Terrestrial → Peat	1.96%
Sediment	Environmental → Aquatic → Sediment	0.98%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	52.94%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	16.67%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	13.73%
Loam	Environmental → Terrestrial → Soil → Loam	13.73%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	1.96%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.98%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	39.22%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	12.75%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	11.76%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	9.80%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	9.80%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	6.86%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	2.94%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	1.96%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	1.96%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.98%
Tropical Rainforest	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest	0.98%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	0.98%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	25.49%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	11.76%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	9.80%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	6.86%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	6.86%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	6.86%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	4.90%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	4.90%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	2.94%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	2.94%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	1.96%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	1.96%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	1.96%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	1.96%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.98%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil	0.98%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.98%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.98%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	0.98%
Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Soil	0.98%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.98%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.98%
Tropical Rainforest Soil	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest → Tropical Rainforest Soil	0.98%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2170459005	Grass soil microbial communities from Rothamsted Park, UK - July 2009 direct MP BIO1O1 lysis 0-21cm	Environmental	Open in IMG/M
3300004152	Coassembly of ECP12_OM1, ECP12_OM2, ECP12_OM3	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005602	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2	Environmental	Open in IMG/M
3300005610	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005921	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6	Environmental	Open in IMG/M
3300005995	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 3 DNA2013-050	Environmental	Open in IMG/M
3300006052	Freshwater sediment microbial communities from North America - Little Laurel Run_MetaG_LLR_2013	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006939	Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome F II A10 (Metagenome Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300007255	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010343	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM1	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300011269	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaG	Environmental	Open in IMG/M
3300012922	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300014168	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin17_10_metaG	Environmental	Open in IMG/M
3300014199	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin17_30_metaG	Environmental	Open in IMG/M
3300014200	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin06_30_metaG	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300017822	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_2	Environmental	Open in IMG/M
3300017823	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_3	Environmental	Open in IMG/M
3300017942	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_3	Environmental	Open in IMG/M
3300017943	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_4	Environmental	Open in IMG/M
3300017946	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_10	Environmental	Open in IMG/M
3300017955	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_2	Environmental	Open in IMG/M
3300017974	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_10_MG	Environmental	Open in IMG/M
3300017975	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300017995	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_1	Environmental	Open in IMG/M
3300018006	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_4	Environmental	Open in IMG/M
3300018012	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_5	Environmental	Open in IMG/M
3300018047	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_10	Environmental	Open in IMG/M
3300018058	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_20_MG	Environmental	Open in IMG/M
3300018060	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_10_MG	Environmental	Open in IMG/M
3300018064	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP05_10_MG	Environmental	Open in IMG/M
3300020150	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP10_20_MG	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021170	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M	Environmental	Open in IMG/M
3300021401	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O	Environmental	Open in IMG/M
3300021404	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-O	Environmental	Open in IMG/M
3300021407	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300025929	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300026304	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_80cm (SPAdes)	Environmental	Open in IMG/M
3300026551	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)	Environmental	Open in IMG/M
3300026859	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 25 (SPAdes)	Environmental	Open in IMG/M
3300027330	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 35 (SPAdes)	Environmental	Open in IMG/M
3300027701	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP04_OM3 (SPAdes)	Environmental	Open in IMG/M
3300027703	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 81 (SPAdes)	Environmental	Open in IMG/M
3300027889	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6 (SPAdes)	Environmental	Open in IMG/M
3300031128	Oak Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031561	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f26	Environmental	Open in IMG/M
3300031679	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f23	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031724	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f20	Environmental	Open in IMG/M
3300031770	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f17	Environmental	Open in IMG/M
3300031771	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19	Environmental	Open in IMG/M
3300031781	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f20	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032008	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f18	Environmental	Open in IMG/M
3300032035	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF170	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032089	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f23	Environmental	Open in IMG/M
3300032094	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f25	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300032782	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.1	Environmental	Open in IMG/M
3300032829	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.3	Environmental	Open in IMG/M
3300032892	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.5	Environmental	Open in IMG/M
3300032895	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.3	Environmental	Open in IMG/M
3300033158	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.1	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M
3300033755	Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB26FY SIP fraction	Environmental	Open in IMG/M
3300033982	Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB22AY SIP fraction	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
E41_01156880	2170459005	Grass Soil	VRTEQIILFRCSNQIFAISSASVQEVRSVDSLAGAACEVNESTISKVRHALRRGDRSIYVVNTALHFGLKPSPPALIFLLR
Ga0062386_1010372831	3300004152	Bog Forest Soil	MGLEQARRTHPVRTEQIILFRSSNQIFAISSASVQEVRSVDSLAGAACEVNEPTMRKVRHALRRDDRSIYVVNTALHFGL
Ga0066388_1003977241	3300005332	Tropical Forest Soil	MRLKPAPAVKPLRTEQIILFRSSNQIFAISSGSVQEVRSVDSLAGAAIDIREPRVDKVRHAIRRGDRYLYVVNVALHFGLTFSAATLVFVLRKSRVALLIDGIEKMTTMTMLQALPNAFCHEERRWYRG
Ga0070762_102001862	3300005602	Soil	MQPAHAPKHAAPRTEQIILFRCSGEIFAISSSSVQEVRSVDSLAGAETDITGSSVAKVRHAIRRNGKNIYVVNGAIHFGLRPSPASLIFLLRNLR
Ga0070762_108690912	3300005602	Soil	MRMAAPQKSNPVRSEQIILFRAGNQIFAISSASVQEVRSVDSLAGAAVQINETSLSKVRHAIRRAGRNLYVVNA
Ga0070763_107526121	3300005610	Soil	MTATTPPRVVSLRTEQIILFRSSNQIFAISSGSVQEVRSVDSLAGSAAELSDSTVKKVRHVLRRTDRTLYVVNSALHFGLRPSPAALIFL
Ga0066903_1046830392	3300005764	Tropical Forest Soil	MRSATEHKPPVRTEQIILFRASREIFAISSASVQEVRSVDSLAGAPVAVSEPTLKKIRHAIRRGDKNVYVVNTAIHFGLRP
Ga0070766_111697151	3300005921	Soil	MQPAHAPKHAAPRTEQIILFRCSGEIFAISSSSVQEVRSVDSLAGAETDITGSSVAKVRHAIRRNGKNIYVVNGAIHFGLRPSPASLIFLLR
Ga0066790_101664152	3300005995	Soil	MRFEAADKQSKVRSEQIILFRCSNQLLAISSASVQEVRSVDSLACVATEINEPSIRKVRHALRRGERCIYVVNAAVHFGLKPSPAALIFLLRSSRVALLLDG
Ga0075029_1011766192	3300006052	Watersheds	MRFDSTHKASTARSEQIILFRSSNQVFAISSSSVQEVRSVDSLAGVAAEIDEPKVRTVRHVLRRGERCIFVVNAALHFGLKPSPAALIFLLRKSRVALLLDGIEKMTT
Ga0070712_1002056851	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MAPGSAPVRRGHPVRTEQIILFRCSNQIFAISSASVQEVRSVDSLAGAACEVNESTISKVRHALRRGDRSIYVVNTALHFGLKPSPPALIFL
Ga0081244_11971691	3300006939	Tropical Rainforest Soil	MRLKPAPAVKPLRTEQIILFRSSNQIFAISSGSVQEVRSVDSLAGAAIDVSEPRVDKVRHAIRRGDRNLYVVNVALHFGLTFSAATLVFVLRKSRVALLIDGIDK
Ga0099791_104820001	3300007255	Vadose Zone Soil	MQFAAAHKTPHARTEQIILFRCSTQVFAISSASVQEVRSVDTLAGSPLEINESTLPKVGHVFRRGEQNLYVVNGAVHFGLRPSPASLILLLRRSRTALLI
Ga0126373_100330661	3300010048	Tropical Forest Soil	MRLAASSQNSHPLRTEQIILFRASTQVFAISSASVQEVRSVDSLSGVAVDINEPSVAKVRHALRRGDRHVYVVNAAVHFGLRPSPAALIFLLRKSRVALLVDGIEKMSTMSRLQALPGVFCHEERAW
Ga0126373_107017452	3300010048	Tropical Forest Soil	MRLATPQKAHPVRAEQIILFRAGSQVFAISSASVQEVRSVGSLAGAAVDVNEPSLLKVRH
Ga0074044_102879711	3300010343	Bog Forest Soil	MRAAAPQKSLPARTEQIILFRASNQVFAISSGSVQEVRSVDSLAGAAVAINEASLGKVRHAMR
Ga0126379_100151385	3300010366	Tropical Forest Soil	MRLKPAPAVKPLRTEQIILFRSSNQIFAISSGSVQEVRSVDSLAGAAIDVSEPRVDKVRHAIRRGDRNLYVVNVALHFGLTFSAATLVFVLRKSRVALLI
Ga0126379_105083771	3300010366	Tropical Forest Soil	MRLAATSQNSHPLRTEQIILFRASTQVFAISSASVQEVRSVDSLSGVAVDINEPSLAKVRHALRRGDRHV
Ga0137392_109969351	3300011269	Vadose Zone Soil	MQFAAPHKAPHARTEQIILFRCSTQVFAISSASVQEVRSVDTLAGSPLEINESTLPKVGHVFRRGEQNLYVVNGAVHFGLRP
Ga0137394_101392693	3300012922	Vadose Zone Soil	MQFAAPHKAPHARTEQIILFRCSTQVFAISSASVQEVRSVDTLAGSPLEINESTLPKVGHVFRRGEQNLYVVNGAVHFGLRPSPASLILLLRRSRTALLIDGIEKMTTMTRL
Ga0126369_100995163	3300012971	Tropical Forest Soil	MRLAATSQNSLPLRTEQIILFRASTQVFAISSASVQEVRSVDSLSGVAVDINEPSLAKVRHALRRGDRHVYVVNAGVHFGLRPSPAALIFLLRKSRVALLVGGIEEMSPMSQLQALPGVFCHEEWAWY
Ga0126369_125312781	3300012971	Tropical Forest Soil	MRLKPAPAVKPLRTEQIILFRSSNQIFAISSGSVQEVRSVDSLAGAAIDVSEPRVDKVRHAIRRGDRNLYVVNVALHFGLTFSAATLVFVLRKSRVALLIDGIDKMTTMTMLQA
Ga0181534_105353262	3300014168	Bog	MRFESPHKTPTVRSEQIILFRCSSQIFAISSASVQEVRSVDSLAGLAAEINIPSVLKVRHMLQRGERSIYVVNVALHLGLKPSPVALIFLLRKSRVALLLDGIEKMTTMTRLQALPAAFCGEE
Ga0181535_102256282	3300014199	Bog	MRFESTHKTPAVRTEQIILFRSSNQVFAISSASVQEVRSVDSLAGAAMEIDEPAVPKVHHMLRRGERNVFVVNSAAHFGLRPSPAALIFLLRKTRVALLIDGIEKMTSMTRLQALSGAFCNEERVWYRGLTVLDQ
Ga0181526_109153691	3300014200	Bog	MRMAAPLKSAPVRAEQIILFRASNQVFAISSASVQEVRSVDSLAGVAVEINDTRLAKVRHAIRRNDRNLYVVNAPLHFGLRPTPAGLVFLLRHSRIALLVDGIEKMTTMTRLQALPGAFCHEERIWYRGLTVLDQNVI
Ga0182033_109566312	3300016319	Soil	MRLATPQKSHTVRSEQIILFRASNQIFAISSASVQEVRSVDSLAGVAVLVSESSVAKVRHTIRRTDRNLYVVNAPLHFGLRATPAALIFLLRNSRI
Ga0182034_119678471	3300016371	Soil	MAPGAPVRRGHPVRTEQIILFRCSNQIFAISSASVQEVRSVDSLAGAACEVNESTIDKVRHALRRGDRSIYVVNTALH
Ga0182040_108346322	3300016387	Soil	MRFRAAPVAKPLRREQIILFRSSSEIFAISSGSVQEVRSVDSLAGAAIDVSEPRVSKVRHAIRRGDRNLYVVNASLHF
Ga0182039_105274442	3300016422	Soil	MRSGTTEHKSSGVRAEQIILFRASGGVFAISSGSVQEVRSVDSLAGAPVSVSEPGLKKVQHAIRRGD
Ga0187802_101616462	3300017822	Freshwater Sediment	MRLAAPQKSPAARTEQIILFRASTQVFAMSSTSVQEVRSVDSLSGVAVDVNEATLSKVRHAI
Ga0187818_101297011	3300017823	Freshwater Sediment	MRLAVPHKVAPARAEQIILFRASNQVFAISSASVQEVRSVDSLAGAAVDINEPGLAKVRHVIRRTERNLYVVNAALHFGLRPTPAGLIFL
Ga0187818_105255502	3300017823	Freshwater Sediment	MRLATPQKAHPVRTEQIILFRASSQIFAISSASVQEVRSVDSLAGAAVDVNEPNLVKVRHAIRRGDRNLYVVNASLHFGLRPTPAALIFLLRKSRIALLVDGIE
Ga0187808_101224022	3300017942	Freshwater Sediment	MRLAAVQKSNPVRAEQIILFRASSQVFAISSASVQEVRSVDSLAGAAVEFNEPSLGKVRHAIRRGERNLYVVNAALHFGLRPTP
Ga0187819_107857941	3300017943	Freshwater Sediment	MRLAAVHKSSPVRTEQIILFRASNQLFAISSASVQEVRSVDSLAGAAVEISEPSLDKVRHAIRRGERNLYVVNAPLHFGLQPTPAALIFLLRKSRVALLVDGIEKMTTMTRLQALPATFCHEER
Ga0187879_107322041	3300017946	Peatland	MRFESTHKAPAVRTEQIILFRSSNQVFAISSASVQEVRSVDSLAGAAMEIDEPAVPKVHHMLRRGERNVFVVNSAAHFGLRPSPAALIFLLRKTRVALLIDGIEKMTSMTRLQALSGAF
Ga0187817_110071551	3300017955	Freshwater Sediment	MRPAAPQKSPAARTEQIILFRASTQIFAMSSTSVQEVRSVDSLSGVAVDINEPTLAKVRRAIRRGDRNLYVVNAALHFGLRPS
Ga0187777_108810232	3300017974	Tropical Peatland	MRTTAEHKSPGVRTEQIILFRASSEIFAVSSGSVQEVRSVDSLAGAPVTVTEPTLKKVRHAIRRGDKSVYVVNAAVHFGLRPSQPALIFLLRKSRVALLVDGIE
Ga0187782_100610773	3300017975	Tropical Peatland	MRFEQVHKTPAVRTEQIILFRSSNQVFAISSASVQEVRSVDSLSGASMEINEASVPTVRHMLKRGAHGVYVVNAALHFGLR
Ga0187782_101704421	3300017975	Tropical Peatland	MRLAVPQKAQPVRTEQIILFRASTQVFAISSASVQEVRSVDSLAGVAVEINEASLAKVRHALRRGERNLYVVNAALHFGLRPSPASLIFLL
Ga0187816_100637821	3300017995	Freshwater Sediment	MRLAAQQKSPAARTEQIILFRASTQIFAMSSTSVQEVRSVDSLSGVAVDVNEPTLAKVRHAIRRGERNLYVVNAALHFGLRPSPAALVFLLRKSRVALLVDGIEKMMTMSRLQ
Ga0187804_100777812	3300018006	Freshwater Sediment	MRLAAPQKAHPVRAEQIILFRASSQIFAISSASVQEVRSVDSLAGAAVDVNEPNLVKVRHAIRRGDRNLYVVNASLHFG
Ga0187804_103001792	3300018006	Freshwater Sediment	MRLAVPHKVAPARAEQIILFRASNQVFAISSASVQEVRSVDSLAGAAVDINEPGLAKVRHVIRRTERNL
Ga0187810_104330031	3300018012	Freshwater Sediment	MRLAAVHKSSPVRTEQIILFRASNQLFAISSASVQEVRSVDSLAGAAVEISEPSLDKVRHAIRRGERNLYVVNAPLHFGLQPTPA
Ga0187859_100638751	3300018047	Peatland	MRFESTHKAPAVRTEQIILFRSSNQVFAISSASVQEVRSVDSLAGAAMEIDEPAVPKVHHMLRRGERNVFVVNSAAHFGLRPSPAALIFLLRKARVALLIDGIEKMTSMTRLQALSG
Ga0187766_112135032	3300018058	Tropical Peatland	MRTTAEQKSPGVRAEQIILFRASSEIFAVSSGSVQEVRSVDSLSGAAIDVSEPRVGKVRHAIRHGDRNLYVVNVALHFGLP
Ga0187765_110385242	3300018060	Tropical Peatland	MRTTGEHKAPGVRTEQIILFRASSEIFAVSSGSVQEVRSVDSLAGAPVTVSEPHLNKVRHAIRRGDKSVYVVNAAVHFGLRPSQPALIFQ
Ga0187773_100303521	3300018064	Tropical Peatland	MKLAAPHKSHSARAEQIILFRASSQVFAVSSASVQEVRSVDSLAGAAVEINEPSLAKVRHAIRRGDRNQYVVNAALHFDL
Ga0187768_10881882	3300020150	Tropical Peatland	MRLATPQKAHPVRTEQIILFRASSQIFAISSASVQEVRSVDSLAGAAVDVNEPSLVKVRHAIRRGNGNLYVVNAPLHFGLRPIPSALIFLLRKSRIALL
Ga0210403_102265073	3300020580	Soil	MAPGSAPVRRGHPVRTEQIILFRCSNQIFAISSASVQEVRSVDSLAGAACEVNESTISKVRHALRRGDRSIYVVNTALHFGLKP
Ga0210403_103723572	3300020580	Soil	MRFEPAHKTPAVRSEQIILFRCSSQLLAISSSSVQEVRSVDSLAGLAADISVPGIRKVRHVLQRGDRSIYVVNVALHFGLKPTPAGLIFLLRKSRVALLLDGIEKMT
Ga0210403_110256701	3300020580	Soil	MQFAATHKAPHARTEQIILFRCSTQVFAISSASVQEVRSVDTLAGSPVEINESTLPKVGHMFRRGEQNLYVVNGAVHFGLRPSPASLIFLLRRSRTALLIDGIEKMTTMTRLQALPAAFC
Ga0210401_111946881	3300020583	Soil	MTSPTPLRSTPLRTEQIILFRSSTQIFAISSGSVQEVRSVDSLAGSAAELGDSSVKKVRHVLRRTDRTLYVVNSALHFGLRPSPAALIFLLRRSRAALLVDGIEKMTT
Ga0210406_112588612	3300021168	Soil	MPAAATHKHAQPRSEQIILFRCSSEIFAISSASVQEVRSVDNLSGLETDVTESSVAKVRHALRRADKNIYVVNGALHFGLRPSPPSLIFLLRNL
Ga0210400_115782702	3300021170	Soil	MQFAATHKATHARTEQIILFRCSTQVFAISSASVQEVRSVDSLAGSPMEINEPTLPKVGHMFRRGEQNLYVVNGAVHFGLRPSPASLIFLMRRSRT
Ga0210393_102705502	3300021401	Soil	MQFAATHKAPHARTEQIILFRCSTQVFAISSASVQEVRSVDTLAGSPVEINESTLPKVGHMFRRGEQNLYVVNGAVHFGLRPSPASLIFLLRRSRTALLIDGIEKMTTMTRLQALP
Ga0210389_100174735	3300021404	Soil	MQPAHAPKHAAPRTEQIILFRCSGEIFAISSSSVQEVRSVDSLAGAETDITGSSVAKVRHAIRRNGKNIYVVNGAIHFGLRPSPASLIFLLRNLRVALLID
Ga0210383_105347321	3300021407	Soil	MQPAPAPKHAAPRTEQIILFRCSSEIFAISSSSVQEVRSVDSLAGAETDITGSSVAKVRHAIRRNGKNIYVVNGAIHFGLRPSPASLIFLLR
Ga0210394_104546552	3300021420	Soil	MARGSAPVRRGHPVRTEQIILFRCSNQIFAISSASVQEVRSVDSLAGAACEVNESTISKVRHALRRGDRSIY
Ga0210409_109836801	3300021559	Soil	MRMAAPQKSNPVRSEQIILFRAGNQIFAISSASVQEVRSVDSLAGAAVQISETSLSKVRHAIRRAGRNLYVVNAPLHFGLRATPAALVFLLRNSRIALLVDG
Ga0126371_106364062	3300021560	Tropical Forest Soil	MRLATPQKAHPVRAEQIILFRAGSQVFAISSASVQEVRSVGSLAGAAVDVNEPSLLKVRHAIRRG
Ga0207664_117672031	3300025929	Agricultural Soil	MARGSAPVRRGHPVRTEQIILFRCSNQIFAISSASVQEVRSVDSLAGAACEVNESTISKVRHALRRGDRSIYVVNTALHFGLKPSPPALIFLLRKS
Ga0209240_11352582	3300026304	Grasslands Soil	MQFAAPHKAPHARTEQIILFRCSTQVFAISSASVQEVRSVDTLAGSPLEINESTLPKVGHVFRRGEQNLYVVNGAVHFGLRPSPASLILLLRRSRTALLIDGIEKMTT
Ga0209648_101909663	3300026551	Grasslands Soil	MASGSPSARRGHPVRTEQIILFRCSNQIFAISSASVQEVRSVDSLAGAACEMNESTIDKVRHALRRGDRSIYVVNTALHFGLKPSPPALIFLLRKSRVALLIDG
Ga0207859_10076422	3300026859	Tropical Forest Soil	MRFKLAPTPKPLRTEQIILFRSSSQIFAISSGSVQEVRSVDSLAGAARDVAEPRVSKVRHAIRRGDRNLYVVNVALHF
Ga0207777_10283311	3300027330	Tropical Forest Soil	MRAAVEHKAPAIRTEQIILFRASNEIFAISSGSVQEVRSVDSLAGAPVTVTEPSLKKVRHALRRGSKNVYVVNTAIHFGLRPSSASLIFLLRKSR
Ga0207777_10834002	3300027330	Tropical Forest Soil	MRAATEHKTPAVRTEQIILFRASSEVFAISSGSVQEVRSVDGLAGAPVAVSEPSLLKVRHALRRGNKNVYVVNTAIHFGLRPSSAALIFLLRKSRVA
Ga0209447_101619711	3300027701	Bog Forest Soil	MRFAAPQKNAPLRTEQIILFRASNQIFAISSASVQEVRSVDSLSGAAVEVSESSLPQVRHAIQRSDRNLYVVNAPLHFGLRPTPSALIFLLRNARVALLIDGIEKMTTMSRLLALPGAFC
Ga0207862_11038832	3300027703	Tropical Forest Soil	MRSVTAVHKPAGVRTEQIILFRASSEIFAISSGSVQEVRSVDTLAGTPVSASEPGLKKVQHAIRRGDKNVYVVNTAIHFGLRPSAVALIFLLRKSRLALLVDAIEKMTTMTRLQ
Ga0207862_11151111	3300027703	Tropical Forest Soil	MRFGSAHKHSPARSEQLILFRSSNQIFAISSSSVQEVRSVDSLAGLATEILEPQVPTVRHALRRGERCVYVVNVALHFGLKPSPAALIFLLRKSRVALLLDGIEKMTTMTMLQALPAAFCHEEQRWYRGLTV
Ga0209380_102018741	3300027889	Soil	MQPAHAPKHAAPRTEQIILFRCSGEIFAISSSSVQEVRSVDSLAGAETDITGSSVAKVRHAIRRNDKNIYVVNGAIHFGLRPSPASLIFLLRNLRVALLIDGIEKMSTM
Ga0170823_139882302	3300031128	Forest Soil	MAPGSAPVRRGHPVRTEQIILFRCSNQIFAISSASVQEVRSVDSLAGAACEVNESTISKVRHALRRGDRSIYVVNTALHFGLKPSPPALIFLLRKSRVALLIDGIEK
Ga0318528_105213571	3300031561	Soil	MRLATPQKSHTVRSEQIILFRASNQIFAISSASVQEVRSVDSLAGVAVLVSEGSVAKVRH
Ga0318561_100851581	3300031679	Soil	MRLKPPPAVKPLRTEQIILFRSSNQIFAISSGSVQEVRSVDSLAGAAIDVSEPRVDKVRHAIRRGDRNLYVVNVALHFGLTFSAATLVFVLRKSRVALLIDGIDKMTTMTMLQALPNAFCHEERRWYRGLTVLDQSVIPV
Ga0306917_112898362	3300031719	Soil	MRLATPQKAHPVRAEQIILFRAGSQVFAISSASVQEVRSVDSLAGAAVGVNEPSLLKVRHAIRRGDRNLYVVNAPLHFGLRATPSALIFILRKSRIALLVDGIEKMTSMTRLQALPGAFCHEERVWYRGLTVLDQ
Ga0318500_101696131	3300031724	Soil	MRLKPAPAVKPLRTEQIILFRSSNQIFAISSGSVQEVRSVDSLAGAAIDVSEPRVDKVRHAIRRGDRNLYVVNVALHFGLTFSAATLVFVLRKSRVALLIDGI
Ga0318521_107345592	3300031770	Soil	MRLAATSQNSLPLRTEQIILFRASTQVFAISSASVQEVRSVDSLSGVAVDINEPSLAKVRHALRRGDRHVY
Ga0318546_108258671	3300031771	Soil	MRLAATSQNSLPLRTEQIILFRASTQVFAISSASVQEVRSVDSLSGVAVDINEPSLAKVRHALRR
Ga0318547_102735282	3300031781	Soil	MRLAATSQNSLPLRTEQIILFRASTQVFAISSASVQEVRSVDSLSGVAVDINEPSLAKVRHALRRGDRHVYVVNAAVHFGLRPSPAALIFLLRKSRVALLVDGIEKMSTMSRLQALPGVF
Ga0306925_108290341	3300031890	Soil	MRLATPQKSHTVRSEQIILFRASNQIFAISSASVQEVRSVDSLAGVAVLVSESSVAKVRHTIRRTDRNLYVVNAPLHFGLRATPAALIFLL
Ga0306925_110827002	3300031890	Soil	MRSGTTEHKSSGVRAEQIILFRASGGVFAISSGSVQEVRSVDSLAGAPVSVSEPGLKKVQHAIRRGDKNVYVVNTAIHFGLRASPVALIFLLRKSRVALLVDAIE
Ga0306921_112278052	3300031912	Soil	MRLATPQKAHPVRAEQIILFRAGSQVFAISSASVQEVRSVDSLAGAAVGVNEPSLLKVRHAIRRGDRNLYVVNAPLHFGLRATPSALIFILRKSRIALLVDGIEKMTSMTR
Ga0310912_106669062	3300031941	Soil	MRSGTTEHKSSGVRAEQIILFRASGGVFAISSGSVQEVRSVDSLAGAPVSVSEPGLKKVQHAIRRGDKNV
Ga0310910_111059882	3300031946	Soil	MASGSPSARRGHPVRTEQIILFRCSNQIFAISSASVQEVRSVDSLAGAACEVNESTIDKVRHALRRGDRSIYVVNTALHFGLKASPPAL
Ga0306922_123146261	3300032001	Soil	MAPGAPVRRGHPARTEQIILFRCSNQIFAISSASVQEVRSVDSLAGAACEVNESTIDKVRHALRRGDRSIYVVNTALHFGLKASPPALIFL
Ga0318562_108287852	3300032008	Soil	MRLKPPPAVKPLRTEQIILFRSSNQIFAISSGSVQEVRSVDSLAGAAIDVSEPRVDKVRHAIRRGDRNLYVVNVALHFGLTFSAATLVFVLRKSRVALLI
Ga0310911_105161202	3300032035	Soil	MRLAAASQTSHPLRTEQIILFRASTQVFAISSASVQEVRSVDSLSGVAVDINEPSLAKVRHALRRGDRHVYVVNAAVHFG
Ga0310911_106718002	3300032035	Soil	MRAGTGEHRPAGVRTEQIILFRAGSEVFAISSGSVQEVRSVDSLAGKPVSASEPGLKKVQHAIRRGDKNVY
Ga0306924_107809571	3300032076	Soil	MRSGTTEHKSSGVRAEQIILFRASGGVFAISSGSVQEVRSVDSLAGAPVSVSEPGLKKVQHAIRRGDKNVYVVNTAIHFGLRASPVALIFLLRKSRVALLVDAIEKMTTMTQLQAL
Ga0306924_109888502	3300032076	Soil	MRLKPPPAVKPLRTEQIILFRSSNQIFAISSGSVQEVRSVDSLAGAAIDVSEPRVDKVRHAIRRGDRNLYVVNVALHFGLT
Ga0318525_102935141	3300032089	Soil	MRSGTTEHKSSGVRAEQIILFRASGGVFAISSGSVQEVRSVDSLAGAPVSVSEPGLKKVQHAIRRGDKNVYVVNTAIHFGLRASPVALIFLLRKSRVALLVDAIEKMTTMTQLQALPGAFCNEE
Ga0318525_104599281	3300032089	Soil	MRLAATSQNSLPLRTEQIILFRASTQVFAISSASVQEVRSVDSLSGVAVDINEPSLAKVRHALRRGDRHVYVVNAAVHFGLRPSPAALIFLLRKSRVALLVDGIEKMSTMSRLQALPG
Ga0318540_104555651	3300032094	Soil	MRSGTTEHKSSGVRAEQIILFRASGGVFAISSGSVQEVRSVDSLAGAPVSVSEPGLKKVQHAIRRGDKNVYVVNTAIHFGLRASPVALIFLLRKSRVALLVDAIEKMTTMTQLQALPGAFCN
Ga0307471_1024213051	3300032180	Hardwood Forest Soil	MAPGSAPVRRGHPVRTEQIILFRCSNQIFAISSASVQEVRSVDSLAGAACEVNESTISKVRHALRRGDRSIYVVNTALHFGLKPSPPALIFLLRKSRVALL
Ga0306920_1004641991	3300032261	Soil	MASGSPSARRGHPVRTEQIILFRCSNQIFAISSASVQEVRSVDSLAGAACEVNESTIDKVRHALRRGDRSIYVVNT
Ga0335082_107746582	3300032782	Soil	MRAAAEHKTAGVRTEQIILFRASHEIFAISSGSVQEVRSVDSLAGAPVAISEPKLRKVRHALRRGDKNLYVVNSALHFGLRPSPATLIFLLRKARVALLVDSIEKMTTMTVLQ
Ga0335070_100326501	3300032829	Soil	MRAATEHKTPAVRTEQIILFRASSEVFAISSGSVQEVRSVDGLAGAPVAVSEPRLQKVRHALRRGNKNVYVVNTAIHFGLRPSPAALIF
Ga0335081_106796231	3300032892	Soil	MKLAAPHKSHSARAEQIILFRASSQVFAVSSASVQEVRSVDSLAGAAVEINEPSLAKVRHAIRRGDRNQYVVNAALHF
Ga0335074_102129623	3300032895	Soil	MRLATPQKSQPVRAEQIILFRASSQVFAISSASVQEVRSVDSLAGAAVEVNESSLLKVRHAIQRGDRNLYVVNAPMHFGLRPTPAALIFLLRKSRVALLVDGIEKMTTMTR
Ga0335077_111107522	3300033158	Soil	MAPGSAPVLRGHPVRTEQIILFRCSNQIFAISSASVQEVRSVDSLAGAASEVNSPTIGKVRHALRRGERSVYVV
Ga0310914_101078971	3300033289	Soil	MRLAATSQNSLPLRTEQIILFRASTQVFAISSASVQEVRSVDSLSGVAVDINEPSLAKVRHALRRGDRHVYVVNAAVHFGLRPSPAALIFLLRKS
Ga0371489_0326796_3_317	3300033755	Peat Soil	MRLATPQKAQPARTEQIILFRASSQIFAISSASVQEVRSVDSLAGVAVDVNEPSLVKVRHAIRRGDRNLYVVNTPVHFGLRPTPSALIFLLRKSRIALLVDGIEK
Ga0371487_0428180_272_565	3300033982	Peat Soil	MRLTSEQKSKPVRTEQIILFRAGNQVFAISSSSVQEVRSVDSLAGVAVEISEPCLRKVRHAIRRGERNLYVVNAALHFGLRPTPAALIFLLRKSRVAL

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F101650

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences