Metagenome Family F101642

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F101642
Family Type	Metagenome
Number of Sequences	102
Average Sequence Length	42 residues
Representative Sequence	MPTDLGPAFARKRAAQAKLQTEITMLLFWLIVSLGLLFEFLA
Number of Associated Samples	62
Number of Associated Scaffolds	102

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	83.00 %
% of genes near scaffold ends (potentially truncated)	43.14 %
% of genes from short scaffolds (< 2000 bps)	88.24 %
Associated GOLD sequencing projects	54
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.48

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (76.471 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (23.529 % of family members)
Environment Ontology (ENVO)	Unclassified (44.118 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (60.784 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 52.86% β-sheet: 0.00% Coil/Unstructured: 47.14%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.48
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.48
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 102 Family Scaffolds
PF00216	Bac_DNA_binding	1.96
PF02729	OTCace_N	1.96
PF00561	Abhydrolase_1	0.98
PF09361	Phasin_2	0.98
PF05128	DUF697	0.98
PF04280	Tim44	0.98
PF13183	Fer4_8	0.98
PF00296	Bac_luciferase	0.98
PF02586	SRAP	0.98
PF10686	YAcAr	0.98
PF09539	DUF2385	0.98
PF01068	DNA_ligase_A_M	0.98
PF16884	ADH_N_2	0.98
PF12071	DUF3551	0.98
PF04773	FecR	0.98
PF00188	CAP	0.98
PF12697	Abhydrolase_6	0.98

COG ID	Name	Functional Category	% Frequency in 102 Family Scaffolds
COG0776	Bacterial nucleoid DNA-binding protein IHF-alpha	Replication, recombination and repair [L]	1.96
COG1423	ATP-dependent RNA circularization protein, DNA/RNA ligase (PAB1020) family	Replication, recombination and repair [L]	0.98
COG1793	ATP-dependent DNA ligase	Replication, recombination and repair [L]	0.98
COG2135	ssDNA abasic site-binding protein YedK/HMCES, SRAP family	Replication, recombination and repair [L]	0.98
COG2141	Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase)	Coenzyme transport and metabolism [H]	0.98
COG2340	Spore germination protein YkwD and related proteins with CAP (CSP/antigen 5/PR1) domain	Cell cycle control, cell division, chromosome partitioning [D]	0.98
COG3768	Uncharacterized membrane protein YcjF, UPF0283 family	Function unknown [S]	0.98
COG4395	Predicted lipid-binding transport protein, Tim44 family	Lipid transport and metabolism [I]	0.98

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	76.47 %
All Organisms	root	All Organisms	23.53 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	76.47 %
cellular organisms	root	All Organisms → cellular organisms	23.53 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	76.47 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	23.53 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	76.47 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	13.73 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	76.47 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	9.80 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	0.98 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	76.47 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	7.84 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.98 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	76.47 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	4.90 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1.96 %
Comamonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	0.98 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	76.47 %
Rhodoplanes	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes	4.90 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1.96 %
unclassified Comamonadaceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → unclassified Comamonadaceae	0.98 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	76.47 %
unclassified Rhodoplanes	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes	4.90 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1.96 %
Comamonadaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → unclassified Comamonadaceae → Comamonadaceae bacterium	0.98 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	76.47 %
Rhodoplanes sp. JGI PP 4-B12	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. JGI PP 4-B12	4.90 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1.96 %
Comamonadaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → unclassified Comamonadaceae → Comamonadaceae bacterium	0.98 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.98 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300004633\|Ga0066395_10312915	Not Available	862	Open in IMG/M
3300005179\|Ga0066684_10369556	Not Available	961	Open in IMG/M
3300005332\|Ga0066388_100087199	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3526	Open in IMG/M
3300005332\|Ga0066388_100134647	All Organisms → cellular organisms → Bacteria	3023	Open in IMG/M
3300005332\|Ga0066388_101286229	Not Available	1259	Open in IMG/M
3300005332\|Ga0066388_101649941	Not Available	1131	Open in IMG/M
3300005332\|Ga0066388_103439622	All Organisms → cellular organisms → Bacteria	808	Open in IMG/M
3300005332\|Ga0066388_103981856	All Organisms → cellular organisms → Bacteria	753	Open in IMG/M
3300005332\|Ga0066388_104930558	Not Available	678	Open in IMG/M
3300005332\|Ga0066388_105571318	Not Available	638	Open in IMG/M
3300005332\|Ga0066388_106201150	Not Available	603	Open in IMG/M
3300005332\|Ga0066388_106905168	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → unclassified Comamonadaceae → Comamonadaceae bacterium	571	Open in IMG/M
3300005436\|Ga0070713_102074085	Not Available	551	Open in IMG/M
3300005536\|Ga0070697_101456661	Not Available	612	Open in IMG/M
3300005764\|Ga0066903_101899073	Not Available	1140	Open in IMG/M
3300005764\|Ga0066903_102466673	Not Available	1006	Open in IMG/M
3300005764\|Ga0066903_105612890	Not Available	660	Open in IMG/M
3300005764\|Ga0066903_107438579	Not Available	565	Open in IMG/M
3300005764\|Ga0066903_108525501	Not Available	522	Open in IMG/M
3300005764\|Ga0066903_109151770	Not Available	500	Open in IMG/M
3300006052\|Ga0075029_101337692	Not Available	503	Open in IMG/M
3300006175\|Ga0070712_100366952	Not Available	1182	Open in IMG/M
3300006175\|Ga0070712_100994704	Not Available	726	Open in IMG/M
3300009012\|Ga0066710_101905223	Not Available	889	Open in IMG/M
3300010046\|Ga0126384_10670813	Not Available	915	Open in IMG/M
3300010048\|Ga0126373_10351666	Not Available	1486	Open in IMG/M
3300010048\|Ga0126373_10576987	Not Available	1175	Open in IMG/M
3300010048\|Ga0126373_10669907	Not Available	1094	Open in IMG/M
3300010358\|Ga0126370_10304622	Not Available	1265	Open in IMG/M
3300010361\|Ga0126378_12528763	Not Available	586	Open in IMG/M
3300010366\|Ga0126379_11490792	Not Available	782	Open in IMG/M
3300010366\|Ga0126379_12328717	Not Available	636	Open in IMG/M
3300010376\|Ga0126381_100601245	Not Available	1564	Open in IMG/M
3300010376\|Ga0126381_100817515	Not Available	1338	Open in IMG/M
3300010376\|Ga0126381_101148851	Not Available	1122	Open in IMG/M
3300010376\|Ga0126381_102738501	Not Available	704	Open in IMG/M
3300010376\|Ga0126381_103835570	Not Available	587	Open in IMG/M
3300012971\|Ga0126369_10295556	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1618	Open in IMG/M
3300016270\|Ga0182036_10539543	Not Available	928	Open in IMG/M
3300016294\|Ga0182041_10002292	All Organisms → cellular organisms → Bacteria	9851	Open in IMG/M
3300016319\|Ga0182033_10370784	Not Available	1203	Open in IMG/M
3300016341\|Ga0182035_10597951	All Organisms → cellular organisms → Bacteria	953	Open in IMG/M
3300016357\|Ga0182032_10000644	All Organisms → cellular organisms → Bacteria → Proteobacteria	14625	Open in IMG/M
3300016357\|Ga0182032_10509908	Not Available	990	Open in IMG/M
3300016387\|Ga0182040_11202659	Not Available	637	Open in IMG/M
3300016387\|Ga0182040_11377765	Not Available	597	Open in IMG/M
3300016404\|Ga0182037_10176734	All Organisms → cellular organisms → Bacteria	1635	Open in IMG/M
3300016404\|Ga0182037_11443932	Not Available	609	Open in IMG/M
3300016422\|Ga0182039_10029192	Not Available	3522	Open in IMG/M
3300016422\|Ga0182039_12211003	Not Available	508	Open in IMG/M
3300016445\|Ga0182038_11634359	Not Available	580	Open in IMG/M
3300017822\|Ga0187802_10038475	Not Available	1724	Open in IMG/M
3300017822\|Ga0187802_10043412	All Organisms → cellular organisms → Bacteria	1630	Open in IMG/M
3300017822\|Ga0187802_10062611	Not Available	1372	Open in IMG/M
3300017924\|Ga0187820_1000460	All Organisms → cellular organisms → Bacteria → Proteobacteria	8973	Open in IMG/M
3300017932\|Ga0187814_10294557	Not Available	620	Open in IMG/M
3300017933\|Ga0187801_10216415	Not Available	762	Open in IMG/M
3300017942\|Ga0187808_10159275	Not Available	997	Open in IMG/M
3300017970\|Ga0187783_10532339	All Organisms → cellular organisms → Bacteria → Proteobacteria	851	Open in IMG/M
3300017994\|Ga0187822_10013144	Not Available	2017	Open in IMG/M
3300017994\|Ga0187822_10343574	Not Available	537	Open in IMG/M
3300021560\|Ga0126371_13445141	Not Available	534	Open in IMG/M
3300025915\|Ga0207693_10644587	All Organisms → cellular organisms → Bacteria	823	Open in IMG/M
3300025928\|Ga0207700_10854799	Not Available	814	Open in IMG/M
3300027070\|Ga0208365_1003129	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1920	Open in IMG/M
3300027070\|Ga0208365_1022049	Not Available	823	Open in IMG/M
3300027787\|Ga0209074_10339148	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	613	Open in IMG/M
3300031543\|Ga0318516_10274916	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. JGI PP 4-B12	974	Open in IMG/M
3300031561\|Ga0318528_10470582	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. JGI PP 4-B12	675	Open in IMG/M
3300031561\|Ga0318528_10765521	Not Available	516	Open in IMG/M
3300031573\|Ga0310915_10097229	Not Available	1983	Open in IMG/M
3300031744\|Ga0306918_10234903	Not Available	1394	Open in IMG/M
3300031744\|Ga0306918_10685868	Not Available	802	Open in IMG/M
3300031744\|Ga0306918_10981804	Not Available	656	Open in IMG/M
3300031754\|Ga0307475_10070671	Not Available	2668	Open in IMG/M
3300031754\|Ga0307475_11260951	Not Available	574	Open in IMG/M
3300031770\|Ga0318521_10628050	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. JGI PP 4-B12	650	Open in IMG/M
3300031781\|Ga0318547_10704237	Not Available	628	Open in IMG/M
3300031796\|Ga0318576_10023515	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. JGI PP 4-B12	2479	Open in IMG/M
3300031821\|Ga0318567_10102327	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1551	Open in IMG/M
3300031833\|Ga0310917_10033432	All Organisms → cellular organisms → Bacteria	3058	Open in IMG/M
3300031833\|Ga0310917_10933946	Not Available	583	Open in IMG/M
3300031833\|Ga0310917_11193094	Not Available	506	Open in IMG/M
3300031879\|Ga0306919_10475326	Not Available	963	Open in IMG/M
3300031879\|Ga0306919_10494213	Not Available	943	Open in IMG/M
3300031880\|Ga0318544_10309530	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. JGI PP 4-B12	613	Open in IMG/M
3300031890\|Ga0306925_10882367	Not Available	921	Open in IMG/M
3300031896\|Ga0318551_10297318	Not Available	908	Open in IMG/M
3300031912\|Ga0306921_11678638	Not Available	688	Open in IMG/M
3300031941\|Ga0310912_11282027	Not Available	556	Open in IMG/M
3300031945\|Ga0310913_10154654	Not Available	1587	Open in IMG/M
3300031946\|Ga0310910_11104553	Not Available	617	Open in IMG/M
3300031954\|Ga0306926_12638855	Not Available	547	Open in IMG/M
3300031954\|Ga0306926_12841586	Not Available	522	Open in IMG/M
3300032001\|Ga0306922_10704391	Not Available	1062	Open in IMG/M
3300032039\|Ga0318559_10315973	Not Available	726	Open in IMG/M
3300032091\|Ga0318577_10515196	Not Available	570	Open in IMG/M
3300032205\|Ga0307472_101560433	Not Available	647	Open in IMG/M
3300032261\|Ga0306920_104134957	Not Available	524	Open in IMG/M
3300033289\|Ga0310914_10160354	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1990	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	90.20%
Aquatic	Environmental → Aquatic	9.80%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	90.20%
Freshwater	Environmental → Aquatic → Freshwater	8.82%
Sediment	Environmental → Aquatic → Sediment	0.98%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	64.71%
Loam	Environmental → Terrestrial → Soil → Loam	24.51%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	8.82%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.98%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.98%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	47.06%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	18.63%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	14.71%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	8.82%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	5.88%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	1.96%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.98%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.98%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.98%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	23.53%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	20.59%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	16.67%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	14.71%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	8.82%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	5.88%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	2.94%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	1.96%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.98%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.98%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.98%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.98%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	0.98%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental	Open in IMG/M
3300005179	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006052	Freshwater sediment microbial communities from North America - Little Laurel Run_MetaG_LLR_2013	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300017822	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_2	Environmental	Open in IMG/M
3300017924	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_5	Environmental	Open in IMG/M
3300017932	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW-S_4	Environmental	Open in IMG/M
3300017933	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_1	Environmental	Open in IMG/M
3300017942	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_3	Environmental	Open in IMG/M
3300017970	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300017994	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_2	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300027070	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF004 (SPAdes)	Environmental	Open in IMG/M
3300027787	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter (SPAdes)	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031561	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f26	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031754	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515	Environmental	Open in IMG/M
3300031770	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f17	Environmental	Open in IMG/M
3300031781	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f20	Environmental	Open in IMG/M
3300031796	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f24	Environmental	Open in IMG/M
3300031821	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f20	Environmental	Open in IMG/M
3300031833	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031880	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f25	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031896	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f19	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300031945	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032039	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f21	Environmental	Open in IMG/M
3300032091	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f25	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0066395_103129151	3300004633	Tropical Forest Soil	MPTDLGPAFARKRAAQAKLQTEITMLLFWLIVSLGLLFEF
Ga0066684_103695562	3300005179	Soil	GQLGERQSVMPTDLAPALARKRAAQLQLQIEINMMLFWCIVMLGLTFEFLA*
Ga0066388_1000871991	3300005332	Tropical Forest Soil	MPTDFEPVSARKRAAQAQAQPEITMLLFWLIICLGMVGLLFEVVGK*
Ga0066388_1001346471	3300005332	Tropical Forest Soil	MPTDLAPAFARKRAAQAKLQTEITMLLFWLVVSLGLLFEFLGK*
Ga0066388_1012862292	3300005332	Tropical Forest Soil	MPTDLAPALARKRAAQAQLQIEINMMLFWSIIMFGLMFEFLA*
Ga0066388_1016499411	3300005332	Tropical Forest Soil	MPTDIAPALARKRAAQAKLQTEITMLLFWLIVSLGLLFEFLGNSS*
Ga0066388_1034396221	3300005332	Tropical Forest Soil	MPTDLAPALARKRAAQAQLQIEINMMLFWSIICLGLMFEFLA*
Ga0066388_1039818561	3300005332	Tropical Forest Soil	MPTDLDAAFARKRAAQAKLQTEITMLLFWLIVSLGLLFEFLGNSS*
Ga0066388_1049305581	3300005332	Tropical Forest Soil	MPTDLAPALARKRAAQAQLQIEINMMLFWSIIMLGLMFEFLA*
Ga0066388_1055713182	3300005332	Tropical Forest Soil	MPTDLAVFARKRAAQAKVQTEITMLLFWLIVSLGLLFEFLGNSS*
Ga0066388_1062011501	3300005332	Tropical Forest Soil	MPTDLGLAFAQKRAAQAKLQTEITMLLFWLIVSLGLLFEFLA*
Ga0066388_1069051682	3300005332	Tropical Forest Soil	MPTDLAPALARKRAAQAQLQIEINMMLFSLIIWLGLMFEFLA*
Ga0070713_1020740852	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MPTDLNPALGRKRAAQAKLQTEITVLLFWLIMCLGLLFEFLGNSS*
Ga0070697_1014566611	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	IMPTDLAPAFARKRAAQAKLQTEITILLFWLIMCVGLLFEFFGNSS*
Ga0066903_1018990732	3300005764	Tropical Forest Soil	MPTDLAPALARKRAAQAQLQIEINTMLFWSIIMFGLMFEFLA*
Ga0066903_1024666731	3300005764	Tropical Forest Soil	MPTDLAPALARKRAAQAQLQIEINMMLFWSIIMLGLMFEFFA*
Ga0066903_1056128902	3300005764	Tropical Forest Soil	MPTDLAPALARKRAAQAQLQIEINMTLFWSIIMLGLMFEFLA*
Ga0066903_1074385791	3300005764	Tropical Forest Soil	MPTDLGPAFARKRAAQAKLQTEITMLLFWLIVSLGLLFEFL
Ga0066903_1085255012	3300005764	Tropical Forest Soil	MPTDLAPALARKRAAQAQSQIEINMMLFWSIIMFGLMFEFLA*
Ga0066903_1091517701	3300005764	Tropical Forest Soil	MPTDLGPAFARKRAAQAKLQTEITMLLFWLIVSLG
Ga0075029_1013376921	3300006052	Watersheds	IMPTDLAPAFARKRAAQAKLQTEITMLLFWLIVSLGLLFEFLGNSS*
Ga0070712_1003669522	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MPTDLAPAFARKRAAQAQLQTEINMLLFWSIIMLGLMFEFLA*
Ga0070712_1009947041	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MPTDLTPAFARKRAAQAKLQTEITMLLFWLIVSLG
Ga0066710_1019052231	3300009012	Grasslands Soil	MPTDLAPAFARKRAAQAKLQTEISIMLFCLVVSLGLLFEFLGNSS
Ga0126384_106708132	3300010046	Tropical Forest Soil	MPTDLGPAFARKRAAQAKLQTEIATLLFWLIVSLGL
Ga0126373_103516661	3300010048	Tropical Forest Soil	MPTDLGPAFARKRAAQAKLQTEITMLLFWLIVSLGLLFEFLA*
Ga0126373_105769872	3300010048	Tropical Forest Soil	MPTDLAPALARKRAAQLQLQIEINMMLFWCIMMLGLFFEFIA*
Ga0126373_106699074	3300010048	Tropical Forest Soil	RPIMPTDLDPAFARKRAAQAKIQTEITMLLFWLIMCLGLLFEFLGNSS*
Ga0126370_103046221	3300010358	Tropical Forest Soil	IMPTDLGPAFARKRAAQAKLQTEIATLLFWLIVSLGLLFEFL*
Ga0126378_125287631	3300010361	Tropical Forest Soil	MPTDLGPAFARKRAAQAKLQTEIATLLFWLIVSLGLL
Ga0126379_114907921	3300010366	Tropical Forest Soil	MPTDLAPALARKRAAQAQLQIEINTMLFWSIIMLGLMFEFYA*
Ga0126379_123287171	3300010366	Tropical Forest Soil	MPTDLAPALARKRATQARLQTEINMLLFGLIICLGLMFEFLG
Ga0126381_1006012452	3300010376	Tropical Forest Soil	MPTDIAPALARKGAAQAKLQTEITMLLFWLIVSLGLLFEFLGNSS*
Ga0126381_1008175153	3300010376	Tropical Forest Soil	MPTDLGPAFARKRAAQAKVQTEITMLLFWLIMCLGLLFEFLGNGS*
Ga0126381_1011488515	3300010376	Tropical Forest Soil	MPTDLDPAFAQKRAAQAKKQTEITMLLFWLIMCLGLLFEFLGNSS*
Ga0126381_1027385012	3300010376	Tropical Forest Soil	MPTDLDPVSARKRTAQAQAQPEITMLLFWLIISLGMLGLLFEVLAR*
Ga0126381_1038355701	3300010376	Tropical Forest Soil	MPTDFEPVSARKRAAQAQAQPEITMLLFWLIICLGMVGLLFEV
Ga0126369_102955561	3300012971	Tropical Forest Soil	PTDLAPAFARKRAAQAKLQTEITMLLFWLIVSLGLLFEFLGNSS*
Ga0182036_105395431	3300016270	Soil	MPTDLAPVFARKRAAQAKLQTEIMMLLFWLIVCLGLLFEFLDS
Ga0182041_1000229218	3300016294	Soil	MPTDLAPAFARKRAAQAKLQTEITMLLFWLIVSLGLLFEFLGNSSEPATLT
Ga0182033_103707842	3300016319	Soil	MPTDLAPALARKRAAQARLQIEINMMLFWSIIMFGLMFEFLAL
Ga0182035_105979512	3300016341	Soil	MRATIMPTDLGPAFARKRAAQAKLQTEITMLLFWLIVSLGLLFEFLA
Ga0182032_1000064422	3300016357	Soil	MPTDLGPVSVGKRAGQAQAQTETTMLLFWLIICLGMLVLFFEVQ
Ga0182032_105099081	3300016357	Soil	MPTDLAPVFARKRAAQAKLQTEITMLLFWLVVSLGL
Ga0182040_112026592	3300016387	Soil	MPTDLAPALARKRMAQAQLQTEINMLLFWSVIMLGLMFEFLA
Ga0182040_113777651	3300016387	Soil	MPTDLAPVFARKRAAQAKLQTEIMMLLFWLIMCLGLL
Ga0182037_101767342	3300016404	Soil	MPTDLAPALARKRAAQARLQIEINMMLFWSIIMFGLMFEFLA
Ga0182037_114439321	3300016404	Soil	MPTDLEVPARKRAAQAHAQTEITMLLFWLIMCLGLLFE
Ga0182039_100291921	3300016422	Soil	MPTDFEPVSARKRAAQAQAQPEITMLLFWLIICLGMVGLLFEVV
Ga0182039_122110032	3300016422	Soil	MPTDLAPALARKRAAQAQLQTQINMLLFSSIIMLGLMFEFLA
Ga0182038_116343591	3300016445	Soil	MPTDLDPAFARKRAAQSHAQTEITILLVWLIFCLGLLLVILGLFEVFGQ
Ga0187802_100384752	3300017822	Freshwater Sediment	MPTDVDKAFARKHAAQAKVQTEINIMLFWLIVCLGLLFEFLGSSP
Ga0187802_100434121	3300017822	Freshwater Sediment	MPTDVDQAFARKRAAQAKVQTEIAMLLFWLIMCLGLLFEFLGSGS
Ga0187802_100626111	3300017822	Freshwater Sediment	MPTDLAPAFARKRAAQAKLQTEITMLLFWLIVSLGLLFEFSS
Ga0187820_10004602	3300017924	Freshwater Sediment	MPTDVDQAFARKHEAQAKVQTEINIMLFWLIVCLGLLFEFLGSSS
Ga0187814_102945572	3300017932	Freshwater Sediment	MPTDVDQAFARKHAAQAKVQTEINIMLFWLIVCLGLLFEFLGSSS
Ga0187801_102164151	3300017933	Freshwater Sediment	MPTDVDQAFARKRAAQAKVQTEINILLFSLIVCLGLLFEFLGASS
Ga0187808_101592753	3300017942	Freshwater Sediment	MPTDVDKAFARKHAAQAKVQTEINIMLFWLIVCLGLLFEFLGSSS
Ga0187783_105323391	3300017970	Tropical Peatland	MPTDLDQAFARKRAAQAELQTEISMLLFWLIVCLGLLFEFLGNGS
Ga0187822_100131443	3300017994	Freshwater Sediment	MPTDVDQAFARKHAAQAKVQTEINIMLFWLIVCLGLLFEFLGSSP
Ga0187822_103435742	3300017994	Freshwater Sediment	MPTDVDQAFTRKRAAQAKVQTEIAMLLFWLIMCLGLLFEFLGSGS
Ga0126371_134451411	3300021560	Tropical Forest Soil	MPTDLAPALARKRAAQLQLQIEINMMLFWCIMMLGLFFEFIA
Ga0207693_106445871	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	MPTDLAPAFARKRAAQAQLQTEINMLLFWSIIMLGLMFEFLA
Ga0207700_108547993	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	SIMPTDLAPAFARKRAAQAKLQTEITMLLFWLIVSLGLLFEFLGNSS
Ga0208365_10031291	3300027070	Forest Soil	MPTDLDPAFARKRAAQAKVQTEITMLLFWLIMCLGLLFEFLGNSS
Ga0208365_10220492	3300027070	Forest Soil	ARKRAAQAKLQTEITMLLFWVIVSLGLLFEFLGNSS
Ga0209074_103391482	3300027787	Agricultural Soil	LGRKRAAQAKLQTEITVLLFWLIMCLGLLFEFLGNSS
Ga0318516_102749161	3300031543	Soil	MPTDLGPAFARKRAAQAKVQTEITMLLFWLIMCLGLLFEFLGNGS
Ga0318516_104940842	3300031543	Soil	MPTDFEPVSARKRAAQAQAQPEITMLLFWLIICLGMVGLLFEVVGK
Ga0318528_104705821	3300031561	Soil	MPTDLGPAFARKRAAQAKVQTEITMLLFWLIMCLGLLFEFLG
Ga0318528_107655211	3300031561	Soil	MPTDLAPAFARKRAAQAKLQTEITMLLFWLIICLGLLFEFLGNSS
Ga0310915_100972292	3300031573	Soil	MPTDLGPAFARKRAAQAKLQTEITMLLFWLIVSLGLLFEFLA
Ga0306918_102349031	3300031744	Soil	MPTDLGPAFARKRAAQAKLQTEITMLLFWLIVSLGLL
Ga0306918_106858682	3300031744	Soil	MPTDLAPVFARKRAAQAKLQTEIMMLLFWLIMWLGLLFEFLDS
Ga0306918_109818042	3300031744	Soil	FARKRAAQAKLQTEITMLLFWLIICLGLLFEFLGNSS
Ga0307475_100706714	3300031754	Hardwood Forest Soil	MPTDLDPAFARKRAAQAKVQTEITMLLFCLIVSFGLLFEFLG
Ga0307475_112609511	3300031754	Hardwood Forest Soil	LDPAFARKRAAQAKVQTEITMLLFWLIMCLGLLFEFLGNSS
Ga0318521_106280501	3300031770	Soil	MPTDLDPAFARKRAAQAKIQTEITMLLFWLIMCLGLLFEFL
Ga0318547_107042372	3300031781	Soil	MPTDLAPALARKRAAQAQLQIEINMMLFWSIIMFGLMFEFLAL
Ga0318547_107405582	3300031781	Soil	RYIMPTDFEPVSARKRAAQAQAQPEITMLLFWLIICLGMVGLLFEVVGK
Ga0318576_100235156	3300031796	Soil	MPTDLGPAFARKRAAQAKVQTEITMLLFWLIMCLG
Ga0318567_101023275	3300031821	Soil	MPTDLGPAFARKRAAQAKVQTEITMLLFWLIMCLGLLFEF
Ga0310917_100334325	3300031833	Soil	MPTDLAPAFARKRAAQAKLQTEITMLLFWLVVSLGLLFEFLGK
Ga0310917_109339461	3300031833	Soil	MRSTMPTDLAPAFARKRAAQAKLQTEITMLLFWLIICLGLL
Ga0310917_111930942	3300031833	Soil	MPTDLAPALARKRAAQAQLQIEINMMLFWSIIMFGLMFEFL
Ga0306919_104753263	3300031879	Soil	MPTDLAPALARKRAAQAQLQIEINMMLFWSIIMFGLMFEFLA
Ga0306919_104942131	3300031879	Soil	MRSTMPTDLAPAFARKRAAQAKLQTEITMLLFWLIICLGLLFE
Ga0318544_103095301	3300031880	Soil	MPTDLGPAFARKRAAQAKVQTEITMLLFWLIMCLGLLFE
Ga0306925_108823672	3300031890	Soil	MPTDLAPVFARKRAAQAKLQTEIMMLLFWLIMCLGLLFEFLDS
Ga0318551_102973182	3300031896	Soil	MPTDLAPAFARKRAAQAKLQTEITMLLFWLIICLG
Ga0306921_116786382	3300031912	Soil	MPTDLAPALARKRAAQAQLQTEINMMLFWSIIMFGLMFEFLA
Ga0310912_112820271	3300031941	Soil	MRSTMPTDLAPAFARKRAAQAKLQTEITMLLFWLIICLGLLFEFLGNSS
Ga0310913_101546543	3300031945	Soil	PIMPTDLGPAFARKRAAQAKLQTEIATLLFWLIVSLGLLFEFL
Ga0310910_111045531	3300031946	Soil	MPTDLAPVFARKRAAQAKLQTEIMMLLFWLIMWLGLLF
Ga0306926_126388551	3300031954	Soil	RKRAAQAKLQTEITMLLFWLIVSLGLLFEFLGNSS
Ga0306926_128415862	3300031954	Soil	MPTDLALALARKRAAQAHLMLLFGLIIMVGLMVEFLAFS
Ga0306922_107043914	3300032001	Soil	MPTDLDPAFARKRAAQAKIQTEITMLLFWLIMCLGLLFEFLGNSS
Ga0318559_103159731	3300032039	Soil	MPTDLAPAFARKRAAQAKLQTEITMLLFWLVVSLGLLFE
Ga0318577_105151961	3300032091	Soil	CFIGHSERWPIMPTDLAPAFARKRAAQAKLQTEITMLLFWLIICLGLLFEFLGNSS
Ga0307472_1015604331	3300032205	Hardwood Forest Soil	FARKRAAQAKLQTEITMLLFWLVVSLGLLFEFLGNSS
Ga0306920_1041349572	3300032261	Soil	TDLGPAFARKRAAQAKLQTEITMLLFWLIVSLGLLFEFLA
Ga0310914_101603541	3300033289	Soil	PAFARKRAAQAKLQTEITMLLFWLIVSLGLLFEFLA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F101642

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences