Metagenome / Metatranscriptome Family F101641

Basic Information
Family ID	F101641
Family Type	Metagenome / Metatranscriptome
Number of Sequences	102
Average Sequence Length	67 residues
Representative Sequence	MEDLRAELEAATAALREHLASWPYAYAMAGGCHGGAEHPALRAVRDEVDRLRTRCGDLRALIAEHG
Number of Associated Samples	86
Number of Associated Scaffolds	102

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	10.00 %
% of genes near scaffold ends (potentially truncated)	28.43 %
% of genes from short scaffolds (< 2000 bps)	89.22 %
Associated GOLD sequencing projects	83
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.72

Hidden Markov Model
Column number x ScaleMaximum Observed Maximum Theoretical Color SchemeDefault Consensus Colors CoordinatesModel Alignment

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Most Common Taxonomy
Group	Bacteria (62.745 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (42.157 % of family members)
Environment Ontology (ENVO)	Unclassified (37.255 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (51.961 % of family members)

Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80.82.84.86.88.90.92.94.96. 1C688J35102_1209827613 2Ga0062595_1002466853 3Ga0062592_1001377632 4Ga0070683_1005455701 5Ga0070683_1007671933 6Ga0068868_1004234191 7Ga0070660_1011610841 8Ga0070659_1019577731 9Ga0070684_1009176201 10Ga0068860_1013682521 11Ga0070712_1004123113 12Ga0070712_1004710182 13Ga0079219_106568322 14Ga0079219_109709682 15Ga0105248_114518881 16Ga0126313_106131373 17Ga0126308_104927782 18Ga0126306_101752842 19Ga0126306_107406062 20Ga0126372_110417051 21Ga0134127_127191262 22Ga0134121_112273952 23Ga0137374_103246762 24Ga0137374_103862731 25Ga0137374_106055321 26Ga0137372_101547043 27Ga0137369_110275271 28Ga0137375_104952522 29Ga0157334_10195021 30Ga0164300_102336253 31Ga0164298_103468781 32Ga0164298_116570581 33Ga0164301_109932791 34Ga0164302_103083523 35Ga0164308_105744542 36Ga0164305_113370802 37Ga0157369_107640463 38Ga0157369_121487432 39Ga0157375_109722171 40Ga0182008_102564242 41Ga0157376_121070902 42Ga0132258_120547332 43Ga0132256_1022837102 44Ga0132257_1021595522 45Ga0184605_102908852 46Ga0184608_100856272 47Ga0184617_10036632 48Ga0184618_100921152 49Ga0173481_107736411 50Ga0173482_101822693 51Ga0193705_10996032 52Ga0193701_10167741 53Ga0206353_119544303 54Ga0207687_104869153 55Ga0207644_111994752 56Ga0207690_102172132 57Ga0207669_113979381 58Ga0207689_101029053 59Ga0207679_119934922 60Ga0207640_102380523 61Ga0207677_100530673 62Ga0207677_110172151 63Ga0207702_125034941 64Ga0207676_112982592 65Ga0207675_1012273731 66Ga0207683_113764872 67Ga0209177_102266552 68Ga0247818_102571063 69Ga0307276_100128682 70Ga0307276_100438192 71Ga0307291_10051252 72Ga0307293_100911362 73Ga0307313_101707601 74Ga0307307_100186943 75Ga0307317_100185061 76Ga0307317_103058801 77Ga0307319_101215882 78Ga0307318_100896751 79Ga0307316_103339171 80Ga0307320_104283272 81Ga0307282_103771521 82Ga0307299_100131142 83Ga0307299_102622251 84Ga0307299_103973851 85Ga0307287_102516632 86Ga0307284_103728743 87Ga0307305_102152812 88Ga0307302_103637712 89Ga0307302_105944792 90Ga0307312_102326571 91Ga0307312_110990822 92Ga0307286_102434871 93Ga0307278_100052424 94Ga0307300_100742913 95Ga0307277_102270362 96Ga0307277_104625202 97Ga0307308_104870012 98Ga0307304_101764882 99Ga0307502_100039553 100Ga0308176_121686062 101Ga0308173_108610082 102Ga0372946_0057950_144_350
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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80.82.84.86.88.90.92.94.96. 1C688J35102_1209827613 2Ga0062595_1002466853 3Ga0068860_1013682521 4Ga0126372_110417051 5Ga0137369_110275271 6Ga0137375_104952522 7Ga0206353_119544303 8Ga0307276_100128682 9Ga0307313_101707601 10Ga0307320_104283272 11Ga0307299_103973851 12Ga0307304_101764882
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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66 1Ga0062595_1002466853 2C688J35102_1209827613 3Ga0070683_1007671933 4Ga0070684_1009176201 5Ga0068860_1013682521 6Ga0126306_101752842 7Ga0126306_107406062 8Ga0126372_110417051 9Ga0137374_103246762 10Ga0137374_103862731 11Ga0137374_106055321 12Ga0137372_101547043 13Ga0137375_104952522 14Ga0157334_10195021 15Ga0157375_109722171 16Ga0184605_102908852 17Ga0184618_100921152 18Ga0307276_100128682 19Ga0307313_101707601 20Ga0307320_104283272 21Ga0307299_102622251 22Ga0307299_103973851 23Ga0307308_104870012 24Ga0307304_101764882 25Ga0372946_0057950_144_350
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Neighboring Clusters of Orthologous Genes (COGs)

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 59.57% β-sheet: 0.00% Coil/Unstructured: 40.43%
Feature Viewer
Position : 0 Zoom : x 1 + Add Multiple Variants Enter the variants Position Original Variant Get Predictions Get Predictions Enter the variants Position Original Variant A / Ala R / Arg N / Asn D / Asp C / Cys E / Glu Q / Gln G / Gly H / His I / Ile L / Leu K / Lys M / Met F / Phe P / Pro S / Ser T / Thr W / Trp Y / Tyr V / Val
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Structure Viewer
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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.72
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.72
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SCOP family	SCOP domain	Representative PDB	TM-score
f.5.1.0: automated matches	d3pika_	3pik	0.86359
c.49.2.0: automated matches	d6rdps_	6rdp	0.84042
f.5.1.0: automated matches	d1yc9a_	1yc9	0.83993
a.26.1.1: Long-chain cytokines	d1cnt1_	1cnt	0.83602
a.4.5.0: automated matches	d5x14a1	5x14	0.83192

Pfam ID	Name	% Frequency in 102 Family Scaffolds
PF02074	Peptidase_M32	35.29
PF08240	ADH_N	3.92
PF01262	AlaDh_PNT_C	1.96
PF00107	ADH_zinc_N	1.96
PF01019	G_glu_transpept	1.96
PF07883	Cupin_2	0.98
PF01266	DAO	0.98
PF01475	FUR	0.98

COG ID	Name	Functional Category	% Frequency in 102 Family Scaffolds
COG2317	Zn-dependent carboxypeptidase, M32 family	Posttranslational modification, protein turnover, chaperones [O]	35.29
COG0405	Gamma-glutamyltranspeptidase	Amino acid transport and metabolism [E]	1.96
COG0735	Fe2+ or Zn2+ uptake regulation protein Fur/Zur	Inorganic ion transport and metabolism [P]	0.98

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	62.75 %
Unclassified	root	N/A	37.25 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	62.75 %
Unclassified	root	N/A	37.25 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	62.75 %
Unclassified	root	N/A	37.25 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	8.82 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	18.63 %
Unclassified	root	N/A	37.25 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	12.75 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	8.82 %
Unclassified	root	N/A	37.25 %

Name	Rank	Taxonomy	Distribution
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.98 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	8.82 %
Thermoleophilia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	3.92 %
Unclassified	root	N/A	37.25 %

Name	Rank	Taxonomy	Distribution
Micrococcales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	0.98 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	8.82 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	3.92 %
Unclassified	root	N/A	37.25 %

Name	Rank	Taxonomy	Distribution
Conexibacteraceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Conexibacteraceae	0.98 %
Microbacteriaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae	0.98 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	8.82 %
Unclassified	root	N/A	37.25 %

Name	Rank	Taxonomy	Distribution
Conexibacter	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Conexibacteraceae → Conexibacter	0.98 %
Frigoribacterium	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Frigoribacterium	0.98 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	8.82 %
Unclassified	root	N/A	37.25 %

Name	Rank	Taxonomy	Distribution
Conexibacter woesei	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Conexibacteraceae → Conexibacter → Conexibacter woesei	0.98 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	8.82 %
Unclassified	root	N/A	37.25 %
unclassified Frigoribacterium	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Frigoribacterium → unclassified Frigoribacterium	0.98 %

Name	Rank	Taxonomy	Distribution
Conexibacter woesei	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Conexibacteraceae → Conexibacter → Conexibacter woesei	0.98 %
Frigoribacterium sp. 9N	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Frigoribacterium → unclassified Frigoribacterium → Frigoribacterium sp. 9N	0.98 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	8.82 %
Unclassified	root	N/A	37.25 %

Visualization
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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300002568\|C688J35102_120982761	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Conexibacteraceae → Conexibacter → Conexibacter woesei	5281	Open in IMG/M
3300004479\|Ga0062595_100246685	Not Available	1154	Open in IMG/M
3300004480\|Ga0062592_100137763	Not Available	1606	Open in IMG/M
3300005329\|Ga0070683_100545570	All Organisms → cellular organisms → Bacteria → Proteobacteria	1108	Open in IMG/M
3300005329\|Ga0070683_100767193	All Organisms → cellular organisms → Bacteria	924	Open in IMG/M
3300005338\|Ga0068868_100423419	Not Available	1153	Open in IMG/M
3300005339\|Ga0070660_101161084	All Organisms → cellular organisms → Bacteria → Terrabacteria group	654	Open in IMG/M
3300005366\|Ga0070659_101957773	All Organisms → cellular organisms → Bacteria	526	Open in IMG/M
3300005535\|Ga0070684_100917620	Not Available	821	Open in IMG/M
3300005843\|Ga0068860_101368252	Not Available	729	Open in IMG/M

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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	74.51%
Host-Associated	Host-Associated	25.49%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	3.92%
Plants	Host-Associated → Plants	25.49%
Terrestrial	Environmental → Terrestrial	70.59%

Habitat	Taxonomy	Distribution
Rhizoplane	Host-Associated → Plants → Rhizoplane	11.76%
Rhizosphere	Host-Associated → Plants → Rhizosphere	13.73%
Sediment	Environmental → Aquatic → Sediment	3.92%
Soil	Environmental → Terrestrial → Soil	70.59%

Habitat	Taxonomy	Distribution
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	8.82%
Loam	Environmental → Terrestrial → Soil → Loam	5.88%
Soil	Host-Associated → Plants → Rhizosphere → Soil	6.86%
Soil	Host-Associated → Plants → Rhizoplane → Soil	0.98%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	64.71%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	6.86%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	3.92%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.96%

Habitat	Taxonomy	Distribution
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	2.94%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	4.90%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	4.90%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	0.98%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.98%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	55.88%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	8.82%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	6.86%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	6.86%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	3.92%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.96%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	0.98%

Habitat	Taxonomy	Distribution
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	2.94%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.96%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.98%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	3.92%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	2.94%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	1.96%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	1.96%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.96%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.98%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	3.92%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	3.92%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.96%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	0.98%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.98%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.98%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.98%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	3.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	42.16%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	2.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.98%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.98%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	2.94%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.98%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.98%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.96%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	0.98%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	5.88%

Visualization
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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300002568	Grasslands soil microbial communities from Hopland, California, USA - 2	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300004480	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4	Environmental	Open in IMG/M
3300005329	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG	Environmental	Open in IMG/M
3300005338	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2	Host-Associated	Open in IMG/M
3300005339	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG	Host-Associated	Open in IMG/M
3300005366	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG	Host-Associated	Open in IMG/M
3300005535	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG	Environmental	Open in IMG/M
3300005843	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2	Host-Associated	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M

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Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
C688J35102_1209827613	3300002568	Soil	MEQLRKELEEVGATLRERLAGRPYAFAMAGGCHGGAEQPALRAVGDEVDRLVERRDASFWPTLPR*
Ga0062595_1002466853	3300004479	Soil	MEDLRAELEAATAALREHLASWPYAYAMAGGCHGGAEHPALRAVRDEVDRLRTRCGDLRALIAEHG*
Ga0062592_1001377632	3300004480	Soil	MEDLRAELEAADAALREHLASWPYAYAMAGGCHGGAEHPALRAVRDEVERLRTRCGDLRALIAEHG*
Ga0070683_1005455701	3300005329	Corn Rhizosphere	MDDLRAELEATTAALRKHLASWPYAYAMAGGCHGGAEHPTLRAVRDEVDRLRTRCGDLRALIAEHG*
Ga0070683_1007671933	3300005329	Corn Rhizosphere	MEHLRAELDKATAALRELMAGWPYAYAMAGGCHGGSEHPVLRAVRDEADALRTRCGDLAARIAEHS*
Ga0068868_1004234191	3300005338	Miscanthus Rhizosphere	MEDLRAELEAATAALREYLASWPYAYAMAGGCHGGAEHPALRAVRDEVDRLRTRCGDLQALIAEHG*
Ga0070660_1011610841	3300005339	Corn Rhizosphere	MEDLRAELEAATAALREYLASWPYAYAMAGGCHGGPEHPALRAVRDEADRLRTRCGDLRALIAEQG*
Ga0070659_1019577731	3300005366	Corn Rhizosphere	MEDLRAELEAATAALREHLASWPYAYAMAGGCHGGAEHPALRAVRDEADRLRTRCGDLRALIAEHG*
Ga0070684_1009176201	3300005535	Corn Rhizosphere	MEHLRAELETATTSLRELMASWPYAFAMAGGCHGGAEHPTLRAVRREVAELRTRCGDLEALIAEHR*
Ga0068860_1013682521	3300005843	Switchgrass Rhizosphere	RRSTACSVRLKDFRRWAEHHGWMEHLRAELETATAALRELMASWRYAFAMAGGCHGGAEHPALRAVRHEVAELRTRCGDLEARIAEHL*
Ga0070712_1004123113	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MEDLRAELEAATAALREYLASWPYAYAMAGGCHGGAEHPALRAVRDEADRLRTRCGDLRALIAEHG*
Ga0070712_1004710182	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	FRRWAEHHWWMEHLRAELETATAALRELMASWPYAFAMAGGCYGGAEHPTLCAVRHEVAALRTRCGDLEAQLAEHR*
Ga0079219_106568322	3300006954	Agricultural Soil	MEHLHAELEATTAALREHLASWPYAYAMAGGCHGGAEHPTLRAVRDEVDRLRTRCGDLRALIAEHG*
Ga0079219_109709682	3300006954	Agricultural Soil	MEDLRAELEATTAALRKHLASWPYAYAMAGGCHGGAEHPTLRAVRDEVDRLRTRCGDLRALIAEHG*
Ga0105248_114518881	3300009177	Switchgrass Rhizosphere	MEDLRAELEAATAALREHLASWPYAYAMAGGCHGGAEHPALRAVRDEADRLRTRCGDLRALIAERG*
Ga0126313_106131373	3300009840	Serpentine Soil	MEDLRAELEKVEAALREHLASWPYAFAMAGGCHGGAEHPTLKAVRDEVDRLRTRRADLEALIAEHG*
Ga0126308_104927782	3300010040	Serpentine Soil	MEDLRAELEMATAALREHFASWPYAYAMAGGCHGGAEHPALRAVRDEVDRLRTRCGDLRALIAEHG*
Ga0126306_101752842	3300010166	Serpentine Soil	MEDLRAELENVKAALREHLASWPYAFAMAGGCHGGAEHPTLRAVRDEVDRLRARCRDLEARLAELI*
Ga0126306_107406062	3300010166	Serpentine Soil	MDQLRAELEEATAALREHQASWPYAFAMAGGCHGGAEHPRLRAVREETDRLRARCLDLKARVAELTG*
Ga0126372_110417051	3300010360	Tropical Forest Soil	MEDLRTELEEATRALRAHLASWPYAFAVAGGCHGGADHPTLRAELEEVERLRTRCLDLQARIAEFD*
Ga0134127_127191262	3300010399	Terrestrial Soil	MEDLRAELDAATATLREHLASWPYAYAMAGGCHGGAEHPALRAVRDEVDRLRTRCGDLRTLIAEHG*
Ga0134121_112273952	3300010401	Terrestrial Soil	MEDLRAELEAATAALREHLASWPYAYAMAGGCHGGAEHPALRAVRDEVDRLRTRCGDLRALLAEHG*
Ga0137374_103246762	3300012204	Vadose Zone Soil	MEDLRAELEKVEAALREHLASWPYAFAMAGGCHGGAEHPTLKAVRDEVDRLRTRRGDLEALIAEHG*
Ga0137374_103862731	3300012204	Vadose Zone Soil	MEHLRDELEAATAALREQLASWPYAFAMAGGCHGGAEHPALRAVRDEVDRLRQRCRDLEARIAEHT*
Ga0137374_106055321	3300012204	Vadose Zone Soil	MEHLRAELEEATAALREHLASWPYAFAMAGGGHGGSQHPALRAVRDETARLHARCRDLEARIAELT*
Ga0137372_101547043	3300012350	Vadose Zone Soil	MEHLRAELEEATAELKAQLASWPYAFAMAGGCHGGAEHPTLRAVRDEVDRLRTRCRDLEARLAELT*
Ga0137369_110275271	3300012355	Vadose Zone Soil	MEQLRAELEDATAALRAQLASWAYAFAMAGGGHGGSQHPALRAVRDETARLHARCRDLEARIAELT*
Ga0137375_104952522	3300012360	Vadose Zone Soil	MVERLRADLEEATAALRAHKASWPYAFAMAGGCHGGAEHPSLRAVRNETDRLHARCLDLKALIAELTD*
Ga0157334_10195021	3300012509	Soil	MEHLHAELEATTAALREHLASWPYAYAMAGGCHGGAEHPTLRAVRDEVDRLRTRRGDLEALIAEHS*
Ga0164300_102336253	3300012951	Soil	MEDLRAELETATAALREHLASWQYAYAMAGGCHGGAEHPALCAVRDEVDRLRTRCGDLRARIAEHSQTADSV*
Ga0164298_103468781	3300012955	Soil	RTPQAFRRCADHHWAMEDLRAELEAATAALREHLASWPYAYAMAGGCHGGAEHPALRAVRDEVDRLRTRCGDLRALIAEHG*
Ga0164298_116570581	3300012955	Soil	MEDLRAELETATAALREHLASWQYAYAMAGGCHGGAEHPALCAVRDEVDRLRTRCGDLRARLAEHGQT
Ga0164301_109932791	3300012960	Soil	MEDLRAELETATAALREHLASWQYAYAMAGGCHGGAEHPALCAVRDEVDRLRTRCGDLRA
Ga0164302_103083523	3300012961	Soil	MEDLHAELETATAALREHLASWQYAYAMAGGCHGGAEHPALCAVRDEVDRLRTRCGDLRARLAEHGQTADSV*
Ga0164308_105744542	3300012985	Soil	AALREYLASWPYAYAMAGGCHGGAEHPALRAVRDEADRLRTRCGDLRALIAEHG*
Ga0164305_113370802	3300012989	Soil	MEDLRAELEAATAALREYLASWPYAYAMAGGCHGGAEHPALRAVRDEVDRLRTRCGDLRALIAEHG*
Ga0157369_107640463	3300013105	Corn Rhizosphere	MEDLRAELEAADAALREHLASWPYAYAMAGGCHGGAEHPALRAVRDEVDRLRTRCGDLRALIAEHG*
Ga0157369_121487432	3300013105	Corn Rhizosphere	MEHLRAELETATAALRELMASWPYAFAMAGGCYGGAEHPTLRAVRHEVAELRTRCGDLEARIAEHL*
Ga0157375_109722171	3300013308	Miscanthus Rhizosphere	MEHLRAELETATAALRELMASWPYAFAMAGGCYGGAEHPTLRAVRHEVAALRTRCGDLEAQLAEHR*
Ga0182008_102564242	3300014497	Rhizosphere	MEHLRAELETANAALRELMASWPYAFAMAGGCHGGAEHPRLRAVRREVAELRTRCGDLEARIAEHR*
Ga0157376_121070902	3300014969	Miscanthus Rhizosphere	MEHLRAELETATTSLRELMASWPYAFAMAGGCHGGAEHPTLRAVRHEVAELRTRCGDLEALIAEHR*
Ga0132258_120547332	3300015371	Arabidopsis Rhizosphere	MEDLRAELEAATAALREYLASWPYAYAMAGGCHGGAEHPALRAVRDEVDRLRTRCADLRALIAEHS*
Ga0132256_1022837102	3300015372	Arabidopsis Rhizosphere	MEHLYAELEATTAALREHLASWPYAYAMAGGCHGGAEHPTLRAVRDEVDRLRTRCGDLRALIAEHG*
Ga0132257_1021595522	3300015373	Arabidopsis Rhizosphere	WAMEHLHAELEATTAALREHLASWPYAFAMAGGCHGGAEHPSLRAVRDEVDRLRTRRGDLEALIAEHS*
Ga0184605_102908852	3300018027	Groundwater Sediment	MEDLRTELEKTSAALREHLASWPYAFAMAGGCHGGAEHPALRAVRDEVERLRTRCGDLEARIAEHS
Ga0184608_100856272	3300018028	Groundwater Sediment	MEDLRAELEMATAALGKHLASWPYAYAMAGGCHGGAEHPALRAVRDEVDRLRTRCGDLRALIAEHG
Ga0184617_10036632	3300018066	Groundwater Sediment	MEDLRAELDMATAALGKHLASWPYAYAMAGGCHGGAEHPALRAVRDEVDRLRTRCGDLRALIAEHG
Ga0184618_100921152	3300018071	Groundwater Sediment	MEHLRDELEKATAALREHIASWPYAFAMAGGCHGGAEHPALRSVRDEVDRLRTRCSDLEARIAEHS
Ga0173481_107736411	3300019356	Soil	TAALRELMAGWPYAYAMAGGCHGGAEHPTLRAVRDEVDRLRTRCGDLRALIAEHG
Ga0173482_101822693	3300019361	Soil	MEDLRAELEAADAALREHLASWPYAYAMAGGCHGGAEHPALRAVRDEVERLRTRCGDLRALIAEHG
Ga0193705_10996032	3300019869	Soil	MEDLRAELEMATAALGKHLASWPYAYAMAGGCHGGSEHPALRAVRDEVDRLRTRCGDLRALIAEH
Ga0193701_10167741	3300019875	Soil	WAMEDLRAELEMATAALGKHLASWPYAYAMAGGCHGGSEHPALRAVRDEVDRLRTRCGDLRALIAEHG
Ga0206353_119544303	3300020082	Corn, Switchgrass And Miscanthus Rhizosphere	MEHLRAELDKATAALRELMAGWPYAYAMAGGCHGGSEHPVLRAVRDEADALRTRCGD
Ga0207687_104869153	3300025927	Miscanthus Rhizosphere	MEDLRAELEDATAALREHLASWPYAYAMAGGCHGGAEHPALRAVRDEVDRLRTRCGDLQALIAEHG
Ga0207644_111994752	3300025931	Switchgrass Rhizosphere	MEDLRAELEAATAALREYLASWPYAYAMAGGCHGGAEHPALRAVRDEADRLRTRCGDLRALIAEQG
Ga0207690_102172132	3300025932	Corn Rhizosphere	MEDLRAELEDATAALREHLASWPYAYAMAGGCHGGAEHPALRAVRDEADRLRTRCGDLRALIAEHG
Ga0207669_113979381	3300025937	Miscanthus Rhizosphere	MEDLRAELEAATAALREHLASWPYAYAMAGGCHGGAEHPALRAVRDEVDRLRTRCGDLQALIAEH
Ga0207689_101029053	3300025942	Miscanthus Rhizosphere	MEHLRAELDKATAALRELMAGWPYAYAMAGGCHGGSEHPVLRAVRDEADALRTRCGDLAARIAEHS
Ga0207679_119934922	3300025945	Corn Rhizosphere	CRCADEHRWMEHLRAELDKATAALRELMAGWPYAYAMAGGCHGGSEHPVLRAVRDEADALRTRCGDLAARIAEHS
Ga0207640_102380523	3300025981	Corn Rhizosphere	MEDLRAELEAATAALREHLASWPYAYAMAGGCHGGAEHPALRAVRDEVDRLRTRCGDLRALIAEHG
Ga0207677_100530673	3300026023	Miscanthus Rhizosphere	MDHLRAELDKATAALRELMAGWPYAYAMAGGCHGGSEHPVLRAVRDEADALRTRCGDLAARIAEHS
Ga0207677_110172151	3300026023	Miscanthus Rhizosphere	ELEAATAALREHLASWPYAYAMAGGCHGGAEHPALRAVRDEVDRLRTRCGDLQALIAEHG
Ga0207702_125034941	3300026078	Corn Rhizosphere	MEHLRAELEATTAALREHLASWPYAYAMAGGCHGGAEHPTLRAVRDEVDRLRTRCGDLRALIAEHD
Ga0207676_112982592	3300026095	Switchgrass Rhizosphere	MEHLRAELETATAALRELMASWPYAFAMAGGCHGGAEHPALRAVRHEVAELRTRCGDLEARIAEHL
Ga0207675_1012273731	3300026118	Switchgrass Rhizosphere	MEDLRAELEDATAALREHLASWPYAYAMAGGCHGGAEHPALRAVRDEVDRLRTRCGDL
Ga0207683_113764872	3300026121	Miscanthus Rhizosphere	LTRAELETATASLRELMASWPYAFAMAGGCHGGAEHPTLRAVRHEVAELRTRCGDLEALIAEHR
Ga0209177_102266552	3300027775	Agricultural Soil	CADHHWRMEDLRAELEATTAALRKHLASWPYAYAMAGGCHGGAEHPTLRAVRDEVDRLRTRCGDLRALIAEHG
Ga0247818_102571063	3300028589	Soil	MEDLRAELEAATAALREHLASWPYAYAMAGGCHGGAEHPALRAVRDEVDRLRTRCGDLQALIAEHG
Ga0307276_100128682	3300028705	Soil	MLDVVDQLQNELDEAMAALRAHLASWPYAFSTAGGWHAGGEHPALSAVRDENERLRARCRSLRARIAELS
Ga0307276_100438192	3300028705	Soil	EHLRAELEATTAALREHLASWPYAYAMAGGCHGGAEHPTLRAVRDEVDRLRTRCGDLRALIAEHD
Ga0307291_10051252	3300028707	Soil	MEHLRAELEATTAALREHLASWPYAYAMAGGCHGGAEHPALRAVRDEVDRLRTRCGDLRALIAEHG
Ga0307293_100911362	3300028711	Soil	MEDLRAELEMATAALGKHLASWPYAYAMAGGCHGGSEHPALRAVRDEVDRLRTRCGDLRALIAEHG
Ga0307313_101707601	3300028715	Soil	RPSGRGVLLALPQGFRRCADHHVGMEHLRAELEKVTAALREQIASWPYAFAMAGGCNGGAEHPTLRAVRDEVEQLRRRCGDLEARIAEHT
Ga0307307_100186943	3300028718	Soil	MEDLRAELEATTAALRKHLASWPYAYAMAGGCHGGAEHPALRAVRDEVERLRTRCGDLRALIAEHG
Ga0307317_100185061	3300028720	Soil	MEDLRAELEMATAALGKHLASWPYAYAMAGGCHGGAEHPALRAVRDEVDRLRTRC
Ga0307317_103058801	3300028720	Soil	AALGKHLASWPYAYAMAGGCHGGAEHPALRAVRDEVDRLRTRCGDLRALIAEHG
Ga0307319_101215882	3300028722	Soil	MEHLRTELEKASAALREHLASWPYAFAMAGGCHGGAEHPTLRAVRDEVERLRTRCGDLEARIAEHS
Ga0307318_100896751	3300028744	Soil	GMEHLRTELEEASAALREHLASWPYAFAMAGGCHGGAEHPALRAVRDEVERLRTRCGDLEARIAEHS
Ga0307316_103339171	3300028755	Soil	EEASAALREHLASWPYAFAMAGGCHGGAEHPALRAVRDEVERLRTRCGDLEARIAEHS
Ga0307320_104283272	3300028771	Soil	MGVVDQLQAELDQATAELREHLASWPYAFAMAGGCHGGSEHPALRAVRDENERLRARCRDLHARLAEFT
Ga0307282_103771521	3300028784	Soil	HHWAMEHLRAELEATTAALREHLASWPYAYAMAGGCHGGAEHPALRAVRDEVDRLRTRCGDLRALIAEHG
Ga0307299_100131142	3300028793	Soil	MEDLRAELEMATAALGKHLASWPYAYAMAGGCHGGSEHPALRAVRDEVDRLRTRCGDLRALIAERG
Ga0307299_102622251	3300028793	Soil	MEHLRAELDKATAALREHLASWPYAFAMAGGCHGGAEHPALRAVRDEVQRLRIRCGDLEARIAEHS
Ga0307299_103973851	3300028793	Soil	MDQLRVELEEANAALREHMASWPYAFAMAGGCHGGSEHSALRAVREETDRLRARCLDLKARIAERA
Ga0307287_102516632	3300028796	Soil	CADHHWAMEDLRAELEMATAALGKHLASWPYAYAMAGGCHGGSEHPALRAVRDEVDRLRTRCGDLRALIAEHG
Ga0307284_103728743	3300028799	Soil	MEDLRAELEMATAALGKHLASWPYAYAMAGGCHGGSEHPALRAVRDEVDRLRTR
Ga0307305_102152812	3300028807	Soil	MEHLRAELEKVTAALREQIASWPYAFAMAGGCNGGAEHPTLRAVRDEVEQLRRRCGDLEARIAEHT
Ga0307302_103637712	3300028814	Soil	DHHGGMEDLRTELEKASAALREHLASWPYAFAMAGGCHGGAEHPALRAVRDEVERLRTRCGDLEARIAEHS
Ga0307302_105944792	3300028814	Soil	MGVVDQLQAELDQATAELREHLASWPYAFAMAGGCHGGSEHPALRAVRDENERLRARCRDLRARLAEFT
Ga0307312_102326571	3300028828	Soil	MDQLRVELQEANAALREHMASWPYAFAMAGGCHGGSEHSALRAVREETDRLRARCLDLKARIAELA
Ga0307312_110990822	3300028828	Soil	TPQGFRRCADHHWAMEHLRAELEATTAALREHLASWPYAYAMAGGCHGGAEHPALRAVRDEVDRLRTRCGDLRALIAEHG
Ga0307286_102434871	3300028876	Soil	ADHHLRMEDLRAELEKVQAALREHLASWPYAFAMAGGCHGGAEHPSLRAVRDEVDRLRTRRGDLEALIAEHS
Ga0307278_100052424	3300028878	Soil	MEHLRAELDEATAALRAHLASWPYAFAMAGGCHGGAEHPTLRAVRDEVDRLRARCRDLEARLAELI
Ga0307300_100742913	3300028880	Soil	MGVVDQLQAELDQATAELREHLASWPYAFAMAGSCHGGSEHPALRAVRDENERLRARCRDLHARLAEFT
Ga0307277_102270362	3300028881	Soil	MEHLRAELEKATAALREHLASWPYAFAMAGGCHGGAEHPTLRAVRDEVERLRIRCGDLEARIAEHS
Ga0307277_104625202	3300028881	Soil	MEDLRTELEKASAALREHLASWPYAFAMAGGCHGGAEHPALRAVRDEVERLRTRCGDLEARIAEHS
Ga0307308_104870012	3300028884	Soil	MVERIRAELGEASAALRAHKASWPYAFAMAGGCHGGSEHPALRAVREETDRLHTRCLDLKALIAELTD
Ga0307304_101764882	3300028885	Soil	MHELEAELQEAIAALRAHLASWPYAFAMAGGCNGGSEHPQLREVREENERLRARCRHLRARIAELSA
Ga0307502_100039553	3300031164	Soil	MEHLRAELEKATAALREHLASWPYAFAMAGGCHGGAEHPALRAVRDEVDRLRTRCGDLEARIAEHS
Ga0308176_121686062	3300031996	Soil	MEDLRVELEATTAALREHLASWPYAYAMAGGCHGGAEHPTLRAVRDEVDRLRTRCGDLRALIAEHG
Ga0308173_108610082	3300032074	Soil	MEHLRAELEATTAALREHLASWPYAYAMAGGCHGGAEHPTLRAVRDEVDRLRTRCGDLRALIAEHG
Ga0372946_0057950_144_350	3300034384	Soil	MEDLRAELEKVTAALREHLASWQYAFAMAGGCHGGAEHPTLRAVRAEVERLRRRCGDLEARIAEHLIA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F101641

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Structural matches with SCOPe domains

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences