Metagenome / Metatranscriptome Family F101631

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F101631
Family Type	Metagenome / Metatranscriptome
Number of Sequences	102
Average Sequence Length	49 residues
Representative Sequence	VSTGDLPSPLRHFLAQLDELRSADILDMDQVGRLLVELAADEEY
Number of Associated Samples	91
Number of Associated Scaffolds	102

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	89.00 %
% of genes near scaffold ends (potentially truncated)	89.22 %
% of genes from short scaffolds (< 2000 bps)	82.35 %
Associated GOLD sequencing projects	90
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.59

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (70.588 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (16.667 % of family members)
Environment Ontology (ENVO)	Unclassified (21.569 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (56.863 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 41.67% β-sheet: 0.00% Coil/Unstructured: 58.33%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.59
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.59
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 102 Family Scaffolds
PF05199	GMC_oxred_C	10.78
PF00723	Glyco_hydro_15	4.90
PF03572	Peptidase_S41	1.96
PF03476	MOSC_N	1.96
PF08757	CotH	1.96
PF07690	MFS_1	1.96
PF00924	MS_channel	0.98
PF03949	Malic_M	0.98
PF00326	Peptidase_S9	0.98
PF02781	G6PD_C	0.98
PF13404	HTH_AsnC-type	0.98
PF00667	FAD_binding_1	0.98
PF00082	Peptidase_S8	0.98
PF13304	AAA_21	0.98
PF00248	Aldo_ket_red	0.98
PF09338	Gly_reductase	0.98
PF01850	PIN	0.98
PF00282	Pyridoxal_deC	0.98
PF04199	Cyclase	0.98
PF01037	AsnC_trans_reg	0.98
PF00390	malic	0.98
PF01925	TauE	0.98

COG ID	Name	Functional Category	% Frequency in 102 Family Scaffolds
COG2303	Choline dehydrogenase or related flavoprotein	Lipid transport and metabolism [I]	10.78
COG3387	Glucoamylase (glucan-1,4-alpha-glucosidase), GH15 family	Carbohydrate transport and metabolism [G]	4.90
COG0281	Malic enzyme	Energy production and conversion [C]	1.96
COG0793	C-terminal processing protease CtpA/Prc, contains a PDZ domain	Posttranslational modification, protein turnover, chaperones [O]	1.96
COG3217	N-hydroxylaminopurine reductase subunit YcbX, contains MOSC domain	Defense mechanisms [V]	1.96
COG5337	Spore coat protein CotH	Cell wall/membrane/envelope biogenesis [M]	1.96
COG0076	Glutamate or tyrosine decarboxylase or a related PLP-dependent protein	Amino acid transport and metabolism [E]	0.98
COG0364	Glucose-6-phosphate 1-dehydrogenase	Carbohydrate transport and metabolism [G]	0.98
COG0369	Flavoprotein (flavin reductase) subunit CysJ of sulfite and N-hydroxylaminopurine reductases	Nucleotide transport and metabolism [F]	0.98
COG0668	Small-conductance mechanosensitive channel	Cell wall/membrane/envelope biogenesis [M]	0.98
COG0686	Alanine dehydrogenase (includes sporulation protein SpoVN)	Amino acid transport and metabolism [E]	0.98
COG0730	Sulfite exporter TauE/SafE/YfcA and related permeases, UPF0721 family	Inorganic ion transport and metabolism [P]	0.98
COG1878	Kynurenine formamidase	Amino acid transport and metabolism [E]	0.98
COG3264	Small-conductance mechanosensitive channel MscK	Cell wall/membrane/envelope biogenesis [M]	0.98

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	70.59 %
Unclassified	root	N/A	29.41 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	70.59 %
Unclassified	root	N/A	29.41 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	70.59 %
Unclassified	root	N/A	29.41 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	51.96 %
Unclassified	root	N/A	29.41 %
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	0.98 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.98 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	45.10 %
Unclassified	root	N/A	29.41 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	2.94 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.98 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	0.98 %

Name	Rank	Taxonomy	Distribution
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	39.22 %
Unclassified	root	N/A	29.41 %
unclassified Chloroflexi	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi	2.94 %
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	0.98 %
Rickettsiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	29.41 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	23.53 %
Micromonosporales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales	5.88 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	2.94 %
Streptomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales	1.96 %
Streptosporangiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	0.98 %
unclassified Candidatus Rokubacteria	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria	0.98 %
Rickettsiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	29.41 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	23.53 %
Micromonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae	5.88 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	2.94 %
Streptomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	1.96 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	0.98 %
Treboniaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae	0.98 %
Rickettsiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	29.41 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	23.53 %
Hamadaea	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Hamadaea	5.88 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	2.94 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	1.96 %
Trebonia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia	0.98 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	0.98 %
Rickettsiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	29.41 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	23.53 %
Hamadaea flava	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Hamadaea → Hamadaea flava	5.88 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	2.94 %
Trebonia kvetii	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	0.98 %
unclassified Streptomyces	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → unclassified Streptomyces	0.98 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	0.98 %
Rickettsiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	29.41 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	23.53 %
Hamadaea flava	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Hamadaea → Hamadaea flava	5.88 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	2.94 %
Streptomyces sp. MBT84	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → unclassified Streptomyces → Streptomyces sp. MBT84	0.98 %
Trebonia kvetii	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	0.98 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	0.98 %
Rickettsiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales	0.98 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2189573004\|GZGWRS402GDDA3	All Organisms → cellular organisms → Bacteria	509	Open in IMG/M
3300001384\|JGI20190J14840_1019763	Not Available	569	Open in IMG/M
3300004080\|Ga0062385_10320267	Not Available	897	Open in IMG/M
3300004082\|Ga0062384_100382095	Not Available	902	Open in IMG/M
3300005162\|Ga0066814_10033424	All Organisms → cellular organisms → Bacteria	782	Open in IMG/M
3300005169\|Ga0066810_10117884	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	605	Open in IMG/M
3300005338\|Ga0068868_100953214	Not Available	783	Open in IMG/M
3300005434\|Ga0070709_11006734	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	663	Open in IMG/M
3300005435\|Ga0070714_100073191	All Organisms → cellular organisms → Bacteria	2968	Open in IMG/M
3300005435\|Ga0070714_100240571	All Organisms → cellular organisms → Bacteria	1670	Open in IMG/M
3300005468\|Ga0070707_100772414	All Organisms → cellular organisms → Bacteria	924	Open in IMG/M
3300005518\|Ga0070699_101276363	All Organisms → cellular organisms → Bacteria	674	Open in IMG/M
3300005535\|Ga0070684_100098070	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2614	Open in IMG/M
3300005536\|Ga0070697_100410279	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1176	Open in IMG/M
3300005547\|Ga0070693_100142102	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1512	Open in IMG/M
3300005614\|Ga0068856_100099545	All Organisms → cellular organisms → Bacteria	2898	Open in IMG/M
3300005764\|Ga0066903_102402647	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	1019	Open in IMG/M
3300005764\|Ga0066903_102563672	Not Available	988	Open in IMG/M
3300005843\|Ga0068860_101195063	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	781	Open in IMG/M
3300006047\|Ga0075024_100546005	Not Available	615	Open in IMG/M
3300006175\|Ga0070712_100854475	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	783	Open in IMG/M
3300006175\|Ga0070712_100968074	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	735	Open in IMG/M
3300006575\|Ga0074053_10021418	Not Available	2102	Open in IMG/M
3300006581\|Ga0074048_10007279	All Organisms → cellular organisms → Bacteria → Terrabacteria group	2292	Open in IMG/M
3300006606\|Ga0074062_10024095	All Organisms → cellular organisms → Bacteria	686	Open in IMG/M
3300006804\|Ga0079221_10307639	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	934	Open in IMG/M
3300006806\|Ga0079220_10233219	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1088	Open in IMG/M
3300006871\|Ga0075434_100017431	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	6920	Open in IMG/M
3300007258\|Ga0099793_10370439	Not Available	702	Open in IMG/M
3300009101\|Ga0105247_11687394	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	523	Open in IMG/M
3300009147\|Ga0114129_10948585	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1087	Open in IMG/M
3300009176\|Ga0105242_10762011	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	954	Open in IMG/M
3300009525\|Ga0116220_10300447	All Organisms → cellular organisms → Bacteria → Terrabacteria group	706	Open in IMG/M
3300009525\|Ga0116220_10475087	Not Available	565	Open in IMG/M
3300009698\|Ga0116216_10858926	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Hamadaea → Hamadaea flava	543	Open in IMG/M
3300009700\|Ga0116217_10506180	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	758	Open in IMG/M
3300009839\|Ga0116223_10291818	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	975	Open in IMG/M
3300010043\|Ga0126380_10386626	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Hamadaea → Hamadaea flava	1034	Open in IMG/M
3300010043\|Ga0126380_11153849	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	664	Open in IMG/M
3300010358\|Ga0126370_11764357	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	598	Open in IMG/M
3300010379\|Ga0136449_103265059	Not Available	625	Open in IMG/M
3300010379\|Ga0136449_103547968	Not Available	593	Open in IMG/M
3300010398\|Ga0126383_11877561	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	687	Open in IMG/M
3300010399\|Ga0134127_11001773	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	895	Open in IMG/M
3300010401\|Ga0134121_10086049	All Organisms → cellular organisms → Bacteria	2620	Open in IMG/M
3300011120\|Ga0150983_11694931	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Hamadaea → Hamadaea flava	750	Open in IMG/M
3300012206\|Ga0137380_11381894	All Organisms → cellular organisms → Bacteria	589	Open in IMG/M
3300012207\|Ga0137381_11183021	Not Available	657	Open in IMG/M
3300012356\|Ga0137371_10077465	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2577	Open in IMG/M
3300012958\|Ga0164299_11581461	Not Available	515	Open in IMG/M
3300012961\|Ga0164302_11606769	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales	541	Open in IMG/M
3300013100\|Ga0157373_11371124	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	537	Open in IMG/M
3300013296\|Ga0157374_11091558	All Organisms → cellular organisms → Bacteria	818	Open in IMG/M
3300013297\|Ga0157378_10146153	All Organisms → cellular organisms → Bacteria	2199	Open in IMG/M
3300014165\|Ga0181523_10383647	Not Available	784	Open in IMG/M
3300016357\|Ga0182032_10830440	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	782	Open in IMG/M
3300016445\|Ga0182038_10094094	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2157	Open in IMG/M
3300017966\|Ga0187776_10979822	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	620	Open in IMG/M
3300017973\|Ga0187780_10157895	Not Available	1574	Open in IMG/M
3300017974\|Ga0187777_10519495	Not Available	833	Open in IMG/M
3300017975\|Ga0187782_10906742	All Organisms → cellular organisms → Bacteria	684	Open in IMG/M
3300017975\|Ga0187782_11230489	Not Available	586	Open in IMG/M
3300017999\|Ga0187767_10256995	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	578	Open in IMG/M
3300018085\|Ga0187772_10761935	All Organisms → cellular organisms → Bacteria → Terrabacteria group	697	Open in IMG/M
3300019787\|Ga0182031_1466826	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Hamadaea → Hamadaea flava	1341	Open in IMG/M
3300020582\|Ga0210395_10300702	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Hamadaea → Hamadaea flava	1206	Open in IMG/M
3300021168\|Ga0210406_10115875	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	2268	Open in IMG/M
3300021180\|Ga0210396_10441103	Not Available	1143	Open in IMG/M
3300021181\|Ga0210388_10472044	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1102	Open in IMG/M
3300021402\|Ga0210385_10030377	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3495	Open in IMG/M
3300021403\|Ga0210397_10110811	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Hamadaea → Hamadaea flava	1868	Open in IMG/M
3300021403\|Ga0210397_11038755	Not Available	636	Open in IMG/M
3300021406\|Ga0210386_10508220	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → unclassified Streptomyces → Streptomyces sp. MBT84	1041	Open in IMG/M
3300021559\|Ga0210409_11499242	All Organisms → cellular organisms → Bacteria	550	Open in IMG/M
3300022507\|Ga0222729_1070143	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	516	Open in IMG/M
3300022523\|Ga0242663_1072138	Not Available	647	Open in IMG/M
3300025412\|Ga0208194_1052221	Not Available	630	Open in IMG/M
3300025634\|Ga0208589_1151720	Not Available	527	Open in IMG/M
3300025899\|Ga0207642_10702777	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	637	Open in IMG/M
3300025915\|Ga0207693_10004221	All Organisms → cellular organisms → Bacteria	12185	Open in IMG/M
3300025915\|Ga0207693_11312881	Not Available	541	Open in IMG/M
3300025928\|Ga0207700_10513222	Not Available	1061	Open in IMG/M
3300027684\|Ga0209626_1033157	Not Available	1266	Open in IMG/M
3300027884\|Ga0209275_10334258	All Organisms → cellular organisms → Bacteria	846	Open in IMG/M
3300027898\|Ga0209067_10869459	Not Available	528	Open in IMG/M
3300028592\|Ga0247822_11564142	Not Available	558	Open in IMG/M
3300028731\|Ga0302301_1013556	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	2495	Open in IMG/M
3300030520\|Ga0311372_12628296	Not Available	560	Open in IMG/M
3300031544\|Ga0318534_10070559	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1977	Open in IMG/M
3300031792\|Ga0318529_10038743	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2013	Open in IMG/M
3300031799\|Ga0318565_10161304	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1088	Open in IMG/M
3300031821\|Ga0318567_10768232	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	546	Open in IMG/M
3300031912\|Ga0306921_11230405	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	832	Open in IMG/M
3300031946\|Ga0310910_10545772	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	920	Open in IMG/M
3300032060\|Ga0318505_10058237	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1674	Open in IMG/M
3300032770\|Ga0335085_10119915	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	3359	Open in IMG/M
3300032770\|Ga0335085_12227798	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	550	Open in IMG/M
3300032898\|Ga0335072_10460278	All Organisms → cellular organisms → Bacteria	1336	Open in IMG/M
3300032954\|Ga0335083_10856162	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	725	Open in IMG/M
3300033158\|Ga0335077_11452329	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	659	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	89.22%
Host-Associated	Host-Associated	10.78%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	83.33%
Plants	Host-Associated → Plants	10.78%
Aquatic	Environmental → Aquatic	5.88%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	81.37%
Rhizosphere	Host-Associated → Plants → Rhizosphere	6.86%
Freshwater	Environmental → Aquatic → Freshwater	3.92%
Rhizoplane	Host-Associated → Plants → Rhizoplane	3.92%
Sediment	Environmental → Aquatic → Sediment	1.96%
Peat	Environmental → Terrestrial → Peat	1.96%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	50.98%
Loam	Environmental → Terrestrial → Soil → Loam	17.65%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	12.75%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	6.86%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	3.92%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	3.92%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.96%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	1.96%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	26.47%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	19.61%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	12.75%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	11.76%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	6.86%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	4.90%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	3.92%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	2.94%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.96%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.96%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	1.96%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	1.96%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	0.98%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.98%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	0.98%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	16.67%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	9.80%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	6.86%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	6.86%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	5.88%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	4.90%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	4.90%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	3.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	2.94%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	1.96%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	1.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.96%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.96%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	1.96%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	1.96%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	1.96%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	1.96%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	1.96%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	1.96%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	1.96%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	1.96%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.96%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	0.98%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	0.98%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grass Soil	0.98%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.98%
Bog	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog	0.98%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	0.98%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.98%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.98%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.98%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.98%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.98%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.98%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2189573004	Grass soil microbial communities from Rothamsted Park, UK - FG2 (Nitrogen)	Environmental	Open in IMG/M
3300001384	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 53-3 shallow-072012	Environmental	Open in IMG/M
3300004080	Coassembly of ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300004082	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3	Environmental	Open in IMG/M
3300005162	Soil and rhizosphere microbial communities from Laval, Canada - mgLAB	Environmental	Open in IMG/M
3300005169	Soil and rhizosphere microbial communities from Laval, Canada - mgHPA	Environmental	Open in IMG/M
3300005338	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2	Host-Associated	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005518	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG	Environmental	Open in IMG/M
3300005535	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG	Environmental	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005547	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG	Environmental	Open in IMG/M
3300005614	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2	Host-Associated	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005843	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2	Host-Associated	Open in IMG/M
3300006047	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2013	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006575	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLAA (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006581	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLPB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006606	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHMA (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006804	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200	Environmental	Open in IMG/M
3300006806	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100	Environmental	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300007258	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3	Environmental	Open in IMG/M
3300009101	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG	Host-Associated	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300009525	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_7_NC metaG	Environmental	Open in IMG/M
3300009698	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_3_AS metaG	Environmental	Open in IMG/M
3300009700	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_4_PS metaG	Environmental	Open in IMG/M
3300009839	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_a_PC metaG	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300010401	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1	Environmental	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300012206	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaG	Environmental	Open in IMG/M
3300012207	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaG	Environmental	Open in IMG/M
3300012356	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_40_16 metaG	Environmental	Open in IMG/M
3300012958	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG	Environmental	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300013100	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG	Host-Associated	Open in IMG/M
3300013296	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG	Host-Associated	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300014165	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_30_metaG	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300017966	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP12_20_MG	Environmental	Open in IMG/M
3300017973	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_20_MG	Environmental	Open in IMG/M
3300017974	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_10_MG	Environmental	Open in IMG/M
3300017975	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300017999	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP10_10_MG	Environmental	Open in IMG/M
3300018085	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300019787	Permafrost microbial communities from Stordalen Mire, Sweden - 812S3M metaG (PacBio error correction)	Environmental	Open in IMG/M
3300020582	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021180	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O	Environmental	Open in IMG/M
3300021181	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O	Environmental	Open in IMG/M
3300021402	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-O	Environmental	Open in IMG/M
3300021403	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O	Environmental	Open in IMG/M
3300021406	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O	Environmental	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300022507	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-27-M (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300022523	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-17-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300025412	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_19_10 (SPAdes)	Environmental	Open in IMG/M
3300025634	Arctic peat soil from Barrow, Alaska - NGEE Surface sample F53-2 shallow-092012 (SPAdes)	Environmental	Open in IMG/M
3300025899	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300027684	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_M2 (SPAdes)	Environmental	Open in IMG/M
3300027884	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2 (SPAdes)	Environmental	Open in IMG/M
3300027898	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2013 (SPAdes)	Environmental	Open in IMG/M
3300028592	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Cellulose_Day30	Environmental	Open in IMG/M
3300028731	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_E1_2	Environmental	Open in IMG/M
3300030520	III_Palsa_N2 coassembly	Environmental	Open in IMG/M
3300031544	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f26	Environmental	Open in IMG/M
3300031792	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f23	Environmental	Open in IMG/M
3300031799	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f21	Environmental	Open in IMG/M
3300031821	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f20	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300032060	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f18	Environmental	Open in IMG/M
3300032770	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5	Environmental	Open in IMG/M
3300032898	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.1	Environmental	Open in IMG/M
3300032954	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.2	Environmental	Open in IMG/M
3300033158	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.1	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
FG2_08057700	2189573004	Grass Soil	VNTGALPSPLRHFVAELDERSSGEALDMGQVGRLRGGAGR
JGI20190J14840_10197631	3300001384	Arctic Peat Soil	VSTGDFPGPLGHFLAQLDELRSGDILDMDQVGQLLVELAAEEEFFGPLIAEMPS
Ga0062385_103202671	3300004080	Bog Forest Soil	VSTGAFPGPLRHFLSQLDELRSGDILDMDQVGQLLVELAADEEYL
Ga0062384_1003820952	3300004082	Bog Forest Soil	VSTGAFPGPLRHFLSQLDELRSGDILDMDQVGQLLVELAADEEYLGP
Ga0066814_100334241	3300005162	Soil	MDISVLPSPLRRFLAQLDEVLLAGVLDMDQVGRVLVELAADEEYLGPLIAEI
Ga0066810_101178841	3300005169	Soil	VNTAALPGPLRHFLAQLDELRSGDAPDMGKVGAALVELAADQEF
Ga0068868_1009532141	3300005338	Miscanthus Rhizosphere	VSSDDLPGPLRHFLTRLDEMRSGSRLDMDKVGRLLVELAADEEYLGPLIAEIP
Ga0070709_110067341	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	VSTTALPGPLRHFLAQLDGLRSGDPPDMGQVGAALVELAADQEFFAPLIEQIPAGSPGVHWLV
Ga0070714_1000731911	3300005435	Agricultural Soil	VSTAALPGPLRHFVTQLDELRNGDVPDMDRVGRCLAELTADTEFFAPLIAEIP
Ga0070714_1002405711	3300005435	Agricultural Soil	MLPGPLRHFVTQLDELRNGDVPDMDRVGRCLAELTADTEFF
Ga0070707_1007724142	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	MDISALPSPLRRFLAQLDELRSADILDIDQGGGVLVELAADEEYLGPLIAEMPSESP
Ga0070699_1012763632	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	MDISALPSPLRRFLAQLDELRSADILDIDQVGRVLVELAADEEYLGPLIAEMPSES
Ga0070684_1000980703	3300005535	Corn Rhizosphere	VTIARGPLHPFLTRLDEMRSGNTLDMDRVGRLLVEPAADEEYLGPLIAEIPS
Ga0070697_1004102793	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	VSTGALPGPLRHFLAQLDELGSGDAPDMGKVGAALVELAADQEFFAPLIAHM
Ga0070693_1001421023	3300005547	Corn, Switchgrass And Miscanthus Rhizosphere	VNTGALPGPLRHFLAQLDELGSGDAPDMGKVGAALVELAADQEFFAPLIAQMPAGSPG
Ga0068856_1000995454	3300005614	Corn Rhizosphere	VSTGALPGPLRHFLAQLDELGSGDAPDMGKVGAALV
Ga0066903_1024026471	3300005764	Tropical Forest Soil	MTTGAHPAPLGHFLARLDELKPAGVPDMGEVGRLLVELAADEEYFAPLIAQMPAESPGVHWLA
Ga0066903_1025636721	3300005764	Tropical Forest Soil	MSTGAYPAPLHHFLAQLDEACASDVPDMDEVGRLLVELAAEEGYLAPLVAQMPAESPGVHWLAKP
Ga0068860_1011950631	3300005843	Switchgrass Rhizosphere	VSTGALPGPLRHFLAQLDELGSGDAPDMGKVGAALVELAADQEFFAPLIAHMPPGSPEVNWLIQP
Ga0075024_1005460051	3300006047	Watersheds	MDSDFPEPLRHFLAQLDELRSASIPDMDRVGRILVELAADEEY
Ga0070712_1008544751	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	VSTGTLPGPLHHFLAQLDELRSGDILDMDQVGRLLVELAAEEEFFWSADRGDAR*
Ga0070712_1009680741	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MSTTALPGPLRHFLAQLDELGSGDAPDMGKVGAALV
Ga0074053_100214183	3300006575	Soil	MDISVLPSPLRRFLAQLDEVRSAGVLDMDQVGRVLVELAADEEYLGPLIAE
Ga0074048_100072792	3300006581	Soil	MDISVLPSPLRRFLAQLDEVRSVGVLDMDQVGRVLVELAADEEYLGPLIAAMTAPCTAVTSRH*
Ga0074062_100240952	3300006606	Soil	MDISVLPSPLRRFLAQLDEVRSVGVLDMDQVGRVLVELAADEEYLGPLI
Ga0079221_103076393	3300006804	Agricultural Soil	VSTGALPGPLRHFLAQLDELGSGDAPDMGKVGAALVELAPTRSSSRR*
Ga0079220_102332191	3300006806	Agricultural Soil	VSTGTLPGPLRHFLAQLDELGSGDPPDMDQVGAALVELAADQEFFAPLIAEIHA
Ga0075434_1000174311	3300006871	Populus Rhizosphere	VSTGALPGPLRHFLAQLDGLRSGDVPDMGKVGAALVELAADQEFFAPLIAQMPAGS
Ga0099793_103704392	3300007258	Vadose Zone Soil	MDSDFPEPLRHFLAQLDELRSTCIPDMDRVGRLLTELAADEEYFGPLI
Ga0105247_116873941	3300009101	Switchgrass Rhizosphere	VNTGALPGPLRHFLAQLDELGSGDAPDMGKVGAALVEL
Ga0114129_109485853	3300009147	Populus Rhizosphere	VSTGTLPGPLRHFLAQLDELGSGDAPDMGEVGAALVELAADQEFFAPLIAQMPAGSPGGNWLVQP
Ga0105242_107620113	3300009176	Miscanthus Rhizosphere	VNTGALPGPLRHFLAQLDELGSGDAPDMGKVGAALVELAA
Ga0116220_103004472	3300009525	Peatlands Soil	VSTGDFPSPLRHFLAQLDELRSAEILDMDQVGRLLVELAADEEYLGPLI
Ga0116220_104750871	3300009525	Peatlands Soil	VSTGDFPSPLRHFLAQLDELRSADILDMDQVGRLLVELA
Ga0116216_108589261	3300009698	Peatlands Soil	VSTGDLPSPLRHFLAQLDELRSADILDMDQVGRLLVELAADEEY
Ga0116217_105061802	3300009700	Peatlands Soil	MADVSTGAFPGPLRHFLAQLDELRSGDILDMDQVGRLLVGLAADEEYLGPLIAEMPAE
Ga0116223_102918182	3300009839	Peatlands Soil	VSTGAFPGPLRRFLAQLDELRSADILDMDQVGRLLMELA
Ga0126380_103866262	3300010043	Tropical Forest Soil	VSPAAPAAPLRHFLAQLDELNSRDAIDMDEVGRALVELAADEEYF
Ga0126380_111538492	3300010043	Tropical Forest Soil	VTTGALPSPLRHFLAQLDELGTGGTPDMGQVGAALVEL
Ga0126373_131326721	3300010048	Tropical Forest Soil	VTEDAGTGALPSPLSHFLAQLDKLRAGGAPDMDAIGRLLTELAADDEFFAPLIAGMPPA
Ga0126370_117643571	3300010358	Tropical Forest Soil	VTTAALPGPLRHFLTQLEELRSGDPPDMGQVGAALVELA
Ga0136449_1032650591	3300010379	Peatlands Soil	VSTAALPGPLRHFLAQLDELRSGDILDMGQVGRLLVELAADEEYLGPLIAEMPS
Ga0136449_1035479681	3300010379	Peatlands Soil	VSTGVYPGPLRQFLARLEELRSGGILDMDQVGQLLVELAADEEYFGPLIAE
Ga0126383_105578361	3300010398	Tropical Forest Soil	MSTGALPGPVRRLMAQLDELRPGGVPDMDEVGRLLTELAADEEHF
Ga0126383_118775612	3300010398	Tropical Forest Soil	MSTGALPSPLRNFLAQLDERSSGEALEMGQVGRLL
Ga0134127_110017731	3300010399	Terrestrial Soil	VNTGALPGPLRHFLAQLDELGSGDAPDMGKVGAALVELAADQEFF
Ga0134121_100860491	3300010401	Terrestrial Soil	VSTGALPGPLRHFLAQLDELGSGDAPDMGKVGAALVELAADQ
Ga0150983_116949312	3300011120	Forest Soil	VDNSALPSPLRHFLAQLDELRSVGVPDMDKVGRLLVELAADEDYLG
Ga0137380_113818942	3300012206	Vadose Zone Soil	MDISVLPSPLRRFLAQLDELRSAGILDMGQVGRVLVELAAD
Ga0137381_111830211	3300012207	Vadose Zone Soil	VDIGVLLSPLRRFLAQLDELRSAGILDMGQVGRVLVELAADQEYLGPLIAEMPS
Ga0137371_100774651	3300012356	Vadose Zone Soil	VTTGALPSPLRSFLARLDELPAGDAPDMDQVGRALVELAADEAFFAPLIARMPAGEPPARAPAPTR*
Ga0164299_115814611	3300012958	Soil	VNSDDLPGPLRHFLDRLDEMRSGSTLDMDKVGRLLVELAADEEYLGPLIAEI
Ga0164302_116067691	3300012961	Soil	VNSDDFPGPLRHFLTRLDELRSEKTLDMDRVGRLLVDLAADEEYLGPLIAEIPSES
Ga0157373_113711242	3300013100	Corn Rhizosphere	VNTGALPGPLRHFLAQLDELGSGDAPDMGKVGAALVELAADQEFFAPLIAQMPA
Ga0157374_110915582	3300013296	Miscanthus Rhizosphere	MDISVLPSPIRRFLAQLDEVRSAGVLDMDQVGRVLVELAADEEYFSPLIAEMPSES
Ga0157378_101461531	3300013297	Miscanthus Rhizosphere	VNTGALPGPLRHFLAQLDELGSGDAPDMGKVGAALVELAADQEFFAPLIA
Ga0181523_103836472	3300014165	Bog	VSTGAFPGPLRHFLAQLDELRSGDILNMDQVGRLLVELAADEEYLG
Ga0182032_108304402	3300016357	Soil	VSTGALPDPLRRFLTQLAELRSGGSPDMDQVGRLLVELAADEEFFAPLIAEMPADSP
Ga0182038_100940944	3300016445	Soil	VSTAALPGPLRHFLAQVDELSSGDPPDMGQVGVALVELAADQEFFAPL
Ga0187776_109798222	3300017966	Tropical Peatland	VSTGALPGPLRHFAAELDELRSGGVPDMGQVGRLLV
Ga0187780_101578952	3300017973	Tropical Peatland	VSTGSLPGPLRHFLAQLDEFGASDAPDMGQVGRALAGLASDEDLFAPLIAEIPPEAPG
Ga0187777_105194951	3300017974	Tropical Peatland	VGRVSTASLPSPLRHFLAQLDELGAGDAPDMGQVGQVLVELAADED
Ga0187782_109067421	3300017975	Tropical Peatland	VSTGDLPGPIRHFLAQLQELRPVDRPAMDQLGRLLVELAADEEF
Ga0187782_112304892	3300017975	Tropical Peatland	VSTAPLPSPLRHFVAQLDEQRSADLPDMDKVGRLLVELAADEEFFDPL
Ga0187767_102569951	3300017999	Tropical Peatland	VSTAALPGPLRSFLAQLDELCSGDPPDMGQVGAALVELAADQEFFAPLIAQIPAASPGV
Ga0187772_107619351	3300018085	Tropical Peatland	VSTAPLPSPLRHFLARLDGLRSPGVPDMDQVGRLLVELAADEEFFEPLIAEL
Ga0182031_14668263	3300019787	Bog	VSTSAFPGPLRHFLAQLDELRAGDILDMDQVGRLLVELAADEEYLG
Ga0210395_103007022	3300020582	Soil	VDNSALPSPLRHFLAHLDELRSVGVPDMDKVGRLLVELAADED
Ga0210406_101158752	3300021168	Soil	MDSDSPEPLRHFLAQLDELRSASIPDMGRVGRLLTELAADEEVFRSADR
Ga0210396_104411031	3300021180	Soil	MDSDFPEPLRHFLAQLDELRSADTPDMDQVGRLLV
Ga0210388_104720443	3300021181	Soil	VSTGAFPGPLRHFLAQLEELRSGDILDMDQVGQLLVELAADEEYLGPLIAEM
Ga0210385_100303775	3300021402	Soil	VDNSALPSPLRHFLAQLDELRSVGVPDMDKVGRLLVELAAREDYLGPLIAEIPSEEP
Ga0210397_101108111	3300021403	Soil	VDISGLPGPLRHFLAHLDELRSVGVPDMDKVGRLLVELA
Ga0210397_110387551	3300021403	Soil	VSTGAVPGPLRSFLAQLDELRSGDILDMDQVGRLLVELAADEEYLGPL
Ga0210386_105082202	3300021406	Soil	MSTGDVPSPLRQFLTQLAELRSAEILDMDQVGRLLVE
Ga0210409_114992422	3300021559	Soil	MDISALPSPLRRFQAQLDELRSADILDIDQVGRVLVELAADEEYLGPLIAEMPS
Ga0222729_10701432	3300022507	Soil	MDSDVPEPLRHFLAQLDELRSASIPDMGRVGRLLTELAADEEVFRSADR
Ga0242663_10721382	3300022523	Soil	MDSDFPEPLRHFLAQLDELRSASIPDMDRVGRLLTELAADEEVFRSADR
Ga0208194_10522212	3300025412	Peatland	VSTGAFPGPIRHFLAQLDELRSGDILDMDRVGRLLVELAAEEEF
Ga0208589_11517202	3300025634	Arctic Peat Soil	VSSGDLPGPLRHFLAQLDELRSGDILDMDQVGRLLVELAAEEEFFGPLIA
Ga0207642_107027772	3300025899	Miscanthus Rhizosphere	VNTGALPGPLRHFLAQLDELGSGDAPDMGKVGAALVELAADQEFFAP
Ga0207693_1000422114	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	VTTGAYPYPLRRFLVQLDELRHDDAPDMNQVGQLLVELAADEEYF
Ga0207693_113128811	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	VSTAALPGPLRDFTAQLDELRSGGIPDMDRVGRHLAELAADTEFFAPLIAEIPS
Ga0207700_105132221	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	MDSDFPEPLRHFLAQLDELRSVSIPDMDRVGRLLTELAADKEYFGP
Ga0209626_10331571	3300027684	Forest Soil	MSTGDFPSPLRHFLTQLAELRSADTPDMDQVGRLLVELAADEEYLGPLIAEMPSQ
Ga0209275_103342582	3300027884	Soil	VDISALPGPLRHFLAHLDELRSVGTPDMDKVGRLLVEL
Ga0209067_108694592	3300027898	Watersheds	MTYDPLRHFADRLDEARSADVVDMDQVGRLLVELAADEEFFGPL
Ga0247822_115641421	3300028592	Soil	VNSDDLPGPLRHFLTRLDEMRSGSTVDMDQVGRLLVELAADEEYLGPLIAEIPSE
Ga0302301_10135561	3300028731	Palsa	VSSGAFPGPLGHFMAQLDEVRSGDILDMEQVGRLLVELAADEEFFGPLI
Ga0311372_126282962	3300030520	Palsa	MSTGAFPGPLGHFMAQLDEVRSGDILDMEQVGRLLVE
Ga0318534_100705591	3300031544	Soil	VSTAALPGPLRHFLAQVDELSSGDPPDMGQVGVALVELA
Ga0318529_100387431	3300031792	Soil	MSAGPYPAPLRRFLAQLDALRSGGVPAMDQVGRLLVGLAADEEYFAPLV
Ga0318565_101613041	3300031799	Soil	VSTGALPDPLRRFLTQLAELRSGGSPDMDQVGRLLVELAADEEFFAPLIAEMPAD
Ga0318567_107682322	3300031821	Soil	VSTTALSGPLRHFLAQVDELSSGDPPDMGQVGVALVELAADQEFFAPLIAQIPPASPGVHWLVQP
Ga0306921_112304051	3300031912	Soil	MSAGAHPAPLRHFMAQLDELGSSDVPDMDEVGRLLVELAADEEYFAPLVAAMPAESPGVH
Ga0310910_105457721	3300031946	Soil	VSTAALPGPLRHFLAQVDELSSGDPPDMGQVGVALVELAADQ
Ga0318505_100582373	3300032060	Soil	VSTAALPGPLRHFLTQLDELRSGNPPDMGQVGVALVELAADQEFFAPLIAQIPAASMGVQ
Ga0335085_101199153	3300032770	Soil	VTTGALPSPLRHFFTQLDELGPGGTPDMGKVGAALVELAADQEFFAPLIAQMPAGSPAVHWPLTGRCACS
Ga0335085_122277981	3300032770	Soil	VSTSALPGPLRHFVDQLDELRSGDVPDMDEVGRLLVELAADEEYFAPLIAAMR
Ga0335072_104602781	3300032898	Soil	VQVSQYPSPLRHLLTQLDELQAEDSLDMSKVGQLLVELAAD
Ga0335083_108561621	3300032954	Soil	VTTGALPSPLRHFFTQLDELGPGGTPDMGKVGAALVELAADQEFFAPLIAQMPAGSPAVHWPL
Ga0335077_114523292	3300033158	Soil	VTTGALPSPLRHFFTQLDELGPGGTPDMGKVGAALVELAADQEFFAPLIAQMPAGSPA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F101631

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences