Metagenome / Metatranscriptome Family F101628

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F101628
Family Type	Metagenome / Metatranscriptome
Number of Sequences	102
Average Sequence Length	63 residues
Representative Sequence	VGVAVAHNEQTRYKRYWAMVIAEKPPKKKEPKVAAERKTAERQESAGSSENPISTIKNFVCKYLC
Number of Associated Samples	83
Number of Associated Scaffolds	102

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	98.04 %
% of genes from short scaffolds (< 2000 bps)	92.16 %
Associated GOLD sequencing projects	75
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.28

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (93.137 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (13.725 % of family members)
Environment Ontology (ENVO)	Unclassified (38.235 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (60.784 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 38.71% β-sheet: 0.00% Coil/Unstructured: 61.29%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.28
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.28
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 102 Family Scaffolds
PF01494	FAD_binding_3	7.84
PF04909	Amidohydro_2	5.88
PF04392	ABC_sub_bind	4.90
PF03061	4HBT	4.90
PF09996	DUF2237	2.94
PF03401	TctC	1.96
PF00535	Glycos_transf_2	1.96
PF13531	SBP_bac_11	1.96
PF08241	Methyltransf_11	1.96
PF13924	Lipocalin_5	0.98
PF03928	HbpS-like	0.98
PF12697	Abhydrolase_6	0.98
PF03411	Peptidase_M74	0.98
PF03972	MmgE_PrpD	0.98
PF00590	TP_methylase	0.98
PF01344	Kelch_1	0.98
PF05036	SPOR	0.98
PF07719	TPR_2	0.98
PF01011	PQQ	0.98
PF13360	PQQ_2	0.98
PF13570	PQQ_3	0.98
PF12680	SnoaL_2	0.98
PF13489	Methyltransf_23	0.98
PF07369	DUF1488	0.98
PF13561	adh_short_C2	0.98
PF01557	FAA_hydrolase	0.98
PF00188	CAP	0.98
PF00106	adh_short	0.98

COG ID	Name	Functional Category	% Frequency in 102 Family Scaffolds
COG0654	2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases	Energy production and conversion [C]	15.69
COG0578	Glycerol-3-phosphate dehydrogenase	Energy production and conversion [C]	7.84
COG0644	Dehydrogenase (flavoprotein)	Energy production and conversion [C]	7.84
COG0665	Glycine/D-amino acid oxidase (deaminating)	Amino acid transport and metabolism [E]	7.84
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	4.90
COG3181	Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctC	Energy production and conversion [C]	1.96
COG2079	2-methylcitrate dehydratase PrpD	Carbohydrate transport and metabolism [G]	0.98
COG2340	Spore germination protein YkwD and related proteins with CAP (CSP/antigen 5/PR1) domain	Cell cycle control, cell division, chromosome partitioning [D]	0.98
COG3770	Murein endopeptidase MepA (D-alanyl-D-alanine-endopeptidase)	Cell wall/membrane/envelope biogenesis [M]	0.98

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	93.14 %
Unclassified	root	N/A	6.86 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	93.14 %
Unclassified	root	N/A	6.86 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	93.14 %
Unclassified	root	N/A	6.86 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	75.49 %
Unclassified	root	N/A	6.86 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	62.75 %
Unclassified	root	N/A	6.86 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	2.94 %

Name	Rank	Taxonomy	Distribution
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	36.27 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	12.75 %
Unclassified	root	N/A	6.86 %
unclassified Betaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria	2.94 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	36.27 %
Unclassified	root	N/A	6.86 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	3.92 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	2.94 %
unclassified Hyphomicrobiales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales	1.96 %
Boseaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Boseaceae	0.98 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	36.27 %
Unclassified	root	N/A	6.86 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	3.92 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	2.94 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1.96 %
Bosea	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Boseaceae → Bosea	0.98 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	36.27 %
Unclassified	root	N/A	6.86 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	3.92 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	2.94 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1.96 %
Bosea lathyri	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Boseaceae → Bosea → Bosea lathyri	0.98 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2070309004\|prs_FIHLEPW02SBY5N	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	511	Open in IMG/M
2088090014\|GPIPI_16607611	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1005	Open in IMG/M
3300000579\|AP72_2010_repI_A01DRAFT_1073883	Not Available	507	Open in IMG/M
3300000597\|AF_2010_repII_A1DRAFT_10012915	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2300	Open in IMG/M
3300000651\|AP72_2010_repI_A10DRAFT_1028973	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	709	Open in IMG/M
3300000655\|AF_2010_repII_A100DRAFT_1022754	All Organisms → cellular organisms → Bacteria	1177	Open in IMG/M
3300000793\|AF_2010_repII_A001DRAFT_10066555	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	783	Open in IMG/M
3300000893\|AP72_2010_repI_A001DRAFT_1036351	All Organisms → cellular organisms → Bacteria	774	Open in IMG/M
3300000955\|JGI1027J12803_100290316	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	606	Open in IMG/M
3300000955\|JGI1027J12803_108509718	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	557	Open in IMG/M
3300001545\|JGI12630J15595_10015222	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1647	Open in IMG/M
3300001545\|JGI12630J15595_10038774	All Organisms → cellular organisms → Bacteria	968	Open in IMG/M
3300002245\|JGIcombinedJ26739_100194646	All Organisms → cellular organisms → Bacteria → Proteobacteria	1917	Open in IMG/M
3300003505\|JGIcombinedJ51221_10161647	All Organisms → cellular organisms → Bacteria	906	Open in IMG/M
3300004281\|Ga0066397_10002849	All Organisms → cellular organisms → Bacteria	1690	Open in IMG/M
3300005181\|Ga0066678_10475293	Not Available	831	Open in IMG/M
3300005332\|Ga0066388_103529504	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	798	Open in IMG/M
3300005434\|Ga0070709_10635147	All Organisms → cellular organisms → Bacteria	825	Open in IMG/M
3300005437\|Ga0070710_10677498	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	725	Open in IMG/M
3300005439\|Ga0070711_101808033	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	536	Open in IMG/M
3300005544\|Ga0070686_101649043	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	543	Open in IMG/M
3300005713\|Ga0066905_100085432	All Organisms → cellular organisms → Bacteria	2090	Open in IMG/M
3300005713\|Ga0066905_100952306	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	754	Open in IMG/M
3300005713\|Ga0066905_101143235	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	693	Open in IMG/M
3300005713\|Ga0066905_101211216	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	675	Open in IMG/M
3300005713\|Ga0066905_102325705	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	501	Open in IMG/M
3300005764\|Ga0066903_100830709	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1658	Open in IMG/M
3300005764\|Ga0066903_101906780	All Organisms → cellular organisms → Bacteria → Proteobacteria	1138	Open in IMG/M
3300005764\|Ga0066903_104440977	All Organisms → cellular organisms → Bacteria → Proteobacteria	749	Open in IMG/M
3300005764\|Ga0066903_109149484	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	500	Open in IMG/M
3300006028\|Ga0070717_10407853	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1221	Open in IMG/M
3300006031\|Ga0066651_10774489	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	519	Open in IMG/M
3300006050\|Ga0075028_100780078	All Organisms → cellular organisms → Bacteria	581	Open in IMG/M
3300006175\|Ga0070712_101048761	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	706	Open in IMG/M
3300006844\|Ga0075428_102060235	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	591	Open in IMG/M
3300006845\|Ga0075421_100010204	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	11601	Open in IMG/M
3300006854\|Ga0075425_100700220	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1163	Open in IMG/M
3300006880\|Ga0075429_101914841	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Boseaceae → Bosea → Bosea lathyri	514	Open in IMG/M
3300009156\|Ga0111538_10654798	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1331	Open in IMG/M
3300009168\|Ga0105104_10296408	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	888	Open in IMG/M
3300010046\|Ga0126384_10941272	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	783	Open in IMG/M
3300010046\|Ga0126384_11657651	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	604	Open in IMG/M
3300010048\|Ga0126373_10768264	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1024	Open in IMG/M
3300010359\|Ga0126376_12991231	All Organisms → cellular organisms → Bacteria	522	Open in IMG/M
3300010360\|Ga0126372_13276070	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	503	Open in IMG/M
3300010361\|Ga0126378_12144714	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	637	Open in IMG/M
3300010361\|Ga0126378_12216246	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	627	Open in IMG/M
3300010376\|Ga0126381_101534658	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	963	Open in IMG/M
3300010376\|Ga0126381_103908099	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	581	Open in IMG/M
3300011271\|Ga0137393_10501221	All Organisms → cellular organisms → Bacteria	1042	Open in IMG/M
3300012180\|Ga0153974_1085709	All Organisms → cellular organisms → Bacteria	708	Open in IMG/M
3300012200\|Ga0137382_11294931	Not Available	515	Open in IMG/M
3300012205\|Ga0137362_10667122	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	895	Open in IMG/M
3300012930\|Ga0137407_10550847	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1080	Open in IMG/M
3300012961\|Ga0164302_11231050	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	600	Open in IMG/M
3300013306\|Ga0163162_11074393	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	911	Open in IMG/M
3300014325\|Ga0163163_13002756	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	526	Open in IMG/M
3300015371\|Ga0132258_11043455	All Organisms → cellular organisms → Bacteria	2066	Open in IMG/M
3300015374\|Ga0132255_100746052	All Organisms → cellular organisms → Bacteria → Proteobacteria	1457	Open in IMG/M
3300015374\|Ga0132255_103322306	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	685	Open in IMG/M
3300016270\|Ga0182036_11770119	All Organisms → cellular organisms → Bacteria → Proteobacteria	522	Open in IMG/M
3300016319\|Ga0182033_11825128	Not Available	552	Open in IMG/M
3300016341\|Ga0182035_10408254	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1143	Open in IMG/M
3300016357\|Ga0182032_10950422	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	732	Open in IMG/M
3300016387\|Ga0182040_11365043	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	599	Open in IMG/M
3300016387\|Ga0182040_11410034	Not Available	590	Open in IMG/M
3300017936\|Ga0187821_10322398	All Organisms → cellular organisms → Bacteria → Proteobacteria	618	Open in IMG/M
3300017993\|Ga0187823_10317708	All Organisms → cellular organisms → Bacteria → Proteobacteria	546	Open in IMG/M
3300018053\|Ga0184626_10130534	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1068	Open in IMG/M
3300019887\|Ga0193729_1023312	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2667	Open in IMG/M
3300019890\|Ga0193728_1042328	All Organisms → cellular organisms → Bacteria	2236	Open in IMG/M
3300020579\|Ga0210407_10867605	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	693	Open in IMG/M
3300021406\|Ga0210386_10783029	All Organisms → cellular organisms → Bacteria	820	Open in IMG/M
3300021478\|Ga0210402_11439684	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	616	Open in IMG/M
3300021560\|Ga0126371_10699780	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1161	Open in IMG/M
3300021560\|Ga0126371_11461030	Not Available	813	Open in IMG/M
3300021560\|Ga0126371_12010342	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	695	Open in IMG/M
3300025906\|Ga0207699_10566572	All Organisms → cellular organisms → Bacteria	825	Open in IMG/M
3300025915\|Ga0207693_11166653	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	582	Open in IMG/M
3300025916\|Ga0207663_10113265	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1844	Open in IMG/M
3300026325\|Ga0209152_10503086	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	501	Open in IMG/M
3300026508\|Ga0257161_1097368	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	612	Open in IMG/M
3300027537\|Ga0209419_1048059	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	827	Open in IMG/M
3300027603\|Ga0209331_1134973	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	591	Open in IMG/M
3300028047\|Ga0209526_10079399	All Organisms → cellular organisms → Bacteria	2311	Open in IMG/M
3300031093\|Ga0308197_10109011	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	832	Open in IMG/M
3300031573\|Ga0310915_10455341	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	909	Open in IMG/M
3300031668\|Ga0318542_10632937	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	559	Open in IMG/M
3300031681\|Ga0318572_10466492	All Organisms → cellular organisms → Bacteria → Proteobacteria	752	Open in IMG/M
3300031720\|Ga0307469_10681032	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	930	Open in IMG/M
3300031796\|Ga0318576_10329958	All Organisms → cellular organisms → Bacteria	721	Open in IMG/M
3300031845\|Ga0318511_10416554	All Organisms → cellular organisms → Bacteria → Proteobacteria	617	Open in IMG/M
3300031879\|Ga0306919_10198572	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1490	Open in IMG/M
3300031879\|Ga0306919_10347984	All Organisms → cellular organisms → Bacteria	1132	Open in IMG/M
3300031890\|Ga0306925_11102261	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	802	Open in IMG/M
3300031890\|Ga0306925_12022098	All Organisms → cellular organisms → Bacteria → Proteobacteria	543	Open in IMG/M
3300031910\|Ga0306923_12115421	Not Available	567	Open in IMG/M
3300031912\|Ga0306921_10238759	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2129	Open in IMG/M
3300031912\|Ga0306921_12622147	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	520	Open in IMG/M
3300031942\|Ga0310916_10332626	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1289	Open in IMG/M
3300031947\|Ga0310909_10220793	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1579	Open in IMG/M
3300032001\|Ga0306922_10889062	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	926	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	89.22%
Host-Associated	Host-Associated	10.78%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	84.31%
Plants	Host-Associated → Plants	9.80%
Aquatic	Environmental → Aquatic	4.90%
Fungi	Host-Associated → Fungi	0.98%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	84.31%
Rhizosphere	Host-Associated → Plants → Rhizosphere	4.90%
Rhizoplane	Host-Associated → Plants → Rhizoplane	3.92%
Freshwater	Environmental → Aquatic → Freshwater	2.94%
Sediment	Environmental → Aquatic → Sediment	1.96%
Roots	Host-Associated → Plants → Roots	0.98%
Mycelium	Host-Associated → Fungi → Mycelium	0.98%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	57.84%
Loam	Environmental → Terrestrial → Soil → Loam	26.47%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	4.90%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	2.94%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	1.96%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.96%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.98%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.98%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.98%
Unclassified	Host-Associated → Fungi → Mycelium → Unclassified	0.98%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	31.37%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	19.61%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	17.65%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	8.82%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	5.88%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	4.90%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	2.94%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	1.96%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.96%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.98%
Tropical Rainforest	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest	0.98%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.98%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.98%
Unclassified	Host-Associated → Fungi → Mycelium → Unclassified → Unclassified	0.98%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	13.73%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	11.76%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	10.78%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	10.78%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	7.84%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	6.86%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	5.88%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	5.88%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	4.90%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	3.92%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	3.92%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	2.94%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	1.96%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	0.98%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.98%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.98%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.98%
Green-Waste Compost	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest → Green-Waste Compost	0.98%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.98%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.98%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	0.98%
Attine Ant Fungus Gardens	Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens	0.98%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2070309004	Green-waste compost microbial communities at University of California, Davis, USA, from solid state bioreactor - Luquillo Rain Forest, Puerto Rico	Environmental	Open in IMG/M
2088090014	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000579	Forest soil microbial communities from Amazon forest - Pasture72 2010 replicate I A01	Environmental	Open in IMG/M
3300000597	Forest soil microbial communities from Amazon forest - 2010 replicate II A1	Environmental	Open in IMG/M
3300000651	Forest soil microbial communities from Amazon forest - Pasture72 2010 replicate I A10	Environmental	Open in IMG/M
3300000655	Forest soil microbial communities from Amazon forest - 2010 replicate II A100	Environmental	Open in IMG/M
3300000793	Forest soil microbial communities from Amazon forest - 2010 replicate II A001	Environmental	Open in IMG/M
3300000893	Forest soil microbial communities from Amazon forest - Pasture72 2010 replicate I A001	Environmental	Open in IMG/M
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300001545	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300003505	Forest soil microbial communities from Harvard Forest LTER, USA - Combined assembly of forest soil metaG samples (ASSEMBLY_DATE=20140924)	Environmental	Open in IMG/M
3300004281	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 30 MoBio	Environmental	Open in IMG/M
3300005181	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_127	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005544	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006031	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Angelo_100	Environmental	Open in IMG/M
3300006050	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2014	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006880	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009168	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (6) Depth 19-21cm September2015	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300011271	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaG	Environmental	Open in IMG/M
3300012180	Attine ant fungus gardens microbial communities from Georgia, USA - TSGA058 MetaG	Host-Associated	Open in IMG/M
3300012200	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300017936	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_1	Environmental	Open in IMG/M
3300017993	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_3	Environmental	Open in IMG/M
3300018053	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_60_b1	Environmental	Open in IMG/M
3300019887	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1c2	Environmental	Open in IMG/M
3300019890	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1c1	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300021406	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300025906	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025916	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300026325	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_107 (SPAdes)	Environmental	Open in IMG/M
3300026508	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NR-01-A	Environmental	Open in IMG/M
3300027537	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_M3 (SPAdes)	Environmental	Open in IMG/M
3300027603	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM3H0_M3 (SPAdes)	Environmental	Open in IMG/M
3300028047	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300031093	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_198 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031668	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f23	Environmental	Open in IMG/M
3300031681	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f20	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031796	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f24	Environmental	Open in IMG/M
3300031845	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f18	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
prs_05780550	2070309004	Green-Waste Compost	VAHNEQTRYKTYWAMVIAEKPSKKKEPKLAAERKTVERQASAISSENPISTIKNFVCKYL
GPIPI_02597430	2088090014	Soil	VIAEQPSKKKEPKVAAERKTAERQASAGSSENPIGTIKNFVCKYLC
AP72_2010_repI_A01DRAFT_10738831	3300000579	Forest Soil	HNANLLQSKADTVGVAVAHNEQTRYKRYWAMVIAEKPPKKKEPKVAAERKTAERQESAGSSENPISTIKNFVCKYLC*
AF_2010_repII_A1DRAFT_100129154	3300000597	Forest Soil	YWAMVIAEKPSKKKEPKVTAERKTAERQESVGSPENPISTIKNFVCKYLC*
AP72_2010_repI_A10DRAFT_10289732	3300000651	Forest Soil	ANLLQSKADTVGVAVAHNEQTRYKRYWAMVIAEKPPKKKEPKVAAERKTAERQESAGSSENPISTIKNFVCKYLC*
AF_2010_repII_A100DRAFT_10227541	3300000655	Forest Soil	NLLQSKADIVGVAVAXNEQTRYKTYWAMVIAEKPSKKKEPKIAAERKVAEHQESSSENPISTIKNFVCKYLC*
AF_2010_repII_A001DRAFT_100665553	3300000793	Forest Soil	TRYKRYWAMVIAEKPSKKKEPKVAAERKTAERQESAGSSENPISTIKNFVCKYLC*
AP72_2010_repI_A001DRAFT_10363513	3300000893	Forest Soil	LLQSKADTVGVAVAHNEQTRYKRYWAMVIAEKPPKKKEPKVAAERKTAERQESAGSSENPISTIKNFVCKYLC*
JGI1027J12803_1002903161	3300000955	Soil	LQSRADSVGVAVARNDQTMYKTFWAMVIAEKSPKKKDRKAAAEGEHRESVATGENPISAIKSFVCRFLC*
JGI1027J12803_1085097181	3300000955	Soil	LLQSKADSIGVAVARNEGTRYKTFWAMVIAEKLPKKKERKMAEEIILRRGDSENSENPISAAKSFVCKYLC*EPQTSFTTYSCGGSYL
JGI12630J15595_100152221	3300001545	Forest Soil	VGVAVARNEHTRYKTFWAMVIAEKPPKRTDPKVASAGESFERRENSRSSENPIGALKNFVCQYLC*
JGI12630J15595_100387742	3300001545	Forest Soil	PGHNANLLQARADSVGVAVARNEQARYKTFWAMVIAEKSPKSKERRAAAEGGPHESVETVENPISAVKNFVCKYLC*
JGIcombinedJ26739_1001946461	3300002245	Forest Soil	SVGVAVARNEQTRYKTFWAMVIAEKSPKSKERRAAAEGGPQESVETVENPISAVKNFVCKYLC*
JGIcombinedJ51221_101616471	3300003505	Forest Soil	DQTRYKTFWAMVIAEKLPKSKERRAAAGGGPHESVETVENPISAVKNFVCKYLC*
Ga0066397_100028492	3300004281	Tropical Forest Soil	KTRYKTYWAMVIAEKPAPKKKEKEPKVAAERKTAARQDSAPRQESASRTENPLSTIKDFVCKYLC*
Ga0066678_104752932	3300005181	Soil	ADSVGVAVARNDQTRYKTYWAMVIADTSPKKKDRKVAAQEKNVERHESSVNSENPLTTVKNFVCKYPC*
Ga0066388_1035295041	3300005332	Tropical Forest Soil	VARNEQTRYKTYWAMVIAEKPSKKKEPKVAAERKTAERQEGAGSSENPMSTIKNLVCKYLC*
Ga0070709_106351472	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	TRYKTFWAMVIAEKLPKSKERRAAAEGGPHESVETVENPISAVKNFVCKYLC*
Ga0070710_106774981	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	ARNEQTRYKTYWAMVIAEQPSKKKEPKVAAERKTAERQANAGSSENPVSTIKNFVCKYLC
Ga0070711_1018080331	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	AVARNEQARYKTFWALVIAEKSPKKKERKVAAQEKAPPEKIPERPERSASAENPFSMVRNFVCKYLCQ*
Ga0070686_1016490431	3300005544	Switchgrass Rhizosphere	QSKADIVGVAVAHNEQTRYKTYWAMVIAEKASKKEPKVAAGRETADRGDIAGSSGNPIGTIKNFVCKYLC*
Ga0066905_1000854321	3300005713	Tropical Forest Soil	QARADSVGVAVARNEQTRYKTYWAMVIADKSPKKKDRKVAAQEKAAQEKHAERHESSINSENPLTTVKNFVCKYLC*
Ga0066905_1009523061	3300005713	Tropical Forest Soil	QARADSVGVAVARNEQTRYKTYWAMVIADKSPKKKDRKVATQEKAAPEKHAERHESSVNSENPLTTVKNFVCKYLC*
Ga0066905_1011432352	3300005713	Tropical Forest Soil	LQARADSVGIAVARNEQTRYKTYWAMVIADKSPKKKDRKTAALEKPAQEKNAERRESSTNSENPLTTVKNFVCKYLC*
Ga0066905_1012112162	3300005713	Tropical Forest Soil	LQARADSVGIAVARNEQTRYKTYWAMVIADKSPKKKDRKIAAPEKAAQEKNAERHENSMNSENPLTTVKNFVCKYLC*
Ga0066905_1023257052	3300005713	Tropical Forest Soil	ANLLLSKADIVGVAVARNEQTRYKTYWAMVIAEKSLKKKEPKVAAERKTAERQASAGSSENPIGTVKNFVCKYLC*
Ga0066903_1008307093	3300005764	Tropical Forest Soil	LSKADIVGVAVARNEQTRYKTYWAMVIAEKPSKKKEPKVATERKSAERQASAGSSENPIGTLKNFVCKYLC*
Ga0066903_1019067801	3300005764	Tropical Forest Soil	LSKADIVGVAVARNEQTRYKTYWAMVIAEKPSKKKEPKVAAERKTAERQASAENPISTIKNFVCKYLC*
Ga0066903_1044409771	3300005764	Tropical Forest Soil	VARNEQTRYKTYWAMVIAEKPSKKKEPKATAERKTAERQESAGSSDNPISTIKNLVCKYLC*
Ga0066903_1091494841	3300005764	Tropical Forest Soil	ANLLQARADSVGVAVARNEQTRYKTYWAMVIADKSPKKKDRKVAAQERNAERHESSTDSENPLTTVKNFVCKYLC*
Ga0070717_104078531	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	TRYKTYWAMVIAEQPSKKKEPKVAAERKTAERQASAGSSENPIGTIKNFVCKYLC*
Ga0066651_107744892	3300006031	Soil	DIVGVAVAHNDQTRYKTYWAMVIAAKPSKKKEPKLPAERKAAERQASAGGSENPISTIKNFVCKHLC*
Ga0075028_1007800782	3300006050	Watersheds	YKTYWAMVIAETPSKQEPKIAAVREPTKRRDSAGSSGNPISAIKNFVCKYLC*
Ga0070712_1010487611	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	ARNEQTRYKTYWAMVIAEQPSKKKEPKVAAERKTAERQASAGSSENPIGTIKNFVCKYLC
Ga0075428_1020602351	3300006844	Populus Rhizosphere	LQSKADIVGVAVARNDATRYKTYWALVIAEAPPKKKEPRVPAKKEPRAAAEPKNPERRESAGSSENPISTIKNFVCKYLC*
Ga0075421_1000102041	3300006845	Populus Rhizosphere	NLLQARADSVGVAVARNEQTPYKTYWAMVIADKTPKKKDRKVAAQEKNAERHESPTNSENPLTTVKNFVCKYLC*
Ga0075425_1007002201	3300006854	Populus Rhizosphere	QTRYKTYWAMVIAEKPSKKKEPKLAPERKAAEHQASAGGSENPISTIKNFVCQHLC*
Ga0075429_1019148411	3300006880	Populus Rhizosphere	GHNANLLQARADSVGVAIARNDQTRYKTYWAMVIADKSPKKKDRKVAAQEKNVERHESSVNSENPLTTVKNFVCKYLC*
Ga0111538_106547983	3300009156	Populus Rhizosphere	QAKADSVGFAVARNEQTRYKTYWAMVIADKTPKKKDRKVAAQEKNAERHESPTNSENPLTTVKNFVCKYLC*
Ga0105104_102964081	3300009168	Freshwater Sediment	PGHNANLLQSKADIVGVAVARNDQARYKTFWALVIAEKPPKGKDRKVAAERRISERQESVANSESPMSAMKNFICKYLC*
Ga0126384_109412721	3300010046	Tropical Forest Soil	NLLLSRADSLGVAVARNDQTRFKTFWAMVIAEKAPKKKDGKVQAQGGISERREASAAVENPISAVKNFVCKYFC*
Ga0126384_116576511	3300010046	Tropical Forest Soil	PGHNANLLQSKADSVGVAVARNEQTRYKTFWAMVIAEKSPKKKGRKVAAEGKILERHDSLASSENPLSAVKNFVCKYLCP*
Ga0126373_107682642	3300010048	Tropical Forest Soil	QTRYKTYWAMVIAEKPSKKKEPKVAAERKTAQRQESAASPENPMSTITNLVCKYLC*
Ga0126376_129912312	3300010359	Tropical Forest Soil	RYKRYWAMVIAEKPSKKKEPKVAAERRTADRQESAGHSENPISTIKDFVCKYLC*
Ga0126372_132760702	3300010360	Tropical Forest Soil	AHNEQTRYKTYWAMVIAAKPSKKKEPKLAAERKTVERQASAGSSENPISAIKDFVCKHLC
Ga0126378_121447143	3300010361	Tropical Forest Soil	GVAVARNDQTRYKTFWAMVIAEKSSKRKEHKVAAQESIVKRHESLANSEHPLSMVKNFVCKYLC*
Ga0126378_122162462	3300010361	Tropical Forest Soil	ANLLLSKADTVGVAVAHNDQTRYKTYWAMVIAEKPSKKKEPKPAAERKTVERQASAGSSENPISAIKDFVCKHLC*
Ga0126381_1015346582	3300010376	Tropical Forest Soil	WAMVIAEKPSKKKEPKVAAERKTAQRQESAASSENPMSTIKNLVCKYLC*
Ga0126381_1039080991	3300010376	Tropical Forest Soil	NANLLQSKADIVGVAVAYNEQTRYKTYWAMVIAEKPSEKEPKVAAERKTVERRDSAGNSGSPISAIKNFVCKYLC*
Ga0137393_105012211	3300011271	Vadose Zone Soil	VAVARNDQTRYKTFWAMVIAEKSPKRKDRKVAAEGGILERRESSGTSENPISTVKNFVCKYLC*
Ga0153974_10857092	3300012180	Attine Ant Fungus Gardens	VAVARNEQTRYKTYWAMVIAEKPSKKKKPELAAERKTAERQASAGSSENPISTIKNFVCKYQC*
Ga0137382_112949311	3300012200	Vadose Zone Soil	TYWTMVIAEVPPKKKEPRVAAERKASERHENVNSSENPISTIKNFVCKHLC*
Ga0137362_106671223	3300012205	Vadose Zone Soil	VGVAVARNEQTRYKTYWAMVIAEKPSKKKEPKVAAEGAIRGNNGNFGISEDPISTFKNTVCKFLC*
Ga0137407_105508473	3300012930	Vadose Zone Soil	RNDQTRHRTFLAMVIAEKPPERKDRKPADARISERRQDSGAFENLISMVKNFVCKYLC*
Ga0164302_112310502	3300012961	Soil	ARNDQTMYKTFWAMVIAEKSPKKKDRKAAAEGEHRESVATGENPISAIKSFVCRYLC*
Ga0163162_110743931	3300013306	Switchgrass Rhizosphere	NLLLSKADIVGVAVARNEQTRYKTYWAMVIAEQPSKKKEPKVAAERKTAERQANAGSSENPVSTIKNFVCKYLC*
Ga0163163_130027561	3300014325	Switchgrass Rhizosphere	MVIAEKASKKEPKVAAGRETADRGDIAGSSGNPIGTIKNFVCKYLC*
Ga0132258_110434551	3300015371	Arabidopsis Rhizosphere	EQTRYKTYWAMVIADKSPKKKDRKVAAQEKAAQEKHAERHESSINSENPLTTVKNFVCKYLC*
Ga0132255_1007460522	3300015374	Arabidopsis Rhizosphere	QSKANIVGVAVARNEQTRYKTYWAMVIAEKPSKKKEPQATERKTAERQESTDSAANPISTIKNFVCKYLC*
Ga0132255_1033223062	3300015374	Arabidopsis Rhizosphere	MVIAEMPRKKKEPKVAAEPKASERHESVSSSENPVSTIKNFVCKYLC*
Ga0182036_117701192	3300016270	Soil	NANLLQSRADSVGVAVARNDQTRYKTFWAMVIAEKPPKVKDRKVADGGSVERTQSSQTLEDPISAVKNFVCKYLC
Ga0182033_118251282	3300016319	Soil	WAEVIAEKPSKKKEPKVASERKTAEGQASVGSSENSISPIKNIVCKYLC
Ga0182035_104082543	3300016341	Soil	VGVAVARNEHTHYKTFWAMVIAEKPPKRADPKVASAGESFERRENLGSSENPISTLKNFVCKYLC
Ga0182032_109504223	3300016357	Soil	VARNEHTRYKTFWAMVIAERPPKRTDPKVASAGASFERRENSGSSENPISTLKSFVCKYL
Ga0182040_113650432	3300016387	Soil	ADIVGVAVARNEHTRYKTFWAMVIAEKPPKRADHKVASAGESFERRENLGSSENPISTLKNFVCKYLC
Ga0182040_114100341	3300016387	Soil	RYKTYWAMVIAEKPSKKEPKVAAGRETAERRDSAGSSGNPISTIKNFVCKYLC
Ga0187821_103223981	3300017936	Freshwater Sediment	HNEHTRYKTYWAMVIAEKPSKKEHKVAAGQETAERWDSAGSSGNPISTIKNFVCKYLC
Ga0187823_103177082	3300017993	Freshwater Sediment	WAMVIAEKPSTKKEPKVAVERETVERQRNAGHSENPINAIKNFVCKYLC
Ga0184626_101305341	3300018053	Groundwater Sediment	MVIAETPPKKKGPRVAAERKTSEHHESVGSSENPISTIKNFVCKYLC
Ga0193729_10233121	3300019887	Soil	YKTFWAMVIAEKSPKSKERRAAAEGGPHESVETVENPISAVKNFVCKYLC
Ga0193728_10423284	3300019890	Soil	KSPKSKERRAAAEGGPHESVETVENPISAVKNFVCKYLC
Ga0210407_108676052	3300020579	Soil	YKTYWALVIAEQPSKKKEPKVAAERKTAERQASAGSSENPIGTIKNFVCKYLC
Ga0210386_107830292	3300021406	Soil	EKLPKSKERRAAAEGGPHESVETVENPISAVKNFVCKYLC
Ga0210402_114396841	3300021478	Soil	LLSKADIVGVAVARNEQTRYKTYWAMVIAENPSKKKEPKLAAERKTAERQASVGSSENSISTIKNFVCKYLC
Ga0126371_106997802	3300021560	Tropical Forest Soil	GVAVAHNDQTRYKTYWAMVIAEKPSKKKEPKLAAERKTVERQASAGGSENPISAIKDFVCKHLC
Ga0126371_114610301	3300021560	Tropical Forest Soil	VGVAVAHNEQTRYKRYWAMVIAEKPPKKKEPKVAAERKTAERQESAGSSENPISTIKNFVCKYLC
Ga0126371_120103422	3300021560	Tropical Forest Soil	AVARNEQTRYKTYWAMVIAEKPSKKKEPKVTAERKTAERQESVGSPENPISTIKNFVCKYLC
Ga0207699_105665721	3300025906	Corn, Switchgrass And Miscanthus Rhizosphere	TRYKTFWAMVIAEKLPKSKERRAAAEGGPHESVETVENPISAVKNFVCKYLC
Ga0207693_111666531	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	YKTYWAMVIAEQPSKKKEPKVAAERKTAERQANAGSSENPVSTIKNFVCKYLC
Ga0207663_101132651	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	WAMVIAEKLPKSKERRAAAEGGPHESVETVENPISAVKNFVCKYLC
Ga0209152_105030862	3300026325	Soil	VARNDQTRFKSYWAMVIAEKAPKTKDRKVAADAGSSAPRESRASSENPITTLKNFVCKYF
Ga0257161_10973682	3300026508	Soil	KTFWAMVIAEKSPKSKERRAAAEGGPHESVETVENPISAVKNFVCKYLC
Ga0209419_10480591	3300027537	Forest Soil	RADSVGVAVARNDQTRYKTFWAMVIAEKLPKSKERRAAAEGGPHESVETVENPISAVKNFVCKYLC
Ga0209331_11349732	3300027603	Forest Soil	ARNEHTRYKTFWAMVIAEKPPKRTDPKVASAGESFGRRENSGSSENPIGALKNFVCQYLC
Ga0209526_100793991	3300028047	Forest Soil	PGHNANLLQARADSVGVAVARNEQARYKTFWAMVIAEKSPKSKERRAAAEGGPHESVETVENPISAVKNFVCKYLC
Ga0308197_101090112	3300031093	Soil	VIAEKPSKKKEPKVAAERKTAERQANAGSSENPVSTIKSFVCKYLC
Ga0310915_104553413	3300031573	Soil	QSKADIVGVAVARNEHTRYKTFWAMVIAEKPPKRADHKVASAGESFERRENLGSSENPISTLKNFVCKYLC
Ga0318542_106329371	3300031668	Soil	IVGVAVAHNEQTRYKTYWAMVIAEKPSKKKEPKLAAERKTVERQASAISSENPISTIKNFVCKYLC
Ga0318572_104664922	3300031681	Soil	NDQTRYKTFWAMVIAEKSPKGKDRKVADGASIQRSQGSQTFEDPISAVKNFVCKYLC
Ga0307469_106810321	3300031720	Hardwood Forest Soil	RNEQTRYKTYWALVIAEQPSKKKEPKVAAERKTAERQASAGSSENPIGTIKNFVCKYLC
Ga0318576_103299582	3300031796	Soil	HNANLLQSKADIVGVAVARNEQTRYKTYWAMVIAEKPSKKKEPKVTAERKTAERQESVGSSENPISTIKNFVCKYLC
Ga0318511_104165542	3300031845	Soil	RYKTFWAMVIAEKSPKGKDRKVADGASIQRSQGSQTFEDPISAVKNFVCKYLC
Ga0306919_101985723	3300031879	Soil	NEQTRYKTYWAMVIAEKPSKKKEPKVTAERKTAERQESVGSSENPISTIKNFVCKYLC
Ga0306919_103479843	3300031879	Soil	VAYNEQTRYKTYWAMVIAEKPSKKEPKVTAVRETAERRDSAGSFGNPIGTIKNFVCQYLC
Ga0306925_111022611	3300031890	Soil	HNANLLQSKADIVGVAVAYNEQTRYKTYWAMVIAEKPSKKEPKVAAVRETAERRDSAGSFGNPIGTIKNFVCQYLC
Ga0306925_120220982	3300031890	Soil	RYKTFWAMVIAEKPPKVKDRKVADGGSVERTQSSQTLEDPISAVKNFVCKYLC
Ga0306923_121154212	3300031910	Soil	KPSKAMVVAEKPSKKEPKVVAVRETAERRDSAGNSGNPINAIKNFICKYLC
Ga0306921_102387593	3300031912	Soil	NLLQSKADIVGVAVARNEQTRYKTYWAMVIAEKPSKKKEPKVTAERKTAERQESVGSSENPISTIKNFVCKYLC
Ga0306921_126221471	3300031912	Soil	QSNADSVGVAVARNDQTRYKTFWAMVIAEKLPEKNTREAAGKSKAPARHASVEVSESPISAIKNFVCKYVC
Ga0310916_103326261	3300031942	Soil	MVIAEKPSKKKEPKVTAERKTAERQESVGSSENPISTIKNFVCKYLC
Ga0310909_102207934	3300031947	Soil	HNANLLQSKADIVGVAVAYNEQTRYKTYWAMVIAEKPSKKEPKVAAGRETAERRDSAGSSGNPISTIKNFVCKYLC
Ga0306922_108890621	3300032001	Soil	GHNANLLQSNADSVGVAVARNDQTRYKTFWAMVIAEKTPEKKTREAAGKSKAPERHASVEASENPISAIKNFVCKYVC

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F101628

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences