Metagenome Family F101604

Basic Information
Family ID	F101604
Family Type	Metagenome
Number of Sequences	102
Average Sequence Length	71 residues
Representative Sequence	VVEGNIFNAWEPHGAARYWGGWMANPGVGLEVLVKDSKGNTVGEIRHKAKGSTIRDAVENGLEEVAKAINAGR
Number of Associated Samples	90
Number of Associated Scaffolds	102

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	0.98 %
% of genes from short scaffolds (< 2000 bps)	0.98 %
Associated GOLD sequencing projects	87
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.62

Most Common Taxonomy
Group	Unclassified (99.020 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil (9.804 % of family members)
Environment Ontology (ENVO)	Unclassified (34.314 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (43.137 % of family members)

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 21.78% β-sheet: 25.74% Coil/Unstructured: 52.48%
Feature Viewer

Powered by Feature Viewer

Pfam ID	Name	% Frequency in 102 Family Scaffolds
PF02562	PhoH	17.65
PF07617	DUF1579	1.96
PF03279	Lip_A_acyltrans	1.96
PF00330	Aconitase	1.96
PF07698	7TM-7TMR_HD	0.98
PF01218	Coprogen_oxidas	0.98
PF01180	DHO_dh	0.98
PF00753	Lactamase_B	0.98
PF08242	Methyltransf_12	0.98
PF00180	Iso_dh	0.98
PF02130	YbeY	0.98
PF07650	KH_2	0.98
PF08245	Mur_ligase_M	0.98

COG ID	Name	Functional Category	% Frequency in 102 Family Scaffolds
COG1702	Phosphate starvation-inducible protein PhoH, predicted ATPase	Signal transduction mechanisms [T]	17.65
COG1875	Predicted ribonuclease YlaK, contains NYN-type RNase and PhoH-family ATPase domains	General function prediction only [R]	17.65
COG1560	Palmitoleoyl-ACP: Kdo2-lipid-IV acyltransferase (lipid A biosynthesis)	Lipid transport and metabolism [I]	1.96
COG4261	Predicted acyltransferase, LPLAT superfamily	General function prediction only [R]	1.96
COG0042	tRNA-dihydrouridine synthase	Translation, ribosomal structure and biogenesis [J]	0.98
COG0069	Glutamate synthase domain 2	Amino acid transport and metabolism [E]	0.98
COG0167	Dihydroorotate dehydrogenase	Nucleotide transport and metabolism [F]	0.98
COG0319	ssRNA-specific RNase YbeY, 16S rRNA maturation enzyme	Translation, ribosomal structure and biogenesis [J]	0.98
COG0408	Coproporphyrinogen-III oxidase HemH, oxygen-dependent	Coenzyme transport and metabolism [H]	0.98
COG1304	FMN-dependent dehydrogenase, includes L-lactate dehydrogenase and type II isopentenyl diphosphate isomerase	Energy production and conversion [C]	0.98
COG1480	Cyclic di-AMP-specific phosphodiesterase PgpH, HD superfamily	Signal transduction mechanisms [T]	0.98
COG2070	NAD(P)H-dependent flavin oxidoreductase YrpB, nitropropane dioxygenase family	General function prediction only [R]	0.98

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	99.02 %
All Organisms	root	All Organisms	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	99.02 %
cellular organisms	root	All Organisms → cellular organisms	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	99.02 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	99.02 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	99.02 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	99.02 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.98 %

Scaffold	Taxonomy	Length	IMG/M Link
3300012204\|Ga0137374_11172884	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	540	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	73.53%
Host-Associated	Host-Associated	26.47%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	63.73%
Plants	Host-Associated → Plants	26.47%
Aquatic	Environmental → Aquatic	9.80%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	62.75%
Rhizosphere	Host-Associated → Plants → Rhizosphere	13.73%
Rhizoplane	Host-Associated → Plants → Rhizoplane	11.76%
Freshwater	Environmental → Aquatic → Freshwater	6.86%
Sediment	Environmental → Aquatic → Sediment	2.94%
Floodplain	Environmental → Terrestrial → Floodplain	0.98%
Roots	Host-Associated → Plants → Roots	0.98%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	39.22%
Loam	Environmental → Terrestrial → Soil → Loam	10.78%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	9.80%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	7.84%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	6.86%
Soil	Host-Associated → Plants → Rhizosphere → Soil	5.88%
Lake	Environmental → Aquatic → Freshwater → Lake	2.94%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	2.94%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	2.94%
Sand	Environmental → Terrestrial → Soil → Sand	2.94%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	2.94%
Soil	Host-Associated → Plants → Rhizoplane → Soil	1.96%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.98%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	0.98%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.98%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	24.51%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	7.84%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	7.84%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	6.86%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	5.88%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	5.88%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	5.88%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	4.90%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	3.92%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	2.94%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	2.94%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	2.94%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	2.94%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	1.96%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	1.96%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	1.96%
Unclassified	Environmental → Terrestrial → Soil → Loam → Unclassified	1.96%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	1.96%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.98%
Unclassified	Environmental → Aquatic → Freshwater → Lake → Unclassified	0.98%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	0.98%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	0.98%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.98%

Habitat	Taxonomy	Distribution
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	9.80%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	6.86%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	6.86%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	4.90%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	4.90%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	3.92%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	3.92%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	2.94%
Groundwater Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand	2.94%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	2.94%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	2.94%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	1.96%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	1.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.96%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.96%
Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Soil	1.96%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	1.96%
Soil	Environmental → Terrestrial → Soil → Loam → Unclassified → Soil	1.96%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	1.96%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.96%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	1.96%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	0.98%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	0.98%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	0.98%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Freshwater Sediment	0.98%
Freshwater Wetlands	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands	0.98%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	0.98%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	0.98%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost	0.98%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.98%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Corn, Switchgrass And Miscanthus Rhizosphere	0.98%
Natural And Restored Wetlands	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands	0.98%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.98%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.98%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	0.98%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.98%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.98%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.98%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	0.98%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.98%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.98%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.98%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.98%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001976	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S7	Host-Associated	Open in IMG/M
3300002121	Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 10_1	Environmental	Open in IMG/M
3300004268	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 MoBio	Environmental	Open in IMG/M
3300005328	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG	Host-Associated	Open in IMG/M
3300005338	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2	Host-Associated	Open in IMG/M
3300005343	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG	Environmental	Open in IMG/M
3300005347	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG	Host-Associated	Open in IMG/M
3300005366	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG	Host-Associated	Open in IMG/M
3300005456	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG	Host-Associated	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005547	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG	Environmental	Open in IMG/M
3300005569	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_154	Environmental	Open in IMG/M
3300005617	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2	Host-Associated	Open in IMG/M
3300006055	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-1 deep-072012	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006864	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Permafrost soil replicate 3 DNA2013-193	Environmental	Open in IMG/M
3300006880	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3	Host-Associated	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009081	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 19-21cm May2015	Environmental	Open in IMG/M
3300009089	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG	Environmental	Open in IMG/M
3300009093	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG	Host-Associated	Open in IMG/M
3300009502	Freshwater microbial communities from Finland to study Microbial Dark Matter (Phase II) - AM7a DNA metaG	Environmental	Open in IMG/M
3300009551	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG	Host-Associated	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300009800	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N2_30_40	Environmental	Open in IMG/M
3300009803	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S3_40_50	Environmental	Open in IMG/M
3300009822	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S1_30_40	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300010391	Freshwater sediment microbial communities from Lake Superior, USA - Station SU-17. Combined Assembly of Gp0155404, Gp0155335, Gp0155336, Gp0155336, Gp0155403, Gp0155406	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300011271	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaG	Environmental	Open in IMG/M
3300012204	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_100_16 metaG	Environmental	Open in IMG/M
3300012206	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaG	Environmental	Open in IMG/M
3300012349	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Sage2_R_115_16 metaG	Environmental	Open in IMG/M
3300012484	Unplanted soil (control) microbial communities from North Carolina - M.Soil.2.old.190510	Environmental	Open in IMG/M
3300012904	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S029-104C-1	Environmental	Open in IMG/M
3300012912	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S163-409C-2	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012931	Freshwater wetland microbial communities from Ohio, USA - Open water 3 Core 3 Depth 3 metaG	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300013100	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG	Host-Associated	Open in IMG/M
3300014056	Permafrost microbial communities from Nunavut, Canada - A20_5cm_0M	Environmental	Open in IMG/M
3300014154	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09212015	Environmental	Open in IMG/M
3300014324	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_TuleA_D1	Environmental	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300014882	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT231B'_16_10D	Environmental	Open in IMG/M
3300014969	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG	Host-Associated	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300017930	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_5	Environmental	Open in IMG/M
3300017961	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_20_MG	Environmental	Open in IMG/M
3300017966	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP12_20_MG	Environmental	Open in IMG/M
3300018058	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_20_MG	Environmental	Open in IMG/M
3300018076	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60_coex	Environmental	Open in IMG/M
3300018084	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_32_b1	Environmental	Open in IMG/M
3300020004	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H1a2	Environmental	Open in IMG/M
3300021445	Bulk soil microbial communities from the field in Mead, Nebraska, USA - 072115-187_1 MetaG	Environmental	Open in IMG/M
3300025325	Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 13_2 (SPAdes)	Environmental	Open in IMG/M
3300025482	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210 shallow-092012 (SPAdes)	Environmental	Open in IMG/M
3300025579	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-2 deep-072012 (SPAdes)	Environmental	Open in IMG/M
3300025878	Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostAB12-D (SPAdes)	Environmental	Open in IMG/M
3300025923	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025930	Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)	Environmental	Open in IMG/M
3300025934	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025945	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026067	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026121	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026223	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Permafrost soil replicate 2 DNA2013-190 (SPAdes)	Environmental	Open in IMG/M
3300026548	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155 (SPAdes)	Environmental	Open in IMG/M
3300027654	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 MoBio (SPAdes)	Environmental	Open in IMG/M
3300028047	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300031549	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f24	Environmental	Open in IMG/M
3300031679	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f23	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300032342	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G10_0	Environmental	Open in IMG/M
3300032782	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.1	Environmental	Open in IMG/M
3300032828	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.4	Environmental	Open in IMG/M
3300033419	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_soil_day5_noCT	Environmental	Open in IMG/M
3300033557	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M1_C1_D2_B	Environmental	Open in IMG/M
3300034354	Sediment microbial communities from East River floodplain, Colorado, United States - 23_s17	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI24752J21851_10430381	3300001976	Corn, Switchgrass And Miscanthus Rhizosphere	NVFNAWEPSGAARYWGGWAANPGVGLELICKSGGKVVGELRHKAKGSTVRDAVENGLEDMAKAVAKGK*
C687J26615_101818522	3300002121	Soil	AGYKLAEKGAELVIEGNVFNAWEPGTGARIWGGWMANPGVGLEVIVKDSSGKVVGEIRHKSRGSTVEDAVENALEEVAQAISDGR*
Ga0066398_102160952	3300004268	Tropical Forest Soil	NVFNAWEPHGAARYWGGWAANPGVGMEIVAKDPKGTVLAEIRHKSKGSTIRDAVENGLEDVAKSLAAGK*
Ga0070676_111582942	3300005328	Miscanthus Rhizosphere	FKLADKGAELTVEGNVFNAWEPGTGARIWGGWMANPGVGLEVILKDSSGKIVGEIRHKNRGSTISDAVENALEEVSKAIQDGR*
Ga0068868_1018104731	3300005338	Miscanthus Rhizosphere	VEGNVFNAWEPGTGARIWGGWMANPGVGLEVILKDSSGKIVGEIRHKNRGSTISDAVENALEEVSKAIQDGR*
Ga0070687_1001627701	3300005343	Switchgrass Rhizosphere	GAELTFEGNVFDAWEPSGAGRFWGGWMANPGCGLEVMAKDSSGKVVAEIRHKARGSTVKDAVENGLENIVKDIAKVK*
Ga0070668_1020941731	3300005347	Switchgrass Rhizosphere	WLEKAGFKLADKGAELTVEGNVFNAWEPGTGARIWGGWMANPGVGLEVILKDSSGKIVGEIRHKNRGSTISDAVENALEEVSKAIQDGR*
Ga0070659_1010222232	3300005366	Corn Rhizosphere	AARYWGGWAANPGVGLELVCKAGGKVVGELRHKAKGSTVRDAVENGLEDMSKSLAKGK*
Ga0070678_1015217102	3300005456	Miscanthus Rhizosphere	AWEPHGAARYWGGWAANPGVGLELLIKANGKVVGEMRHKSKGSTIRDAVENGLEDMAKDIGRSK*
Ga0070706_1014490841	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	IVKSGGDIVVDGNIFNAWEPRGAARYWGGWAANPGVGLEVIVKAGPKVVGEVRHKAKGSTMRDAVENGLEDVAKAISKGK*
Ga0070706_1017841561	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	DKGAELTVEGNVFNAWQPGTGARIWGGWMANPGVGVEVLLKDSSGKIVGEIRHKNRGSSIEDAVENALEEISKAIGDGR*
Ga0070707_1018010021	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	KGAELTVEGNVFNAWQPGTGARIWGGWMANPGVGVEVLLKDSSGKIVGEIRHKNRGSSIEDAVENALEEVSKAIGDGR*
Ga0070693_1003579152	3300005547	Corn, Switchgrass And Miscanthus Rhizosphere	GGWAANPGVGLEVIAKDAKGNIVGEIRHKAKGSTIRDAVENGLEDVAKAMVKGD*
Ga0066705_105074802	3300005569	Soil	VEGNVFNAWEPRGAARYWGGWAAHPGVGLEVMVKDSKGNIVAEVRHKAKGSTIRDAVENGLEEVAKALSKGE*
Ga0068859_1017338302	3300005617	Switchgrass Rhizosphere	IEGNICNAWEPNGGARFFGGWMANPGSIIELIGRDKSGKIVFEIRHKARGSTVEDSVENGIEKIIETLEAWK*
Ga0097691_10250011	3300006055	Arctic Peat Soil	VRDGGDLRIEGNVFNAWEPSGAARAWGGWAANPGVGMELVAKDKSGKTIFEIRHKAKGSTLEDAVENGLEKIVKTLEVGK*
Ga0070712_1017159081	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	GGDLVVEGNVFNAWEPHGGARYWGGWMANPGVGLEVLVKANGQVVGEVRHKSKGSTVRDAVENCLEDVAKAISAGR*
Ga0066797_11356212	3300006864	Soil	LVIEGNVFNAWEPRGAGRYWGGWMANPGVGLEIVAKDAKGNIVGEVRHKAKGSTIRDAVENGLEEVAKALANGN*
Ga0075429_1010465512	3300006880	Populus Rhizosphere	IEGNVFNAWEPGTGARIWGGWMANPGVGLEVLAKDGSGKVVGEIRHKSRGSTIEDAVENALEEVAQAISGGR*
Ga0066710_1007691682	3300009012	Grasslands Soil	FNVVEKDGELTVEGNVFNAWEPSGGARFWGGWMANPGAGTEVIAKESSGKIVAEIRHKSRGSTIKDAVENGLESVAEAMAKGK
Ga0105098_103488922	3300009081	Freshwater Sediment	EKGADIVVEGNVFNAWEPTGAARYWGGWAANPGVGLELLIKDKSGEIVGELRQKAKGSTIPDAVENGLEDMCKSIAAGK*
Ga0099828_111653642	3300009089	Vadose Zone Soil	YKVVKSGGELTVEGNVFNAWEPHGAGRYWGGWMANPGVGLEVAVKDSKGGTVAEIRHKAKGSTIRDAVENGLEEIAKAFNGGK*
Ga0105240_118288882	3300009093	Corn Rhizosphere	GARIWGGWMANPGVGLEVILKDSSGKIVGEIRHKNRGSTISDAVENALEEVSKAIQDGR*
Ga0114951_101956071	3300009502	Freshwater	LTIEGNIADAWEPSGAARAWGGWMANPGVCQEIIGKDSKGKTVFEIRHKSKGSTLSDAVENGVENICKSIAKGK*
Ga0105238_128218392	3300009551	Corn Rhizosphere	ANPGVGLELLIKANGKVVGEMRHKSKGSTIRDAVENGLEDMAKDIGRSK*
Ga0126374_102690492	3300009792	Tropical Forest Soil	FKVVKSGGDYAIEGNIFNAWEPHGAARYWGGWAANPGVGMEVVVKDAKGTTVAEIRHKAKGTTVRDAVENGLEDVAKSLAAGK*
Ga0105069_10328042	3300009800	Groundwater Sand	GELTIQGNVFNAWEPTGAARYWGGWAANPGVGLELLLKANGKVVGEMRTKAKGSTIRDAVENGLEDMTNALSKGR*
Ga0105065_10391802	3300009803	Groundwater Sand	FWGGWYANPGVCLEVLAKDSKGNIVAEIRHKAKGSTVRDAVENGLEDVAEALAKGR*
Ga0105066_10534892	3300009822	Groundwater Sand	VVTIAGNVCNAWEPEGAARFWGGWYANPGVCVEVIAKDAKGTIVAEIRHKAKGSTMRDAVENGLETVAKAIAAGK*
Ga0126380_119439112	3300010043	Tropical Forest Soil	GAARYWGGWAANPGVGMELVCKAGGKVVGELRHKAKGSTPRDAVENGLEDMIKAVAKGK*
Ga0126384_108398082	3300010046	Tropical Forest Soil	GAARYWGGWAANPGVGQEVIVKDSKGKIVAEVRHKSKGSTMRDAVENGLEDVAKAFSSGR
Ga0126384_114488711	3300010046	Tropical Forest Soil	HGAARYWGGWAANPGVGVEIVAKDPKGTVLAEIRHKSKGSTIRDAVENGLEDVAKSLAAGK*
Ga0126384_116418272	3300010046	Tropical Forest Soil	GNIFNAWEPHGAGRYWGGWMANPGVGLEVMVKDSKGNVVGEIRHKAKGSTIRDAVENGLEEVAKAISAGR*
Ga0126384_121585012	3300010046	Tropical Forest Soil	VVEGNIFNAWEPHGAARYWGGWMANPGVGLEVLVKDSKGNTVGEIRHKAKGSTIRDAVENGLEEVAKAINAGR*
Ga0126370_115045292	3300010358	Tropical Forest Soil	PHGAARYWGGWMANPGVGVEVLLKDAHGKVLGEIRHKSKGSTVRDAVENALEDVTKEIVKAK*
Ga0126372_120164631	3300010360	Tropical Forest Soil	IDGNVFNAWEPHGAGRFWGGWMANPGVGLEVVIKDSKGELVGEVRHKAKGSTIRDAIENGLEEVAKAVADGR*
Ga0105239_113263442	3300010375	Corn Rhizosphere	GWAANPGVGLELVCKAGGKVVGELRHKAKGSTVRDAVENGLEDMSKSLAKGK*
Ga0136847_107051162	3300010391	Freshwater Sediment	GAARYWGGWAASPGVGLEVMAKDAKGNILAEIRQKAKGSTPRDAVENGLEDIATSLAKGR
Ga0126383_128216992	3300010398	Tropical Forest Soil	WAASPGVGLEVTVKDGKGATVGEVRHKAKGSTIRDGVENGLEEVAKALADGR*
Ga0137393_110060351	3300011271	Vadose Zone Soil	KVVKSGGELTVEGNVFNAWEPHGAGRYWGGWMANPGVGLEVVVKDSKGGTVAEIRHKAKGSTIRDAVENGLEEIAKAFNGGK*
Ga0137374_111728841	3300012204	Vadose Zone Soil	KQGFKVVKSGGEVTIEGNIFNAWEPHGAARYWGGWAANPGVGVEVVAKDAKGNILAEIRHKAKGSTIRDAVENGLEDVAKALEAGK*
Ga0137380_109349072	3300012206	Vadose Zone Soil	GKEYMEQWLEKAGYKVSDKGAELTVEGNVFNAWQPGTGARIWGGWMANPGVGVEVLLKDSSGKIVGEVRHKNRGSSIEDAVENALEEVSKAIGDGR*
Ga0137387_107772381	3300012349	Vadose Zone Soil	AGKEYMEQWLEKAGYKISDKGAGLTVEGNIFNAWQPGTGARIWGGWMANPGVGVEVLLKDSSGKIVGEVRHKNRGSSIEDAVENALEEVSKAIGDGR*
Ga0137387_110958191	3300012349	Vadose Zone Soil	VEGNIFNAWEPHGAGRYWGGWMANPGVGLEVVVKDSKGGTVAEIRHKAKGSTIRDAVENGLEEIAKAFSGGK*
Ga0157333_10145971	3300012484	Soil	KSGGDMTVSGNVFNAWEPHGAARYWGGWAANPGVGLELLIKANGKVVGEMRHKAKGSTIRDAVENGLEDMSKSLAKGK*
Ga0157282_100731542	3300012904	Soil	RYWGGWAANPGVGLELVCKAGGKVVGELRHKAKGSTVRDAVENGLEDMSKSLAKGK*
Ga0157306_102752991	3300012912	Soil	PGVGLELVCKAGGKVVGELRHKAKGSTVRDAVENGLEDMSKSLAKGK*
Ga0137407_121867561	3300012930	Vadose Zone Soil	VEGNVFNAWQPGTGARIWGGWMANPGVGVEVLLKDSSGKIVGEVRHKNRGSSIEDAVENALEEVSKAIGDGR*
Ga0153915_116361722	3300012931	Freshwater Wetlands	VEGNVFNAWEPHGAARYWGGWMANPGVGLEVLIKDSKGAVVGEIRHKSKVSTIRDAVENALEDVAKACNAGK*
Ga0164303_108074082	3300012957	Soil	MANPGVGVEVLIKDWKGNVVGETRHKSKGSTVRDAVENALEDVARAINAGK*
Ga0126369_125811691	3300012971	Tropical Forest Soil	HGAARYWGGWAANPGVGLEIIAKDSGGKVVAEMRHKSKGSTPRDAVENGLEDITKSLVKGR*
Ga0157373_111942362	3300013100	Corn Rhizosphere	GTGARIWGGWMANPGVGLEVLLKDSSGKVLGEIRHKNRGSTIPDAVENALEEVAKAIEDGR*
Ga0120125_10381442	3300014056	Permafrost	GWAANPGVGLEVVLKAGGKVVGEIRHKAKGSTMRDAVENGLEDVGKSIAKGK*
Ga0134075_102685601	3300014154	Grasslands Soil	EKAGYKVSDKGAELTVEGNVFNAWQPGTGARIWGGWMANPGVGVEVLLKDSSGKIVGEIRHKNRGSSIEDAVENALEEVSKAIGDGR*
Ga0075352_11721162	3300014324	Natural And Restored Wetlands	GGELQVEGNVFNAWEPSGAARAWGGWAANPGVGLELILKANGKVVGEVRQKAKGSTLRDAVENGLEDCAKSIAKGH*
Ga0163163_106483701	3300014325	Switchgrass Rhizosphere	SGGDLQIEGNIFNAWEPSGAARYWGGWAANPGVGLELVCKAGGKVVGELRHKAKGSTVRDAVENGLEDMSKSIAKGR*
Ga0180069_10535932	3300014882	Soil	VKDGGDLRIEGNVFNAWEPSGAARAWGGWAANPGVGMELVAKDKSGKTIFEIRHKAKGSTMEDAVENGLENIVKTLEVGK*
Ga0157376_104282591	3300014969	Miscanthus Rhizosphere	PSGAARYWGGWAANPGVGLELTCKAGGKVVGELRHKAKGSTVRDAVENGLEDMAKSIEKGK*
Ga0132258_102715391	3300015371	Arabidopsis Rhizosphere	GEVSIEGNVCNAWEPRGAGRYWGGWYSNPGVCLELIAKDAKGNVVAEMRHKAKGSSMRDAVENGLEDMVKSLAKGR*
Ga0132257_1000236671	3300015373	Arabidopsis Rhizosphere	KGGFKLADKGAELVVEGNVFNAWEPGTGARIWGGWMANPGVGLEVILKDSSGKIVGEIRHKNRGSTISDAVENALEEVSKAIQDGR*
Ga0132257_1018556832	3300015373	Arabidopsis Rhizosphere	EGNVCNAWEPRGAGRYWGGWYSNPGVCLELIAKDAKGNVVAEMRHKAKGSSMRDAVENGLEDMVKSLAKGR*
Ga0132255_1006044231	3300015374	Arabidopsis Rhizosphere	GNVCNAWEPRGAGRYWGGWYSNPGVCLELIAKDAKGNVVAEMRHKAKGSSMRDAVENGLEDMVKSLAKGR*
Ga0132255_1058043512	3300015374	Arabidopsis Rhizosphere	YWGGWMANPGVGLEVLVKANGQVVGEVRHKSKGSTVRDAVENALEDVAKAISAGR*
Ga0132255_1058669632	3300015374	Arabidopsis Rhizosphere	AANPGVGLELIAKDAKGNIVAEMRHKAKGSTPRDAVENGLEDMVKTLAKGK*
Ga0132255_1060705931	3300015374	Arabidopsis Rhizosphere	ADKGAELVVEGNVFNAWEPGTGARIWGGWMANPGVGLEVILKDSSGKIVGEIRHKNRGSTIPDAVENALEEVSKAIQDGR*
Ga0187825_101605662	3300017930	Freshwater Sediment	GGWMANPGVGLEVLVKDSHGKVMAEIRHKAKGSTIRDAVENGLEDVAKEIVKGK
Ga0187825_103728901	3300017930	Freshwater Sediment	YDVVEKGPADYTVEGNIFNAWEPSGAARVWGGWGANPGVGMELIIKDKSGAIVAEIREKAKGSTIHDAVENGLEDCAKDIAKGK
Ga0187778_102236062	3300017961	Tropical Peatland	GNVFNAWEPHGAARYWGGWAANPGVGVEVMCKAGGKVVAEIRHKSKGSTPHDAVENALEDVAKAMSKGK
Ga0187776_102073902	3300017966	Tropical Peatland	GGARYWGGWAANPGVCLEVIAKDSKGTILAEVRQKSKGSTLRDAVENGLEDVAKSLTKGH
Ga0187766_111025642	3300018058	Tropical Peatland	GELTVEGNVFNAWEPHGAARYWGGWAANPGVGMELILKAGGKVVGELRHKAKGSTPHDAVENGLEDMMKSVAKGK
Ga0184609_100529331	3300018076	Groundwater Sediment	FKLADKGAELTVEGNVFNAWEPGTGARIWGGWMANPGVGLEVLLKDSSGKVVGEIRHKNRGSSLGDAVENATEEVAKAIEDGR
Ga0184629_105036071	3300018084	Groundwater Sediment	GAARYWGGWAANPGVGLEVVARDAKGNIVGEVRHKAKGSTIRDAVENGLEEVAKALANGN
Ga0193755_12220261	3300020004	Soil	PHGAARYWGGWAANPGVGLEVVAMDAKGNIVAEVRHKAKGSTIRDAVENGLEEVAKALANGN
Ga0182009_100320983	3300021445	Soil	AANPGVGLELVCKAGGKVVGELRHKAKGSTVRDAVENGLEDMSKSISKGR
Ga0182009_105950291	3300021445	Soil	VKSGADIVVEGNIFNAWEPHGGARYWGGWMANPGVGVEVLVKDSKGNVVGEIRHKSKGSTVRDAVENALEDVAKAINAGK
Ga0209341_112961061	3300025325	Soil	AGREYMEQWLERAGYELKEKGAELTIEGNIFNAWEPGTGARVWGGWMANPGVGVEVTAKDGSGKIVAEVRHKARGSTIEDAVENALEEVAEALTAGR
Ga0208715_10101204	3300025482	Arctic Peat Soil	DGGDLRIEGNVFNAWEPSGGARVWGGWAANPGVGMELVAKDKSGKTIFEIRHKAKGSTLEDAVENGLEKIVKTLEVGK
Ga0207927_10562151	3300025579	Arctic Peat Soil	AWEPSGAARAWGGWMANPGVCQEVIGKDSKGKTVFEIRHKSKGSSLSDAVENGIENICKTISKGK
Ga0209584_103031121	3300025878	Arctic Peat Soil	FNAWEPSGAARVWGGWAANPGVGMELVAKDKSGKTVFEIRHKAKGSTMEDAVENGLENIVKTLEAGK
Ga0207681_113173762	3300025923	Switchgrass Rhizosphere	ELVVEGNVFNAWEPGTGARIWGGWMANPGVGLEVILKDSSGKIVGEIRHKNRGSTIPDAVENALEEVSKAIQDGR
Ga0207701_114353982	3300025930	Corn, Switchgrass And Miscanthus Rhizosphere	AELVVEGNVFNAWEPGTGARIWGGWMANPGVGLEVILKDSSGKIVGEIRHKNRGSTIPDAVENALEEVSKAIQDGR
Ga0207686_112090581	3300025934	Miscanthus Rhizosphere	VVKSGGDMTVSGNVFNAWEPHGAARYWGGWAANPGVGLELLIKANGKVVGEMRHKSKGSTIRDAVENGLEDMAKDIGRSK
Ga0207686_112289541	3300025934	Miscanthus Rhizosphere	DKGAELTVEGNVFNAWEPGTGARIWGGWMANPGVGLEVLLKDSSGKVLGEIRHKNRGSTIPDAVENALEEVAKAIEDGR
Ga0207679_107760552	3300025945	Corn Rhizosphere	AARYWGGWAANPGVGLELVCKAGGKVVGELRHKAKGSTVRDAVENGLEDMSKSIAKGR
Ga0207678_101696093	3300026067	Corn Rhizosphere	QVEGNVFNAWEPSGAARYWGGWAANPGVGLELICKSGGKVVGELRHKAKGSTVRDAVENGLEDMAKAVAKGK
Ga0207683_110377371	3300026121	Miscanthus Rhizosphere	KSGGDMTVSGNVFNAWEPHGAARYWGGWAANPGVGLELLIKANGKVVGEMRHKSKGSTIRDAVENGLEDMAKDIGRSK
Ga0209840_11366441	3300026223	Soil	NVFNAWEPSGGARVWGGWAANPGVGMELVAKDKSGKTVFEIRHKAKGSTLEDAVENGLENIVKTLEVGK
Ga0209161_100624242	3300026548	Soil	MEQWLEKAGYKVSDKGAELTVEGNVFNAWQPGTGARIWGGWMANPGVGVEVILRDSSGKIVGEVRHKNRGSSIEDAVENALEEVSKAIQDGR
Ga0209799_11107082	3300027654	Tropical Forest Soil	IEGNVFNAWEPHGAARYWGGWAANPGVGMEIVAKDPKGTVLAEIRHKSKGSTIRDAVENGLEDVAKSLAAGK
Ga0209526_107982742	3300028047	Forest Soil	NAWEPRGAARYWGGWAANPGVGLEVILKANGKVVGEVRHKSKGSTIRDAVENGLEDVAKDIAKGK
Ga0318571_104571481	3300031549	Soil	GAARYWGGWAANPGVGVEVLCKAGGKVVGEIRHKSKGSTPHDAVENALEDVAKAISKGK
Ga0318561_104134291	3300031679	Soil	YWGGWAANPGVGVEVLCKAGGKVVGEIRHKSKGSTPHDAVENALEDVAKAISKGK
Ga0306922_107129991	3300032001	Soil	PADITIHGNVFNAWEPSGAARAWGGWAANPGVGLELLIKNKSGQVVGELRQKAKGSTIHDAVENGLEDCAKSIAKGR
Ga0307470_111952912	3300032174	Hardwood Forest Soil	FNAWEPHGAARYWGGWAANPGVGLEVVVMDAKGNIVAEVRHKAKGSTIRDAVENGLEEVAKALANGN
Ga0307471_1015104571	3300032180	Hardwood Forest Soil	KGGGDIVVEGNVFNAWEPHGAARYWGGWAANPGVGLEVMVKDSKGNIVGEVRHKAKGSTIRDAVENGLEEVAKALANGN
Ga0306920_1040213251	3300032261	Soil	YWGGWAANPGVGQEIIVKDSKGKIVAEVRHKSKGSTIRDAVENGLEDVAKAFSSGK
Ga0315286_113337662	3300032342	Sediment	VVKSGGDIQVEGNVFNAWEPSGAAQYWGGWAANPGVGLELLIKAKGKVVGELRQKAKGSTIRDAVENGLEDCAKSIAAGK
Ga0335082_100575391	3300032782	Soil	SGPEVTIEGNVFNAWEPSGGARYWGGWAANPGVGLEVLAKDAKGNILAEIRQKSKGSTPRDAVENALEDVAKSLEKGR
Ga0335080_107642922	3300032828	Soil	SGGDLVIEGNVFNAWEPHGAARYWGGWAANPGVGLELIGKDSSGKVVVEMRHKSKGSTPRDAVENGLEDMTKSLVKGR
Ga0316601_1015049692	3300033419	Soil	KDGGDLRIEGNVFNAWEPSGGARFWGGWAANPGVGMELVAKDKSGKTIFEIRHKAKGSTMEDAVENGLENIVKTLEVWK
Ga0316617_1018315452	3300033557	Soil	VRDGKADLTIEENVVHAWEPSGAARFWGGWYADPGVVQELVGTDASGTTVFEIRHKSKGSSLADAVENGIEKVVETLEQGK
Ga0364943_0015699_350_574	3300034354	Sediment	VRIEGNVFNAWEPSGGARMWGGWAANPGVGMELVARDKSGKTIFEIRHKAKGSTMEDAVENGLENIVKTLEAGK

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.62
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.62
Powered by PDBe Molstar

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F101604

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign