NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F101599

Metagenome / Metatranscriptome Family F101599

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F101599
Family Type Metagenome / Metatranscriptome
Number of Sequences 102
Average Sequence Length 42 residues
Representative Sequence MDQVLQIALESPLPTLHEEETAQPIAPLTSSTGDSPAAHQ
Number of Associated Samples 89
Number of Associated Scaffolds 102

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 0.98 %
% of genes near scaffold ends (potentially truncated) 98.04 %
% of genes from short scaffolds (< 2000 bps) 94.12 %
Associated GOLD sequencing projects 86
AlphaFold2 3D model prediction Yes
3D model pTM-score0.26

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (61.765 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland
(9.804 % of family members)
Environment Ontology (ENVO) Unclassified
(27.451 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(55.882 % of family members)



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Multiple Sequence Alignments

Select alignment to view:      


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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 11.76%    β-sheet: 0.00%    Coil/Unstructured: 88.24%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.26
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 102 Family Scaffolds
PF06559DCD 44.12
PF07238PilZ 18.63
PF01926MMR_HSR1 11.76
PF12704MacB_PCD 1.96
PF01053Cys_Met_Meta_PP 0.98
PF01370Epimerase 0.98
PF03167UDG 0.98

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 102 Family Scaffolds
COG0717dCTP deaminaseNucleotide transport and metabolism [F] 44.12
COG0075Archaeal aspartate aminotransferase or a related aminotransferase, includes purine catabolism protein PucGAmino acid transport and metabolism [E] 0.98
COG01567-keto-8-aminopelargonate synthetase or related enzymeCoenzyme transport and metabolism [H] 0.98
COG0399dTDP-4-amino-4,6-dideoxygalactose transaminaseCell wall/membrane/envelope biogenesis [M] 0.98
COG0436Aspartate/methionine/tyrosine aminotransferaseAmino acid transport and metabolism [E] 0.98
COG0520Selenocysteine lyase/Cysteine desulfuraseAmino acid transport and metabolism [E] 0.98
COG0626Cystathionine beta-lyase/cystathionine gamma-synthaseAmino acid transport and metabolism [E] 0.98
COG0692Uracil-DNA glycosylaseReplication, recombination and repair [L] 0.98
COG1573Uracil-DNA glycosylaseReplication, recombination and repair [L] 0.98
COG1921Seryl-tRNA(Sec) selenium transferaseTranslation, ribosomal structure and biogenesis [J] 0.98
COG1982Arginine/lysine/ornithine decarboxylaseAmino acid transport and metabolism [E] 0.98
COG2008Threonine aldolaseAmino acid transport and metabolism [E] 0.98
COG2873O-acetylhomoserine/O-acetylserine sulfhydrylase, pyridoxal phosphate-dependentAmino acid transport and metabolism [E] 0.98
COG3663G:T/U-mismatch repair DNA glycosylaseReplication, recombination and repair [L] 0.98
COG4100Cystathionine beta-lyase family protein involved in aluminum resistanceInorganic ion transport and metabolism [P] 0.98


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A61.76 %
All OrganismsrootAll Organisms38.24 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300001175|JGI12649J13570_1029595Not Available574Open in IMG/M
3300004080|Ga0062385_10602668All Organisms → cellular organisms → Bacteria695Open in IMG/M
3300004080|Ga0062385_10670508All Organisms → cellular organisms → Bacteria665Open in IMG/M
3300004135|Ga0058884_1308595All Organisms → cellular organisms → Bacteria504Open in IMG/M
3300005542|Ga0070732_10487836All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae746Open in IMG/M
3300005554|Ga0066661_10081729All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1905Open in IMG/M
3300005577|Ga0068857_101698870All Organisms → cellular organisms → Bacteria → Acidobacteria617Open in IMG/M
3300005586|Ga0066691_10142732All Organisms → cellular organisms → Bacteria1373Open in IMG/M
3300005586|Ga0066691_10337072All Organisms → cellular organisms → Bacteria892Open in IMG/M
3300005591|Ga0070761_10128082Not Available1477Open in IMG/M
3300006086|Ga0075019_10905938Not Available566Open in IMG/M
3300006162|Ga0075030_100656839All Organisms → cellular organisms → Bacteria831Open in IMG/M
3300006175|Ga0070712_101921492All Organisms → cellular organisms → Bacteria518Open in IMG/M
3300007982|Ga0102924_1153513All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae1059Open in IMG/M
3300007982|Ga0102924_1336023Not Available588Open in IMG/M
3300009088|Ga0099830_11576220Not Available547Open in IMG/M
3300009090|Ga0099827_10491560Not Available1054Open in IMG/M
3300009143|Ga0099792_10811080Not Available614Open in IMG/M
3300009523|Ga0116221_1208375Not Available847Open in IMG/M
3300009624|Ga0116105_1005199All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium2681Open in IMG/M
3300009672|Ga0116215_1125812All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1144Open in IMG/M
3300009698|Ga0116216_10451784Not Available778Open in IMG/M
3300009759|Ga0116101_1134712All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium596Open in IMG/M
3300009824|Ga0116219_10241589Not Available1027Open in IMG/M
3300010048|Ga0126373_11363675Not Available775Open in IMG/M
3300010362|Ga0126377_11144195Not Available848Open in IMG/M
3300010366|Ga0126379_12221051All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium650Open in IMG/M
3300010398|Ga0126383_10267793All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1687Open in IMG/M
3300011271|Ga0137393_11339309Not Available605Open in IMG/M
3300012096|Ga0137389_10857842All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium779Open in IMG/M
3300012362|Ga0137361_10470965Not Available1154Open in IMG/M
3300014201|Ga0181537_11158857Not Available522Open in IMG/M
3300014501|Ga0182024_12845730Not Available514Open in IMG/M
3300015374|Ga0132255_105767263Not Available524Open in IMG/M
3300016294|Ga0182041_10192440All Organisms → cellular organisms → Bacteria → Acidobacteria1617Open in IMG/M
3300016422|Ga0182039_10883242Not Available797Open in IMG/M
3300017822|Ga0187802_10296140Not Available630Open in IMG/M
3300017823|Ga0187818_10019090All Organisms → cellular organisms → Bacteria → Acidobacteria2934Open in IMG/M
3300017972|Ga0187781_10672492All Organisms → cellular organisms → Bacteria → Acidobacteria748Open in IMG/M
3300017972|Ga0187781_10887649All Organisms → cellular organisms → Bacteria649Open in IMG/M
3300017973|Ga0187780_11004988Not Available608Open in IMG/M
3300017975|Ga0187782_10028969All Organisms → cellular organisms → Bacteria → Acidobacteria4027Open in IMG/M
3300017975|Ga0187782_10136072All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae1823Open in IMG/M
3300018007|Ga0187805_10557419Not Available540Open in IMG/M
3300018034|Ga0187863_10080967All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1828Open in IMG/M
3300018042|Ga0187871_10608621All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium606Open in IMG/M
3300018085|Ga0187772_10515291Not Available844Open in IMG/M
3300018088|Ga0187771_10180809Not Available1744Open in IMG/M
3300018088|Ga0187771_11606009Not Available552Open in IMG/M
3300018088|Ga0187771_11698276Not Available536Open in IMG/M
3300018090|Ga0187770_11276446All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → unclassified Terriglobales → Terriglobales bacterium595Open in IMG/M
3300019270|Ga0181512_1058746Not Available591Open in IMG/M
3300020583|Ga0210401_10833740Not Available781Open in IMG/M
3300021402|Ga0210385_10185174Not Available1508Open in IMG/M
3300021402|Ga0210385_11120641Not Available604Open in IMG/M
3300021420|Ga0210394_11510862Not Available568Open in IMG/M
3300021478|Ga0210402_10738245Not Available909Open in IMG/M
3300021559|Ga0210409_11331941Not Available594Open in IMG/M
3300021560|Ga0126371_10694805All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1165Open in IMG/M
3300021560|Ga0126371_10695428All Organisms → cellular organisms → Bacteria → Acidobacteria1165Open in IMG/M
3300021861|Ga0213853_10156595Not Available731Open in IMG/M
3300022525|Ga0242656_1139070Not Available505Open in IMG/M
3300024225|Ga0224572_1042573Not Available854Open in IMG/M
3300024347|Ga0179591_1139676All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae3022Open in IMG/M
3300025463|Ga0208193_1014057All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium2351Open in IMG/M
3300025612|Ga0208691_1064472Not Available828Open in IMG/M
3300025945|Ga0207679_10864845All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium826Open in IMG/M
3300026514|Ga0257168_1022785Not Available1305Open in IMG/M
3300026557|Ga0179587_10823860Not Available612Open in IMG/M
3300027080|Ga0208237_1060694Not Available559Open in IMG/M
3300027497|Ga0208199_1023935Not Available1356Open in IMG/M
3300027625|Ga0208044_1142298Not Available670Open in IMG/M
3300027853|Ga0209274_10285017Not Available848Open in IMG/M
3300027854|Ga0209517_10493045Not Available669Open in IMG/M
3300027889|Ga0209380_10280798Not Available978Open in IMG/M
3300027915|Ga0209069_10256424All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium912Open in IMG/M
3300028536|Ga0137415_11391513Not Available523Open in IMG/M
3300028731|Ga0302301_1081089Not Available847Open in IMG/M
3300028776|Ga0302303_10100975Not Available1057Open in IMG/M
3300028800|Ga0265338_11059710Not Available547Open in IMG/M
3300028871|Ga0302230_10057340Not Available1630Open in IMG/M
3300029882|Ga0311368_10952179Not Available571Open in IMG/M
3300029915|Ga0311358_10377952Not Available1157Open in IMG/M
3300029943|Ga0311340_10783558All Organisms → cellular organisms → Bacteria806Open in IMG/M
3300029993|Ga0302304_10222450All Organisms → cellular organisms → Bacteria698Open in IMG/M
3300030007|Ga0311338_11033624Not Available794Open in IMG/M
3300030740|Ga0265460_11969672All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium606Open in IMG/M
3300031234|Ga0302325_11517685Not Available861Open in IMG/M
3300031234|Ga0302325_11861988Not Available750Open in IMG/M
3300031261|Ga0302140_11059697Not Available553Open in IMG/M
3300031573|Ga0310915_11035699All Organisms → cellular organisms → Bacteria → Acidobacteria572Open in IMG/M
3300031708|Ga0310686_101377752Not Available569Open in IMG/M
3300031708|Ga0310686_107135701Not Available567Open in IMG/M
3300031708|Ga0310686_109504508All Organisms → cellular organisms → Bacteria → Acidobacteria2703Open in IMG/M
3300031954|Ga0306926_10469271All Organisms → cellular organisms → Bacteria → Acidobacteria1549Open in IMG/M
3300032160|Ga0311301_11602874Not Available792Open in IMG/M
3300032174|Ga0307470_10076373All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1830Open in IMG/M
3300032174|Ga0307470_10090611Not Available1719Open in IMG/M
3300032897|Ga0335071_10879540Not Available844Open in IMG/M
3300032954|Ga0335083_11347543Not Available547Open in IMG/M
3300034163|Ga0370515_0468989Not Available531Open in IMG/M
3300034199|Ga0370514_079748Not Available831Open in IMG/M



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil9.80%
Tropical PeatlandEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland9.80%
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil8.82%
PalsaEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa8.82%
Peatlands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil7.84%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil5.88%
PeatlandEnvironmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland3.92%
PeatlandEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Peatland2.94%
Freshwater SedimentEnvironmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment2.94%
WatershedsEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds2.94%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil2.94%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil2.94%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil2.94%
Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil2.94%
SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Soil2.94%
Bog Forest SoilEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil1.96%
Iron-Sulfur Acid SpringEnvironmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring1.96%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil1.96%
SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Soil1.96%
Untreated Peat SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil1.96%
BogEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Bog1.96%
WatershedsEnvironmental → Aquatic → Freshwater → Sediment → Unclassified → Watersheds0.98%
BogEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Bog0.98%
Surface SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil0.98%
PermafrostEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost0.98%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere0.98%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere0.98%
Corn RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere0.98%
RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere0.98%
RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere0.98%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere0.98%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300001175Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_O3EnvironmentalOpen in IMG/M
3300004080Coassembly of ECP04_OM1, ECP04_OM2, ECP04_OM3EnvironmentalOpen in IMG/M
3300004135Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF204 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300005542Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1EnvironmentalOpen in IMG/M
3300005554Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110EnvironmentalOpen in IMG/M
3300005577Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2Host-AssociatedOpen in IMG/M
3300005586Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_140EnvironmentalOpen in IMG/M
3300005591Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1EnvironmentalOpen in IMG/M
3300006086Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2013EnvironmentalOpen in IMG/M
3300006162Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012EnvironmentalOpen in IMG/M
3300006175Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaGEnvironmentalOpen in IMG/M
3300007982Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPM 11 metaGEnvironmentalOpen in IMG/M
3300009088Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaGEnvironmentalOpen in IMG/M
3300009090Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaGEnvironmentalOpen in IMG/M
3300009143Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2EnvironmentalOpen in IMG/M
3300009523Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_8_FC metaGEnvironmentalOpen in IMG/M
3300009624Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_6_10EnvironmentalOpen in IMG/M
3300009672Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_2_FS metaGEnvironmentalOpen in IMG/M
3300009698Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_3_AS metaGEnvironmentalOpen in IMG/M
3300009759Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_4_10EnvironmentalOpen in IMG/M
3300009824Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_6_BS metaGEnvironmentalOpen in IMG/M
3300010048Tropical forest soil microbial communities from Panama - MetaG Plot_11EnvironmentalOpen in IMG/M
3300010362Tropical forest soil microbial communities from Panama - MetaG Plot_22EnvironmentalOpen in IMG/M
3300010366Tropical forest soil microbial communities from Panama - MetaG Plot_24EnvironmentalOpen in IMG/M
3300010398Tropical forest soil microbial communities from Panama - MetaG Plot_35EnvironmentalOpen in IMG/M
3300011271Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaGEnvironmentalOpen in IMG/M
3300012096Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaGEnvironmentalOpen in IMG/M
3300012362Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaGEnvironmentalOpen in IMG/M
3300014201Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_10_metaGEnvironmentalOpen in IMG/M
3300014501Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)EnvironmentalOpen in IMG/M
3300015374Col-0 rhizosphere combined assemblyHost-AssociatedOpen in IMG/M
3300016294Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178EnvironmentalOpen in IMG/M
3300016422Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111EnvironmentalOpen in IMG/M
3300017822Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_2EnvironmentalOpen in IMG/M
3300017823Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_3EnvironmentalOpen in IMG/M
3300017972Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP02_20_MGEnvironmentalOpen in IMG/M
3300017973Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_20_MGEnvironmentalOpen in IMG/M
3300017975Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP15_20_MGEnvironmentalOpen in IMG/M
3300018007Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_5EnvironmentalOpen in IMG/M
3300018034Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_11_10EnvironmentalOpen in IMG/M
3300018042Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_10EnvironmentalOpen in IMG/M
3300018085Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_20_MGEnvironmentalOpen in IMG/M
3300018088Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_10_MGEnvironmentalOpen in IMG/M
3300018090Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_20_MGEnvironmentalOpen in IMG/M
3300019270Metatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin17_10_metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300020583Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-MEnvironmentalOpen in IMG/M
3300021402Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-OEnvironmentalOpen in IMG/M
3300021420Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-MEnvironmentalOpen in IMG/M
3300021478Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-MEnvironmentalOpen in IMG/M
3300021559Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-MEnvironmentalOpen in IMG/M
3300021560Tropical forest soil microbial communities from Panama - MetaG Plot_4EnvironmentalOpen in IMG/M
3300021861Metatranscriptome of freshwater sediment microbial communities from post-fracked creek in Pennsylvania, United States - ABR_2016 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300022525Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-4-M (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300024225Spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic ? CZU5Host-AssociatedOpen in IMG/M
3300024347Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16fungal (PacBio error correction)EnvironmentalOpen in IMG/M
3300025463Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_17_10 (SPAdes)EnvironmentalOpen in IMG/M
3300025612Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_20_10 (SPAdes)EnvironmentalOpen in IMG/M
3300025945Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300026514Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DL-13-BEnvironmentalOpen in IMG/M
3300026557Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungalEnvironmentalOpen in IMG/M
3300027080Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF009 (SPAdes)EnvironmentalOpen in IMG/M
3300027497Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_1_NS metaG (SPAdes)EnvironmentalOpen in IMG/M
3300027625Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_c_BC metaG (SPAdes)EnvironmentalOpen in IMG/M
3300027853Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1 (SPAdes)EnvironmentalOpen in IMG/M
3300027854Peat soil microbial communities from Weissenstadt, Germany - SII-2010 (SPAdes)EnvironmentalOpen in IMG/M
3300027889Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6 (SPAdes)EnvironmentalOpen in IMG/M
3300027915Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2013 (SPAdes)EnvironmentalOpen in IMG/M
3300028536Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300028731Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_E1_2EnvironmentalOpen in IMG/M
3300028776Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_E2_1EnvironmentalOpen in IMG/M
3300028800Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaGHost-AssociatedOpen in IMG/M
3300028871Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N2_1EnvironmentalOpen in IMG/M
3300029882III_Palsa_E1 coassemblyEnvironmentalOpen in IMG/M
3300029915III_Bog_E1 coassemblyEnvironmentalOpen in IMG/M
3300029943I_Palsa_N3 coassemblyEnvironmentalOpen in IMG/M
3300029993Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_E2_2EnvironmentalOpen in IMG/M
3300030007I_Palsa_E1 coassemblyEnvironmentalOpen in IMG/M
3300030740Forest Soil Metatranscriptomes Boreal Montmorency Forest, Quebec, Canada ARE Co-assemblyEnvironmentalOpen in IMG/M
3300031234Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_2EnvironmentalOpen in IMG/M
3300031261Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_E1_1EnvironmentalOpen in IMG/M
3300031573Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111EnvironmentalOpen in IMG/M
3300031708FICUS49499 Metagenome Czech Republic combined assemblyEnvironmentalOpen in IMG/M
3300031954Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)EnvironmentalOpen in IMG/M
3300032160Sb_50d combined assembly (MetaSPAdes)EnvironmentalOpen in IMG/M
3300032174Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05EnvironmentalOpen in IMG/M
3300032897Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.5EnvironmentalOpen in IMG/M
3300032954Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.2EnvironmentalOpen in IMG/M
3300034163Peat soil microbial communities from wetlands in Alaska, United States - Goldstream_04D_14EnvironmentalOpen in IMG/M
3300034199Peat soil microbial communities from wetlands in Alaska, United States - Goldstream_01D_14EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
JGI12649J13570_102959513300001175Forest SoilQVLQIALESPLPALREEETTQPIAPLTSATEDSPATHQ*
Ga0062385_1060266823300004080Bog Forest SoilMHFVDTMDQVLQIALESPLPSFREEETSQPIAPLTSNTGDSPAAHQ*
Ga0062385_1067050823300004080Bog Forest SoilMHFVDTMDQVLQIALESPLPSFREEETTQPIAPLTSSTGDSPAAHQ*
Ga0058884_130859513300004135Forest SoilLHFVDTMDQVLQIALVSPLPSLSEDVTTQPIAPLTSSTDDSPAAHQ*
Ga0070732_1048783623300005542Surface SoilVDTMDQVLSIALESPLPKFEEETTTQPIAPLTTTTPESPTAHQ*
Ga0066661_1008172913300005554SoilVDTMDQVLQIALEGPLPTIEEEVTRPIAPPLTSTTSDSPTAHQ*
Ga0068857_10169887013300005577Corn RhizosphereQVLQIALESPLPKMAEEVTEPIAPPLTTGNSDAPTAHQ*
Ga0066691_1014273213300005586SoilLHFVDTMDQVLQIALESPLPTLDEVVTQPIAPLTSGTEQSPTTHQ*
Ga0066691_1033707213300005586SoilDTMDQVLQIALEGPLPKLEDEAARTIAPLTSTTGDSPTAHQ*
Ga0070761_1012808223300005591SoilQIALESALPSLSEEEAAHPIAPLTDVPEDSPAARQ*
Ga0075019_1090593813300006086WatershedsTMDQVLQIALEAPLPKIEEEGTQPIAPPLTSTTSDSPTAHQ*
Ga0075030_10065683923300006162WatershedsVDTMDQVLQIALEGPLPKIEEEVTQPIAPPLTSTTSDSPTAHQ*
Ga0070712_10192149213300006175Corn, Switchgrass And Miscanthus RhizosphereDTMDQVLQIALESPLPKLDEEPTQPIAPLTTGTPDAPTAHQ*
Ga0102924_115351313300007982Iron-Sulfur Acid SpringAMKMHFVDTMDQVLQIALESPLQSISEEETTRPIAPLTSNTGDSPAAHQ*
Ga0102924_133602313300007982Iron-Sulfur Acid SpringKLHFVDTMDQVLQIALESPLPSLDAEIERPIAPLTTGSPEAPTAHQ*
Ga0099830_1157622013300009088Vadose Zone SoilLHFVDTMDQVLQIALESPLPAFSEDVTAQPIAPLTSTTNESPATHQ*
Ga0099827_1049156023300009090Vadose Zone SoilDTMDQVLQIALESPLPTLSEDVTAQPIAPLTSGAEESPATHQ*
Ga0099792_1081108013300009143Vadose Zone SoilVLQIALESPLPTLEDEAARPIAPLTSTTGDSPAAHQ*
Ga0116221_120837533300009523Peatlands SoilTMDQVLQIALEAPLPASVEETAQPLAPPLTTGSAEAPTAHQ*
Ga0116105_100519913300009624PeatlandMDQVLAIALESPLPKLDEEVVQPIAPPLTSDSTDAPTAHQ*
Ga0116215_112581213300009672Peatlands SoilQVLQIALESPLPASEPDAQPIAPPLTTVATDAPTAHQ*
Ga0116216_1045178413300009698Peatlands SoilHFVDTMDQVLQIALESAPPKIDEEGTQPIAPPLTSSTTDATTAHQ*
Ga0116101_113471223300009759PeatlandFVDTMDQVLQIALESPLPVRSDDETQPIAPPPLTSSTGDTPTAHQ*
Ga0116219_1024158923300009824Peatlands SoilVDTMDQVLQIALESPLPTLSEDEATRPIAPLTSSTGDSPAAHQ*
Ga0126373_1136367513300010048Tropical Forest SoilIALESPLPKIEEEATQAIAPPLTSTTPESPTAHQ*
Ga0126377_1114419533300010362Tropical Forest SoilAIALESPLPKIEEEATQAIAPPLTSTTPESPTAHQ*
Ga0126379_1222105113300010366Tropical Forest SoilFKLHFVDTMDQVLQIALESPLPKLEEGVVTQPIAPPLTSTTVEAPATHQ*
Ga0126383_1026779313300010398Tropical Forest SoilMDQVLQIALEAPLPTVVDEVTQPIAPALTSTIPESPTAHQ*
Ga0137393_1133930913300011271Vadose Zone SoilDTMDQVLQIALESPLPTLEDEAARPIAPLTSTTGDSPAAHQ*
Ga0137389_1085784213300012096Vadose Zone SoilQVLQVALESPLPKMEETVPQPIAPMTSDTGESPATHQ*
Ga0137361_1047096513300012362Vadose Zone SoilMKMHFVDTMDQVLQIALESALPSLGEDVTAQPIAPLTSSTTDTPAAHQ*
Ga0181537_1115885713300014201BogIALETALPALSEDVPTQPIAPLTSETGDSPAAHQ*
Ga0182024_1284573013300014501PermafrostTMDQVLQIALEGPLPKMEEEVAQQIAPLTSTPTEGPATHQ*
Ga0132255_10576726323300015374Arabidopsis RhizosphereVLQIALEGPLPKIEEEVTQPIAPPLTSTTADSPTAHQ*
Ga0182041_1019244013300016294SoilQVLQIALEAPLPKMIEEEVAQPIAPALTSSTPESPTAHQ
Ga0182039_1088324233300016422SoilQIALEGPLPKIVEEVTQPIAPALTSTTSDSPTAHQ
Ga0187802_1029614013300017822Freshwater SedimentRNSMKLHFVDTMDQVLQLALESAPPQIEELASQPIAPPLTSRTTEAPTAHQ
Ga0187818_1001909013300017823Freshwater SedimentTMDQVLQIALEAPLPKIEEEVTQPIAPQLTSTTPDSPTAHQ
Ga0187781_1067249213300017972Tropical PeatlandFVDTMDQVLQLALESPLPKATEEITQAIAPPLTATTSDSPTAHQ
Ga0187781_1088764913300017972Tropical PeatlandAMKMHFVDTMDQVLQIALVSPLPTLQEEDTAQPIAPLTSSTGDSPAAHQ
Ga0187780_1100498823300017973Tropical PeatlandFVDTMDQVLAIALESPLPKIEEEGTHPIAPPLTATTEAPTAHQ
Ga0187782_1002896913300017975Tropical PeatlandQIALESALPQIVEDATQPIAPPLTTGTGDVPTAHQ
Ga0187782_1013607213300017975Tropical PeatlandHFVDTMDQVLAIALESPLPKIEEEGTQPIAPPLTTGTAEAPTAHQ
Ga0187805_1055741913300018007Freshwater SedimentMKLHFVDTMDQVLQIALESAPPQIEELGSQPIAPPLSPATEGPAAHQ
Ga0187863_1008096733300018034PeatlandHFVDTMDQVLQIALESPLPKLDEEPTQPIAPLTTGSTDAPTAHQ
Ga0187871_1060862123300018042PeatlandMKMHFVDTMDQVLQIALESPLQSISEDDTSRPIAPLTSGPGDSPTAHQ
Ga0187772_1051529123300018085Tropical PeatlandVLQIALEGPLPASVEETAQPLAPPLTTTTEAPAAHQ
Ga0187771_1018080933300018088Tropical PeatlandFVDTMDQVLQIALEAPLPARVEETAQPLAPPLTASTPEAPTAHQ
Ga0187771_1160600913300018088Tropical PeatlandDTMDQVLQIALEGPLPSLSEDVTAQPIAPPPLTSGTGDSPTAHQ
Ga0187771_1169827623300018088Tropical PeatlandLHFVDTMDQVLAIAFESPLPKIEEEGTHPIAPPLTATTEAPTAHQ
Ga0187770_1127644623300018090Tropical PeatlandFVDTMDQVLQIALESPLPKIVEEETTQAIAPPLTTSTTDAPAAHQ
Ga0181512_105874613300019270PeatlandLHFVDTMDQVLQIALESPLPKIDAEVAQAIAPLTSDTVGSPAAHQ
Ga0210401_1083374023300020583SoilHFVDTMDQVLQIALESPLQAINEDVTAQPIAPLTSVEESPATHQ
Ga0210385_1018517433300021402SoilLQIALVSPLPTMSDEETTQPITPPLTSSTGESPATHQ
Ga0210385_1112064123300021402SoilLHFVDTMDQVLQIALESALPTLGEDVTTQPIAPLTSSTGDSPAAHQ
Ga0210394_1151086223300021420SoilQVLQIALESPLPSISEDVSSQPIAPLTSSTEDSPAAHQ
Ga0210402_1073824513300021478SoilLQIALESPLPKIEEEATQPIAPPLTTGTGDSPTAHQ
Ga0210409_1133194123300021559SoilNSMKMHFVDTMDQVLQIALESPLQAINEDVTAQPIAALTSVEESPATHQ
Ga0126371_1069480533300021560Tropical Forest SoilQVLQIALEAPLPTVVDEVTQPIAPALTSTTPESPTAHQ
Ga0126371_1069542813300021560Tropical Forest SoilMDQVLAIALESPLPKIEEAETTAQPIAPPPLTATTPETPTAHQ
Ga0213853_1015659523300021861WatershedsDTMDQVLQLALESAPPKIDEEGTQPIAPPLTSGTAVAPTAHQ
Ga0242656_113907013300022525SoilHFVDTMDQVLQIALVSPLPSLSEDVTTQPIAPLTSSTEDGPTAHQ
Ga0224572_104257323300024225RhizosphereMDQVLQIALESPLPSISEDVSSQPIAPLTSSTGDSPAAHQ
Ga0179591_113967623300024347Vadose Zone SoilMKMHFVDTMDQVLQIALESPLPALAEDVTAQPIAPLTSGPEESPATHQ
Ga0208193_101405713300025463PeatlandDQVLQIALESPLPALREEETTQPIAPLTSATEDSPATHQ
Ga0208691_106447223300025612PeatlandVLQIALESALPSLSEEEATHPIAPLTDVPEDSPAARQ
Ga0207679_1086484533300025945Corn RhizosphereVLQIALESPLPKMAEEVTEPIAPPLTTGNSDAPTAHQ
Ga0257168_102278523300026514SoilHFVDTMDQVLQIALESPLPTLEDEAARPIAPLTSSTGDSPAAHQ
Ga0179587_1082386033300026557Vadose Zone SoilVLAIALESPLPALGAVETTQPIAPLTSGTADSPAAHQ
Ga0208237_106069423300027080Forest SoilMDQVLQIALESPLPSLHEEETSQPIAPLTSGTGDSPAAHQ
Ga0208199_102393523300027497Peatlands SoilQIALESPLPAFHQEDTTQPIAPLTSNTGDSPTAHQ
Ga0208044_114229813300027625Peatlands SoilVDTMDQVLAIALESPLPPFHEEETAQPIAPLTSNTGDSPAAHQ
Ga0209274_1028501723300027853SoilDQVLQIALESALPSLSEEEAAHPIAPLTDVPEDSPAARQ
Ga0209517_1049304513300027854Peatlands SoilDTMDQVLQIALESPLPTLSEDEATRPIAPLTSSTGDSPAAHQ
Ga0209380_1028079813300027889SoilQVLQIALVSPLPSIGEDVTTQPIAPLTASTDDSPAAHQ
Ga0209069_1025642413300027915WatershedsDTMDQVLQIALVSPLPTLSEDETTQPIAPLTSSTGDSPATHQ
Ga0137415_1139151313300028536Vadose Zone SoilLQIALEGPLPKLEDETARPIAPLTSSTGDSPTAHQ
Ga0302301_108108923300028731PalsaDTMDQVLQIALESPLPLIGEDITAQPIAPLTSETGDSPAAHQ
Ga0302303_1010097513300028776PalsaHFVDTMDQVLQIALESPLPLIGEDITAQPIAPLTSETGDSPAAHQ
Ga0265338_1105971013300028800RhizosphereTMDQVLQIALEGPLPKMEEEVAQQIAPLTSTTTESPATHQ
Ga0302230_1005734023300028871PalsaDTMDQVLQIALESPLPTFHEEETTQPIAPLTSSTGDGPAAHQ
Ga0311368_1095217913300029882PalsaDTMDQVLQIALESALPTLGEDVTTQPIAPLTSSTGDSPAAHQ
Ga0311358_1037795223300029915BogVLQIALESPLPAMTEEESAHPIAPPLTSGAGESPATHQ
Ga0311340_1078355823300029943PalsaNAMKLHFVDTMDQVLQIALESALPALSEDVTTQPIAPLTSGTGDSPAAHQ
Ga0302304_1022245023300029993PalsaAMKMHFVDTMDQVLQIALESPLPLIGEDITAQPIAPLTSETGDSPAAHQ
Ga0311338_1103362423300030007PalsaMDQVLQIALESPLPTLHEEETAQPIAPLTSSTGDSPAAHQ
Ga0265460_1196967223300030740SoilFVDTMDQVLQIAVESPLPSILEEETAQPIAPLTSSTGDSPAAHQ
Ga0302325_1151768513300031234PalsaAMKLHFVDTMDQVLQIALESALPVLRDEETPIAREDEAAQPIAPLTSSTGDGPAAHQ
Ga0302325_1186198813300031234PalsaDQVLQIALESPLPKIDAEVAQTIAPLTSDSVGSPAAHQ
Ga0302140_1105969723300031261BogTMDQVLQIALESPLPAMTEEESAHPIAPPLTSGAGESPATHQ
Ga0310915_1103569913300031573SoilDTMDQVLQIALEAPLPKMIEEEVAQPIAPALTSSTPESPTAHQ
Ga0310686_10137775213300031708SoilDQVLQIALESPLPALNEDVIAQPIAPPLTSGADESSTTHQ
Ga0310686_10713570113300031708SoilVLQIALESPLPSIGEDITAQPIAPLTSGAEDSPAAHQ
Ga0310686_10950450813300031708SoilFVDTMDQVLQIALESPLPTFHAEETTQPIAPLTSNPGDSPTAHQ
Ga0306926_1046927113300031954SoilFVDTMDQVLQIALEAPLPKMIEEEVAQPIAPALTSSTPESPTAHQ
Ga0311301_1160287423300032160Peatlands SoilYQVLQLALEGPLPKVVEEGTQPIAPLTSSTSDTPTAHQ
Ga0307470_1007637313300032174Hardwood Forest SoilVDTMDQVLQIALEGPLPTIEEEVTRPIAPPLTSTTSDSPTAHQ
Ga0307470_1009061113300032174Hardwood Forest SoilNAMKLHFVDTMDQVLAIALESPLPTFTEDVTAQPIAPLTSTTTESPATHQ
Ga0335071_1087954013300032897SoilLAIALESPLPKVEEEVTAQPIAPPLTSTTTDTTTAHQ
Ga0335083_1134754313300032954SoilDTMDQVLQIALEAPLSAIEEATTQPIAPLTTSTPEGTTAHQ
Ga0370515_0468989_408_5303300034163Untreated Peat SoilMDQVLQIALESPLPSIGEDITAQPIAPLTSGAEDSPATHQ
Ga0370514_079748_694_8163300034199Untreated Peat SoilMDQVLQIALESPLPSIGEDITAQPIAPLTSETGDSPAAHQ


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