Metagenome / Metatranscriptome Family F101598

Overview

Basic Information

• Family ID: F101598
• Family Type: Metagenome / Metatranscriptome
• Number of Sequences: 102
• Average Sequence Length: 48 residues
• Representative Sequence: TTRNGYHMAFWKAGDLEYCAVSDTGWNELLGLVRLLQDLSARDIRE
• Number of Associated Samples: 95
• Number of Associated Scaffolds: 102

Quality Assessment

• Transcriptomic Evidence: Yes
• Most common taxonomic group: Unclassified
• % of genes with valid RBS motifs: 0.00 %
• % of genes near scaffold ends (potentially truncated): 0.00 %
• % of genes from short scaffolds (< 2000 bps): 0.00 %
• Associated GOLD sequencing projects: 92
• AlphaFold2 3D model prediction: Yes
• 3D model pTM-score: 0.68

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Most Common Taxonomy

• Group: Unclassified (100.000 % of family members)
• NCBI Taxonomy ID: N/A
• Taxonomy: N/A

Most Common Ecosystem

• GOLD Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (18.628 % of family members)
• Environment Ontology (ENVO): Unclassified (24.510 % of family members)
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline) (56.863 % of family members)

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure

• Classification: Globular
• Signal Peptide: No
• Secondary Structure distribution:
  α-helix: 27.03%
  β-sheet: 22.97%
  Coil/Unstructured: 50.00%

Predicted 3D Structure

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 102 Family Scaffolds
PF00149	Metallophos	40.20
PF01244	Peptidase_M19	3.92
PF04461	DUF520	2.94
PF04366	Ysc84	2.94
PF13473	Cupredoxin_1	2.94
PF01292	Ni_hydr_CYTB	1.96
PF08534	Redoxin	1.96
PF00127	Copper-bind	1.96
PF12850	Metallophos_2	0.98
PF16525	MHB	0.98
PF00582	Usp	0.98
PF05239	PRC	0.98
PF06123	CreD	0.98
PF04185	Phosphoesterase	0.98
PF00005	ABC_tran	0.98
PF01914	MarC	0.98

Neighboring Clusters of Orthologous Genes (COGs)

COG ID	Name	Functional Category	% Frequency in 102 Family Scaffolds
COG2355	Zn-dependent dipeptidase, microsomal dipeptidase homolog	Posttranslational modification, protein turnover, chaperones [O]	3.92
COG1666	Cyclic di-GMP-binding protein YajQ, UPF0234 family	Signal transduction mechanisms [T]	2.94
COG2930	Lipid-binding SYLF domain, Ysc84/FYVE family	Lipid transport and metabolism [I]	2.94
COG1969	Ni,Fe-hydrogenase I cytochrome b subunit	Energy production and conversion [C]	1.96
COG2864	Cytochrome b subunit of formate dehydrogenase	Energy production and conversion [C]	1.96
COG3038	Cytochrome b561	Energy production and conversion [C]	1.96
COG3658	Cytochrome b subunit of Ni2+-dependent hydrogenase	Energy production and conversion [C]	1.96
COG4117	Thiosulfate reductase cytochrome b subunit	Inorganic ion transport and metabolism [P]	1.96
COG2095	Small neutral amino acid transporter SnatA, MarC family	Amino acid transport and metabolism [E]	0.98
COG3511	Phospholipase C	Cell wall/membrane/envelope biogenesis [M]	0.98
COG4452	Inner membrane protein CreD involved in colicin E2 resistance	Defense mechanisms [V]	0.98

Phylogeny

NCBI Taxonomy

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	100.00 %

Environmental Properties

Associated Habitat Types

Ecosystem

Habitat	Taxonomy	Distribution
Environmental	Environmental	92.16%
Host-Associated	Host-Associated	7.84%

Class

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	79.41%
Aquatic	Environmental → Aquatic	12.75%
Plants	Host-Associated → Plants	6.86%
Arthropoda	Host-Associated → Arthropoda	0.98%

Category

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	62.75%
Peat	Environmental → Terrestrial → Peat	16.67%
Freshwater	Environmental → Aquatic → Freshwater	10.78%
Rhizoplane	Host-Associated → Plants → Rhizoplane	3.92%
Rhizosphere	Host-Associated → Plants → Rhizosphere	1.96%
Marine	Environmental → Aquatic → Marine	0.98%
Sediment	Environmental → Aquatic → Sediment	0.98%
Digestive System	Host-Associated → Arthropoda → Digestive System	0.98%
Peat Moss	Host-Associated → Plants → Peat Moss	0.98%

Type

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	37.25%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	16.67%
Loam	Environmental → Terrestrial → Soil → Loam	15.69%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	10.78%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	9.80%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	3.92%
Soil	Host-Associated → Plants → Rhizosphere → Soil	1.96%
Wetlands	Environmental → Aquatic → Marine → Wetlands	0.98%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.98%
Gut	Host-Associated → Arthropoda → Digestive System → Gut	0.98%
Unclassified	Host-Associated → Plants → Peat Moss → Unclassified	0.98%

Subtype

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	23.53%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	16.67%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	12.75%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	10.78%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	7.84%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	6.86%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	3.92%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	2.94%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	2.94%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	2.94%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	1.96%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	1.96%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	0.98%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.98%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.98%
Unclassified	Host-Associated → Arthropoda → Digestive System → Gut → Unclassified	0.98%
Unclassified	Host-Associated → Plants → Peat Moss → Unclassified → Unclassified	0.98%

Habitat

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	18.63%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	12.75%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	9.80%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	6.86%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	4.90%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	3.92%
Palsa	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Palsa	3.92%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	2.94%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	2.94%
Bog	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog	2.94%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	2.94%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	1.96%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	1.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.96%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	1.96%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost	1.96%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	0.98%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.98%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	0.98%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil	0.98%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.98%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.98%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.98%
Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Soil	0.98%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.98%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.98%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.98%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.98%
Fen	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen	0.98%
Termite Gut	Host-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut	0.98%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.98%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.98%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.98%
Host-Associated	Host-Associated → Plants → Peat Moss → Unclassified → Unclassified → Host-Associated	0.98%

Associated Samples

Taxon OID	Sample Name	Habitat Type
2170459005	Grass soil microbial communities from Rothamsted Park, UK - July 2009 direct MP BIO1O1 lysis 0-21cm	Environmental
3300004080	Coassembly of ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental
3300004092	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental
3300004152	Coassembly of ECP12_OM1, ECP12_OM2, ECP12_OM3	Environmental
3300004635	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental
3300005171	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_126	Environmental
3300005205	Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_TuleC_D2	Environmental
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental
3300005340	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG	Environmental
3300005364	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG	Host-Associated
3300005561	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_148	Environmental
3300005564	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG	Host-Associated
3300005602	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2	Environmental
3300005610	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3	Environmental
3300005617	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2	Host-Associated
3300005712	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4	Environmental
3300005843	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2	Host-Associated
3300005844	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2	Host-Associated
3300005921	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6	Environmental
3300005938	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Permafrost soil replicate 2 DNA2013-191	Environmental
3300006057	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2012	Environmental
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental
3300006881	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2	Host-Associated
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental
3300009518	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_16_150	Environmental
3300009635	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_11_10	Environmental
3300009665	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_20_10	Environmental
3300009709	Host-associated microbial communities from peat moss isolated from Minnesota, USA - S1T2_Fb - Sphagnum magellanicum MG	Host-Associated
3300009826	Embiratermes neotenicus P1 segment gut microbial communities from Petit-Saut dam, French Guiana - Emb289 P1	Host-Associated
3300010379	Sb_50d combined assembly	Environmental
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental
3300012922	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG	Environmental
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental
3300012944	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)	Environmental
3300014164	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_30_metaG	Environmental
3300014489	Permafrost microbial communities from Stordalen Mire, Sweden - 812P2M metaG	Environmental
3300014495	Permafrost microbial communities from Stordalen Mire, Sweden - 712P3M metaG	Environmental
3300014501	Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)	Environmental
3300014657	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_10_metaG	Environmental
3300015054	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (PacBio error correction)	Environmental
3300016728	Metatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin01_10_metaT (Metagenome Metatranscriptome)	Environmental
3300018022	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_11_40	Environmental
3300018062	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP15_20_MG	Environmental
3300018086	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_10_MG	Environmental
3300019789	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (PacBio error correction)	Environmental
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental
3300020582	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O	Environmental
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental
3300021180	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O	Environmental
3300021181	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O	Environmental
3300021401	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O	Environmental
3300021403	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O	Environmental
3300021404	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-O	Environmental
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental
3300021477	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-O	Environmental
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental
3300022531	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-28-M (Metagenome Metatranscriptome) (v2)	Environmental
3300022532	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-4-M (Metagenome Metatranscriptome) (v2)	Environmental
3300022533	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-7-M (Metagenome Metatranscriptome) (v2)	Environmental
3300022709	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O (Metagenome Metatranscriptome)	Environmental
3300026342	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_146 (SPAdes)	Environmental
3300026496	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NI-69-A	Environmental
3300027167	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF034 (SPAdes)	Environmental
3300027266	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM2H0_M2 (SPAdes)	Environmental
3300027645	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2 (SPAdes)	Environmental
3300027884	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2 (SPAdes)	Environmental
3300027908	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 (SPAdes)	Environmental
3300028047	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)	Environmental
3300028536	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)	Environmental
3300028747	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E1_2	Environmental
3300029922	III_Fen_E1 coassembly	Environmental
3300029939	I_Bog_E3 coassembly	Environmental
3300029943	I_Palsa_N3 coassembly	Environmental
3300029944	II_Palsa_E1 coassembly	Environmental
3300029951	III_Palsa_N1 coassembly	Environmental
3300029955	II_Bog_E2 coassembly	Environmental
3300030399	II_Palsa_E2 coassembly	Environmental
3300030617	II_Palsa_N2 coassembly	Environmental
3300030693	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_N2_2	Environmental
3300031028	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E3_2	Environmental
3300031234	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_2	Environmental
3300031236	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_1	Environmental
3300031474	Fir Coassembly Site 11 - Champenoux / Amance forest	Environmental
3300031524	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Bog_T0_3	Environmental
3300031525	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_3	Environmental
3300031715	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05	Environmental
3300031823	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05	Environmental
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental
3300032893	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.1	Environmental

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
E41_01282110	2170459005	Grass Soil	VTRNGYHLVFWKVGDLQYCAVSDTAWEELLGLARLLQDRGAQEARQ
Ga0062385_106668361	3300004080	Bog Forest Soil	TLPADTTRNGYHLAFWQEGNLHYCAVSDTGWAELLKLVSLIRTAEGQEGHG*
Ga0062389_1049739002	3300004092	Bog Forest Soil	ALPADTTRNGYHLAFWQEGNLRYCAVSDTGWTELMKLVSLIRGAEGQESHG*
Ga0062386_1003757033	3300004152	Bog Forest Soil	SWAARSPAALPRDTTRSGYHLAFWRQGDIEYCAVSDTGWDELMGLVGLLRSASVRD*
Ga0062388_1014360822	3300004635	Bog Forest Soil	VSSKVTRNGYHLVFWQAGDLQYCAVSDTGWDELLGLVRLLQELGARDAR*
Ga0066677_103881732	3300005171	Soil	TRSGYHLAFWRVGNLEYCAVSDAGWDELRRLERLLRDLGAREQMP*
Ga0068999_100579131	3300005205	Natural And Restored Wetlands	TTRNGYHMAFWKAGDLEYCAVSDTGWNELLGLVRLLQDLSARDIRE*
Ga0066388_1044620673	3300005332	Tropical Forest Soil	MTRNGYHMTFWQVGNLQYCAVSDTGWDELMGLVRLLQEQSAKDSRE*
Ga0070689_1020485581	3300005340	Switchgrass Rhizosphere	RGLPSSTTRNGYHMVFWQVGDLQYCAVSDTGWNELHALVRLLQELGAREIGE*
Ga0070673_1007571831	3300005364	Switchgrass Rhizosphere	RGLPSSTTRNGYHMVFWQVGDLQYCAVSDAGWNELQALVRMLQKLGARENGE*
Ga0066699_111151941	3300005561	Soil	NTTRGGYHLAFWKAGDLEYCAVSDSGWDELLGLARLLRDLSSRDDRE*
Ga0070664_1014513251	3300005564	Corn Rhizosphere	LPATASRNGYRLAFWKDGNVAYCAVSDTGWEELLGLVHLLQKLPARE*
Ga0070762_109451042	3300005602	Soil	TTRNGYHLAFWRQGDLEYCAVSDTGWDELQGLVRLLRSASAREQS*
Ga0070763_109186032	3300005610	Soil	PRDATRNGYHIACWRAGNLNYCAVSDTGWDELNGLVRLLRDTSAAEAHEQHP*
Ga0068859_1026836071	3300005617	Switchgrass Rhizosphere	TTRNGYHMVFWQVGDLQYCAVSDAGWNELQALVRMLQELGARENGE*
Ga0070764_108450072	3300005712	Soil	GLPANATRNGYHLIFWKSGDLEYCAVSDTAPDELLALVRLLQGVSTPDARDSKN*
Ga0068860_1015970312	3300005843	Switchgrass Rhizosphere	PSSTTRNGYHMVFWHVGDLQYCAVSDAGWNELHALVRLLQELGAREIRE*
Ga0068862_1009427472	3300005844	Switchgrass Rhizosphere	PSSTTRNGYHMVFWQVGDLQYCAVSDAGWNELQALVRMLQELGARENGE*
Ga0070766_111826132	3300005921	Soil	HLAFWASGDLAYCAVSDIEWDELLGLAKLMQDSNERDS*
Ga0066795_101706121	3300005938	Soil	LPRNTTRNGYHLVFWRAGDLEYCAVSDTAWDELLGLVRLLRDLSARDGP*
Ga0075026_1008880291	3300006057	Watersheds	GYHLSFWKSGDLAYAAVSDTAWDELFGLERLLRERAAQDAPP*
Ga0070712_1019819762	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	PSTASRNGYRLAFWKDGNVAYCAVSDTGWDELLGLVHLLQKLPARE*
Ga0068865_1013055501	3300006881	Miscanthus Rhizosphere	STTRNGYHMVFWQVGDLQYCAVSDAGWNELHALVRMLQELGARENGE*
Ga0099829_115989331	3300009038	Vadose Zone Soil	RNGYHLAFWKTGNLEYCAVSDTAWGELIGLVRLLQEVSTGDAG*
Ga0116128_11312082	3300009518	Peatland	TRNGYHMAFWKSGNLVYCAVSDTAWDELHGLVVLLQDLGAHDNR*
Ga0116117_11747522	3300009635	Peatland	NGYHLSFWSAGNLEYCAVSDTGWDELDGLVRLLQALDAQDKRG*
Ga0116135_13822352	3300009665	Peatland	PSDTTRNGYHLAFWRSGNLDYCAVSDTGWDELRTLEKLLKKE*
Ga0116227_110516632	3300009709	Host-Associated	GLPKNTTRNGYHLAFWRIGNLEYCAVSDAGWDELNGLVQLLQNIGANDNLD*
Ga0123355_109409612	3300009826	Termite Gut	EFTTRNGYHLACWRVGNLQYCAVTDAGWDELAGLVRLLRDLGARDAR*
Ga0136449_1015319322	3300010379	Peatlands Soil	VTRNGYHLIFWKAGNLQYCAVSDTAWDELHGLVRLLQDLGAPDAR*
Ga0150983_117497291	3300011120	Forest Soil	AAQPSRSLPRDTTRNGYHLAFWRQGDLEYCAVSDTGWDELQGLVRLLRSASAREQS*
Ga0137399_105073931	3300012203	Vadose Zone Soil	LPVKVTRNGYHLVLWKADSLQYCAVSDIPWRELLGLVRLLQDPGARDARQ*
Ga0137377_112319611	3300012211	Vadose Zone Soil	NGYHLVLWKADSLQYCAVSDIAWRELLGLVRLLQDPGARDARQ*
Ga0137397_106992461	3300012685	Vadose Zone Soil	HLAFWKTGNLEYCAMSDTAWGELIGLVRLLRDVSTGEAG*
Ga0137394_102724361	3300012922	Vadose Zone Soil	GSLPRDTTRSGYHMAFWRQGDLAYCAVSDTGWDELLGLVHLMRSAGTHDGRE*
Ga0137419_113927111	3300012925	Vadose Zone Soil	KNTTRNGYRMAFWKDRDLEYCAVSDTGWAELMGLVRLLQELGARDAQE*
Ga0137410_103249252	3300012944	Vadose Zone Soil	GYHLAFWSAGNLEYCAVSDTGWAELLALERLLREASRAEARPE*
Ga0181532_103225182	3300014164	Bog	LPKNTTRNGYHLAFWKTGNLEYCAVSDTGWDELQGLVRLLQDLGAHDIRE*
Ga0182018_100686461	3300014489	Palsa	SWSASARYLPKSATRDGYHLLFWRTGDLEYCAVSDTGWDELEGLVQLLKNLSARDRPE*
Ga0182018_102722181	3300014489	Palsa	SWSASARYLPKSATRDGYHLLFWRTGDLEYCAVSDTGWDELQGLVQLLKNLSARDRPE*
Ga0182015_104356042	3300014495	Palsa	EVTRNGYHLLFWRTGDLEYCAVSDTGWDELQQLARLIQGLGARDRAQ*
Ga0182015_108155461	3300014495	Palsa	ASARYLPKSATRDGYHLLFWRTGDLEYCAVSDTGWDELRGLVQLLKNLSARDRPE*
Ga0182024_102065811	3300014501	Permafrost	TVTRNGYHLVFWKQGDLEYCAVSDTSRDELIGLARLIQSSDPL*
Ga0182024_108600791	3300014501	Permafrost	VTTRNGYHVVFWGAGNLEYCAVSDAGWQELQGLVGLLRALDARDARE*
Ga0181522_108596901	3300014657	Bog	HLAFWKSGDLEYCAVSDTGWDELKGLVSLLRDLGEGEAGAGG*
Ga0137420_13656032	3300015054	Vadose Zone Soil	RASPKNTTRNGYHMAFWKAGDLDYCAVSDTGWDELLGLVRLLRDLSARDARQ*
Ga0181500_14464011	3300016728	Peatland	VTRNGYHLIFWRSGDLEYCAVSDTAPDELLGLVHLLQGL
Ga0187864_102931302	3300018022	Peatland	TRNGYHMAFWKSGNLVYCAVSDTAWDELHGLVVLLQDLGAHDNR
Ga0187784_107875012	3300018062	Tropical Peatland	SAERRRALPERTTRAGYHLVCWSAGDLEYCAVSDAGWNELAGLERLLRDLAARDARE
Ga0187769_107217541	3300018086	Tropical Peatland	ALPERTTRAGYHLVCWSAGDLEYCAVSDAGWNELAGLERLLRDLAARDARE
Ga0137408_10763783	3300019789	Vadose Zone Soil	ASPKNTTRNGYHMAFWKAGDLEYCAVSDTGWDELLGLVRLLRDLSARDARQ
Ga0210407_111335761	3300020579	Soil	GAPSRHLPRDTTRNGYHLAFWRQGDIEYCAVSDTGWDELLGLVRLLRDLSARE
Ga0210399_106903352	3300020581	Soil	AASQRAAPRNTTRNGYHMAFWKAGDLEYCAVSDTGWDELLGLVRLLRDLSARDARQ
Ga0210395_101170323	3300020582	Soil	LPADTTRNGYRLAFWQEGNLRYCAVSDTGWAELLKLVSLIRTAEGQEGHG
Ga0210406_102648093	3300021168	Soil	LPPDTIRNGYRFVFWRSGNLEYCAVSDTGRDELQGLVRLLQDLAARG
Ga0210396_100927616	3300021180	Soil	NTTRNGYHLAFWRQGDIQYCAVSDTGWDELLGLVRLLSDLGARE
Ga0210396_112613231	3300021180	Soil	HTIRNGFQLMFWRSGDLDYCAVSDTAPDELLGLVRLLQGLGAGGT
Ga0210388_103796501	3300021181	Soil	LPPDSIRNGYRFVFWRSGNLEYCAVSDTGRDELQGLVRLLQDLAARG
Ga0210393_103372701	3300021401	Soil	NGYRFVFWRSGNLEYCAVSDTGRDELQGLVRLLQDLAARG
Ga0210397_107556091	3300021403	Soil	GLPKNTTRNGYHLAFWKTGNLVYCAVSDTAWDELLGLARLLQDSSAPDAR
Ga0210389_115231602	3300021404	Soil	YHLAFWKSGNVGYCAVSDTGWVELQALRRLLQEQAAGDVPRE
Ga0210394_112875821	3300021420	Soil	PSNTTRNGYHLAFWKTGDLLYCAVSDTAWDELLDLTRLLQDLSAHDTPLMARPAP
Ga0210384_113153762	3300021432	Soil	APPSRSLPRDTTRNGYHLAFWRQGDLEYCAVSDTGWDELSGLVRLLRDLGARE
Ga0210398_108748861	3300021477	Soil	DQGGLPKNTTRNGYHLAFWKTGNLVYCAVSDTAWDELLGLARLLQDSSAPDAR
Ga0210402_100510191	3300021478	Soil	PSDTIRNGYRFVFWRSGNLEYCAVSDTGRDELQGLVRLLQDLAARG
Ga0242660_11239742	3300022531	Soil	RTFPDLTTRNGYHIAFWKVGNLQYCAVSDTGWEELLGLVRLLRDLGARDALQ
Ga0242655_101302162	3300022532	Soil	YLPANTTRNGYHLAFWRQGDIQYCAVSDTGWDELLGLVRLLSDLGARE
Ga0242662_102060092	3300022533	Soil	GYHLAFWKSGNLAYCAVSDTGWSELQELTRLLQQQAARDVPRE
Ga0222756_10725331	3300022709	Soil	RNGYHLAFWRQGYLEYCAVSDTGWDELSGLVRLLRDLGARE
Ga0209057_10876823	3300026342	Soil	YHLAFWRVGNLEYCAVSDAGWDELRRLERLLRDLGAREQMP
Ga0257157_10113533	3300026496	Soil	SQRASPKNTTRNGYHMAFWKAGDLDYCAVSDTGWDELLGLVRLLRDLSARDARQ
Ga0208096_1056322	3300027167	Forest Soil	TRSGYHVAFWRVGNLQYCAVSDAGWDELLALVRLLRDAGASDAR
Ga0209215_10078251	3300027266	Forest Soil	FPETTVRNGYHLAFWRMGNLEYCAVSDAGWEELRGLVRLLRDLGSREQTP
Ga0209117_10113663	3300027645	Forest Soil	LPDKVTRNGYHLIFWKAGNLQYCAVSDTAWDELLGLVRLLQDLGASEAR
Ga0209275_108316671	3300027884	Soil	PSRSLPRDTTRNGYHLAFWRQGDLEYCAVSDTGWDELQGLVRLLRSASAREQS
Ga0209006_108333921	3300027908	Forest Soil	PPDTIRNGYRFVFWRSGNLEYCAVSDTGRDELQGLVRLLQDLAARG
Ga0209006_108739732	3300027908	Forest Soil	RNGYHLVFWKTGNLEYCAVSDAAWGELIGLVRLLQDISTGDAG
Ga0209526_106776671	3300028047	Forest Soil	RRTFPDLTTRSGYHVAFWKVGNLQYCAVSDAGWEELLGLVRLLRDLGARDALQ
Ga0137415_112545581	3300028536	Vadose Zone Soil	PKNTTRNGYRMAFWKDRDLEYCAVSDTGWAELMGLVRLLQDLGARDAQE
Ga0302219_100280923	3300028747	Palsa	PKSTTRDGYHLLFWRAGDLAYCAVSDTGWEELQGLVALLQNLSSRDRPE
Ga0302219_100341691	3300028747	Palsa	AANRDSVPKDATLNGYHMAFWKTGNLVYCAVSDTGWDELRRLVQLLQE
Ga0311363_114721562	3300029922	Fen	MNTTRNGYHLAFWKSGNILYCAVSDTAWDELMGLVHLLQGLDTHDAH
Ga0311328_106140651	3300029939	Bog	NKAAMPKDTTRNGYHLVFWRAGNLQYCAVSDTAWNELQGLVRLLQDLSAQEG
Ga0311340_102761092	3300029943	Palsa	MRNGYHLVFWTAGDLQYCGVSDTSWDELLALARLLQNPAARDTGH
Ga0311352_101848484	3300029944	Palsa	NGYHLIFWKSGDLEYCAVSDTAPDELLGLVRLLQGLSTPDAQESKN
Ga0311371_107880512	3300029951	Palsa	VPQNTMRKGYRMVFWKAGDLGYCAVSDAGWTELKDLVGLIQDLSARDRP
Ga0311342_110545341	3300029955	Bog	YHMAFWKSGDLDYCAISDTAWNELLGLTGLLKDLGAHDGQ
Ga0311353_115197092	3300030399	Palsa	TRDGYHLLFWRAGDLDYCAVSDTGWDELQGLVQLLTNLGSRDHPE
Ga0311356_105398701	3300030617	Palsa	SGRGLPANTTRNGYHLAFWKVGNVGYCAISDTGWGELQTLMRLLQGLE
Ga0302313_103437691	3300030693	Palsa	NLPKSTTRDGYHLLFWRAGDLAYCAVSDTGWEELQGLVALLQNLSSRDRPE
Ga0302180_102000882	3300031028	Palsa	SWAADDRNLPKSATRDGYHLLFWRTGDLEYCAVSDTGWDELQGLVQLLKNLSSREHPE
Ga0302325_119927731	3300031234	Palsa	NGYHLMFWKSGDLEYCAVSDTAPDELLGLVRLLQGLGTPDARNSNN
Ga0302324_1032616361	3300031236	Palsa	PGLPANATRNGYHLIFWKSGDLEYCAVSDTAPDELLGLVHLLQGLSTGDARDSKN
Ga0170818_1040025501	3300031474	Forest Soil	KVTRNGYHFVFWKVGDLQYCAVSDTGWDELLGLVRLLQGLGGEDAR
Ga0302320_117008402	3300031524	Bog	AHQVGSPRNTTRNGYHLAFWRTGNLQYCAVSDTAWNELLGLAQLMQDMSTRDAR
Ga0302326_111994942	3300031525	Palsa	RSGYHLVFWRSGDLEYCAISDTAPDELLGLVRLLRGLGAEEARS
Ga0302326_122000822	3300031525	Palsa	TRNGYHLKFWKIGDLQYCAVSDTGWDELLGLVRLLQNLGAQDAPSQKLN
Ga0307476_105778622	3300031715	Hardwood Forest Soil	DGYHLAFWKTEDLVYCAVSDTAWDELFGLTRLMQDLSAQDTPLRAPPAP
Ga0307478_116627431	3300031823	Hardwood Forest Soil	YHLAFWRAGNLVYCAVSDTAWDELLGLARLLQDLNARDAPDAGVS
Ga0306921_127607491	3300031912	Soil	RNGYHLAFWNVGNLQYCAVSDAGWDELEGLVRLLRDLGTRDAQP
Ga0307472_1008670331	3300032205	Hardwood Forest Soil	HRTLPKNTARYGFHMAFWKAGDLEYCAVSDTGWDELLGLVRLLRDLSARDARQ
Ga0335069_109484962	3300032893	Soil	TRNGYHLACWKVGNVGYCAVSDTAWSELQGLVRLLQEQGARERE