NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F101595

Metagenome / Metatranscriptome Family F101595

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F101595
Family Type Metagenome / Metatranscriptome
Number of Sequences 102
Average Sequence Length 38 residues
Representative Sequence MDEEFRKKNRRLLIAIIVFAVGFTLLIILWKLSIYQKT
Number of Associated Samples 82
Number of Associated Scaffolds 102

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 4.90 %
% of genes near scaffold ends (potentially truncated) 15.69 %
% of genes from short scaffolds (< 2000 bps) 68.63 %
Associated GOLD sequencing projects 81
AlphaFold2 3D model prediction Yes
3D model pTM-score0.48

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (67.647 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil
(19.608 % of family members)
Environment Ontology (ENVO) Unclassified
(43.137 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(67.647 % of family members)



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Multiple Sequence Alignments

Select alignment to view:      


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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Transmembrane (alpha-helical) Signal Peptide: No Secondary Structure distribution: α-helix: 54.55%    β-sheet: 0.00%    Coil/Unstructured: 45.45%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.48
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 102 Family Scaffolds
PF00510COX3 33.33
PF01040UbiA 32.35
PF02628COX15-CtaA 6.86
PF01515PTA_PTB 2.94
PF00072Response_reg 1.96
PF00115COX1 1.96
PF13500AAA_26 0.98
PF13247Fer4_11 0.98
PF02790COX2_TM 0.98
PF00814TsaD 0.98
PF01757Acyl_transf_3 0.98
PF00293NUDIX 0.98
PF00871Acetate_kinase 0.98
PF02630SCO1-SenC 0.98

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 102 Family Scaffolds
COG1845Heme/copper-type cytochrome/quinol oxidase, subunit 3Energy production and conversion [C] 33.33
COG1612Heme A synthaseCoenzyme transport and metabolism [H] 6.86
COG0280Phosphotransacetylase (includes Pta, EutD and phosphobutyryltransferase)Energy production and conversion [C] 2.94
COG0282Acetate kinaseEnergy production and conversion [C] 0.98
COG0533tRNA A37 threonylcarbamoyltransferase TsaDTranslation, ribosomal structure and biogenesis [J] 0.98
COG1214tRNA A37 threonylcarbamoyladenosine modification protein TsaBTranslation, ribosomal structure and biogenesis [J] 0.98
COG1225PeroxiredoxinPosttranslational modification, protein turnover, chaperones [O] 0.98
COG1622Heme/copper-type cytochrome/quinol oxidase, subunit 2Energy production and conversion [C] 0.98
COG1999Cytochrome oxidase Cu insertion factor, SCO1/SenC/PrrC familyPosttranslational modification, protein turnover, chaperones [O] 0.98
COG3426Butyrate kinaseEnergy production and conversion [C] 0.98


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms67.65 %
UnclassifiedrootN/A32.35 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300000364|INPhiseqgaiiFebDRAFT_100685720Not Available1228Open in IMG/M
3300000364|INPhiseqgaiiFebDRAFT_101491018All Organisms → cellular organisms → Bacteria2448Open in IMG/M
3300000364|INPhiseqgaiiFebDRAFT_105717448All Organisms → cellular organisms → Bacteria2574Open in IMG/M
3300000893|AP72_2010_repI_A001DRAFT_1005332All Organisms → cellular organisms → Bacteria2465Open in IMG/M
3300001593|JGI12635J15846_10193373Not Available1352Open in IMG/M
3300001593|JGI12635J15846_10537787All Organisms → cellular organisms → Bacteria685Open in IMG/M
3300002245|JGIcombinedJ26739_100021739All Organisms → cellular organisms → Bacteria5532Open in IMG/M
3300002245|JGIcombinedJ26739_100202025All Organisms → cellular organisms → Bacteria1879Open in IMG/M
3300002245|JGIcombinedJ26739_100296717All Organisms → cellular organisms → Bacteria1501Open in IMG/M
3300005610|Ga0070763_10110046Not Available1399Open in IMG/M
3300005764|Ga0066903_101035186All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia1505Open in IMG/M
3300006028|Ga0070717_11134217Not Available712Open in IMG/M
3300006048|Ga0075363_100040724All Organisms → cellular organisms → Bacteria2449Open in IMG/M
3300006176|Ga0070765_100011348All Organisms → cellular organisms → Bacteria6265Open in IMG/M
3300009101|Ga0105247_10743964Not Available742Open in IMG/M
3300009665|Ga0116135_1357048Not Available586Open in IMG/M
3300009672|Ga0116215_1321231Not Available672Open in IMG/M
3300010047|Ga0126382_10630211All Organisms → cellular organisms → Bacteria888Open in IMG/M
3300010048|Ga0126373_10115618All Organisms → cellular organisms → Bacteria2502Open in IMG/M
3300010154|Ga0127503_11317512Not Available597Open in IMG/M
3300010339|Ga0074046_10025971All Organisms → cellular organisms → Bacteria4035Open in IMG/M
3300010339|Ga0074046_10875017Not Available524Open in IMG/M
3300010376|Ga0126381_100093788All Organisms → cellular organisms → Bacteria3814Open in IMG/M
3300012089|Ga0153924_1067290All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia704Open in IMG/M
3300012096|Ga0137389_11750818Not Available517Open in IMG/M
3300012202|Ga0137363_10019171All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae4557Open in IMG/M
3300012202|Ga0137363_10620269All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia913Open in IMG/M
3300012205|Ga0137362_11036689All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia698Open in IMG/M
3300012582|Ga0137358_10504190All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia815Open in IMG/M
3300012683|Ga0137398_10221031All Organisms → cellular organisms → Bacteria1254Open in IMG/M
3300012961|Ga0164302_10861326All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia691Open in IMG/M
3300012971|Ga0126369_10107180All Organisms → cellular organisms → Bacteria2543Open in IMG/M
3300012971|Ga0126369_11985824All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia670Open in IMG/M
3300014164|Ga0181532_10024910All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia4255Open in IMG/M
3300014165|Ga0181523_10015858All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia5169Open in IMG/M
3300016319|Ga0182033_11873808All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales545Open in IMG/M
3300016357|Ga0182032_10062609All Organisms → cellular organisms → Bacteria2474Open in IMG/M
3300018034|Ga0187863_10530771Not Available660Open in IMG/M
3300020579|Ga0210407_10353667Not Available1149Open in IMG/M
3300020579|Ga0210407_10871402All Organisms → cellular organisms → Bacteria692Open in IMG/M
3300020580|Ga0210403_10310103Not Available1293Open in IMG/M
3300020581|Ga0210399_10751774All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia799Open in IMG/M
3300020582|Ga0210395_10079270All Organisms → cellular organisms → Bacteria2419Open in IMG/M
3300021046|Ga0215015_10762792All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia1783Open in IMG/M
3300021171|Ga0210405_10197467Not Available1595Open in IMG/M
3300021178|Ga0210408_11374947Not Available533Open in IMG/M
3300021180|Ga0210396_10173648Not Available1931Open in IMG/M
3300021361|Ga0213872_10014368All Organisms → cellular organisms → Bacteria3694Open in IMG/M
3300021361|Ga0213872_10061399All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia1699Open in IMG/M
3300021372|Ga0213877_10000055All Organisms → cellular organisms → Bacteria12756Open in IMG/M
3300021377|Ga0213874_10005232All Organisms → cellular organisms → Bacteria3014Open in IMG/M
3300021384|Ga0213876_10278494Not Available889Open in IMG/M
3300021401|Ga0210393_10083303All Organisms → cellular organisms → Bacteria2536Open in IMG/M
3300021401|Ga0210393_10175709Not Available1727Open in IMG/M
3300021401|Ga0210393_11011224All Organisms → cellular organisms → Bacteria673Open in IMG/M
3300021402|Ga0210385_10133836Not Available1760Open in IMG/M
3300021405|Ga0210387_10488573All Organisms → cellular organisms → Bacteria1094Open in IMG/M
3300021439|Ga0213879_10061575Not Available1008Open in IMG/M
3300021479|Ga0210410_10218904Not Available1707Open in IMG/M
3300021479|Ga0210410_10474712Not Available1118Open in IMG/M
3300021559|Ga0210409_10107492All Organisms → cellular organisms → Bacteria2570Open in IMG/M
3300021560|Ga0126371_10355587All Organisms → cellular organisms → Bacteria1601Open in IMG/M
3300021560|Ga0126371_10461315All Organisms → cellular organisms → Bacteria1417Open in IMG/M
3300022530|Ga0242658_1144571All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia608Open in IMG/M
3300022557|Ga0212123_10019410All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae → Verrucomicrobium7910Open in IMG/M
3300024227|Ga0228598_1107932Not Available563Open in IMG/M
3300025910|Ga0207684_10017158All Organisms → cellular organisms → Bacteria6214Open in IMG/M
3300025922|Ga0207646_10084853All Organisms → cellular organisms → Bacteria2833Open in IMG/M
3300026551|Ga0209648_10718242All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia545Open in IMG/M
3300026557|Ga0179587_10294985Not Available1044Open in IMG/M
3300027063|Ga0207762_1030858Not Available819Open in IMG/M
3300027109|Ga0208603_1054503All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia606Open in IMG/M
3300027635|Ga0209625_1112717Not Available610Open in IMG/M
3300027651|Ga0209217_1110983Not Available778Open in IMG/M
3300027651|Ga0209217_1167007All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia604Open in IMG/M
3300027680|Ga0207826_1047273All Organisms → cellular organisms → Bacteria1194Open in IMG/M
3300027727|Ga0209328_10019673All Organisms → cellular organisms → Bacteria2060Open in IMG/M
3300027727|Ga0209328_10039284All Organisms → cellular organisms → Bacteria1455Open in IMG/M
3300027738|Ga0208989_10110452Not Available935Open in IMG/M
3300027738|Ga0208989_10198056All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia665Open in IMG/M
3300027812|Ga0209656_10006356All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae7592Open in IMG/M
3300027812|Ga0209656_10015023All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales4813Open in IMG/M
3300027825|Ga0209039_10002094All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia17414Open in IMG/M
3300027908|Ga0209006_10114018All Organisms → cellular organisms → Bacteria2391Open in IMG/M
3300027908|Ga0209006_10282245All Organisms → cellular organisms → Bacteria1422Open in IMG/M
3300028047|Ga0209526_10098614All Organisms → cellular organisms → Bacteria2057Open in IMG/M
3300028047|Ga0209526_10602115All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → unclassified Mycobacterium → Mycobacterium sp. AZCC_0083704Open in IMG/M
3300028780|Ga0302225_10275330Not Available800Open in IMG/M
3300028798|Ga0302222_10322320All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia602Open in IMG/M
3300028906|Ga0308309_10046222All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia3106Open in IMG/M
3300030007|Ga0311338_11080143Not Available772Open in IMG/M
3300030618|Ga0311354_10827637All Organisms → cellular organisms → Bacteria871Open in IMG/M
3300030740|Ga0265460_12779569Not Available525Open in IMG/M
3300031231|Ga0170824_122598738All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia703Open in IMG/M
3300031819|Ga0318568_10969738All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia525Open in IMG/M
3300031962|Ga0307479_10980020All Organisms → cellular organisms → Bacteria815Open in IMG/M
3300032160|Ga0311301_10050661All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia9516Open in IMG/M
3300032174|Ga0307470_11839272Not Available514Open in IMG/M
3300032261|Ga0306920_103834191Not Available549Open in IMG/M
3300032829|Ga0335070_10281905All Organisms → cellular organisms → Bacteria1617Open in IMG/M
3300032955|Ga0335076_10081776All Organisms → cellular organisms → Bacteria3169Open in IMG/M
3300033289|Ga0310914_11601625All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia555Open in IMG/M



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil19.61%
Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil16.67%
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil6.86%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil6.86%
PalsaEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa3.92%
Bog Forest SoilEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil2.94%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil2.94%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil2.94%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil2.94%
SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Soil2.94%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere2.94%
RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere2.94%
BogEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Bog1.96%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil1.96%
Bulk SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Bulk Soil1.96%
Peatlands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil1.96%
Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil1.96%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil1.96%
SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Soil1.96%
Bog Forest SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil1.96%
Plant RootsHost-Associated → Plants → Roots → Unclassified → Unclassified → Plant Roots1.96%
PeatlandEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Peatland0.98%
PeatlandEnvironmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland0.98%
SoilEnvironmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil0.98%
Iron-Sulfur Acid SpringEnvironmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring0.98%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil0.98%
Populus EndosphereHost-Associated → Plants → Roots → Bulk Soil → Unclassified → Populus Endosphere0.98%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere0.98%
Attine Ant Fungus GardensHost-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens0.98%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300000364Soil microbial communities from Great Prairies - Iowa, Native Prairie soilEnvironmentalOpen in IMG/M
3300000893Forest soil microbial communities from Amazon forest - Pasture72 2010 replicate I A001EnvironmentalOpen in IMG/M
3300001593Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2EnvironmentalOpen in IMG/M
3300002245Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)EnvironmentalOpen in IMG/M
3300005610Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3EnvironmentalOpen in IMG/M
3300005764Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)EnvironmentalOpen in IMG/M
3300006028Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaGEnvironmentalOpen in IMG/M
3300006048Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3Host-AssociatedOpen in IMG/M
3300006176Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5EnvironmentalOpen in IMG/M
3300009101Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaGHost-AssociatedOpen in IMG/M
3300009665Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_20_10EnvironmentalOpen in IMG/M
3300009672Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_2_FS metaGEnvironmentalOpen in IMG/M
3300010047Tropical forest soil microbial communities from Panama - MetaG Plot_30EnvironmentalOpen in IMG/M
3300010048Tropical forest soil microbial communities from Panama - MetaG Plot_11EnvironmentalOpen in IMG/M
3300010154Soil microbial communities from Willow Creek, Wisconsin, USA - WC-WI-TBF metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300010339Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM3EnvironmentalOpen in IMG/M
3300010376Tropical forest soil microbial communities from Panama - MetaG Plot_28EnvironmentalOpen in IMG/M
3300012089Attine ant fungus gardens microbial communities from New Jersey, USA - TSNJ008 MetaGHost-AssociatedOpen in IMG/M
3300012096Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaGEnvironmentalOpen in IMG/M
3300012202Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaGEnvironmentalOpen in IMG/M
3300012205Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaGEnvironmentalOpen in IMG/M
3300012582Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaGEnvironmentalOpen in IMG/M
3300012683Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaGEnvironmentalOpen in IMG/M
3300012961Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MGEnvironmentalOpen in IMG/M
3300012971Tropical forest soil microbial communities from Panama - MetaG Plot_1EnvironmentalOpen in IMG/M
3300014164Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_30_metaGEnvironmentalOpen in IMG/M
3300014165Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_30_metaGEnvironmentalOpen in IMG/M
3300016319Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00HEnvironmentalOpen in IMG/M
3300016357Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000EnvironmentalOpen in IMG/M
3300018034Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_11_10EnvironmentalOpen in IMG/M
3300020579Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-MEnvironmentalOpen in IMG/M
3300020580Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-MEnvironmentalOpen in IMG/M
3300020581Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-MEnvironmentalOpen in IMG/M
3300020582Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-OEnvironmentalOpen in IMG/M
3300021046Soil microbial communities from Shale Hills CZO, Pennsylvania, United States - 90cm depthEnvironmentalOpen in IMG/M
3300021171Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-MEnvironmentalOpen in IMG/M
3300021178Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-MEnvironmentalOpen in IMG/M
3300021180Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-OEnvironmentalOpen in IMG/M
3300021361Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2Host-AssociatedOpen in IMG/M
3300021372Vellozia epidendroides bulk soil microbial communities from rupestrian grasslands, the National Park of Serra do Cipo, Brazil - BS_R01EnvironmentalOpen in IMG/M
3300021377Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7Host-AssociatedOpen in IMG/M
3300021384Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9Host-AssociatedOpen in IMG/M
3300021401Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-OEnvironmentalOpen in IMG/M
3300021402Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-OEnvironmentalOpen in IMG/M
3300021405Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-OEnvironmentalOpen in IMG/M
3300021439Vellozia epidendroides bulk soil microbial communities from rupestrian grasslands, the National Park of Serra do Cipo, Brazil - BS_R03EnvironmentalOpen in IMG/M
3300021479Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-MEnvironmentalOpen in IMG/M
3300021559Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-MEnvironmentalOpen in IMG/M
3300021560Tropical forest soil microbial communities from Panama - MetaG Plot_4EnvironmentalOpen in IMG/M
3300022530Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-30-O (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300022557Paint Pots_combined assemblyEnvironmentalOpen in IMG/M
3300024227Spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic - CZU4Host-AssociatedOpen in IMG/M
3300025910Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025922Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300026551Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)EnvironmentalOpen in IMG/M
3300026557Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungalEnvironmentalOpen in IMG/M
3300027063Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 37 (SPAdes)EnvironmentalOpen in IMG/M
3300027109Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF008 (SPAdes)EnvironmentalOpen in IMG/M
3300027635Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_M2 (SPAdes)EnvironmentalOpen in IMG/M
3300027651Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM3H0_M2 (SPAdes)EnvironmentalOpen in IMG/M
3300027680Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 80 (SPAdes)EnvironmentalOpen in IMG/M
3300027727Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM3H0_M1 (SPAdes)EnvironmentalOpen in IMG/M
3300027738Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM3_M1 (SPAdes)EnvironmentalOpen in IMG/M
3300027812Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM2 (SPAdes)EnvironmentalOpen in IMG/M
3300027825Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM1 (SPAdes)EnvironmentalOpen in IMG/M
3300027908Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 (SPAdes)EnvironmentalOpen in IMG/M
3300028047Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)EnvironmentalOpen in IMG/M
3300028780Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E3_2EnvironmentalOpen in IMG/M
3300028798Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E2_2EnvironmentalOpen in IMG/M
3300028906Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)EnvironmentalOpen in IMG/M
3300030007I_Palsa_E1 coassemblyEnvironmentalOpen in IMG/M
3300030618II_Palsa_E3 coassemblyEnvironmentalOpen in IMG/M
3300030740Forest Soil Metatranscriptomes Boreal Montmorency Forest, Quebec, Canada ARE Co-assemblyEnvironmentalOpen in IMG/M
3300031231Coassembly Site 11 (all samples) - Champenoux / Amance forestEnvironmentalOpen in IMG/M
3300031819Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f21EnvironmentalOpen in IMG/M
3300031962Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515EnvironmentalOpen in IMG/M
3300032160Sb_50d combined assembly (MetaSPAdes)EnvironmentalOpen in IMG/M
3300032174Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05EnvironmentalOpen in IMG/M
3300032261Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)EnvironmentalOpen in IMG/M
3300032829Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.3EnvironmentalOpen in IMG/M
3300032955Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.5EnvironmentalOpen in IMG/M
3300033289Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
INPhiseqgaiiFebDRAFT_10068572023300000364SoilMQEDYKKKNRRLFIAIVVFAIGFTVLIILWKLSIYQKI*
INPhiseqgaiiFebDRAFT_10149101823300000364SoilMDKNLRKKNRRLLIAIIIFALALCAIVILWKLSIYQKI*
INPhiseqgaiiFebDRAFT_10571744833300000364SoilMDEDLRKKNRRLLIGIIIFALALCAIVILWKLSIYQKI*
AP72_2010_repI_A001DRAFT_100533233300000893Forest SoilMDEELRRKNRRLWIALVTFAILLTLLVILWKLSIYQKF*
JGI12635J15846_1019337323300001593Forest SoilMEEEVRKKNRRLLIAIVVFAIGFTVLIILWKLSIYQKT*
JGI12635J15846_1053778723300001593Forest SoilMQEDYRKKNRRLLIVFIVFAVGFTVAIILWKLSIYQKF*
JGIcombinedJ26739_10002173943300002245Forest SoilMDEELRKKNRRLWIALVAFAILLTLLVILWKLSIYQKI*
JGIcombinedJ26739_10020202523300002245Forest SoilMDENLRKKNRRLLIAIIIFALALGAIVILWKLSIYQKI*
JGIcombinedJ26739_10029671733300002245Forest SoilMEEDYKKKNRRLLIAMIIFAVGFTVIIILWKLSIYQKF*
Ga0070763_1011004633300005610SoilMEQDFRKKNRRLLIAFIVFAVGFTLLIILWKLSIYQKT*
Ga0066903_10103518623300005764Tropical Forest SoilMDENLRKKNRRLLIAMMIFAIALCIIVILWKLSIYQKI*
Ga0070717_1113421723300006028Corn, Switchgrass And Miscanthus RhizosphereMEEKFRKKNRRMLVAILVFAIGFTVLIILWKLSIYQKS*
Ga0075363_10004072433300006048Populus EndosphereMDEKLRKKNRCLLIGMIIFALLLTLIVILWKLSIYQKI*
Ga0070765_10001134823300006176SoilMNEDFRKNNRRLLIAIIIFAVGLTLLVILWKLSIYQKT*
Ga0105247_1074396413300009101Switchgrass RhizosphereMEDNYRKKNRRLLVAILVFAIGFTVLIILWKLSIYQK*
Ga0116135_135704813300009665PeatlandMDEDFRKKNRRLAVAIVVFAVGLTVLIIVWKLSIYHKTLTP*
Ga0116215_132123123300009672Peatlands SoilMDEEFRKKNRRLLIAIIVFAVGFTLLIILWKLSIYQKT*
Ga0126382_1063021123300010047Tropical Forest SoilMDENLRKKNRRLLIAIVIFALTLCAVVILWKLSIYQKI*
Ga0126373_1011561833300010048Tropical Forest SoilMDDEFRKKNRRLLIAIILFAVGLTILVILWKLSIYQKT*
Ga0127503_1131751223300010154SoilMDENLRKKNRRLLIAIIIFALALCAIVILWKLSIYQKI*
Ga0074046_1002597143300010339Bog Forest SoilMDEDFRKKNRRLAIAIVVFAVGLTVLIILWKLSIYQKT*
Ga0074046_1087501723300010339Bog Forest SoilMDQDFRKKNRRLAIAIVVFAVGLTVLIILWKLSIYQKT*
Ga0126381_10009378833300010376Tropical Forest SoilMDENLRKKNRRLLIAMMIFAIALCIIVILWKLAIYQKI*
Ga0153924_106729023300012089Attine Ant Fungus GardensMDEDFRKKNRRMAIAIFVFAVGFTVLIILWKLSIYQKT*
Ga0137389_1175081823300012096Vadose Zone SoilVKDDEIRKNNRRLLIAIIIFALGLTLLVILWKLSIYQKT*
Ga0137363_1001917183300012202Vadose Zone SoilMDENLRKKNRRLLIAIVIFALTLCAIVILWKLSIYQKI*
Ga0137363_1062026923300012202Vadose Zone SoilMQEEYKKKNRRLFIAIVVFAVGFTLLIILWKLSIYQKV*
Ga0137362_1103668923300012205Vadose Zone SoilMNEEFRKNNRRLLIAIIIFAVGLTLLVILWKLSIYQKT*
Ga0137358_1050419023300012582Vadose Zone SoilMNEEFRKKNRRLLIAIIIFAVGLTLLIILWKLSIYQKT*
Ga0137398_1022103123300012683Vadose Zone SoilMEEDFKKKNRRLLIAMIIFAVGFTVLIILWKLSIYQKV*
Ga0164302_1086132623300012961SoilMDEKFRKSNRRLLIAIIVFALGLTLLVILWKLSIYQKP*
Ga0126369_1010718033300012971Tropical Forest SoilMDDEFRKKNRRLLIAIILFAIGLALLVILWKLSIYQKT*
Ga0126369_1198582423300012971Tropical Forest SoilILMDENLRKKNRRLLIAMMIFAIALCIIVILWKLSIYQKI*
Ga0181532_1002491043300014164BogMDEDFRRKNRRLAIAIVIFAVGLTVLIILWKLSIYQKT*
Ga0181523_1001585813300014165BogMDEDFRRKNRRLAIAIVVFAVGLTVLIILWKLSIYQKT*
Ga0182033_1187380823300016319SoilPIVMDDEFRKKNRRLLIAIILFAIGLTLLVILWKLSIYQKT
Ga0182032_1006260923300016357SoilMDENLRKKNRRLLIAIMIFAITLCIIVILWKLSIYQKI
Ga0187863_1053077123300018034PeatlandMDEDFRKKNRRLAVAIVVFAVGLTVLIIVWKLSIYHKTLTP
Ga0210407_1035366733300020579SoilRTIVMEQDFRKKNRRLLIAIIVFAVGFTLLIILWKLSIYQKT
Ga0210407_1087140223300020579SoilMQEEYKKKNRRLFIAIVVFAVGFTLLIILWKLSIYQKI
Ga0210403_1031010333300020580SoilMEQDFRKKNRRLLIAFIVFAVGFTLLIILWKLSIYQKT
Ga0210399_1075177423300020581SoilMDENLRKKNRRLLIAIVIFALTLCAIVILWKLSIYQKI
Ga0210395_1007927033300020582SoilMEEKFRKKNRRMLVAILVFAIGFTVLIILWKLSIYQKS
Ga0215015_1076279223300021046SoilMNEELKKNNRRLLIAIIIFAVGLTLLVILWKLSIYQKT
Ga0210405_1019746733300021171SoilMQEEYKKKNRRLFIAIVVFAIGFTLLIILWKLSIYQKV
Ga0210408_1137494723300021178SoilMQEEYKKKNRRLFIAIVIFAVGFTLLIILWKLSIYQKI
Ga0210396_1017364813300021180SoilEDKFRDKNRRMFVAIVVFAIGFTVLIILWKLSIYQKG
Ga0213872_1001436833300021361RhizosphereMDEELRKKNRRILIAIIAFAVGLTLLIILWKLSIYQKT
Ga0213872_1006139913300021361RhizosphereMDEDFRKKNRRLAIVLIVFAVGLTILIILWKLSIYQRT
Ga0213877_1000005563300021372Bulk SoilMDEDFRKKNRRLAIVLIAFAVGLTILIILWKLSIYQRP
Ga0213874_1000523233300021377Plant RootsMGKDLKRKNRRLLIALIVFAIGFTILIILWKLSIYQKF
Ga0213876_1027849423300021384Plant RootsMSLKDELHKKNLRFLAGMILFALLLALVVILWKLSIYQPA
Ga0210393_1008330333300021401SoilMENKFRNKNRRMFVAIVVFAIGFTVLIILWKLSIYQKG
Ga0210393_1017570943300021401SoilMEQDFRKKNRRLLIAIIVFAVGFTLLIILWKLSIYQKI
Ga0210393_1101122423300021401SoilMQEDYRKKNRRLLIVFIVFAVGFTVAIILWKLSIYQKF
Ga0210385_1013383633300021402SoilMEDKFRDKNRRMFVAIVVFAIGFTVLIILWKLSIYQKG
Ga0210387_1048857323300021405SoilMEEEFRKKNRRMLVAILVFAIGFTVLIILWKLSIYQKS
Ga0213879_1006157513300021439Bulk SoilRPRFCPFVMDEDFRRKNRRLVIVLVAFAVGLTILIILWKLSIYQRT
Ga0210410_1021890433300021479SoilMEQDFRKKNRRLLIAIIVFAVGFTLLIILWKLSIYQKT
Ga0210410_1047471233300021479SoilMQEEYKKKNRRLFIAIVVFAVGFTLLIILWKLSIYQKF
Ga0210409_1010749233300021559SoilMNEDFRKNNRRLLIAIIIFAVGLTLLVILWKLSIYQKT
Ga0126371_1035558723300021560Tropical Forest SoilMDENLRKKNRRLLIAMMIFAIALCIIVILWKLSIYQKI
Ga0126371_1046131533300021560Tropical Forest SoilMDENLRKKNRRLLIAIVIFALALCAIVILWKLSIYQKI
Ga0242658_114457113300022530SoilPIVMEEKFRKKNRRMLVAILVFAIGFTVLIILWKLSIYQKS
Ga0212123_1001941033300022557Iron-Sulfur Acid SpringMNEEFRKNNRRLLIAIIIFAVGLTLLVILWKLSIYQKT
Ga0228598_110793223300024227RhizosphereMDEDFRKKNRRMAIAIVVFAVGFTVLIILWKLSIYHKILTP
Ga0207684_1001715823300025910Corn, Switchgrass And Miscanthus RhizosphereMDEELRRKNRRLWIALVVFAILLTLLVILWKLSIYQKF
Ga0207646_1008485333300025922Corn, Switchgrass And Miscanthus RhizosphereMDENLRKKNRRLLIAIVIFALALCTIVILWKLSIYQKI
Ga0209648_1071824213300026551Grasslands SoilIVMNEKLRKNNRRLLIAIIIFAVGLTLLVILWKLSIYQKT
Ga0179587_1029498523300026557Vadose Zone SoilMQEEYKKKNRRLFIAIVIFAIGFTVLIILWKLSIYQKI
Ga0207762_103085813300027063Tropical Forest SoilNEEFRKKNRRLLIAIIIFAVGLTLLVILWKLSIYQKT
Ga0208603_105450323300027109Forest SoilIVMNEDFRKNNRRLLIAIIIFAVGLTLLVILWKLSIYQKT
Ga0209625_111271723300027635Forest SoilMEEEVRKKNRRLLIAIVVFAIGFTVLIILWKLSIYQKT
Ga0209217_111098323300027651Forest SoilVRPIIMEEEFRRKNRRLLMALIVFAVGFTVLIILWKLSIYQKP
Ga0209217_116700723300027651Forest SoilENLRKKNRRLLIAIIIFALALGAIVILWKLSIYQKI
Ga0207826_104727323300027680Tropical Forest SoilMNEEFRKKNRRLLIAIIIFAVGLTLLVILWKLSIYQKT
Ga0209328_1001967333300027727Forest SoilMDEELRKKNRRLWIALVAFAILLTLLVILWKLSIYQKI
Ga0209328_1003928423300027727Forest SoilMDENLRKKNRRLLIAIIIFALALGAIVILWKLSIYQKI
Ga0208989_1011045223300027738Forest SoilMIDEELRKKNRRFLIVMIIFALCLTAAVIVWKLSIYQVPH
Ga0208989_1019805613300027738Forest SoilMIDEELRKKNRRLLIAIIVFALLLTTAVIVWKLSIYQVPQK
Ga0209656_1000635653300027812Bog Forest SoilMDQDFRKKNRRLAIAIVVFAVGLTVLIILWKLSIYQKT
Ga0209656_1001502343300027812Bog Forest SoilMDEDFRKKNRRLAIAIVVFAVGLTVLIILWKLSIYQKT
Ga0209039_10002094163300027825Bog Forest SoilMKEELRKNNRRLLIAIIIFAVGLTLLVILWKLSIYQKT
Ga0209006_1011401833300027908Forest SoilMEEERRKKNRRMVIALLIFAILFTLLIILWKLSIYQKT
Ga0209006_1028224523300027908Forest SoilMEENYRKKNRRMLIAILVFVIGFTILIILWKLSIYQKT
Ga0209526_1009861433300028047Forest SoilMEEDYKKKNRRLLIAMIIFAVGFTVIIILWKLSIYQKV
Ga0209526_1060211523300028047Forest SoilLYEDMIDEELRKKNRRFLIVMIIFALCLTAAVILWKLSIYQVPH
Ga0302225_1027533023300028780PalsaMQEEYRKKNRRLFIAIIVFAIGFTALIILWKLSIYQKI
Ga0302222_1032232023300028798PalsaRFRPIVMQEEYRKKNRRLFIAIIVFAIGFTALIILWKLSIYQKI
Ga0308309_1004622213300028906SoilCPIVMNEDFRKNNRRLLIAIIIFAVGLTLLVILWKLSIYQKT
Ga0311338_1108014323300030007PalsaMQEEYRKKNRRLLIVFIVFAVGFTVAIILWKLSIYQKI
Ga0311354_1082763723300030618PalsaMQEEYRKKNRRLLIVFIVFAVGFTVAIILWKLSIYQKF
Ga0265460_1277956923300030740SoilMEEERRKKNRRMVIALLIFALGFTILIILWKLSIYQ
Ga0170824_12259873823300031231Forest SoilMEEKFRKKNRRMLVAILVFAIGFTVLIILWKLSIYQRS
Ga0318568_1096973823300031819SoilMDENLRKKNRRLLIAIMIFAITLCIIVILWKLSIYQKF
Ga0307479_1098002023300031962Hardwood Forest SoilMDEEYRKKNRRLLIAIIVFAVVFTLLIILWKLSIYQKT
Ga0311301_1005066153300032160Peatlands SoilMDEEFRKKNRRLLIAIIVFAVGFTLLIILWKLSIYQKT
Ga0307470_1183927223300032174Hardwood Forest SoilMQEEYKKKNRRLFIAIVVFAIGFTVLIILWKLSIYQKI
Ga0306920_10383419123300032261SoilMDENLRKKNRRLLIAIMIFAIALCIIVILWKLSIYQKI
Ga0335070_1028190533300032829SoilMDKELRKKNRYLLIGMIIFALLLTLIVILWKLSIYQKV
Ga0335076_1008177643300032955SoilMDEDFRKKNRRLAIVLIAFAVALTILIILWKLSIYQKT
Ga0310914_1160162513300033289SoilVMDEELRRKNRRLWIALVTFAILLTLLVILWKLSIYQKF


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