Metagenome / Metatranscriptome Family F101576

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F101576
Family Type	Metagenome / Metatranscriptome
Number of Sequences	102
Average Sequence Length	78 residues
Representative Sequence	MLRVGDSSDVQDVNTFFSSESGIFNAVGPEGEDMIVMCPPGEPWFVRKSNYKPEADSPDQSWHVTKLASWAVSRKKC
Number of Associated Samples	80
Number of Associated Scaffolds	102

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	63.73 %
% of genes near scaffold ends (potentially truncated)	36.27 %
% of genes from short scaffolds (< 2000 bps)	76.47 %
Associated GOLD sequencing projects	75
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.37

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Bacteria (100.000 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (31.372 % of family members)
Environment Ontology (ENVO)	Unclassified (44.118 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (79.412 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 5.71% β-sheet: 23.81% Coil/Unstructured: 70.48%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.37
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.37
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 102 Family Scaffolds
PF08281	Sigma70_r4_2	24.51
PF00072	Response_reg	21.57
PF13727	CoA_binding_3	0.98
PF01061	ABC2_membrane	0.98
PF00535	Glycos_transf_2	0.98
PF00196	GerE	0.98
PF00534	Glycos_transf_1	0.98
PF13751	DDE_Tnp_1_6	0.98
PF13439	Glyco_transf_4	0.98
PF02896	PEP-utilizers_C	0.98
PF13425	O-antigen_lig	0.98
PF12732	YtxH	0.98
PF04542	Sigma70_r2	0.98

COG ID	Name	Functional Category	% Frequency in 102 Family Scaffolds
COG0568	DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)	Transcription [K]	0.98
COG1191	DNA-directed RNA polymerase specialized sigma subunit	Transcription [K]	0.98
COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	Transcription [K]	0.98
COG4941	Predicted RNA polymerase sigma factor, contains C-terminal TPR domain	Transcription [K]	0.98

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	100.00 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	85.29 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.98 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	80.39 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	4.90 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.98 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	80.39 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	4.90 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.98 %
Unclassified	root	N/A	0.00 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	80.39 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	4.90 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.98 %
Unclassified	root	N/A	0.00 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001593\|JGI12635J15846_10356897	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	894	Open in IMG/M
3300002245\|JGIcombinedJ26739_100000477	All Organisms → cellular organisms → Bacteria	22177	Open in IMG/M
3300004099\|Ga0058900_1024124	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1145	Open in IMG/M
3300004100\|Ga0058904_1030616	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	742	Open in IMG/M
3300004103\|Ga0058903_1016111	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1177	Open in IMG/M
3300004120\|Ga0058901_1520011	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	553	Open in IMG/M
3300004139\|Ga0058897_10029913	All Organisms → cellular organisms → Bacteria	863	Open in IMG/M
3300004139\|Ga0058897_10067323	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1053	Open in IMG/M
3300004631\|Ga0058899_10183234	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1282	Open in IMG/M
3300005167\|Ga0066672_10024658	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3205	Open in IMG/M
3300005174\|Ga0066680_10001055	All Organisms → cellular organisms → Bacteria	10683	Open in IMG/M
3300005174\|Ga0066680_10125637	All Organisms → cellular organisms → Bacteria	1590	Open in IMG/M
3300005176\|Ga0066679_10525463	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	771	Open in IMG/M
3300005177\|Ga0066690_10138151	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1595	Open in IMG/M
3300005434\|Ga0070709_10349384	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1092	Open in IMG/M
3300005437\|Ga0070710_10850274	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	655	Open in IMG/M
3300005454\|Ga0066687_10569798	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	672	Open in IMG/M
3300005529\|Ga0070741_10000876	All Organisms → cellular organisms → Bacteria	100014	Open in IMG/M
3300005537\|Ga0070730_10200673	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1331	Open in IMG/M
3300005538\|Ga0070731_10194663	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1346	Open in IMG/M
3300005541\|Ga0070733_10339617	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	995	Open in IMG/M
3300005554\|Ga0066661_10251208	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1094	Open in IMG/M
3300005568\|Ga0066703_10718254	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	574	Open in IMG/M
3300005569\|Ga0066705_10930629	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	516	Open in IMG/M
3300005602\|Ga0070762_10918281	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	597	Open in IMG/M
3300005610\|Ga0070763_10839014	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	544	Open in IMG/M
3300005921\|Ga0070766_10083414	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1865	Open in IMG/M
3300005921\|Ga0070766_10170835	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1343	Open in IMG/M
3300006176\|Ga0070765_100156804	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2036	Open in IMG/M
3300006755\|Ga0079222_10017057	All Organisms → cellular organisms → Bacteria	2816	Open in IMG/M
3300006755\|Ga0079222_10317264	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1030	Open in IMG/M
3300006806\|Ga0079220_10695058	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	746	Open in IMG/M
3300006806\|Ga0079220_11171194	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	631	Open in IMG/M
3300010048\|Ga0126373_11123598	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	852	Open in IMG/M
3300010048\|Ga0126373_12070618	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	631	Open in IMG/M
3300010376\|Ga0126381_101696742	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	912	Open in IMG/M
3300011120\|Ga0150983_10742568	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1393	Open in IMG/M
3300011120\|Ga0150983_11752178	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	728	Open in IMG/M
3300011120\|Ga0150983_13916777	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1105	Open in IMG/M
3300017927\|Ga0187824_10047463	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1320	Open in IMG/M
3300017993\|Ga0187823_10002958	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3827	Open in IMG/M
3300017994\|Ga0187822_10369197	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	522	Open in IMG/M
3300018468\|Ga0066662_10541757	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1073	Open in IMG/M
3300020579\|Ga0210407_10037811	All Organisms → cellular organisms → Bacteria	3591	Open in IMG/M
3300020579\|Ga0210407_10098410	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2221	Open in IMG/M
3300020579\|Ga0210407_10129279	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1936	Open in IMG/M
3300020579\|Ga0210407_10398071	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1077	Open in IMG/M
3300020579\|Ga0210407_10569749	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	883	Open in IMG/M
3300020580\|Ga0210403_10592410	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	896	Open in IMG/M
3300020582\|Ga0210395_11223905	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	551	Open in IMG/M
3300020583\|Ga0210401_10096221	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2781	Open in IMG/M
3300021046\|Ga0215015_10164845	All Organisms → cellular organisms → Bacteria → Proteobacteria	7369	Open in IMG/M
3300021168\|Ga0210406_10180781	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1757	Open in IMG/M
3300021171\|Ga0210405_10050746	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3283	Open in IMG/M
3300021171\|Ga0210405_10147291	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1863	Open in IMG/M
3300021171\|Ga0210405_10201296	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1579	Open in IMG/M
3300021178\|Ga0210408_10022954	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	4969	Open in IMG/M
3300021403\|Ga0210397_10406575	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1019	Open in IMG/M
3300021403\|Ga0210397_11397000	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	544	Open in IMG/M
3300021420\|Ga0210394_10000350	All Organisms → cellular organisms → Bacteria	103928	Open in IMG/M
3300021420\|Ga0210394_10083027	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2767	Open in IMG/M
3300021420\|Ga0210394_10129005	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2191	Open in IMG/M
3300021420\|Ga0210394_10548825	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1016	Open in IMG/M
3300021432\|Ga0210384_10058186	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3495	Open in IMG/M
3300021474\|Ga0210390_10694580	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	848	Open in IMG/M
3300021476\|Ga0187846_10046907	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1919	Open in IMG/M
3300021559\|Ga0210409_10049821	All Organisms → cellular organisms → Bacteria	3942	Open in IMG/M
3300022504\|Ga0242642_1005451	All Organisms → cellular organisms → Bacteria	1430	Open in IMG/M
3300022525\|Ga0242656_1094464	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	578	Open in IMG/M
3300022528\|Ga0242669_1075222	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	618	Open in IMG/M
3300022532\|Ga0242655_10143113	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	694	Open in IMG/M
3300022712\|Ga0242653_1113029	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	507	Open in IMG/M
3300022717\|Ga0242661_1017513	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1120	Open in IMG/M
3300022724\|Ga0242665_10042910	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1172	Open in IMG/M
3300026317\|Ga0209154_1103750	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1211	Open in IMG/M
3300026335\|Ga0209804_1035032	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2525	Open in IMG/M
3300027439\|Ga0209332_1049871	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	771	Open in IMG/M
3300027565\|Ga0209219_1071134	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	864	Open in IMG/M
3300027706\|Ga0209581_1003015	All Organisms → cellular organisms → Bacteria	15037	Open in IMG/M
3300027725\|Ga0209178_1001235	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	7993	Open in IMG/M
3300027867\|Ga0209167_10256473	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	940	Open in IMG/M
3300027889\|Ga0209380_10445279	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	758	Open in IMG/M
3300028047\|Ga0209526_10164743	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1548	Open in IMG/M
3300028047\|Ga0209526_10221869	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1302	Open in IMG/M
3300028047\|Ga0209526_10277065	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1141	Open in IMG/M
3300028906\|Ga0308309_11685569	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	538	Open in IMG/M
3300029636\|Ga0222749_10329980	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	795	Open in IMG/M
3300030730\|Ga0307482_1135058	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	707	Open in IMG/M
3300030937\|Ga0138302_1744968	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	521	Open in IMG/M
3300031022\|Ga0138301_1604762	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	800	Open in IMG/M
3300031128\|Ga0170823_13919095	All Organisms → cellular organisms → Bacteria	1453	Open in IMG/M
3300031590\|Ga0307483_1034245	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	544	Open in IMG/M
3300031715\|Ga0307476_10054318	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2738	Open in IMG/M
3300031720\|Ga0307469_10031788	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3075	Open in IMG/M
3300031720\|Ga0307469_10166443	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1675	Open in IMG/M
3300031753\|Ga0307477_10686084	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	686	Open in IMG/M
3300031754\|Ga0307475_10736213	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	785	Open in IMG/M
3300031962\|Ga0307479_10056538	All Organisms → cellular organisms → Bacteria	3779	Open in IMG/M
3300031962\|Ga0307479_11812851	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	562	Open in IMG/M
3300032174\|Ga0307470_10168709	All Organisms → cellular organisms → Bacteria	1362	Open in IMG/M
3300032180\|Ga0307471_102479443	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	656	Open in IMG/M
3300032756\|Ga0315742_13473669	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	509	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	97.06%
Aquatic	Environmental → Aquatic	2.94%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	96.08%
Freshwater	Environmental → Aquatic → Freshwater	2.94%
Cave	Environmental → Terrestrial → Cave	0.98%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	70.59%
Loam	Environmental → Terrestrial → Soil → Loam	25.49%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	2.94%
Unclassified	Environmental → Terrestrial → Cave → Unclassified	0.98%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	44.12%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	23.53%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	11.76%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	9.80%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	4.90%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	2.94%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	1.96%
Unclassified	Environmental → Terrestrial → Cave → Unclassified → Unclassified	0.98%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	31.37%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	16.67%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	10.78%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	10.78%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	6.86%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	5.88%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	4.90%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	2.94%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	2.94%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	1.96%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.98%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.98%
Biofilm	Environmental → Terrestrial → Cave → Unclassified → Unclassified → Biofilm	0.98%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001593	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300004099	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF236 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004100	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF244 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004103	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF242 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004120	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF238 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004139	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF230 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004631	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF234 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005167	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121	Environmental	Open in IMG/M
3300005174	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129	Environmental	Open in IMG/M
3300005176	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_128	Environmental	Open in IMG/M
3300005177	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_139	Environmental	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005454	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_136	Environmental	Open in IMG/M
3300005529	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen16_06102014_R1	Environmental	Open in IMG/M
3300005537	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1	Environmental	Open in IMG/M
3300005538	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1	Environmental	Open in IMG/M
3300005541	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1	Environmental	Open in IMG/M
3300005554	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110	Environmental	Open in IMG/M
3300005568	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_152	Environmental	Open in IMG/M
3300005569	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_154	Environmental	Open in IMG/M
3300005602	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2	Environmental	Open in IMG/M
3300005610	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3	Environmental	Open in IMG/M
3300005921	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006806	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300017927	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_4	Environmental	Open in IMG/M
3300017993	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_3	Environmental	Open in IMG/M
3300017994	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_2	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300020582	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021046	Soil microbial communities from Shale Hills CZO, Pennsylvania, United States - 90cm depth	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021403	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021474	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O	Environmental	Open in IMG/M
3300021476	Biofilm microbial communities from the roof of an iron ore cave, State of Minas Gerais, Brazil - TC_06 Biofilm (v2)	Environmental	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300022504	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-2-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022525	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-4-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022528	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022532	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-4-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022712	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-32-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022717	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-11-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022724	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-17-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300026317	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121 (SPAdes)	Environmental	Open in IMG/M
3300026335	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_139 (SPAdes)	Environmental	Open in IMG/M
3300027439	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM3_M1 (SPAdes)	Environmental	Open in IMG/M
3300027565	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_M1 (SPAdes)	Environmental	Open in IMG/M
3300027706	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen15_06102014_R2 (SPAdes)	Environmental	Open in IMG/M
3300027725	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200 (SPAdes)	Environmental	Open in IMG/M
3300027867	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027889	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6 (SPAdes)	Environmental	Open in IMG/M
3300028047	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300028906	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)	Environmental	Open in IMG/M
3300029636	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030730	Metatranscriptome of hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030937	Forest soil microbial communities from Spain - ITS-tags Site 9-Mixed-thinned forest site A4_MS_spring Metatranscriptome (Eukaryote Community Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300031022	Forest soil microbial communities from Spain - ITS-tags Site 9-Mixed-thinned forest site A3_MS_spring Metatranscriptome (Eukaryote Community Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300031128	Oak Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031590	Metatranscriptome of hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031715	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031753	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515	Environmental	Open in IMG/M
3300031754	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032756	Forest Soil Metatranscriptomics Site 2 Humus Litter Mineral Combined Assembly	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12635J15846_103568972	3300001593	Forest Soil	MLRVGDSSDVQDVNKFFSSESGIFNAVGPEGEDMIVMCPPGEQWFVRKSNYKPEADSPDQSWHVTKLASWAVSGKKC*
JGIcombinedJ26739_10000047715	3300002245	Forest Soil	MFCGSDKGGSNMLRVGDSSDVQDVNTFFSSESGIFNAVGPEGEDMIVMCPPGEPWFVRKSNYKPEADSPDQSWHVTKLASWAVSRKKC*
Ga0058900_10241242	3300004099	Forest Soil	NMLRVGDSSDVQDVNNFFANESGIFNAIGPEGEDMVVMCPPGEPWFVRKSNYKPEADSPDQSWHVTKLASWAVSKKKC*
Ga0058904_10306161	3300004100	Forest Soil	RVGDSSDVQDVNKFFSSESGIFNAVGPEGEDMIVMCPPGEKWFVRKSNYKPEADIPDQSWHVTKLASWAVSRKNC*
Ga0058903_10161111	3300004103	Forest Soil	VNKFFSSESGIFNAVGPEGEDMIVMCPPGEQWFVRKSNYKSEADAPDQSWHVTKLASWAVSRKNC*
Ga0058901_15200111	3300004120	Forest Soil	DKGGSNMLRVGDSSDVQDVNTLLSTESGIFNAVGPEGEDMIVMCPPGEPWFVRKSNYKPEADSPDQSWHVTKLASWAVSKKKC*
Ga0058897_100299133	3300004139	Forest Soil	MKKGGPNMLRVGDSSDVQDVNKFFSGESGIFNAVGPEGEDMIVMCPPGEQWFVRKSNYKPEADTPDQSWHVTKLASWAVSRKKC*
Ga0058897_100673233	3300004139	Forest Soil	TRNGGKQTMLRVGDSSEVKDVNNFFSNEVGIFSAVGPEGEDMIVMCPPGEPWFVRKSATKPEDDGSDQSWRVTKLASWVVSRKTC*
Ga0058899_101832341	3300004631	Forest Soil	KTMLRVGDSSEVKDVNHFFSNEVGIFNAVGPEGEDIIVMCPPGEPWFVRKSASKPEGNAPDQSWHVTKLATWAVSRKSC*
Ga0066672_100246585	3300005167	Soil	MLRVGDSSDVNDVNTFFSNEIGIFSAVGPEGEDMIVMCPPGQPWFVRKSNYRPEVDRPDQPWHVTKLASWAVSRKSC*
Ga0066680_100010551	3300005174	Soil	MLRVGDSSDVKDVNTFFSNDVGIFNAVGPEGEDLIVMCPPGQPWFVRKSTSRPETDGSDQSWHVTKLASWAVSRKSC*
Ga0066680_101256372	3300005174	Soil	MLRVGDSSDVKDVNGFFSNEIGIFSAVGPEGEDMIVMCPPGQPWFVRKSNYRPEVDRPDQSWHVTKLASWAVSRKSC*
Ga0066679_105254631	3300005176	Soil	MLRVGDSSEVKDVNTFFTNEVGIFSAVGPEGEDMIVMCPPGQPWFVRKSMYRPEGDGSEQSWHVTKLASWAVSRKTC*
Ga0066690_101381511	3300005177	Soil	TFFTNEVGIFSAVGPEGEDMIVMCPPGQPWFVRKSMYRPEGDGSEQSWHVTKLASWAVSRKTC*
Ga0070709_103493842	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	MLRVGDSSEVKDVNSFFSNEVGIFSAVGPEGEDMIVMCPPGQPWFVRKSNHRPQADTPDQSWHVTKLASWAVSTKAC*
Ga0070710_108502742	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	MLRVGDSSEVKDVNAFFSNEVGIFNAVAPTGEDMIVMCPPGQNWLVRKSTYRPEVEGLDESWRVTKLASWAVSRKGC*
Ga0066687_105697981	3300005454	Soil	MLRVGDSSEVKDVNAFFTNEVGIFSAVGPEGEDMIVMCPPGQPWFVRKSMHRPEGDGSEQSWHVTKLASWAVSRKTC*
Ga0070741_1000087656	3300005529	Surface Soil	MLRVGDSSDVKDVNAFFSNESGIFSAIGPEGEDMIVMCPPGKPWFVRKSDYRPESDAVDQSWHVTKLASWAVSRKES*
Ga0070730_102006731	3300005537	Surface Soil	MLRVGDSSDVQDVNKFFSSESGIFNAVGPEGEDMIVMCPPGEQWFVRKSNYKPEADTPDQSWHVTKLASWAVSRKKC*
Ga0070731_101946632	3300005538	Surface Soil	MLRVGDSSEVKDVNNFFSNEVGIFNAVGPEGEDMIVMCPPGEPWFVRKSASKPEGNGPDQSWHVTKLASWAVSRKSC*
Ga0070733_103396172	3300005541	Surface Soil	MLRVGDSSEVQELNTFFASESGIFSAVGPEGEDMVVMCPPGEPWFVRKSKYQPEADRPDQSWHVTKLASWAVSRKQC*
Ga0066661_102512083	3300005554	Soil	SAFVFPGEYIDRKETTMLRVGDSSDVNDVNTFFSNEIGIFSAVGPEGEDMIVMCPPGQPWFVRKSNYRPEVDRPDQPWHVTKLASWAVSRKSC*
Ga0066703_107182541	3300005568	Soil	MLRVGDSSEVKDVNAFFTNEVGIFSAVGPEGEDMIVMCPPGQPWFVRKSMYRPEGDGSEQSWHITKLASW
Ga0066705_109306291	3300005569	Soil	FFTNEVGIFSAVGPEGEDMIVMCPPGQPWFVRKSTYRPEGDGLEQSWHVTKLASWAVSRKTC*
Ga0070762_109182811	3300005602	Soil	MLRVGDSSDVQDVNTFFSSESGIFNAVGPEGEDMIVMCPPGEPWFVRKSNYKPEADSPDQSWHVTKLASWAVSRKKC*
Ga0070763_108390141	3300005610	Soil	AERAHIVYVFGGVTKRGSNMLRVGDSSDVQDVNKFFANESGIFNAVGPEGEDMIVMCPPGEQWFVRKSNYKPEADSPDQSWHVTKLASWAVSRKKC*
Ga0070766_100834141	3300005921	Soil	MLRVGDSSDVQDVNTFFSTESGIFNAVGPEGEDMIVMCPPGEPWFVRKSNYKPEADSPDQSWHVTKLASWAVSRKKC*
Ga0070766_101708353	3300005921	Soil	MLRVGDSSEVKDVNNFFSNEVGIFNAVGPEGEDMIVMCPPGEPWFVRKSASKPEGNGPDQSWHVTKLASWAVSRKS
Ga0070765_1001568042	3300006176	Soil	MLRVGDSSDVQDVNTFFSTESGIFNAVGPEGEDMIVMCPPGEPWFVRKSNYKPEVDSPDQSWHVTKLASWAVSRKKC*
Ga0079222_100170574	3300006755	Agricultural Soil	MAMLRVGDSSEVKDVNTFFSNEIGIFSAVGPEGEDMIVMCPPGQPWFVRKSTYRPEGDSPEQSWRVTKLASWAVSRKGC*
Ga0079222_103172642	3300006755	Agricultural Soil	MLRVGDSSDVKDVDKFFSNEIGIFSAVGPEGEDLVVMCPPGEPWFVRKSADRPEPDSPDQSWHVTKLASWAVSRKKC*
Ga0079220_106950581	3300006806	Agricultural Soil	MLRVGDSSEVKDVNTFFSNETGIFSAVGPEGEDMIVMCPPGQPWFVRKSTYRPETDTPDQSWHVTKLASWAVSRKNC*
Ga0079220_111711942	3300006806	Agricultural Soil	MAMLRVGDSSDVRDVNTFFSNEIGIFSAVGPEGEDMIVMCPPGQPWFVRKSTYRPEGDSPEQSWRVTKLASWAVSRKGC*
Ga0126373_111235982	3300010048	Tropical Forest Soil	MLRVGDSSEVKDVNAFFSQETGVFSAVSPEGEDMIVICPPGKPWFVRKSDYRPESDAADQSWHVTKLALGW*
Ga0126373_120706181	3300010048	Tropical Forest Soil	MLRVGDSSEVKDVNTFFSNEVGIFSAVGPEGEDMIVMCPPGQPWFVRKSTSRPEGDDSEQSWHVTKLASWAISRKSC*
Ga0126381_1016967421	3300010376	Tropical Forest Soil	MLRVGDSSEVKDVNAFFSQETGVFSAVSPEGEDMIVICPPGKPWFVRKSDYRPESDAADQPWRVTKLASWVVSRKES*
Ga0150983_107425682	3300011120	Forest Soil	ATTRNGGKQTMLRVGDSSEVKDVNNFFSNEVGIFSAVGPEGEDMIVMCPPGEPWFVRKSATKPEDDGSDQSWRVTKLASWVVSRKTC*
Ga0150983_117521781	3300011120	Forest Soil	QRRGEKIMLRVGDSSDVKDVNAFFSNEVGIFNAVAPTGEDLIVMCPPGQAWFVRKSTYRPEADGSDESWRVTKLASWAVSRKSC*
Ga0150983_139167771	3300011120	Forest Soil	KGKTKRGAKTMLRVGDSSEVKDVNHFFSNEVGIFNAVGPEGEDIIVMCPPGEPWFVRKSASKPEGNAPDQSWHVTKLATWAVSRKSC*
Ga0187824_100474631	3300017927	Freshwater Sediment	MLRVGDSSDVQDVNKFFSSESGIFNAVGPEGEDMIVMCPPGEQWFVRKSNYKPGADTPDQSWHVTKLASWAVSRKKC
Ga0187823_100029582	3300017993	Freshwater Sediment	MLRVGDSSDIKDVNTFFSSEIGIFSAVGPEGEDMIVMCPPGEPWFVRKSSHRSEEDQPDQPWHVTKLASWAVSRKQC
Ga0187822_103691971	3300017994	Freshwater Sediment	MLRVGDSSDVQDVNKFFSSESGIFNAVGPEGEDMIVMCPPGEQWFVRKSNYKPGADTPDQSWHVTKLASWAVSRKK
Ga0066662_105417571	3300018468	Grasslands Soil	MLRVGDSSDVKDVNTFFSNDVGIFNAVGPEGEDLIVMCPPGQPWFVRKSTSRPETDGSDQSWHVTKLASWAVSRKSC
Ga0210407_100378116	3300020579	Soil	MLRVGDSSDVQDVNKFFSSESGIFNAVGPEGEDMIVMCPPGEHWFVRKSNYKPEADTPDQSWHVTKLASWAISRKNC
Ga0210407_100984103	3300020579	Soil	MLRVGDSSDVKDVNTFFSRESGIFNAVGPEGEDMIVMCPPGEQWFVRKSNYKPEADSPDQSWHVTKLASWAVSKKKC
Ga0210407_101292793	3300020579	Soil	MLRVGDSSEVKDVNAFFSNEVGIFNAVAPTGEDLIVMCPPGQAWFVRKSTHRPEADGSDESWRVTKLASWAVSRKSC
Ga0210407_103980712	3300020579	Soil	MLRVGDSSDVQDVNKFFSGESGIFNAVGPEGEDMIVMCPPGEQWFVRKSNYKPEADTPDQSWHVTKLASWAVSRKKC
Ga0210407_105697493	3300020579	Soil	MLRVGDSSDVQDVNTFFSSESGIFNAVGPEGEDMIVMCPPGEPWFVRKSNYKPEADSPDQSWHVTKLASWVVSRKKC
Ga0210403_105924103	3300020580	Soil	MLRVGDSSDVQDVNTFFSSESGIFNAVGPEGEDMIVMCPPGEQWFVRKSNYKPEADSPDQSWHVTKLASWVVSRKKC
Ga0210395_112239051	3300020582	Soil	MLRVGDSSDVQDVNTFFSSESGIFNAVGPEGEDMIVMCPPGEPWFVRKSNYKPEADSPDQSWHVTKLASWVV
Ga0210401_100962215	3300020583	Soil	MLRVGDSSDVQDVNTFFSSESGIFNAVGPEGEDMIVMCPPGEPWFVRKSNYKPEADSPDQSWHVTKLASWAVSKKKC
Ga0215015_101648451	3300021046	Soil	MLRVGDSSDVKDVNTFFSNEIGIFNAVGPEGEELIVMCPPGQPWFVRKSTSRPETDGSDQSWHVTKLASWAVSRKSC
Ga0210406_101807814	3300021168	Soil	MLRVGDSSDVQDVNKFFSSESGIFNAVGPEGEDMIVMCPPGEHWFVRKSNYKPEADTPDQSWHVTKLASWAVSRKNC
Ga0210405_100507465	3300021171	Soil	MLRVGDSSEIKDVNTFFSSEVGIFSAVGPEGEDMIVMCPPGQPWFVRKSDYRPEDDRPDQSWHVTKLASWAVSRKNC
Ga0210405_101472913	3300021171	Soil	MLRVGDSSDVQDVNTFFSSESGIFNAVGPEGEDMIVMCPPGEPWFVRKSNYKPEADSPDQSWHVTKLASWAVSRKKC
Ga0210405_102012962	3300021171	Soil	MLRVGDSSEVKDVNNFFSNEVGIFSAVGPEGEDMIVMCPPGEPWFVRKSATKPEDDGSDQSWRVTKLASWVVSRKTC
Ga0210408_100229543	3300021178	Soil	MLRVGDSSEVKDVNNFFSNEVGIFSAVGPEGEDMIVMCPPGEPWFVRKSATKPEGDGSDQSWRVTKLASWVVSRKTC
Ga0210397_104065751	3300021403	Soil	MLRVGDSSDVQDVNKFFSSESGIVNAVGPEGEDMIVMCPPGEHWFVRKSNYKPEADTPDQSWHVTKLASWAISRKNC
Ga0210397_113970001	3300021403	Soil	DSSEVKDVNNFFSNEVGIFNAVGPEGEDMIVMCPPGEPWFVRKSASKPEGNGPDQSWHVTKLASWAVSRKSC
Ga0210394_1000035055	3300021420	Soil	MLRVGDSSDVQDVNKFFSSESGIFNAVGPEGEDMIVMCPPGEQWFVRKSNYKPEADTPDQSWHVTKLASWAVSRKKC
Ga0210394_100830272	3300021420	Soil	MLRVGDSSEVKDVNNFFSNEVGIFNAVGPEGEDMIVMCPPGEPWFVRKSASKPEGNGPDQSWHVTKLASWAVSRKSC
Ga0210394_101290053	3300021420	Soil	MLRVGDSSDVKDVNTFFSSESGIFNAVGPTGEDMIVMCPPGEQWFVRKSNYKPEADSPDQSWHVTKLASWAVSKKKC
Ga0210394_105488251	3300021420	Soil	SDVQDVNTFFSSESGIFNAVGPEGEDMIVMCPPGEPWFVRKSNYKPEADSPDQSWHVTKLASWAVSKKKC
Ga0210384_100581861	3300021432	Soil	MFCGSDKGGSNILRVGDSSDVQDVNTFFSSESGIFNAVGPEGEDMIVMCPPGEPWFVRKSNYKPEADSPDQSWHVTKLASWAVSRKKC
Ga0210390_106945802	3300021474	Soil	MLRVGDSSEVKDVNNFFSNEVGIFNAVGPEGEDMIVMCPPGEPWFVRKSASKPEGNAPDQSWHVTKLASWAVSRKSC
Ga0187846_100469072	3300021476	Biofilm	MLRVGDSSDVRDVNTFFSNEVGIFSAVGPEGEDMIVMCPPGQPWFVRKSTSRPESDSPEEAWHVTKLASWAISRKSC
Ga0210409_100498217	3300021559	Soil	MLRVGDSSEIKDVNTFFSSEVGIFSAVGPEGEDMIVLCPPGQPWFVRKSDYRPEDDRPDQSWHVTKLASWAVSRKNC
Ga0242642_10054513	3300022504	Soil	NMLRVGDSSDVQDVNKFFSSESGIFNAVGPEGEDMIVMCPPGEHWFVRKSNYKPEADTPDQSWHVTKLASWAISRKNC
Ga0242656_10944642	3300022525	Soil	GGHMLRVGDSSDVQDVNKFFSSESGIFNAVGPEGEDMIVMCPPGEQWFVRKSNYKPEADTPDQSWHVTKLASWAISRKNC
Ga0242669_10752222	3300022528	Soil	GGSNMLRVGDSSDVQDVNTFFSSESGIFNAVGPEGEDMIVMCPPGEPWFVRKSNYKPEADSPDQSWHVTKLASWAVSKKKC
Ga0242655_101431131	3300022532	Soil	NMLRVGDSSDVQDVNKFFSSESGIFNAVGPEGEDMIVMCPPGEHWFVRKSNYKPEADTPDQSWHVTKLASWAVSRKNC
Ga0242653_11130292	3300022712	Soil	MLRVGDSSDVQGVNKFFSSESGIFNAVGPEGEDMIVMCPPGEHWFVRKSNYKPEADTPDQSWHVTKLASWAISRKNC
Ga0242661_10175132	3300022717	Soil	NMLRVGDSSDVQDVNTFFSSESGIFNAVGPEGEDMIVMCPPGEPWFVRKSNYKPEADSPDQSWHVTKLASWAVSKKKVLMHP
Ga0242665_100429102	3300022724	Soil	LRVGDSSDVKDVNTFFSSESGIFNAVGPEGEDMIVMCPPGEPWFVRKSNYKPEADSPDQSWHVTKLASWAVSKKKC
Ga0209154_11037502	3300026317	Soil	MLRVGDSSDVNDVNTFFSNEIGIFSAVGPEGEDMIVMCPPGQPWFVRKSNYRPEVDRPDQPWHVTKLASWAVSRKSC
Ga0209804_10350321	3300026335	Soil	TMLRVGDSSDVNDVNTFFSNEIGIFSAVGPEGEDMIVMCPPGQPWFVRKSNYGPEVDRPDQPWHVIKLASWAVSRKNC
Ga0209332_10498712	3300027439	Forest Soil	MSCPNEERGANMLRVGDSSDVQDVNKFFSSESGIFNAVGPEGEDMIVMCPPGEQWFVRKSNYKPEADSPDQSWHVTKLASWAVSGKKC
Ga0209219_10711341	3300027565	Forest Soil	MLRVGDSSDVQDVNKFFSSESGIFNAVGPEGEDMIVMCPPGEQWFVRKSNYKPEADSPDQSWHVTKLASWAVSGKKC
Ga0209581_10030154	3300027706	Surface Soil	MLRVGDSSDVKDVNAFFSNESGIFSAIGPEGEDMIVMCPPGKPWFVRKSDYRPESDAVDQSWHVTKLASWAVSRKES
Ga0209178_10012354	3300027725	Agricultural Soil	MLRVGDSSDVKDVDKFFSNEIGIFSAVGPEGEDLVVMCPPGEPWFVRKSADRPEPDSPDQSWHVTKLASWAVSRKKC
Ga0209167_102564731	3300027867	Surface Soil	MLRVGDSSEVQELNTFFASESGIFSAVGPEGEDMVVMCPPGEPWFVRKSKYQPEADRPDQSWHVTKLASWAVSRKQC
Ga0209380_104452792	3300027889	Soil	MLRVGDSSDVQDVNTFFSTESGIFNAVGPEGEDMIVMCPPGEPWFVRKSNYKPEADSPDQSWHVTKLASWAVSRKKC
Ga0209526_101647432	3300028047	Forest Soil	MLRVGDSSDVQDVNTFFSSESGIFNAVGPEGEDMIVMCPPGEPWFVRKSNYKPEVDSPDQSWHVTKLASWAVSRKKC
Ga0209526_102218692	3300028047	Forest Soil	MLRVGDSSEVKDVNTFFSNETGIFSAVGPEGEDMIVMCPPEKPWFVRKSTYRPEADRPDQSWHVTKLASWAVSRKSC
Ga0209526_102770653	3300028047	Forest Soil	MLRVGDSSDVQDVNKFFSSESGIFNAVGPEGEDMIVMCPPGEQWFVRKSNYKREADTPDQSWHVTKLASWAVSRKKC
Ga0308309_116855691	3300028906	Soil	MLRVGDSSDVQDVNTFFSTESGIFNAVGPEGEDMIVMCPPGEPWFVRKSNYKPEVDSPDQSWHVTKLASWAVSRKKC
Ga0222749_103299802	3300029636	Soil	LPSTDKGLEPKVPKMSCPNEERGPNMLRVGDSSDVQDVNKFFSSESGIFNAVGPEGEDMIVMCPPGEHWFVRKSNYKPEADTPDQSWHVTKLASWAISRKNC
Ga0307482_11350581	3300030730	Hardwood Forest Soil	KGKTKRGCKTMLRVGDSSEVKDVNNFFSNEVGIFNAVGPEGEDMIVMCPPGEPWFVRKSASKPEGNGPDQSWHVTKLASWAVSRKSC
Ga0138302_17449681	3300030937	Soil	GSNMLRVGDSSDVQDVNKFFSSESGIFNAVGPEGEDMIVMCPPGEHWFVRKSNYKPEADTPDQSWHVTKLASWAISRKNC
Ga0138301_16047622	3300031022	Soil	RVGDSSEVKDVNAFFSNEVGIFNAVAPTGEDLIVMCPPGQAWFVRKSTHRPEADGSHESWRVTKLASWAVSRKSC
Ga0170823_139190953	3300031128	Forest Soil	PNEERGPNMLRVGDSSDVQDVNKFFSSESGIFNAVGPEGEDMIVMCPPGEHWFVRKSNYKPEADTPDQSWHVTKLASWAISRKNC
Ga0307483_10342451	3300031590	Hardwood Forest Soil	GSNMLRVGDSSDVQDVNTFFSSESGIFNAVGPEGEDMIVMCPPGEPWFVRKSNYKPEADSPDQSWHVTKLASWAVSKKKVLMHQ
Ga0307476_100543183	3300031715	Hardwood Forest Soil	MLRVGDSSDVQDVNTFFSSESGIFNAVGPEGEDMIVMCPPGEPWFVRKSNYKPETDSPDQSWHVTKLASWAVSKKKC
Ga0307469_100317881	3300031720	Hardwood Forest Soil	MLRVGDSSEVKDVNNFFSNEVGIFSAVGPEGEDMIVMCPPGEAWFVRKSANKPEGDGSDQPWHVTKLASWVVSRKSC
Ga0307469_101664432	3300031720	Hardwood Forest Soil	MLRVGDSSDVQDVNTFFSSESGIFNAVGPEGEDMIVMCPPGEPWFVRKSNYKPEADSPDQSWHVTKLASWAVSRKNC
Ga0307477_106860841	3300031753	Hardwood Forest Soil	MLRVGDSSDVRDVNTFFSNEIGIFSAVGPEGEDMIVMCPPGQPWFVRKSTYRREGDAPEQSWHVTKLASWAVSRRGC
Ga0307475_107362131	3300031754	Hardwood Forest Soil	LRVGDSSDVQDVNTFFSSESGIFNAVGPEGEDMIVMCPPGEQWFVRKSNYKPEADSPDQSWHVTKLASWAVSRKKC
Ga0307479_100565381	3300031962	Hardwood Forest Soil	MLRVGDSSEIKDVNTFFSSEVGIFSAVGPEGEDMIVMCPPGQPWFVRKSDYRPEDDRPDQSWHV
Ga0307479_118128511	3300031962	Hardwood Forest Soil	SEVKDVNNFFSNEVGIFSAVGPEGEDMIVMCPPGEPWFVRKSATKPEADGSDQSWRVTKLASWVVSRKTC
Ga0307470_101687091	3300032174	Hardwood Forest Soil	FFSSESGIFNAVGPEGEDMIVMCPPGEHWFVRKSNYKPEADTPDQSWHVTKLASWAISRKNC
Ga0307471_1024794432	3300032180	Hardwood Forest Soil	MLRVGDSSDVQDVNKFFSSESGIFNAVGPEGEDMIVMCPPGEQWFVRKSNYKPEADTPDQSWHVTKLASWAISRKNC
Ga0315742_134736691	3300032756	Forest Soil	VQDVNKFFSSESGIFNAVGPEGEDMIVMCPPGEQWFVRKSNYKPEADSPDQSWHVTKLASWAVSGKKC

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F101576

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences