Metagenome / Metatranscriptome Family F101570

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F101570
Family Type	Metagenome / Metatranscriptome
Number of Sequences	102
Average Sequence Length	43 residues
Representative Sequence	MYTSSLELRAWCEQNRNRLYIPEWLLKEWGITVDLNFSAAA
Number of Associated Samples	80
Number of Associated Scaffolds	102

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	3.92 %
% of genes near scaffold ends (potentially truncated)	86.27 %
% of genes from short scaffolds (< 2000 bps)	90.20 %
Associated GOLD sequencing projects	74
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.37

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (73.529 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (39.216 % of family members)
Environment Ontology (ENVO)	Unclassified (40.196 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (47.059 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 26.09% β-sheet: 0.00% Coil/Unstructured: 73.91%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.37
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.37
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 102 Family Scaffolds
PF09723	Zn-ribbon_8	5.88
PF00903	Glyoxalase	2.94
PF12728	HTH_17	2.94
PF11154	DUF2934	1.96
PF12681	Glyoxalase_2	1.96
PF00069	Pkinase	1.96
PF14534	DUF4440	0.98
PF01810	LysE	0.98
PF07676	PD40	0.98
PF06723	MreB_Mbl	0.98
PF12762	DDE_Tnp_IS1595	0.98
PF12838	Fer4_7	0.98
PF01548	DEDD_Tnp_IS110	0.98
PF04116	FA_hydroxylase	0.98
PF13538	UvrD_C_2	0.98
PF07366	SnoaL	0.98
PF09587	PGA_cap	0.98
PF03352	Adenine_glyco	0.98
PF12849	PBP_like_2	0.98
PF10711	DUF2513	0.98
PF10503	Esterase_PHB	0.98
PF09361	Phasin_2	0.98
PF00589	Phage_integrase	0.98
PF01740	STAS	0.98
PF02371	Transposase_20	0.98
PF07238	PilZ	0.98
PF00535	Glycos_transf_2	0.98
PF13548	DUF4126	0.98
PF01925	TauE	0.98

COG ID	Name	Functional Category	% Frequency in 102 Family Scaffolds
COG0515	Serine/threonine protein kinase	Signal transduction mechanisms [T]	7.84
COG3547	Transposase	Mobilome: prophages, transposons [X]	1.96
COG0730	Sulfite exporter TauE/SafE/YfcA and related permeases, UPF0721 family	Inorganic ion transport and metabolism [P]	0.98
COG1077	Cell shape-determining ATPase MreB, actin-like superfamily	Cell cycle control, cell division, chromosome partitioning [D]	0.98
COG2818	3-methyladenine DNA glycosylase Tag	Replication, recombination and repair [L]	0.98
COG3000	Sterol desaturase/sphingolipid hydroxylase, fatty acid hydroxylase superfamily	Lipid transport and metabolism [I]	0.98

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	73.53 %
Unclassified	root	N/A	26.47 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	73.53 %
Unclassified	root	N/A	26.47 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	73.53 %
Unclassified	root	N/A	26.47 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	59.80 %
Unclassified	root	N/A	26.47 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.96 %

Name	Rank	Taxonomy	Distribution
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	29.41 %
Unclassified	root	N/A	26.47 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	3.92 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	0.98 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.98 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	29.41 %
Unclassified	root	N/A	26.47 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	3.92 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.98 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.98 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	29.41 %
Unclassified	root	N/A	26.47 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	3.92 %
Myxococcales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	0.98 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.98 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	29.41 %
Unclassified	root	N/A	26.47 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	3.92 %
Cystobacterineae	suborder	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae	0.98 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.98 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	29.41 %
Unclassified	root	N/A	26.47 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	3.92 %
Anaeromyxobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Anaeromyxobacteraceae	0.98 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.98 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	29.41 %
Unclassified	root	N/A	26.47 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	3.92 %
Anaeromyxobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Anaeromyxobacteraceae → Anaeromyxobacter	0.98 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.98 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	29.41 %
Unclassified	root	N/A	26.47 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	3.92 %
unclassified Anaeromyxobacter	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Anaeromyxobacteraceae → Anaeromyxobacter → unclassified Anaeromyxobacter	0.98 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.98 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	29.41 %
Unclassified	root	N/A	26.47 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	3.92 %
Anaeromyxobacter sp. SG22	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Anaeromyxobacteraceae → Anaeromyxobacter → unclassified Anaeromyxobacter → Anaeromyxobacter sp. SG22	0.98 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.98 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000567\|JGI12270J11330_10025840	All Organisms → cellular organisms → Bacteria	3530	Open in IMG/M
3300002245\|JGIcombinedJ26739_101620044	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	545	Open in IMG/M
3300004080\|Ga0062385_10654679	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	671	Open in IMG/M
3300004152\|Ga0062386_101209191	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	628	Open in IMG/M
3300004156\|Ga0062589_100584027	All Organisms → cellular organisms → Bacteria	965	Open in IMG/M
3300004477\|Ga0068971_1173679	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	550	Open in IMG/M
3300005171\|Ga0066677_10803716	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	520	Open in IMG/M
3300005176\|Ga0066679_10012534	All Organisms → cellular organisms → Bacteria	4261	Open in IMG/M
3300005178\|Ga0066688_10529355	Not Available	758	Open in IMG/M
3300005187\|Ga0066675_10915967	All Organisms → cellular organisms → Bacteria	662	Open in IMG/M
3300005435\|Ga0070714_101778788	Not Available	602	Open in IMG/M
3300005450\|Ga0066682_10950774	Not Available	509	Open in IMG/M
3300005537\|Ga0070730_10266283	All Organisms → cellular organisms → Bacteria → Acidobacteria	1128	Open in IMG/M
3300005537\|Ga0070730_10335327	All Organisms → cellular organisms → Bacteria → Acidobacteria	986	Open in IMG/M
3300005542\|Ga0070732_10006629	All Organisms → cellular organisms → Bacteria → Acidobacteria	6303	Open in IMG/M
3300005575\|Ga0066702_10565873	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	686	Open in IMG/M
3300005577\|Ga0068857_101628307	Not Available	630	Open in IMG/M
3300005586\|Ga0066691_10793857	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	558	Open in IMG/M
3300006028\|Ga0070717_10412310	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1214	Open in IMG/M
3300006034\|Ga0066656_10527163	All Organisms → cellular organisms → Bacteria → Acidobacteria	769	Open in IMG/M
3300006052\|Ga0075029_100479552	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	819	Open in IMG/M
3300006059\|Ga0075017_100094409	All Organisms → cellular organisms → Bacteria	2076	Open in IMG/M
3300006086\|Ga0075019_10760629	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	615	Open in IMG/M
3300006176\|Ga0070765_100295677	Not Available	1495	Open in IMG/M
3300006176\|Ga0070765_100960387	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	808	Open in IMG/M
3300006954\|Ga0079219_12124430	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	538	Open in IMG/M
3300009038\|Ga0099829_10792521	Not Available	787	Open in IMG/M
3300009038\|Ga0099829_10838094	All Organisms → cellular organisms → Bacteria → Acidobacteria	763	Open in IMG/M
3300009038\|Ga0099829_11200753	All Organisms → cellular organisms → Bacteria → Acidobacteria	628	Open in IMG/M
3300009038\|Ga0099829_11326528	Not Available	595	Open in IMG/M
3300009088\|Ga0099830_10810228	All Organisms → cellular organisms → Bacteria → Acidobacteria	773	Open in IMG/M
3300009088\|Ga0099830_11484256	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	564	Open in IMG/M
3300009089\|Ga0099828_10740673	All Organisms → cellular organisms → Bacteria	882	Open in IMG/M
3300009522\|Ga0116218_1410451	Not Available	604	Open in IMG/M
3300010048\|Ga0126373_10031435	All Organisms → cellular organisms → Bacteria	4596	Open in IMG/M
3300010159\|Ga0099796_10178334	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	851	Open in IMG/M
3300010379\|Ga0136449_100690805	Not Available	1714	Open in IMG/M
3300010397\|Ga0134124_11737961	Not Available	657	Open in IMG/M
3300011269\|Ga0137392_10299199	All Organisms → cellular organisms → Bacteria → Acidobacteria	1330	Open in IMG/M
3300011269\|Ga0137392_11445727	Not Available	546	Open in IMG/M
3300011270\|Ga0137391_10213974	All Organisms → cellular organisms → Bacteria	1675	Open in IMG/M
3300011270\|Ga0137391_11432403	All Organisms → cellular organisms → Bacteria → Acidobacteria	536	Open in IMG/M
3300011271\|Ga0137393_10988417	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	717	Open in IMG/M
3300012096\|Ga0137389_11506080	Not Available	569	Open in IMG/M
3300012203\|Ga0137399_10244928	All Organisms → cellular organisms → Bacteria → Acidobacteria	1468	Open in IMG/M
3300012206\|Ga0137380_10059750	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	3488	Open in IMG/M
3300012206\|Ga0137380_11395979	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	585	Open in IMG/M
3300012210\|Ga0137378_10213199	All Organisms → cellular organisms → Bacteria	1798	Open in IMG/M
3300012210\|Ga0137378_10247720	Not Available	1658	Open in IMG/M
3300012210\|Ga0137378_10765202	All Organisms → cellular organisms → Bacteria	878	Open in IMG/M
3300012349\|Ga0137387_10537042	Not Available	849	Open in IMG/M
3300012351\|Ga0137386_10837245	All Organisms → cellular organisms → Bacteria → Acidobacteria	661	Open in IMG/M
3300012351\|Ga0137386_11256700	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	515	Open in IMG/M
3300012357\|Ga0137384_10458740	Not Available	1049	Open in IMG/M
3300012357\|Ga0137384_11395552	Not Available	549	Open in IMG/M
3300012363\|Ga0137390_10310941	All Organisms → cellular organisms → Bacteria → Acidobacteria	1557	Open in IMG/M
3300012363\|Ga0137390_10318158	All Organisms → cellular organisms → Bacteria → Acidobacteria	1538	Open in IMG/M
3300012363\|Ga0137390_10438565	All Organisms → cellular organisms → Bacteria → Acidobacteria	1283	Open in IMG/M
3300012683\|Ga0137398_10046575	All Organisms → cellular organisms → Bacteria → Acidobacteria	2549	Open in IMG/M
3300012917\|Ga0137395_10871158	Not Available	652	Open in IMG/M
3300012917\|Ga0137395_11138966	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	550	Open in IMG/M
3300012918\|Ga0137396_10371496	Not Available	1059	Open in IMG/M
3300012918\|Ga0137396_11123467	Not Available	560	Open in IMG/M
3300012929\|Ga0137404_11637699	Not Available	597	Open in IMG/M
3300015241\|Ga0137418_10584202	All Organisms → cellular organisms → Bacteria → Acidobacteria	879	Open in IMG/M
3300015264\|Ga0137403_10006016	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	13942	Open in IMG/M
3300016422\|Ga0182039_11724099	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	573	Open in IMG/M
3300016702\|Ga0181511_1394591	All Organisms → cellular organisms → Bacteria → Acidobacteria	535	Open in IMG/M
3300017822\|Ga0187802_10013428	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2700	Open in IMG/M
3300017823\|Ga0187818_10340295	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	662	Open in IMG/M
3300017930\|Ga0187825_10039465	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1594	Open in IMG/M
3300017933\|Ga0187801_10041889	All Organisms → cellular organisms → Bacteria → Acidobacteria	1643	Open in IMG/M
3300017943\|Ga0187819_10795380	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	531	Open in IMG/M
3300017946\|Ga0187879_10504550	All Organisms → cellular organisms → Bacteria → Acidobacteria	671	Open in IMG/M
3300017994\|Ga0187822_10194411	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	674	Open in IMG/M
3300018006\|Ga0187804_10119751	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1093	Open in IMG/M
3300018009\|Ga0187884_10093785	All Organisms → cellular organisms → Bacteria → Acidobacteria	1317	Open in IMG/M
3300018012\|Ga0187810_10123067	Not Available	1030	Open in IMG/M
3300018012\|Ga0187810_10466508	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	536	Open in IMG/M
3300025448\|Ga0208037_1005148	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	4424	Open in IMG/M
3300025910\|Ga0207684_10638713	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	907	Open in IMG/M
3300025922\|Ga0207646_10582277	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Anaeromyxobacteraceae → Anaeromyxobacter → unclassified Anaeromyxobacter → Anaeromyxobacter sp. SG22	1005	Open in IMG/M
3300025922\|Ga0207646_11128854	Not Available	689	Open in IMG/M
3300025922\|Ga0207646_11427692	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	601	Open in IMG/M
3300025928\|Ga0207700_11646985	Not Available	567	Open in IMG/M
3300026474\|Ga0247846_1020684	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1171	Open in IMG/M
3300026551\|Ga0209648_10268938	All Organisms → cellular organisms → Bacteria → Acidobacteria	1248	Open in IMG/M
3300026551\|Ga0209648_10368002	All Organisms → cellular organisms → Bacteria	974	Open in IMG/M
3300027439\|Ga0209332_1073778	Not Available	618	Open in IMG/M
3300027497\|Ga0208199_1124894	Not Available	526	Open in IMG/M
3300027857\|Ga0209166_10187819	All Organisms → cellular organisms → Bacteria → Acidobacteria	1115	Open in IMG/M
3300027862\|Ga0209701_10346447	All Organisms → cellular organisms → Bacteria → Acidobacteria	842	Open in IMG/M
3300027875\|Ga0209283_10566833	Not Available	723	Open in IMG/M
3300027875\|Ga0209283_10886044	All Organisms → cellular organisms → Bacteria → Acidobacteria	541	Open in IMG/M
3300028047\|Ga0209526_10313783	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1058	Open in IMG/M
3300028536\|Ga0137415_10927117	All Organisms → cellular organisms → Bacteria → Acidobacteria	681	Open in IMG/M
3300028906\|Ga0308309_10787483	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	826	Open in IMG/M
3300029882\|Ga0311368_10433482	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	960	Open in IMG/M
3300031938\|Ga0308175_102088878	All Organisms → cellular organisms → Bacteria → Acidobacteria	635	Open in IMG/M
3300032180\|Ga0307471_102762717	All Organisms → cellular organisms → Bacteria	623	Open in IMG/M
3300032205\|Ga0307472_102057742	All Organisms → cellular organisms → Bacteria → Acidobacteria	573	Open in IMG/M
3300032828\|Ga0335080_12088584	Not Available	547	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	99.02%
Host-Associated	Host-Associated	0.98%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	81.37%
Aquatic	Environmental → Aquatic	17.65%
Plants	Host-Associated → Plants	0.98%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	79.41%
Freshwater	Environmental → Aquatic → Freshwater	14.71%
Sediment	Environmental → Aquatic → Sediment	2.94%
Peat	Environmental → Terrestrial → Peat	1.96%
Rhizoplane	Host-Associated → Plants → Rhizoplane	0.98%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	64.71%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	14.71%
Loam	Environmental → Terrestrial → Soil → Loam	13.73%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	2.94%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	1.96%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.98%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.98%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	50.00%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	8.82%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	8.82%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	6.86%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	5.88%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	4.90%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	2.94%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	2.94%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.96%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	1.96%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	0.98%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.98%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.98%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.98%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.98%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	39.22%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	8.82%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	6.86%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	5.88%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	4.90%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	3.92%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	2.94%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	2.94%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	2.94%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	2.94%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	1.96%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	1.96%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.96%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	0.98%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.98%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	0.98%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.98%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.98%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.98%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.98%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.98%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.98%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.98%
Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil	0.98%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	0.98%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.98%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000567	Peat soil microbial communities from Weissenstadt, Germany - SII-2010	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300004080	Coassembly of ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300004152	Coassembly of ECP12_OM1, ECP12_OM2, ECP12_OM3	Environmental	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300004477	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 65 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005171	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_126	Environmental	Open in IMG/M
3300005176	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_128	Environmental	Open in IMG/M
3300005178	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137	Environmental	Open in IMG/M
3300005187	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124	Environmental	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005450	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_131	Environmental	Open in IMG/M
3300005537	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1	Environmental	Open in IMG/M
3300005542	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1	Environmental	Open in IMG/M
3300005575	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_151	Environmental	Open in IMG/M
3300005577	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2	Host-Associated	Open in IMG/M
3300005586	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_140	Environmental	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006034	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_105	Environmental	Open in IMG/M
3300006052	Freshwater sediment microbial communities from North America - Little Laurel Run_MetaG_LLR_2013	Environmental	Open in IMG/M
3300006059	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2012	Environmental	Open in IMG/M
3300006086	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2013	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009088	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG	Environmental	Open in IMG/M
3300009089	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG	Environmental	Open in IMG/M
3300009522	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_5_LS metaG	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010159	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_3	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300011269	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaG	Environmental	Open in IMG/M
3300011270	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG	Environmental	Open in IMG/M
3300011271	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaG	Environmental	Open in IMG/M
3300012096	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012206	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaG	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012349	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Sage2_R_115_16 metaG	Environmental	Open in IMG/M
3300012351	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_100_16 metaG	Environmental	Open in IMG/M
3300012357	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaG	Environmental	Open in IMG/M
3300012363	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG	Environmental	Open in IMG/M
3300012683	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaG	Environmental	Open in IMG/M
3300012917	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaG	Environmental	Open in IMG/M
3300012918	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaG	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300015241	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015264	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300016702	Metatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_30_metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300017822	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_2	Environmental	Open in IMG/M
3300017823	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_3	Environmental	Open in IMG/M
3300017930	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_5	Environmental	Open in IMG/M
3300017933	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_1	Environmental	Open in IMG/M
3300017943	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_4	Environmental	Open in IMG/M
3300017946	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_10	Environmental	Open in IMG/M
3300017994	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_2	Environmental	Open in IMG/M
3300018006	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_4	Environmental	Open in IMG/M
3300018009	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_20_40	Environmental	Open in IMG/M
3300018012	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_5	Environmental	Open in IMG/M
3300025448	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_13_100 (SPAdes)	Environmental	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026474	Peat soil microbial communities from Stordalen Mire, Sweden - P.F.S.T0	Environmental	Open in IMG/M
3300026551	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)	Environmental	Open in IMG/M
3300027439	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM3_M1 (SPAdes)	Environmental	Open in IMG/M
3300027497	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_1_NS metaG (SPAdes)	Environmental	Open in IMG/M
3300027857	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027862	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027875	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300028047	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300028536	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300028906	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)	Environmental	Open in IMG/M
3300029882	III_Palsa_E1 coassembly	Environmental	Open in IMG/M
3300031938	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R1	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300032828	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.4	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12270J11330_100258404	3300000567	Peatlands Soil	VKHLQLTPETYVSSAALRTWCERNKNRIYIPEWLLAEWRLTVDPTFSGAA*
JGIcombinedJ26739_1016200442	3300002245	Forest Soil	LRTWCEQNRNRCYVPEWLLKEWGFTVDLGFNDAA*
Ga0062385_106546791	3300004080	Bog Forest Soil	LQLTPEMYTSSPQLRAWCERNRNRCYVPEWLLKAWDITVDPSSAA*
Ga0062386_1012091912	3300004152	Bog Forest Soil	SQLQLTPEMYTSSAELRAWCERNRNRCYVPEWLLKEWDITVDPSSAA*
Ga0062589_1005840272	3300004156	Soil	MYISSRELRVWCERNRNRLYVPEWLLKEWGMTVDTTSGLAA*
Ga0068971_11736791	3300004477	Peatlands Soil	TPEMYAFSQELKLWCERNRNRIYIPEWLLDEWGISVDPNFSDAA*
Ga0066677_108037162	3300005171	Soil	TSEMYASSVELRIWCEQNRNRIYIPEWLLKEWGITVDLGFNDAA*
Ga0066679_100125341	3300005176	Soil	LQLTAEMYASSAALRMWCEQNRNRHYVPEWLLEEWDITVDSRL*
Ga0066688_105293551	3300005178	Soil	MYTSSRELRTWCDRNRNRVYIPEWLLEKWDITVDAIFSGTA*
Ga0066675_109159671	3300005187	Soil	PEMYTSSVELRIWCEHNTNRIYIPEWLLAEWDITVDLAFGGVA*
Ga0070714_1017787882	3300005435	Agricultural Soil	VKRLHLKPQMYMSSRELRIWCQQNRNRVFIPEWLLEEWEITVDDLFTGAA*
Ga0066682_109507741	3300005450	Soil	VRHLQLTPEMYATSIELRTWCEHNRNRCYVPEWLLEEWSITVDPTFSDAA*
Ga0070730_102662831	3300005537	Surface Soil	AEYVASRELRRWCDRNRNRIYIPEWLLREWGMEVEGIYSGVA*
Ga0070730_103353271	3300005537	Surface Soil	RQLRLTPQMYAASRELRIWCELNRNRVWVPEWLLQEWGIAVDEVFDRTA*
Ga0070732_100066292	3300005542	Surface Soil	MYAASRALRLWCEKNRNRVYVPEWLLEEWGIDVDGIFDRTA*
Ga0066702_105658732	3300005575	Soil	VRQLQLTAGMYTSSRELRAWCERNRNRLYIPEWLLEEWGITVDLNFSVAA*
Ga0068857_1016283071	3300005577	Corn Rhizosphere	TYASSHELRIWCQQNRNRVYVPEWLLKKWEITVDELFTGAA*
Ga0066691_107938572	3300005586	Soil	TSSVELRLWCQQNRNRIYIPEWLLKEWDITVDLGFSSVA*
Ga0070717_104123101	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	AQLQLTVEMYTSSRELRIWCERNRNRVYIPEWLLKDLDIAVDAFFSGVA*
Ga0066656_105271631	3300006034	Soil	VRHLQLTPEMYATSIELRTWCEHNRNRCYVPEWLLEEWSITVDP
Ga0075029_1004795521	3300006052	Watersheds	MYSSSFELRSWCEQNRNRLYVPEWLLEEWGITVDPYISAAA*
Ga0075017_1000944091	3300006059	Watersheds	FELRVRHLQLTPEMYSSSRALRIWCQQNKNRIYIPEWLLKEWHITVDPQFIAAP*
Ga0075019_107606291	3300006086	Watersheds	GMYTSSAELRIWCERNRNRLYVPEWLLEEWGITVDATFSGVTRPRNNS*
Ga0070765_1002956774	3300006176	Soil	TADMYISSTALRAWCEQNKNRVYIPELLLAEWRIAVDAA*
Ga0070765_1009603872	3300006176	Soil	MYASSLELRIWCEQNRNRRYVPESLLAEWRITVDLHFSYAA*
Ga0079219_121244302	3300006954	Agricultural Soil	ELRCWCEQNRNRCYIPEWLLDAWDIIVDTDFGGAPFPPPGSRLHHS*
Ga0099829_107925211	3300009038	Vadose Zone Soil	MYTSSRELRAWCEQNRNRLYIPEWLLEEWGITVDQNFFGAVA*
Ga0099829_108380941	3300009038	Vadose Zone Soil	GTYTSSLELRVWCEQNRNRCYIPEWLLEEWLITVHPNFSAVA*
Ga0099829_112007531	3300009038	Vadose Zone Soil	RMYTSSLELRAWCEQNRNRCYIPEWLLKEWDITVDANFSAAA*
Ga0099829_113265281	3300009038	Vadose Zone Soil	MYTSSRELRIWCDRNRNRVYIPEWLLEKWAITVDAIFSGAA*
Ga0099830_108102283	3300009088	Vadose Zone Soil	EMYASSVELRTWCEQNRNRIDVPEWLLKEWDITVDANFCGAA*
Ga0099830_114842561	3300009088	Vadose Zone Soil	SLELRAWCEQNRNRCYIPEWLLKEWDISVDANFSAAA*
Ga0099828_107406733	3300009089	Vadose Zone Soil	YTSSRELRIWCEQNRNRLYIPEWLLKEWGITVDLNFSAAA*
Ga0116218_14104512	3300009522	Peatlands Soil	MYTSSIELRTWCERNRNRLYIPEWLLKEWGVIVDLGFSGA
Ga0126373_100314353	3300010048	Tropical Forest Soil	MLVQELELTPEMYAASPELRHWCERNRNRVYIPEWLLKKWDISVDLNFSDAA*
Ga0099796_101783342	3300010159	Vadose Zone Soil	RLTARMYASSAELRTWCEQNRNRLYVPEWLLEEWSITVDLTSDAAA*
Ga0136449_1006908055	3300010379	Peatlands Soil	KQLQLTPEMYASSAELWTWCQQNKNRVYIPEWLLVEWRITVDPTFSDAA*
Ga0134124_117379612	3300010397	Terrestrial Soil	ELTEVMYASSRELRTWCEGNRNRLYVPEWLLAEWDMVVDINFSAAA*
Ga0137392_102991991	3300011269	Vadose Zone Soil	TPEMYASSVELRTWCEQNRNRIDVPEWLLKEWDITVDANFCGAA*
Ga0137392_114457272	3300011269	Vadose Zone Soil	HLQLTPEMYASSAELRTWCQQNRNRIYIPEWLLNEWDITVDLGFGSVA*
Ga0137391_102139743	3300011270	Vadose Zone Soil	MYTSSLELRAWCEQNRNRLYIPEWLLKEWGITVDLNFSAAA*
Ga0137391_114324031	3300011270	Vadose Zone Soil	ELRAWCQQNRNRIYVPEWLLKEWGITVDLGFNGAA*
Ga0137393_109884171	3300011271	Vadose Zone Soil	SRELRAWCEQNRNRCYIPEWLLEEWGITVDLNFGAVA*
Ga0137389_115060801	3300012096	Vadose Zone Soil	MCTSSRELRIWCDRNRNRVYIPEWLLEKLDITVDAIFSG
Ga0137399_102449282	3300012203	Vadose Zone Soil	AEMYASSRELRTWCDRNRNRVYIPEWLLEKWDITVDAIFSGTA*
Ga0137380_100597501	3300012206	Vadose Zone Soil	MYTSSRELRIWCDRNRNRVYIPEWLLEKWDITVDAIFSGAA*
Ga0137380_113959792	3300012206	Vadose Zone Soil	ELRIWCEQNRNRIYIPEWLLKEWGITVDLGFNDAA*
Ga0137378_102131991	3300012210	Vadose Zone Soil	EMYTSSRELRTWCDRNRNRVYIPEWLLEKWDITVDAIFSGTA*
Ga0137378_102477203	3300012210	Vadose Zone Soil	SRELRIWCDRNRNRVYIPEWLLEKWDITVDAIFSGTA*
Ga0137378_107652022	3300012210	Vadose Zone Soil	MYTSSRELRIWCDRNRNRVYIPEWLLEKWDITVDAI
Ga0137387_105370422	3300012349	Vadose Zone Soil	KQLHLTAEMYTSSRELRTWCDRNRNRVYIPEWLLEKWDITVDAIFSGTA*
Ga0137386_108372452	3300012351	Vadose Zone Soil	YASSAQLRIWCEQNRNRLYVPEWLLEEWGMRVDPMFSDAA*
Ga0137386_112567001	3300012351	Vadose Zone Soil	ELRTWCDRNRNRVYIPEWLLEKWDITVDAIFSGTA*
Ga0137384_104587402	3300012357	Vadose Zone Soil	KQLQLTAEMYTSSRELRTWCDRNRNRVYIPEWLLEKWDITVDAIFSGTA*
Ga0137384_113955521	3300012357	Vadose Zone Soil	KQLQLTAEMYTSSRELRTWCDRNRNRVYIPEWLLEKWDITVDAIFSGAA*
Ga0137390_103109414	3300012363	Vadose Zone Soil	ELRAWCEQNRNRCYVPEWLLKEWGITVDLGFNDAA*
Ga0137390_103181582	3300012363	Vadose Zone Soil	MYASSVELRTWCEQNRNRIDVPEWLLKEWDITVDANFCGAA*
Ga0137390_104385653	3300012363	Vadose Zone Soil	RELRAWCEQNRNRVYIPEWLLEEWGITVDPNFSAAA*
Ga0137398_100465755	3300012683	Vadose Zone Soil	QLTAGMYTSSAELRAWCEQNRNRLYVPEWLLEEWGITVDLNFSTAA*
Ga0137395_108711581	3300012917	Vadose Zone Soil	LRTWCQQNRNRIYLPEWLLKEWGITVDLGFNDAA*
Ga0137395_111389662	3300012917	Vadose Zone Soil	SSLELRAWCEQNRNRLYVPEWLLKEWGITVDPTFSAAA*
Ga0137396_103714964	3300012918	Vadose Zone Soil	LQLTPEMYTSSRELRIWCEQNRNRIYIPEWLLKEWGLTVDLGFNDAA*
Ga0137396_111234671	3300012918	Vadose Zone Soil	SSRELRTWCDRNRNRVYIPEWLLEKWDITVDAIFSGTA*
Ga0137404_116376992	3300012929	Vadose Zone Soil	MYTSSRELRIWCDRNRNRVYIPEWLLEKWDITVDAIFSGTA*
Ga0137418_105842022	3300015241	Vadose Zone Soil	QVKQLQLTAEMYASSRELRTWCDRNRNRVYIPEWLLEKWDITVDAIFSGTA*
Ga0137403_100060163	3300015264	Vadose Zone Soil	MYTSSPELRIWCKRNRNRLYIPEWLLEEWGITVDQNFFGAAA*
Ga0182039_117240991	3300016422	Soil	GLRTPDYVGSLELKRWCERNRNRVYIPEWLLKEWEMLVDLNFMAA
Ga0181511_13945912	3300016702	Peatland	VRQLQLTAELYISSRELRAWCEQNRNRRYVPELLLKAWGITVDSSFSDAA
Ga0187802_100134283	3300017822	Freshwater Sediment	MYISSRELRIWCERNRNRVYIPEWLLQEWDITVDAIFSGAA
Ga0187818_103402951	3300017823	Freshwater Sediment	ETYTCSRDLRAWCEQNRNRLYVPEWLLEEWGITVDLNFGAVARPNHANNS
Ga0187825_100394651	3300017930	Freshwater Sediment	LHLAPEKYASSRELRLWCEQNRNRVYVPEWLLAEWGIAVDALPSDAA
Ga0187801_100418891	3300017933	Freshwater Sediment	LHLTAGMYASSRELRAWCERNKNRCYVPEWLLKEWGITVDINFTAVA
Ga0187819_107953801	3300017943	Freshwater Sediment	DLRAWCEQNRNRLYVPEWLLEEWGITVDLNFGAVARPNHANNS
Ga0187879_105045502	3300017946	Peatland	YTSSATLHAWCEQNKNRRYVPEWLLAEWCITVDTYFSDAA
Ga0187822_101944111	3300017994	Freshwater Sediment	AKRLHLGPEGYASSIELRLWCERNRNRVYVPEWLLQEWGISVDDLSSGAA
Ga0187804_101197512	3300018006	Freshwater Sediment	SRDLRAWCEQNRNRLYVPEWLLEEWGITVDLNFGAVARPNHANNS
Ga0187884_100937854	3300018009	Peatland	LYISSRELRAWCEQNRNRRYVPELLLKAWGITVDASFSDAA
Ga0187810_101230672	3300018012	Freshwater Sediment	AWCEQNRNRLYVPEWLLEEWGITVDLNFGAVARPNHANNS
Ga0187810_104665081	3300018012	Freshwater Sediment	MYTSSVELRTWCEQNRNRLYVPEWLLEEWGITVELNFTAVA
Ga0208037_10051485	3300025448	Peatland	RQLQLTAELYISSRELRAWCEQNRNRRYVPELLLKAWGITVDASFSDAA
Ga0207684_106387133	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	QLTAGMYTSSAELRAWCEQNRNRCYVPEWLLEEWGITVDLNFSAAA
Ga0207646_105822771	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	TYSSSLELHAWCEQNRNRLYVPEWLLEEWGITVDLTFGAVA
Ga0207646_111288541	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	GMYTSSRELHTWCERNRNRFYIPEWLLEEWGITVDLNFSAAA
Ga0207646_114276922	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	MYTSSRELRIWCDRNRNRVYIPEWLLEKWDITVDAIFSGAA
Ga0207700_116469851	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	ARLRIWCEQYRNRVDVPEWLLEEWGIRVDPMFSEVA
Ga0247846_10206844	3300026474	Soil	TYTYSRDLRAWCEQNRNRLYVPEWLLEEWGITVDLNFGAVARPNHANNS
Ga0209648_102689381	3300026551	Grasslands Soil	MQLTAEMYTSSRELRIWCEQNRNRVYIPEWLLREWDITVDAIFSGAA
Ga0209648_103680021	3300026551	Grasslands Soil	MYASSVELRAWCEQNRNRIYIPEWLLQEWDITVDLGFNDAARPPPLE
Ga0209332_10737782	3300027439	Forest Soil	QLTAGMYASSAELRAWCEQNRNRLYVPEWLLEEWGITVDPTFDAAA
Ga0208199_11248941	3300027497	Peatlands Soil	LRVTQLQLTPEMYASSAELWTWCQQNKNRVYIPEWLLAEWLITVDPTFSDAA
Ga0209166_101878191	3300027857	Surface Soil	VASRELRRWCDRNRNRIYIPEWLLREWGMEVEGIYSGVA
Ga0209701_103464472	3300027862	Vadose Zone Soil	AGTYTSSLELRVWCEQNRNRCYVPEWLLEEWLITVDPNFSAVA
Ga0209283_105668331	3300027875	Vadose Zone Soil	SRELRTWCDRNRNRVYIPEWLLEKWDITVDAIFSGTA
Ga0209283_108860441	3300027875	Vadose Zone Soil	ELRTWCEQNRNRIDVPEWLLKEWDITVDANFCGAA
Ga0209526_103137831	3300028047	Forest Soil	APEMYISSVELRIWCEQNRNRIYIPEWLLKEWGITVDLGFNDAA
Ga0137415_109271172	3300028536	Vadose Zone Soil	TLGMYTSSVELRTWCKRNRNVPEWLLEEWGITVDPYFSGAA
Ga0308309_107874832	3300028906	Soil	LRLTPEMYASSLELRIWCEQNRNRRYVPESLLAEWRITVDLHFSYAA
Ga0311368_104334821	3300029882	Palsa	DMYTSSAALRAWCEQNKNRVFIPEWLLKELCIAVDAE
Ga0308175_1020888781	3300031938	Soil	ELRLWCAQNRNRVYVPEWLLQEWHLTVEPTHSGAV
Ga0307471_1027627171	3300032180	Hardwood Forest Soil	VPAEFEIQVRELELTPEMYVGSRELKNWCKLNRNRVYIPEWLLRKWDISVDLNFSEAA
Ga0307472_1020577421	3300032205	Hardwood Forest Soil	SQLRLTARMYASSAELRAWCEENRNRLYVPEWLLEEWGITVDLSFDAAA
Ga0335080_120885842	3300032828	Soil	LSAALRTWCKLNRNRVYIPEWLLEEWGLEVNVGFSGL

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F101570

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences