Basic Information | |
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Family ID | F101570 |
Family Type | Metagenome / Metatranscriptome |
Number of Sequences | 102 |
Average Sequence Length | 43 residues |
Representative Sequence | MYTSSLELRAWCEQNRNRLYIPEWLLKEWGITVDLNFSAAA |
Number of Associated Samples | 80 |
Number of Associated Scaffolds | 102 |
Quality Assessment | |
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Transcriptomic Evidence | Yes |
Most common taxonomic group | Bacteria |
% of genes with valid RBS motifs | 3.92 % |
% of genes near scaffold ends (potentially truncated) | 86.27 % |
% of genes from short scaffolds (< 2000 bps) | 90.20 % |
Associated GOLD sequencing projects | 74 |
AlphaFold2 3D model prediction | Yes |
3D model pTM-score | 0.37 |
Hidden Markov Model |
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Most Common Taxonomy | |
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Group | Bacteria (73.529 % of family members) |
NCBI Taxonomy ID | 2 |
Taxonomy | All Organisms → cellular organisms → Bacteria |
Most Common Ecosystem | |
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GOLD Ecosystem | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (39.216 % of family members) |
Environment Ontology (ENVO) | Unclassified (40.196 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Host-associated → Plant → Plant rhizosphere (47.059 % of family members) |
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Full Alignment |
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Alignment of all the sequences in the family. |
IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68. |
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Predicted Topology & Secondary Structure | |||||
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Classification: | Globular | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 26.09% β-sheet: 0.00% Coil/Unstructured: 73.91% |
Feature Viewer | |||||
Position : 0 Zoom : x 1 Enter the variants Position Original Variant |
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Structure Viewer | |
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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.37 |
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Visualization |
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All Organisms Unclassified |
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Visualization |
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Peatland Bog Forest Soil Peatland Freshwater Sediment Watersheds Vadose Zone Soil Terrestrial Soil Tropical Forest Soil Surface Soil Peatlands Soil Soil Agricultural Soil Soil Grasslands Soil Soil Hardwood Forest Soil Soil Soil Soil Forest Soil Soil Corn, Switchgrass And Miscanthus Rhizosphere Agricultural Soil Soil Palsa Corn Rhizosphere |
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Protein ID | Sample Taxon ID | Habitat | Sequence |
JGI12270J11330_100258404 | 3300000567 | Peatlands Soil | VKHLQLTPETYVSSAALRTWCERNKNRIYIPEWLLAEWRLTVDPTFSGAA* |
JGIcombinedJ26739_1016200442 | 3300002245 | Forest Soil | LRTWCEQNRNRCYVPEWLLKEWGFTVDLGFNDAA* |
Ga0062385_106546791 | 3300004080 | Bog Forest Soil | LQLTPEMYTSSPQLRAWCERNRNRCYVPEWLLKAWDITVDPSSAA* |
Ga0062386_1012091912 | 3300004152 | Bog Forest Soil | SQLQLTPEMYTSSAELRAWCERNRNRCYVPEWLLKEWDITVDPSSAA* |
Ga0062589_1005840272 | 3300004156 | Soil | MYISSRELRVWCERNRNRLYVPEWLLKEWGMTVDTTSGLAA* |
Ga0068971_11736791 | 3300004477 | Peatlands Soil | TPEMYAFSQELKLWCERNRNRIYIPEWLLDEWGISVDPNFSDAA* |
Ga0066677_108037162 | 3300005171 | Soil | TSEMYASSVELRIWCEQNRNRIYIPEWLLKEWGITVDLGFNDAA* |
Ga0066679_100125341 | 3300005176 | Soil | LQLTAEMYASSAALRMWCEQNRNRHYVPEWLLEEWDITVDSRL* |
Ga0066688_105293551 | 3300005178 | Soil | MYTSSRELRTWCDRNRNRVYIPEWLLEKWDITVDAIFSGTA* |
Ga0066675_109159671 | 3300005187 | Soil | PEMYTSSVELRIWCEHNTNRIYIPEWLLAEWDITVDLAFGGVA* |
Ga0070714_1017787882 | 3300005435 | Agricultural Soil | VKRLHLKPQMYMSSRELRIWCQQNRNRVFIPEWLLEEWEITVDDLFTGAA* |
Ga0066682_109507741 | 3300005450 | Soil | VRHLQLTPEMYATSIELRTWCEHNRNRCYVPEWLLEEWSITVDPTFSDAA* |
Ga0070730_102662831 | 3300005537 | Surface Soil | AEYVASRELRRWCDRNRNRIYIPEWLLREWGMEVEGIYSGVA* |
Ga0070730_103353271 | 3300005537 | Surface Soil | RQLRLTPQMYAASRELRIWCELNRNRVWVPEWLLQEWGIAVDEVFDRTA* |
Ga0070732_100066292 | 3300005542 | Surface Soil | MYAASRALRLWCEKNRNRVYVPEWLLEEWGIDVDGIFDRTA* |
Ga0066702_105658732 | 3300005575 | Soil | VRQLQLTAGMYTSSRELRAWCERNRNRLYIPEWLLEEWGITVDLNFSVAA* |
Ga0068857_1016283071 | 3300005577 | Corn Rhizosphere | TYASSHELRIWCQQNRNRVYVPEWLLKKWEITVDELFTGAA* |
Ga0066691_107938572 | 3300005586 | Soil | TSSVELRLWCQQNRNRIYIPEWLLKEWDITVDLGFSSVA* |
Ga0070717_104123101 | 3300006028 | Corn, Switchgrass And Miscanthus Rhizosphere | AQLQLTVEMYTSSRELRIWCERNRNRVYIPEWLLKDLDIAVDAFFSGVA* |
Ga0066656_105271631 | 3300006034 | Soil | VRHLQLTPEMYATSIELRTWCEHNRNRCYVPEWLLEEWSITVDP |
Ga0075029_1004795521 | 3300006052 | Watersheds | MYSSSFELRSWCEQNRNRLYVPEWLLEEWGITVDPYISAAA* |
Ga0075017_1000944091 | 3300006059 | Watersheds | FELRVRHLQLTPEMYSSSRALRIWCQQNKNRIYIPEWLLKEWHITVDPQFIAAP* |
Ga0075019_107606291 | 3300006086 | Watersheds | GMYTSSAELRIWCERNRNRLYVPEWLLEEWGITVDATFSGVTRPRNNS* |
Ga0070765_1002956774 | 3300006176 | Soil | TADMYISSTALRAWCEQNKNRVYIPELLLAEWRIAVDAA* |
Ga0070765_1009603872 | 3300006176 | Soil | MYASSLELRIWCEQNRNRRYVPESLLAEWRITVDLHFSYAA* |
Ga0079219_121244302 | 3300006954 | Agricultural Soil | ELRCWCEQNRNRCYIPEWLLDAWDIIVDTDFGGAPFPPPGSRLHHS* |
Ga0099829_107925211 | 3300009038 | Vadose Zone Soil | MYTSSRELRAWCEQNRNRLYIPEWLLEEWGITVDQNFFGAVA* |
Ga0099829_108380941 | 3300009038 | Vadose Zone Soil | GTYTSSLELRVWCEQNRNRCYIPEWLLEEWLITVHPNFSAVA* |
Ga0099829_112007531 | 3300009038 | Vadose Zone Soil | RMYTSSLELRAWCEQNRNRCYIPEWLLKEWDITVDANFSAAA* |
Ga0099829_113265281 | 3300009038 | Vadose Zone Soil | MYTSSRELRIWCDRNRNRVYIPEWLLEKWAITVDAIFSGAA* |
Ga0099830_108102283 | 3300009088 | Vadose Zone Soil | EMYASSVELRTWCEQNRNRIDVPEWLLKEWDITVDANFCGAA* |
Ga0099830_114842561 | 3300009088 | Vadose Zone Soil | SLELRAWCEQNRNRCYIPEWLLKEWDISVDANFSAAA* |
Ga0099828_107406733 | 3300009089 | Vadose Zone Soil | YTSSRELRIWCEQNRNRLYIPEWLLKEWGITVDLNFSAAA* |
Ga0116218_14104512 | 3300009522 | Peatlands Soil | MYTSSIELRTWCERNRNRLYIPEWLLKEWGVIVDLGFSGA |
Ga0126373_100314353 | 3300010048 | Tropical Forest Soil | MLVQELELTPEMYAASPELRHWCERNRNRVYIPEWLLKKWDISVDLNFSDAA* |
Ga0099796_101783342 | 3300010159 | Vadose Zone Soil | RLTARMYASSAELRTWCEQNRNRLYVPEWLLEEWSITVDLTSDAAA* |
Ga0136449_1006908055 | 3300010379 | Peatlands Soil | KQLQLTPEMYASSAELWTWCQQNKNRVYIPEWLLVEWRITVDPTFSDAA* |
Ga0134124_117379612 | 3300010397 | Terrestrial Soil | ELTEVMYASSRELRTWCEGNRNRLYVPEWLLAEWDMVVDINFSAAA* |
Ga0137392_102991991 | 3300011269 | Vadose Zone Soil | TPEMYASSVELRTWCEQNRNRIDVPEWLLKEWDITVDANFCGAA* |
Ga0137392_114457272 | 3300011269 | Vadose Zone Soil | HLQLTPEMYASSAELRTWCQQNRNRIYIPEWLLNEWDITVDLGFGSVA* |
Ga0137391_102139743 | 3300011270 | Vadose Zone Soil | MYTSSLELRAWCEQNRNRLYIPEWLLKEWGITVDLNFSAAA* |
Ga0137391_114324031 | 3300011270 | Vadose Zone Soil | ELRAWCQQNRNRIYVPEWLLKEWGITVDLGFNGAA* |
Ga0137393_109884171 | 3300011271 | Vadose Zone Soil | SRELRAWCEQNRNRCYIPEWLLEEWGITVDLNFGAVA* |
Ga0137389_115060801 | 3300012096 | Vadose Zone Soil | MCTSSRELRIWCDRNRNRVYIPEWLLEKLDITVDAIFSG |
Ga0137399_102449282 | 3300012203 | Vadose Zone Soil | AEMYASSRELRTWCDRNRNRVYIPEWLLEKWDITVDAIFSGTA* |
Ga0137380_100597501 | 3300012206 | Vadose Zone Soil | MYTSSRELRIWCDRNRNRVYIPEWLLEKWDITVDAIFSGAA* |
Ga0137380_113959792 | 3300012206 | Vadose Zone Soil | ELRIWCEQNRNRIYIPEWLLKEWGITVDLGFNDAA* |
Ga0137378_102131991 | 3300012210 | Vadose Zone Soil | EMYTSSRELRTWCDRNRNRVYIPEWLLEKWDITVDAIFSGTA* |
Ga0137378_102477203 | 3300012210 | Vadose Zone Soil | SRELRIWCDRNRNRVYIPEWLLEKWDITVDAIFSGTA* |
Ga0137378_107652022 | 3300012210 | Vadose Zone Soil | MYTSSRELRIWCDRNRNRVYIPEWLLEKWDITVDAI |
Ga0137387_105370422 | 3300012349 | Vadose Zone Soil | KQLHLTAEMYTSSRELRTWCDRNRNRVYIPEWLLEKWDITVDAIFSGTA* |
Ga0137386_108372452 | 3300012351 | Vadose Zone Soil | YASSAQLRIWCEQNRNRLYVPEWLLEEWGMRVDPMFSDAA* |
Ga0137386_112567001 | 3300012351 | Vadose Zone Soil | ELRTWCDRNRNRVYIPEWLLEKWDITVDAIFSGTA* |
Ga0137384_104587402 | 3300012357 | Vadose Zone Soil | KQLQLTAEMYTSSRELRTWCDRNRNRVYIPEWLLEKWDITVDAIFSGTA* |
Ga0137384_113955521 | 3300012357 | Vadose Zone Soil | KQLQLTAEMYTSSRELRTWCDRNRNRVYIPEWLLEKWDITVDAIFSGAA* |
Ga0137390_103109414 | 3300012363 | Vadose Zone Soil | ELRAWCEQNRNRCYVPEWLLKEWGITVDLGFNDAA* |
Ga0137390_103181582 | 3300012363 | Vadose Zone Soil | MYASSVELRTWCEQNRNRIDVPEWLLKEWDITVDANFCGAA* |
Ga0137390_104385653 | 3300012363 | Vadose Zone Soil | RELRAWCEQNRNRVYIPEWLLEEWGITVDPNFSAAA* |
Ga0137398_100465755 | 3300012683 | Vadose Zone Soil | QLTAGMYTSSAELRAWCEQNRNRLYVPEWLLEEWGITVDLNFSTAA* |
Ga0137395_108711581 | 3300012917 | Vadose Zone Soil | LRTWCQQNRNRIYLPEWLLKEWGITVDLGFNDAA* |
Ga0137395_111389662 | 3300012917 | Vadose Zone Soil | SSLELRAWCEQNRNRLYVPEWLLKEWGITVDPTFSAAA* |
Ga0137396_103714964 | 3300012918 | Vadose Zone Soil | LQLTPEMYTSSRELRIWCEQNRNRIYIPEWLLKEWGLTVDLGFNDAA* |
Ga0137396_111234671 | 3300012918 | Vadose Zone Soil | SSRELRTWCDRNRNRVYIPEWLLEKWDITVDAIFSGTA* |
Ga0137404_116376992 | 3300012929 | Vadose Zone Soil | MYTSSRELRIWCDRNRNRVYIPEWLLEKWDITVDAIFSGTA* |
Ga0137418_105842022 | 3300015241 | Vadose Zone Soil | QVKQLQLTAEMYASSRELRTWCDRNRNRVYIPEWLLEKWDITVDAIFSGTA* |
Ga0137403_100060163 | 3300015264 | Vadose Zone Soil | MYTSSPELRIWCKRNRNRLYIPEWLLEEWGITVDQNFFGAAA* |
Ga0182039_117240991 | 3300016422 | Soil | GLRTPDYVGSLELKRWCERNRNRVYIPEWLLKEWEMLVDLNFMAA |
Ga0181511_13945912 | 3300016702 | Peatland | VRQLQLTAELYISSRELRAWCEQNRNRRYVPELLLKAWGITVDSSFSDAA |
Ga0187802_100134283 | 3300017822 | Freshwater Sediment | MYISSRELRIWCERNRNRVYIPEWLLQEWDITVDAIFSGAA |
Ga0187818_103402951 | 3300017823 | Freshwater Sediment | ETYTCSRDLRAWCEQNRNRLYVPEWLLEEWGITVDLNFGAVARPNHANNS |
Ga0187825_100394651 | 3300017930 | Freshwater Sediment | LHLAPEKYASSRELRLWCEQNRNRVYVPEWLLAEWGIAVDALPSDAA |
Ga0187801_100418891 | 3300017933 | Freshwater Sediment | LHLTAGMYASSRELRAWCERNKNRCYVPEWLLKEWGITVDINFTAVA |
Ga0187819_107953801 | 3300017943 | Freshwater Sediment | DLRAWCEQNRNRLYVPEWLLEEWGITVDLNFGAVARPNHANNS |
Ga0187879_105045502 | 3300017946 | Peatland | YTSSATLHAWCEQNKNRRYVPEWLLAEWCITVDTYFSDAA |
Ga0187822_101944111 | 3300017994 | Freshwater Sediment | AKRLHLGPEGYASSIELRLWCERNRNRVYVPEWLLQEWGISVDDLSSGAA |
Ga0187804_101197512 | 3300018006 | Freshwater Sediment | SRDLRAWCEQNRNRLYVPEWLLEEWGITVDLNFGAVARPNHANNS |
Ga0187884_100937854 | 3300018009 | Peatland | LYISSRELRAWCEQNRNRRYVPELLLKAWGITVDASFSDAA |
Ga0187810_101230672 | 3300018012 | Freshwater Sediment | AWCEQNRNRLYVPEWLLEEWGITVDLNFGAVARPNHANNS |
Ga0187810_104665081 | 3300018012 | Freshwater Sediment | MYTSSVELRTWCEQNRNRLYVPEWLLEEWGITVELNFTAVA |
Ga0208037_10051485 | 3300025448 | Peatland | RQLQLTAELYISSRELRAWCEQNRNRRYVPELLLKAWGITVDASFSDAA |
Ga0207684_106387133 | 3300025910 | Corn, Switchgrass And Miscanthus Rhizosphere | QLTAGMYTSSAELRAWCEQNRNRCYVPEWLLEEWGITVDLNFSAAA |
Ga0207646_105822771 | 3300025922 | Corn, Switchgrass And Miscanthus Rhizosphere | TYSSSLELHAWCEQNRNRLYVPEWLLEEWGITVDLTFGAVA |
Ga0207646_111288541 | 3300025922 | Corn, Switchgrass And Miscanthus Rhizosphere | GMYTSSRELHTWCERNRNRFYIPEWLLEEWGITVDLNFSAAA |
Ga0207646_114276922 | 3300025922 | Corn, Switchgrass And Miscanthus Rhizosphere | MYTSSRELRIWCDRNRNRVYIPEWLLEKWDITVDAIFSGAA |
Ga0207700_116469851 | 3300025928 | Corn, Switchgrass And Miscanthus Rhizosphere | ARLRIWCEQYRNRVDVPEWLLEEWGIRVDPMFSEVA |
Ga0247846_10206844 | 3300026474 | Soil | TYTYSRDLRAWCEQNRNRLYVPEWLLEEWGITVDLNFGAVARPNHANNS |
Ga0209648_102689381 | 3300026551 | Grasslands Soil | MQLTAEMYTSSRELRIWCEQNRNRVYIPEWLLREWDITVDAIFSGAA |
Ga0209648_103680021 | 3300026551 | Grasslands Soil | MYASSVELRAWCEQNRNRIYIPEWLLQEWDITVDLGFNDAARPPPLE |
Ga0209332_10737782 | 3300027439 | Forest Soil | QLTAGMYASSAELRAWCEQNRNRLYVPEWLLEEWGITVDPTFDAAA |
Ga0208199_11248941 | 3300027497 | Peatlands Soil | LRVTQLQLTPEMYASSAELWTWCQQNKNRVYIPEWLLAEWLITVDPTFSDAA |
Ga0209166_101878191 | 3300027857 | Surface Soil | VASRELRRWCDRNRNRIYIPEWLLREWGMEVEGIYSGVA |
Ga0209701_103464472 | 3300027862 | Vadose Zone Soil | AGTYTSSLELRVWCEQNRNRCYVPEWLLEEWLITVDPNFSAVA |
Ga0209283_105668331 | 3300027875 | Vadose Zone Soil | SRELRTWCDRNRNRVYIPEWLLEKWDITVDAIFSGTA |
Ga0209283_108860441 | 3300027875 | Vadose Zone Soil | ELRTWCEQNRNRIDVPEWLLKEWDITVDANFCGAA |
Ga0209526_103137831 | 3300028047 | Forest Soil | APEMYISSVELRIWCEQNRNRIYIPEWLLKEWGITVDLGFNDAA |
Ga0137415_109271172 | 3300028536 | Vadose Zone Soil | TLGMYTSSVELRTWCKRNRNVPEWLLEEWGITVDPYFSGAA |
Ga0308309_107874832 | 3300028906 | Soil | LRLTPEMYASSLELRIWCEQNRNRRYVPESLLAEWRITVDLHFSYAA |
Ga0311368_104334821 | 3300029882 | Palsa | DMYTSSAALRAWCEQNKNRVFIPEWLLKELCIAVDAE |
Ga0308175_1020888781 | 3300031938 | Soil | ELRLWCAQNRNRVYVPEWLLQEWHLTVEPTHSGAV |
Ga0307471_1027627171 | 3300032180 | Hardwood Forest Soil | VPAEFEIQVRELELTPEMYVGSRELKNWCKLNRNRVYIPEWLLRKWDISVDLNFSEAA |
Ga0307472_1020577421 | 3300032205 | Hardwood Forest Soil | SQLRLTARMYASSAELRAWCEENRNRLYVPEWLLEEWGITVDLSFDAAA |
Ga0335080_120885842 | 3300032828 | Soil | LSAALRTWCKLNRNRVYIPEWLLEEWGLEVNVGFSGL |
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