NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F101570

Metagenome / Metatranscriptome Family F101570

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F101570
Family Type Metagenome / Metatranscriptome
Number of Sequences 102
Average Sequence Length 43 residues
Representative Sequence MYTSSLELRAWCEQNRNRLYIPEWLLKEWGITVDLNFSAAA
Number of Associated Samples 80
Number of Associated Scaffolds 102

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 3.92 %
% of genes near scaffold ends (potentially truncated) 86.27 %
% of genes from short scaffolds (< 2000 bps) 90.20 %
Associated GOLD sequencing projects 74
AlphaFold2 3D model prediction Yes
3D model pTM-score0.37

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (73.529 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil
(39.216 % of family members)
Environment Ontology (ENVO) Unclassified
(40.196 % of family members)
Earth Microbiome Project Ontology (EMPO) Host-associated → Plant → Plant rhizosphere
(47.059 % of family members)



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Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
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IDLabel
.2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.
1JGI12270J11330_100258404
2JGIcombinedJ26739_1016200442
3Ga0062385_106546791
4Ga0062386_1012091912
5Ga0062589_1005840272
6Ga0068971_11736791
7Ga0066677_108037162
8Ga0066679_100125341
9Ga0066688_105293551
10Ga0066675_109159671
11Ga0070714_1017787882
12Ga0066682_109507741
13Ga0070730_102662831
14Ga0070730_103353271
15Ga0070732_100066292
16Ga0066702_105658732
17Ga0068857_1016283071
18Ga0066691_107938572
19Ga0070717_104123101
20Ga0066656_105271631
21Ga0075029_1004795521
22Ga0075017_1000944091
23Ga0075019_107606291
24Ga0070765_1002956774
25Ga0070765_1009603872
26Ga0079219_121244302
27Ga0099829_107925211
28Ga0099829_108380941
29Ga0099829_112007531
30Ga0099829_113265281
31Ga0099830_108102283
32Ga0099830_114842561
33Ga0099828_107406733
34Ga0116218_14104512
35Ga0126373_100314353
36Ga0099796_101783342
37Ga0136449_1006908055
38Ga0134124_117379612
39Ga0137392_102991991
40Ga0137392_114457272
41Ga0137391_102139743
42Ga0137391_114324031
43Ga0137393_109884171
44Ga0137389_115060801
45Ga0137399_102449282
46Ga0137380_100597501
47Ga0137380_113959792
48Ga0137378_102131991
49Ga0137378_102477203
50Ga0137378_107652022
51Ga0137387_105370422
52Ga0137386_108372452
53Ga0137386_112567001
54Ga0137384_104587402
55Ga0137384_113955521
56Ga0137390_103109414
57Ga0137390_103181582
58Ga0137390_104385653
59Ga0137398_100465755
60Ga0137395_108711581
61Ga0137395_111389662
62Ga0137396_103714964
63Ga0137396_111234671
64Ga0137404_116376992
65Ga0137418_105842022
66Ga0137403_100060163
67Ga0182039_117240991
68Ga0181511_13945912
69Ga0187802_100134283
70Ga0187818_103402951
71Ga0187825_100394651
72Ga0187801_100418891
73Ga0187819_107953801
74Ga0187879_105045502
75Ga0187822_101944111
76Ga0187804_101197512
77Ga0187884_100937854
78Ga0187810_101230672
79Ga0187810_104665081
80Ga0208037_10051485
81Ga0207684_106387133
82Ga0207646_105822771
83Ga0207646_111288541
84Ga0207646_114276922
85Ga0207700_116469851
86Ga0247846_10206844
87Ga0209648_102689381
88Ga0209648_103680021
89Ga0209332_10737782
90Ga0208199_11248941
91Ga0209166_101878191
92Ga0209701_103464472
93Ga0209283_105668331
94Ga0209283_108860441
95Ga0209526_103137831
96Ga0137415_109271172
97Ga0308309_107874832
98Ga0311368_104334821
99Ga0308175_1020888781
100Ga0307471_1027627171
101Ga0307472_1020577421
102Ga0335080_120885842
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 26.09%    β-sheet: 0.00%    Coil/Unstructured: 73.91%
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Variant

510152025303540MYTSSLELRAWCEQNRNRLYIPEWLLKEWGITVDLNFSAAASequenceα-helicesβ-strandsCoilSS Conf. score
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.37
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains


Neighboring Clusters of Orthologous Genes (COGs)



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Phylogeny

NCBI Taxonomy

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All Organisms
Unclassified
73.5%26.5%
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Associated Scaffolds





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Environmental Properties

Associated Habitat Types

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Visualization
Peatland
Bog Forest Soil
Peatland
Freshwater Sediment
Watersheds
Vadose Zone Soil
Terrestrial Soil
Tropical Forest Soil
Surface Soil
Peatlands Soil
Soil
Agricultural Soil
Soil
Grasslands Soil
Soil
Hardwood Forest Soil
Soil
Soil
Soil
Forest Soil
Soil
Corn, Switchgrass And Miscanthus Rhizosphere
Agricultural Soil
Soil
Palsa
Corn Rhizosphere
2.9%8.8%2.9%39.2%3.9%4.9%6.9%2.9%2.9%5.9%
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Associated Samples


Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
JGI12270J11330_1002584043300000567Peatlands SoilVKHLQLTPETYVSSAALRTWCERNKNRIYIPEWLLAEWRLTVDPTFSGAA*
JGIcombinedJ26739_10162004423300002245Forest SoilLRTWCEQNRNRCYVPEWLLKEWGFTVDLGFNDAA*
Ga0062385_1065467913300004080Bog Forest SoilLQLTPEMYTSSPQLRAWCERNRNRCYVPEWLLKAWDITVDPSSAA*
Ga0062386_10120919123300004152Bog Forest SoilSQLQLTPEMYTSSAELRAWCERNRNRCYVPEWLLKEWDITVDPSSAA*
Ga0062589_10058402723300004156SoilMYISSRELRVWCERNRNRLYVPEWLLKEWGMTVDTTSGLAA*
Ga0068971_117367913300004477Peatlands SoilTPEMYAFSQELKLWCERNRNRIYIPEWLLDEWGISVDPNFSDAA*
Ga0066677_1080371623300005171SoilTSEMYASSVELRIWCEQNRNRIYIPEWLLKEWGITVDLGFNDAA*
Ga0066679_1001253413300005176SoilLQLTAEMYASSAALRMWCEQNRNRHYVPEWLLEEWDITVDSRL*
Ga0066688_1052935513300005178SoilMYTSSRELRTWCDRNRNRVYIPEWLLEKWDITVDAIFSGTA*
Ga0066675_1091596713300005187SoilPEMYTSSVELRIWCEHNTNRIYIPEWLLAEWDITVDLAFGGVA*
Ga0070714_10177878823300005435Agricultural SoilVKRLHLKPQMYMSSRELRIWCQQNRNRVFIPEWLLEEWEITVDDLFTGAA*
Ga0066682_1095077413300005450SoilVRHLQLTPEMYATSIELRTWCEHNRNRCYVPEWLLEEWSITVDPTFSDAA*
Ga0070730_1026628313300005537Surface SoilAEYVASRELRRWCDRNRNRIYIPEWLLREWGMEVEGIYSGVA*
Ga0070730_1033532713300005537Surface SoilRQLRLTPQMYAASRELRIWCELNRNRVWVPEWLLQEWGIAVDEVFDRTA*
Ga0070732_1000662923300005542Surface SoilMYAASRALRLWCEKNRNRVYVPEWLLEEWGIDVDGIFDRTA*
Ga0066702_1056587323300005575SoilVRQLQLTAGMYTSSRELRAWCERNRNRLYIPEWLLEEWGITVDLNFSVAA*
Ga0068857_10162830713300005577Corn RhizosphereTYASSHELRIWCQQNRNRVYVPEWLLKKWEITVDELFTGAA*
Ga0066691_1079385723300005586SoilTSSVELRLWCQQNRNRIYIPEWLLKEWDITVDLGFSSVA*
Ga0070717_1041231013300006028Corn, Switchgrass And Miscanthus RhizosphereAQLQLTVEMYTSSRELRIWCERNRNRVYIPEWLLKDLDIAVDAFFSGVA*
Ga0066656_1052716313300006034SoilVRHLQLTPEMYATSIELRTWCEHNRNRCYVPEWLLEEWSITVDP
Ga0075029_10047955213300006052WatershedsMYSSSFELRSWCEQNRNRLYVPEWLLEEWGITVDPYISAAA*
Ga0075017_10009440913300006059WatershedsFELRVRHLQLTPEMYSSSRALRIWCQQNKNRIYIPEWLLKEWHITVDPQFIAAP*
Ga0075019_1076062913300006086WatershedsGMYTSSAELRIWCERNRNRLYVPEWLLEEWGITVDATFSGVTRPRNNS*
Ga0070765_10029567743300006176SoilTADMYISSTALRAWCEQNKNRVYIPELLLAEWRIAVDAA*
Ga0070765_10096038723300006176SoilMYASSLELRIWCEQNRNRRYVPESLLAEWRITVDLHFSYAA*
Ga0079219_1212443023300006954Agricultural SoilELRCWCEQNRNRCYIPEWLLDAWDIIVDTDFGGAPFPPPGSRLHHS*
Ga0099829_1079252113300009038Vadose Zone SoilMYTSSRELRAWCEQNRNRLYIPEWLLEEWGITVDQNFFGAVA*
Ga0099829_1083809413300009038Vadose Zone SoilGTYTSSLELRVWCEQNRNRCYIPEWLLEEWLITVHPNFSAVA*
Ga0099829_1120075313300009038Vadose Zone SoilRMYTSSLELRAWCEQNRNRCYIPEWLLKEWDITVDANFSAAA*
Ga0099829_1132652813300009038Vadose Zone SoilMYTSSRELRIWCDRNRNRVYIPEWLLEKWAITVDAIFSGAA*
Ga0099830_1081022833300009088Vadose Zone SoilEMYASSVELRTWCEQNRNRIDVPEWLLKEWDITVDANFCGAA*
Ga0099830_1148425613300009088Vadose Zone SoilSLELRAWCEQNRNRCYIPEWLLKEWDISVDANFSAAA*
Ga0099828_1074067333300009089Vadose Zone SoilYTSSRELRIWCEQNRNRLYIPEWLLKEWGITVDLNFSAAA*
Ga0116218_141045123300009522Peatlands SoilMYTSSIELRTWCERNRNRLYIPEWLLKEWGVIVDLGFSGA
Ga0126373_1003143533300010048Tropical Forest SoilMLVQELELTPEMYAASPELRHWCERNRNRVYIPEWLLKKWDISVDLNFSDAA*
Ga0099796_1017833423300010159Vadose Zone SoilRLTARMYASSAELRTWCEQNRNRLYVPEWLLEEWSITVDLTSDAAA*
Ga0136449_10069080553300010379Peatlands SoilKQLQLTPEMYASSAELWTWCQQNKNRVYIPEWLLVEWRITVDPTFSDAA*
Ga0134124_1173796123300010397Terrestrial SoilELTEVMYASSRELRTWCEGNRNRLYVPEWLLAEWDMVVDINFSAAA*
Ga0137392_1029919913300011269Vadose Zone SoilTPEMYASSVELRTWCEQNRNRIDVPEWLLKEWDITVDANFCGAA*
Ga0137392_1144572723300011269Vadose Zone SoilHLQLTPEMYASSAELRTWCQQNRNRIYIPEWLLNEWDITVDLGFGSVA*
Ga0137391_1021397433300011270Vadose Zone SoilMYTSSLELRAWCEQNRNRLYIPEWLLKEWGITVDLNFSAAA*
Ga0137391_1143240313300011270Vadose Zone SoilELRAWCQQNRNRIYVPEWLLKEWGITVDLGFNGAA*
Ga0137393_1098841713300011271Vadose Zone SoilSRELRAWCEQNRNRCYIPEWLLEEWGITVDLNFGAVA*
Ga0137389_1150608013300012096Vadose Zone SoilMCTSSRELRIWCDRNRNRVYIPEWLLEKLDITVDAIFSG
Ga0137399_1024492823300012203Vadose Zone SoilAEMYASSRELRTWCDRNRNRVYIPEWLLEKWDITVDAIFSGTA*
Ga0137380_1005975013300012206Vadose Zone SoilMYTSSRELRIWCDRNRNRVYIPEWLLEKWDITVDAIFSGAA*
Ga0137380_1139597923300012206Vadose Zone SoilELRIWCEQNRNRIYIPEWLLKEWGITVDLGFNDAA*
Ga0137378_1021319913300012210Vadose Zone SoilEMYTSSRELRTWCDRNRNRVYIPEWLLEKWDITVDAIFSGTA*
Ga0137378_1024772033300012210Vadose Zone SoilSRELRIWCDRNRNRVYIPEWLLEKWDITVDAIFSGTA*
Ga0137378_1076520223300012210Vadose Zone SoilMYTSSRELRIWCDRNRNRVYIPEWLLEKWDITVDAI
Ga0137387_1053704223300012349Vadose Zone SoilKQLHLTAEMYTSSRELRTWCDRNRNRVYIPEWLLEKWDITVDAIFSGTA*
Ga0137386_1083724523300012351Vadose Zone SoilYASSAQLRIWCEQNRNRLYVPEWLLEEWGMRVDPMFSDAA*
Ga0137386_1125670013300012351Vadose Zone SoilELRTWCDRNRNRVYIPEWLLEKWDITVDAIFSGTA*
Ga0137384_1045874023300012357Vadose Zone SoilKQLQLTAEMYTSSRELRTWCDRNRNRVYIPEWLLEKWDITVDAIFSGTA*
Ga0137384_1139555213300012357Vadose Zone SoilKQLQLTAEMYTSSRELRTWCDRNRNRVYIPEWLLEKWDITVDAIFSGAA*
Ga0137390_1031094143300012363Vadose Zone SoilELRAWCEQNRNRCYVPEWLLKEWGITVDLGFNDAA*
Ga0137390_1031815823300012363Vadose Zone SoilMYASSVELRTWCEQNRNRIDVPEWLLKEWDITVDANFCGAA*
Ga0137390_1043856533300012363Vadose Zone SoilRELRAWCEQNRNRVYIPEWLLEEWGITVDPNFSAAA*
Ga0137398_1004657553300012683Vadose Zone SoilQLTAGMYTSSAELRAWCEQNRNRLYVPEWLLEEWGITVDLNFSTAA*
Ga0137395_1087115813300012917Vadose Zone SoilLRTWCQQNRNRIYLPEWLLKEWGITVDLGFNDAA*
Ga0137395_1113896623300012917Vadose Zone SoilSSLELRAWCEQNRNRLYVPEWLLKEWGITVDPTFSAAA*
Ga0137396_1037149643300012918Vadose Zone SoilLQLTPEMYTSSRELRIWCEQNRNRIYIPEWLLKEWGLTVDLGFNDAA*
Ga0137396_1112346713300012918Vadose Zone SoilSSRELRTWCDRNRNRVYIPEWLLEKWDITVDAIFSGTA*
Ga0137404_1163769923300012929Vadose Zone SoilMYTSSRELRIWCDRNRNRVYIPEWLLEKWDITVDAIFSGTA*
Ga0137418_1058420223300015241Vadose Zone SoilQVKQLQLTAEMYASSRELRTWCDRNRNRVYIPEWLLEKWDITVDAIFSGTA*
Ga0137403_1000601633300015264Vadose Zone SoilMYTSSPELRIWCKRNRNRLYIPEWLLEEWGITVDQNFFGAAA*
Ga0182039_1172409913300016422SoilGLRTPDYVGSLELKRWCERNRNRVYIPEWLLKEWEMLVDLNFMAA
Ga0181511_139459123300016702PeatlandVRQLQLTAELYISSRELRAWCEQNRNRRYVPELLLKAWGITVDSSFSDAA
Ga0187802_1001342833300017822Freshwater SedimentMYISSRELRIWCERNRNRVYIPEWLLQEWDITVDAIFSGAA
Ga0187818_1034029513300017823Freshwater SedimentETYTCSRDLRAWCEQNRNRLYVPEWLLEEWGITVDLNFGAVARPNHANNS
Ga0187825_1003946513300017930Freshwater SedimentLHLAPEKYASSRELRLWCEQNRNRVYVPEWLLAEWGIAVDALPSDAA
Ga0187801_1004188913300017933Freshwater SedimentLHLTAGMYASSRELRAWCERNKNRCYVPEWLLKEWGITVDINFTAVA
Ga0187819_1079538013300017943Freshwater SedimentDLRAWCEQNRNRLYVPEWLLEEWGITVDLNFGAVARPNHANNS
Ga0187879_1050455023300017946PeatlandYTSSATLHAWCEQNKNRRYVPEWLLAEWCITVDTYFSDAA
Ga0187822_1019441113300017994Freshwater SedimentAKRLHLGPEGYASSIELRLWCERNRNRVYVPEWLLQEWGISVDDLSSGAA
Ga0187804_1011975123300018006Freshwater SedimentSRDLRAWCEQNRNRLYVPEWLLEEWGITVDLNFGAVARPNHANNS
Ga0187884_1009378543300018009PeatlandLYISSRELRAWCEQNRNRRYVPELLLKAWGITVDASFSDAA
Ga0187810_1012306723300018012Freshwater SedimentAWCEQNRNRLYVPEWLLEEWGITVDLNFGAVARPNHANNS
Ga0187810_1046650813300018012Freshwater SedimentMYTSSVELRTWCEQNRNRLYVPEWLLEEWGITVELNFTAVA
Ga0208037_100514853300025448PeatlandRQLQLTAELYISSRELRAWCEQNRNRRYVPELLLKAWGITVDASFSDAA
Ga0207684_1063871333300025910Corn, Switchgrass And Miscanthus RhizosphereQLTAGMYTSSAELRAWCEQNRNRCYVPEWLLEEWGITVDLNFSAAA
Ga0207646_1058227713300025922Corn, Switchgrass And Miscanthus RhizosphereTYSSSLELHAWCEQNRNRLYVPEWLLEEWGITVDLTFGAVA
Ga0207646_1112885413300025922Corn, Switchgrass And Miscanthus RhizosphereGMYTSSRELHTWCERNRNRFYIPEWLLEEWGITVDLNFSAAA
Ga0207646_1142769223300025922Corn, Switchgrass And Miscanthus RhizosphereMYTSSRELRIWCDRNRNRVYIPEWLLEKWDITVDAIFSGAA
Ga0207700_1164698513300025928Corn, Switchgrass And Miscanthus RhizosphereARLRIWCEQYRNRVDVPEWLLEEWGIRVDPMFSEVA
Ga0247846_102068443300026474SoilTYTYSRDLRAWCEQNRNRLYVPEWLLEEWGITVDLNFGAVARPNHANNS
Ga0209648_1026893813300026551Grasslands SoilMQLTAEMYTSSRELRIWCEQNRNRVYIPEWLLREWDITVDAIFSGAA
Ga0209648_1036800213300026551Grasslands SoilMYASSVELRAWCEQNRNRIYIPEWLLQEWDITVDLGFNDAARPPPLE
Ga0209332_107377823300027439Forest SoilQLTAGMYASSAELRAWCEQNRNRLYVPEWLLEEWGITVDPTFDAAA
Ga0208199_112489413300027497Peatlands SoilLRVTQLQLTPEMYASSAELWTWCQQNKNRVYIPEWLLAEWLITVDPTFSDAA
Ga0209166_1018781913300027857Surface SoilVASRELRRWCDRNRNRIYIPEWLLREWGMEVEGIYSGVA
Ga0209701_1034644723300027862Vadose Zone SoilAGTYTSSLELRVWCEQNRNRCYVPEWLLEEWLITVDPNFSAVA
Ga0209283_1056683313300027875Vadose Zone SoilSRELRTWCDRNRNRVYIPEWLLEKWDITVDAIFSGTA
Ga0209283_1088604413300027875Vadose Zone SoilELRTWCEQNRNRIDVPEWLLKEWDITVDANFCGAA
Ga0209526_1031378313300028047Forest SoilAPEMYISSVELRIWCEQNRNRIYIPEWLLKEWGITVDLGFNDAA
Ga0137415_1092711723300028536Vadose Zone SoilTLGMYTSSVELRTWCKRNRNVPEWLLEEWGITVDPYFSGAA
Ga0308309_1078748323300028906SoilLRLTPEMYASSLELRIWCEQNRNRRYVPESLLAEWRITVDLHFSYAA
Ga0311368_1043348213300029882PalsaDMYTSSAALRAWCEQNKNRVFIPEWLLKELCIAVDAE
Ga0308175_10208887813300031938SoilELRLWCAQNRNRVYVPEWLLQEWHLTVEPTHSGAV
Ga0307471_10276271713300032180Hardwood Forest SoilVPAEFEIQVRELELTPEMYVGSRELKNWCKLNRNRVYIPEWLLRKWDISVDLNFSEAA
Ga0307472_10205774213300032205Hardwood Forest SoilSQLRLTARMYASSAELRAWCEENRNRLYVPEWLLEEWGITVDLSFDAAA
Ga0335080_1208858423300032828SoilLSAALRTWCKLNRNRVYIPEWLLEEWGLEVNVGFSGL


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