Metagenome / Metatranscriptome Family F101556

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F101556
Family Type	Metagenome / Metatranscriptome
Number of Sequences	102
Average Sequence Length	58 residues
Representative Sequence	LGGASRLRPFYQLMLAQESGEWKTASDLAAQLHLAESDVAECYWQAMQWARQVSSGV
Number of Associated Samples	88
Number of Associated Scaffolds	102

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	5.88 %
% of genes near scaffold ends (potentially truncated)	95.10 %
% of genes from short scaffolds (< 2000 bps)	85.29 %
Associated GOLD sequencing projects	84
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.71

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (86.275 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (15.686 % of family members)
Environment Ontology (ENVO)	Unclassified (27.451 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (64.706 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 54.12% β-sheet: 0.00% Coil/Unstructured: 45.88%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.71
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.71
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SCOP family	SCOP domain	Representative PDB	TM-score
c.55.1.1: Actin/HSP70	d2zgya2	2zgy	0.71196
a.4.1.9: Tetracyclin repressor-like, N-terminal domain	d2hkua1	2hku	0.68173
d.142.1.0: automated matches	d3tqta2	3tqt	0.67964
a.4.1.9: Tetracyclin repressor-like, N-terminal domain	d2fd5a1	2fd5	0.67834
a.4.1.9: Tetracyclin repressor-like, N-terminal domain	d2g7sa1	2g7s	0.64633

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 102 Family Scaffolds
PF00903	Glyoxalase	9.80
PF03745	DUF309	8.82
PF01584	CheW	8.82
PF00072	Response_reg	3.92
PF05036	SPOR	2.94
PF12681	Glyoxalase_2	1.96
PF00999	Na_H_Exchanger	1.96
PF01230	HIT	1.96
PF08282	Hydrolase_3	0.98
PF02518	HATPase_c	0.98
PF00691	OmpA	0.98
PF12543	DUF3738	0.98
PF00248	Aldo_ket_red	0.98
PF00563	EAL	0.98
PF05227	CHASE3	0.98
PF06127	Mpo1-like	0.98
PF13620	CarboxypepD_reg	0.98
PF02771	Acyl-CoA_dh_N	0.98
PF00578	AhpC-TSA	0.98
PF02737	3HCDH_N	0.98
PF04357	TamB	0.98
PF12729	4HB_MCP_1	0.98
PF14520	HHH_5	0.98

COG ID	Name	Functional Category	% Frequency in 102 Family Scaffolds
COG1547	Predicted metal-dependent hydrolase	Function unknown [S]	8.82
COG0475	Kef-type K+ transport system, membrane component KefB	Inorganic ion transport and metabolism [P]	1.96
COG4651	Predicted Kef-type K+ transport protein, K+/H+ antiporter domain	Inorganic ion transport and metabolism [P]	1.96
COG3263	NhaP-type Na+/H+ and K+/H+ antiporter with C-terminal TrkAC and CorC domains	Energy production and conversion [C]	1.96
COG3004	Na+/H+ antiporter NhaA	Energy production and conversion [C]	1.96
COG0025	NhaP-type Na+/H+ or K+/H+ antiporter	Inorganic ion transport and metabolism [P]	1.96
COG1960	Acyl-CoA dehydrogenase related to the alkylation response protein AidB	Lipid transport and metabolism [I]	0.98
COG5001	Cyclic di-GMP metabolism protein, combines GGDEF and EAL domains with a 6TM membrane domain	Signal transduction mechanisms [T]	0.98
COG4943	Redox-sensing c-di-GMP phosphodiesterase, contains CSS-motif and EAL domains	Signal transduction mechanisms [T]	0.98
COG4539	2-hydroxy fatty acid dioxygenase MPO1 (alpha-oxidation of fatty acids)	Lipid transport and metabolism [I]	0.98
COG3769	Mannosyl-3-phosphoglycerate phosphatase YedP/MpgP, HAD superfamily	Carbohydrate transport and metabolism [G]	0.98
COG3434	c-di-GMP phosphodiesterase YuxH/PdeH, contains EAL and HDOD domains	Signal transduction mechanisms [T]	0.98
COG2911	Phospholipid transport to the outer membrane protein TamB	Cell wall/membrane/envelope biogenesis [M]	0.98
COG2217	Cation-transporting P-type ATPase	Inorganic ion transport and metabolism [P]	0.98
COG2200	EAL domain, c-di-GMP-specific phosphodiesterase class I (or its enzymatically inactive variant)	Signal transduction mechanisms [T]	0.98
COG2084	3-hydroxyisobutyrate dehydrogenase or related beta-hydroxyacid dehydrogenase	Lipid transport and metabolism [I]	0.98
COG1877	Trehalose-6-phosphate phosphatase	Carbohydrate transport and metabolism [G]	0.98
COG1748	Saccharopine dehydrogenase, NADP-dependent	Amino acid transport and metabolism [E]	0.98
COG1250	3-hydroxyacyl-CoA dehydrogenase	Lipid transport and metabolism [I]	0.98
COG1004	UDP-glucose 6-dehydrogenase	Cell wall/membrane/envelope biogenesis [M]	0.98
COG0677	UDP-N-acetyl-D-mannosaminuronate dehydrogenase	Cell wall/membrane/envelope biogenesis [M]	0.98
COG0561	Hydroxymethylpyrimidine pyrophosphatase and other HAD family phosphatases	Coenzyme transport and metabolism [H]	0.98
COG0560	Phosphoserine phosphatase	Amino acid transport and metabolism [E]	0.98
COG0287	Prephenate dehydrogenase	Amino acid transport and metabolism [E]	0.98
COG0240	Glycerol-3-phosphate dehydrogenase	Energy production and conversion [C]	0.98

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	86.27 %
Unclassified	root	N/A	13.73 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	86.27 %
Unclassified	root	N/A	13.73 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	86.27 %
Unclassified	root	N/A	13.73 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	66.67 %
Unclassified	root	N/A	13.73 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.96 %

Name	Rank	Taxonomy	Distribution
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	30.39 %
Unclassified	root	N/A	13.73 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	11.76 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	0.98 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	30.39 %
Unclassified	root	N/A	13.73 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	10.78 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.98 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	30.39 %
Unclassified	root	N/A	13.73 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	10.78 %
Desulfobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales	0.98 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	30.39 %
Unclassified	root	N/A	13.73 %
Candidatus Koribacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	1.96 %
Desulfobacterales incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacterales incertae sedis	0.98 %
Candidatus Sulfotelmatobacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter	0.98 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	30.39 %
Unclassified	root	N/A	13.73 %
Candidatus Desulfatibia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacterales incertae sedis → Candidatus Desulfatibia	0.98 %
unclassified Candidatus Sulfotelmatobacter	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → unclassified Candidatus Sulfotelmatobacter	0.98 %
Candidatus Koribacter versatilis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	0.98 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	30.39 %
Unclassified	root	N/A	13.73 %
Candidatus Desulfatibia profunda	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacterales incertae sedis → Candidatus Desulfatibia → Candidatus Desulfatibia profunda	0.98 %
Candidatus Sulfotelmatobacter sp. SbA7	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → unclassified Candidatus Sulfotelmatobacter → Candidatus Sulfotelmatobacter sp. SbA7	0.98 %
Candidatus Koribacter versatilis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	0.98 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001082\|JGI12664J13189_1002804	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	1726	Open in IMG/M
3300001356\|JGI12269J14319_10306028	All Organisms → cellular organisms → Bacteria	571	Open in IMG/M
3300001593\|JGI12635J15846_10797743	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	541	Open in IMG/M
3300002245\|JGIcombinedJ26739_101358038	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	603	Open in IMG/M
3300002245\|JGIcombinedJ26739_101589476	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	551	Open in IMG/M
3300002908\|JGI25382J43887_10191483	All Organisms → cellular organisms → Bacteria	993	Open in IMG/M
3300004091\|Ga0062387_100103305	All Organisms → cellular organisms → Bacteria	1538	Open in IMG/M
3300004091\|Ga0062387_100347562	All Organisms → cellular organisms → Bacteria	977	Open in IMG/M
3300004092\|Ga0062389_100077312	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	2826	Open in IMG/M
3300004152\|Ga0062386_101557520	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	551	Open in IMG/M
3300004477\|Ga0068971_1436276	All Organisms → cellular organisms → Bacteria	701	Open in IMG/M
3300004635\|Ga0062388_102741491	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	519	Open in IMG/M
3300005180\|Ga0066685_10131086	All Organisms → cellular organisms → Bacteria	1694	Open in IMG/M
3300005180\|Ga0066685_10354456	All Organisms → cellular organisms → Bacteria	1018	Open in IMG/M
3300005334\|Ga0068869_100112867	All Organisms → cellular organisms → Bacteria	2069	Open in IMG/M
3300005541\|Ga0070733_10370816	All Organisms → cellular organisms → Bacteria	951	Open in IMG/M
3300005602\|Ga0070762_10040504	All Organisms → cellular organisms → Bacteria	2532	Open in IMG/M
3300005610\|Ga0070763_10674801	All Organisms → cellular organisms → Bacteria	604	Open in IMG/M
3300005842\|Ga0068858_100155053	All Organisms → cellular organisms → Bacteria	2154	Open in IMG/M
3300005921\|Ga0070766_10130733	All Organisms → cellular organisms → Bacteria	1518	Open in IMG/M
3300006176\|Ga0070765_100904866	All Organisms → cellular organisms → Bacteria	834	Open in IMG/M
3300006176\|Ga0070765_101298743	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	686	Open in IMG/M
3300009088\|Ga0099830_11219012	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	625	Open in IMG/M
3300009137\|Ga0066709_100826137	All Organisms → cellular organisms → Bacteria → Acidobacteria	1345	Open in IMG/M
3300009700\|Ga0116217_11041075	All Organisms → cellular organisms → Bacteria → Proteobacteria	500	Open in IMG/M
3300009764\|Ga0116134_1162154	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	786	Open in IMG/M
3300011120\|Ga0150983_13070008	Not Available	715	Open in IMG/M
3300012356\|Ga0137371_10758621	All Organisms → cellular organisms → Bacteria → Acidobacteria	741	Open in IMG/M
3300012361\|Ga0137360_11813827	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	516	Open in IMG/M
3300014164\|Ga0181532_10587804	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacterales incertae sedis → Candidatus Desulfatibia → Candidatus Desulfatibia profunda	605	Open in IMG/M
3300014201\|Ga0181537_10235095	All Organisms → cellular organisms → Bacteria	1259	Open in IMG/M
3300014501\|Ga0182024_10008008	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	22528	Open in IMG/M
3300014657\|Ga0181522_10319289	All Organisms → cellular organisms → Bacteria → Acidobacteria	923	Open in IMG/M
3300017933\|Ga0187801_10300429	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	653	Open in IMG/M
3300017943\|Ga0187819_10424711	Not Available	762	Open in IMG/M
3300017943\|Ga0187819_10748038	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	550	Open in IMG/M
3300017955\|Ga0187817_10018744	All Organisms → cellular organisms → Bacteria → Acidobacteria	4082	Open in IMG/M
3300017961\|Ga0187778_10111771	All Organisms → cellular organisms → Bacteria	1704	Open in IMG/M
3300017961\|Ga0187778_10770187	Not Available	655	Open in IMG/M
3300017973\|Ga0187780_10012498	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	6234	Open in IMG/M
3300018007\|Ga0187805_10526627	Not Available	555	Open in IMG/M
3300018012\|Ga0187810_10266182	Not Available	705	Open in IMG/M
3300018034\|Ga0187863_10732839	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	559	Open in IMG/M
3300018040\|Ga0187862_10887807	Not Available	511	Open in IMG/M
3300018042\|Ga0187871_10409349	All Organisms → cellular organisms → Bacteria → Acidobacteria	749	Open in IMG/M
3300018043\|Ga0187887_10825117	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	548	Open in IMG/M
3300018086\|Ga0187769_10107949	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2006	Open in IMG/M
3300020170\|Ga0179594_10159604	All Organisms → cellular organisms → Bacteria → Acidobacteria	836	Open in IMG/M
3300020579\|Ga0210407_10253438	All Organisms → cellular organisms → Bacteria → Acidobacteria	1371	Open in IMG/M
3300020582\|Ga0210395_10041196	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	3381	Open in IMG/M
3300021181\|Ga0210388_10867424	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → unclassified Candidatus Sulfotelmatobacter → Candidatus Sulfotelmatobacter sp. SbA7	779	Open in IMG/M
3300021403\|Ga0210397_10198919	All Organisms → cellular organisms → Bacteria → Acidobacteria	1431	Open in IMG/M
3300021403\|Ga0210397_10751156	Not Available	752	Open in IMG/M
3300021404\|Ga0210389_10123143	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2003	Open in IMG/M
3300021406\|Ga0210386_10296654	Not Available	1385	Open in IMG/M
3300021407\|Ga0210383_11068953	Not Available	682	Open in IMG/M
3300021433\|Ga0210391_10341595	All Organisms → cellular organisms → Bacteria → Acidobacteria	1174	Open in IMG/M
3300021474\|Ga0210390_11349006	Not Available	570	Open in IMG/M
3300021477\|Ga0210398_10783495	All Organisms → cellular organisms → Bacteria → Acidobacteria	768	Open in IMG/M
3300021478\|Ga0210402_11624056	All Organisms → cellular organisms → Bacteria → Acidobacteria	573	Open in IMG/M
3300022531\|Ga0242660_1085514	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	750	Open in IMG/M
3300022532\|Ga0242655_10130566	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	719	Open in IMG/M
3300022724\|Ga0242665_10140358	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	755	Open in IMG/M
3300022726\|Ga0242654_10111465	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	872	Open in IMG/M
3300022731\|Ga0224563_1006890	All Organisms → cellular organisms → Bacteria → Acidobacteria	864	Open in IMG/M
3300023030\|Ga0224561_1012448	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	684	Open in IMG/M
3300026315\|Ga0209686_1163595	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	648	Open in IMG/M
3300026538\|Ga0209056_10413950	All Organisms → cellular organisms → Bacteria → Acidobacteria	813	Open in IMG/M
3300027047\|Ga0208730_1032796	Not Available	604	Open in IMG/M
3300027591\|Ga0209733_1130692	All Organisms → cellular organisms → Bacteria → Acidobacteria	619	Open in IMG/M
3300027676\|Ga0209333_1018866	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1973	Open in IMG/M
3300027698\|Ga0209446_1143478	Not Available	617	Open in IMG/M
3300027783\|Ga0209448_10031417	All Organisms → cellular organisms → Bacteria → Acidobacteria	1776	Open in IMG/M
3300027812\|Ga0209656_10324617	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	706	Open in IMG/M
3300027842\|Ga0209580_10209576	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	967	Open in IMG/M
3300027867\|Ga0209167_10082941	All Organisms → cellular organisms → Bacteria → Acidobacteria	1618	Open in IMG/M
3300027879\|Ga0209169_10260075	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	910	Open in IMG/M
3300027879\|Ga0209169_10288089	All Organisms → cellular organisms → Bacteria → Acidobacteria	862	Open in IMG/M
3300027884\|Ga0209275_10020907	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2926	Open in IMG/M
3300027895\|Ga0209624_10172814	All Organisms → cellular organisms → Bacteria → Acidobacteria	1433	Open in IMG/M
3300028866\|Ga0302278_10074345	All Organisms → cellular organisms → Bacteria	1983	Open in IMG/M
3300028882\|Ga0302154_10259729	Not Available	864	Open in IMG/M
3300028906\|Ga0308309_10782712	All Organisms → cellular organisms → Bacteria → Acidobacteria	829	Open in IMG/M
3300029999\|Ga0311339_11178563	Not Available	703	Open in IMG/M
3300030760\|Ga0265762_1012422	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1527	Open in IMG/M
3300030760\|Ga0265762_1036910	All Organisms → cellular organisms → Bacteria → Acidobacteria	945	Open in IMG/M
3300030760\|Ga0265762_1090280	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	667	Open in IMG/M
3300030874\|Ga0265742_1026094	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	517	Open in IMG/M
3300030879\|Ga0265765_1029893	All Organisms → cellular organisms → Bacteria → Acidobacteria	691	Open in IMG/M
3300031090\|Ga0265760_10321728	All Organisms → cellular organisms → Bacteria → Acidobacteria	550	Open in IMG/M
3300031708\|Ga0310686_108537951	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1282	Open in IMG/M
3300031708\|Ga0310686_117435467	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	613	Open in IMG/M
3300031718\|Ga0307474_10072906	All Organisms → cellular organisms → Bacteria → Acidobacteria	2551	Open in IMG/M
3300031718\|Ga0307474_10109848	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2066	Open in IMG/M
3300031718\|Ga0307474_10398107	All Organisms → cellular organisms → Bacteria → Acidobacteria	1071	Open in IMG/M
3300031754\|Ga0307475_10392393	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1115	Open in IMG/M
3300032160\|Ga0311301_10328074	All Organisms → cellular organisms → Bacteria	2419	Open in IMG/M
3300032783\|Ga0335079_10067551	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	4073	Open in IMG/M
3300032892\|Ga0335081_12003877	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	618	Open in IMG/M
3300032892\|Ga0335081_12055368	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	607	Open in IMG/M
3300032955\|Ga0335076_10739067	All Organisms → cellular organisms → Bacteria → Acidobacteria	865	Open in IMG/M
3300033004\|Ga0335084_11381501	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	699	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	98.04%
Host-Associated	Host-Associated	1.96%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	76.47%
Aquatic	Environmental → Aquatic	21.57%
Plants	Host-Associated → Plants	1.96%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	73.53%
Freshwater	Environmental → Aquatic → Freshwater	21.57%
Peat	Environmental → Terrestrial → Peat	2.94%
Rhizoplane	Host-Associated → Plants → Rhizoplane	1.96%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	45.10%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	21.57%
Loam	Environmental → Terrestrial → Soil → Loam	18.63%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	9.80%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	2.94%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	1.96%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	20.59%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	19.61%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	17.65%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	14.71%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	8.82%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	5.88%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	4.90%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	2.94%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	1.96%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	0.98%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	0.98%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.98%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	15.69%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	9.80%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	8.82%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	8.82%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	7.84%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	5.88%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	4.90%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	3.92%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	3.92%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	3.92%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	3.92%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	3.92%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	2.94%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	2.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	2.94%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	1.96%
Bog	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog	1.96%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	0.98%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost	0.98%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.98%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	0.98%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.98%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.98%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001082	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_O3	Environmental	Open in IMG/M
3300001356	Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007	Environmental	Open in IMG/M
3300001593	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300002908	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_40cm	Environmental	Open in IMG/M
3300004091	Coassembly of ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300004092	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300004152	Coassembly of ECP12_OM1, ECP12_OM2, ECP12_OM3	Environmental	Open in IMG/M
3300004477	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 65 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004635	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300005180	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134	Environmental	Open in IMG/M
3300005334	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2	Host-Associated	Open in IMG/M
3300005541	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1	Environmental	Open in IMG/M
3300005602	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2	Environmental	Open in IMG/M
3300005610	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3	Environmental	Open in IMG/M
3300005842	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2	Host-Associated	Open in IMG/M
3300005921	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300009088	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG	Environmental	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009700	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_4_PS metaG	Environmental	Open in IMG/M
3300009764	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_19_40	Environmental	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300012356	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_40_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300014164	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_30_metaG	Environmental	Open in IMG/M
3300014201	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_10_metaG	Environmental	Open in IMG/M
3300014501	Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300014657	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_10_metaG	Environmental	Open in IMG/M
3300017933	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_1	Environmental	Open in IMG/M
3300017943	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_4	Environmental	Open in IMG/M
3300017955	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_2	Environmental	Open in IMG/M
3300017961	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_20_MG	Environmental	Open in IMG/M
3300017973	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_20_MG	Environmental	Open in IMG/M
3300018007	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_5	Environmental	Open in IMG/M
3300018012	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_5	Environmental	Open in IMG/M
3300018034	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_11_10	Environmental	Open in IMG/M
3300018040	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_150	Environmental	Open in IMG/M
3300018042	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_10	Environmental	Open in IMG/M
3300018043	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_7_10	Environmental	Open in IMG/M
3300018086	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_10_MG	Environmental	Open in IMG/M
3300020170	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad1_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020582	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O	Environmental	Open in IMG/M
3300021181	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O	Environmental	Open in IMG/M
3300021403	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O	Environmental	Open in IMG/M
3300021404	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-O	Environmental	Open in IMG/M
3300021406	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O	Environmental	Open in IMG/M
3300021407	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O	Environmental	Open in IMG/M
3300021433	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-O	Environmental	Open in IMG/M
3300021474	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O	Environmental	Open in IMG/M
3300021477	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-O	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300022531	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-28-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022532	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-4-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022724	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-17-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022726	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-30-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022731	Soil microbial communities from Bohemian Forest, Czech Republic ? CSU4	Environmental	Open in IMG/M
3300023030	Soil microbial communities from Bohemian Forest, Czech Republic ? CSU2	Environmental	Open in IMG/M
3300026315	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_126 (SPAdes)	Environmental	Open in IMG/M
3300026538	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114 (SPAdes)	Environmental	Open in IMG/M
3300027047	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF042 (SPAdes)	Environmental	Open in IMG/M
3300027591	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M1 (SPAdes)	Environmental	Open in IMG/M
3300027676	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_O3 (SPAdes)	Environmental	Open in IMG/M
3300027698	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP04_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027783	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027812	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027842	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027867	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027879	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4 (SPAdes)	Environmental	Open in IMG/M
3300027884	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2 (SPAdes)	Environmental	Open in IMG/M
3300027895	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O1 (SPAdes)	Environmental	Open in IMG/M
3300028866	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Bog_N3_2	Environmental	Open in IMG/M
3300028882	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_N2_3	Environmental	Open in IMG/M
3300028906	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)	Environmental	Open in IMG/M
3300029999	I_Palsa_E3 coassembly	Environmental	Open in IMG/M
3300030760	Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI4 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030874	Metatranscriptome of soil microbial communities from Maridalen valley, Oslo, Norway - NSI4 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030879	Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZU1 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031090	Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI1 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031718	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05	Environmental	Open in IMG/M
3300031754	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515	Environmental	Open in IMG/M
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental	Open in IMG/M
3300032783	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3	Environmental	Open in IMG/M
3300032892	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.5	Environmental	Open in IMG/M
3300032955	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.5	Environmental	Open in IMG/M
3300033004	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.4	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12664J13189_10028045	3300001082	Forest Soil	KSVLLGGASRLRLFYQLMLAQESGEWKTASDLTSRLHITESEVAECYWQAMQWAREVSRGT*
JGI12269J14319_103060282	3300001356	Peatlands Soil	SRLRPFYQLMLAQESGEWVAVKELTAELHLSEGDVSASYWQAMQWARQVSSGA*
JGI12635J15846_107977432	3300001593	Forest Soil	VPVDQESKTVLLGGAGRLGPFYRLMLAQESGDWQTASDLARQLHLSESEVAEKYWEAMQWARQVSGG*
JGIcombinedJ26739_1013580381	3300002245	Forest Soil	VPIDQETKALLLGGTGRLRPLYQLMLARESGDWQNAAELSKSLHLSDGEVAEAYWSAMQWARQVSAG*
JGIcombinedJ26739_1015894761	3300002245	Forest Soil	LMLARESGNWKAVSRLSAQLGLGENDVAELYWQAMQWSRQVSAGS*
JGI25382J43887_101914831	3300002908	Grasslands Soil	GAASPLRPLYQLMLARESGEWQDTTHLTRTMRLSESEVAEVYWQAMQWARQVNAE*
Ga0062387_1001033053	3300004091	Bog Forest Soil	LRPFYQLMLAQESGEWKAVSELTTQLQLNESDVSESYWQAMQWARQVGAGG*
Ga0062387_1003475622	3300004091	Bog Forest Soil	LGGASTLRPLYQLMLARESGDWENTGILAKQLHLTESEVAESYWQAMQWARQVSGG*
Ga0062389_1000773121	3300004092	Bog Forest Soil	SPFYQLMLAQESGEWETARELAQQLHLSESEVAEKYWDAMQWARQVSAG*
Ga0062386_1015575201	3300004152	Bog Forest Soil	IDQESKAVLLGGASRLRPFYQLMLAQESGEWKTASDLAAQLHLAESDVAECYWQAMQWARQVSSGV*
Ga0068971_14362761	3300004477	Peatlands Soil	PFYQLMLAQESGEWKTASDLTSQLHLKESDVAECYWQAMHWAREVTGGS*
Ga0062388_1027414911	3300004635	Bog Forest Soil	RPFYQLMLAQESGEWKTASELAVQLHLNEGEVAECYWQAMQWARQVSSGS*
Ga0066685_101310862	3300005180	Soil	LLGGASRLQPLYRLMLALESGEWQNRSELAKTMRLSESEVTEAHWQAMQWAREVSSG*
Ga0066685_103544562	3300005180	Soil	LLGGASRLQPLYRLMLALESGEWQNRSELAKTMRLSESEVAEAHWQAMQWAREVSSG*
Ga0068869_1001128671	3300005334	Miscanthus Rhizosphere	VLLGGASRLRPLYQLMLAQESGEWEQTAELAAQLGLAESDVAEEYFQAVIWARGVNAP*
Ga0070733_103708162	3300005541	Surface Soil	NVPIDQETKSVLLGGASRLRPFYQLMLAQESGEWKTAGELVTQLHLAESDVGACYWQAMQWAREVSGGG*
Ga0070762_100405041	3300005602	Soil	DQESKAVLLGGASRLRPFYQLMLAQESGEWETARELAGQLHLSESEVAEKYWEAMQWARQVSGG*
Ga0070763_106748011	3300005610	Soil	LRPFYQLMLTQEAGDWKSVSELTRQLHLNESDVATFYWQAMQWAREVTAGT*
Ga0068858_1001550531	3300005842	Switchgrass Rhizosphere	SKAVLLGGASRLRPLYQLMLAQESGEWEQTTELAAQLGLAESDVAEEYFQAVIWARGVNAP*
Ga0070766_101307331	3300005921	Soil	VLLGDASRLLPFYQLMPAQESGEWKTAIELAAQLHLAESEVAECYWQAMQWARQVSSGTLAMP*
Ga0070765_1009048663	3300006176	Soil	LLGVTSRLRPFYQLMLAQESGAWTAVQELATQLQLSETEVSEAYWQAMQWARQVSAGT*
Ga0070765_1012987432	3300006176	Soil	LRPFYQLMLARESGNWKAVSRLSAQLGLGENDVAELYWQAMQWSRQVSAGS*
Ga0099830_112190121	3300009088	Vadose Zone Soil	QVLDNVPIDQESKSVLLGAASRLRPFYQLMLAQESGDWKVAGELAGELHLSEDDVAEFSWRAMQWARQVSAGT*
Ga0066709_1008261372	3300009137	Grasslands Soil	LETKTVLLGGGSRLRPVYQLVLAQESGDWQRSAELGRSLNLIETDIADLHWQAMQWARQVSSE*
Ga0116217_110410751	3300009700	Peatlands Soil	LSPFYQLMLAQESGEWETASDLTSQLHLKESDVAECYWQAMHWAREVTGGS*
Ga0116134_11621542	3300009764	Peatland	RLLPFYQLMLAQEAGEWKTARELTSQLQLSESDVAESQWQAMQWARQVSAGT*
Ga0150983_130700081	3300011120	Forest Soil	PFYQLMLAQESGEWKTASELTNQLHLNESDVAGCHWQAMQWAREVSGGS*
Ga0137371_107586211	3300012356	Vadose Zone Soil	KAVLSGAASPLRPLYQLMLARESGEWQDTTHLTRTMRLSESEVAEVYWQAMQWARQVNAE
Ga0137360_118138271	3300012361	Vadose Zone Soil	NVRIDQESTSVLLGGASRLRPFYQLMLAQECGEWKVASELASQLHLSEDDVAEFSWRAMQWARQVSAGI*
Ga0181532_105878041	3300014164	Bog	KAVLLGGPSHLRPFYQLMVARESGDWKSVGELTGELHLDEDDVAGLYWQAMHWARKVSAGA*
Ga0181537_102350953	3300014201	Bog	IDQESKAVLLGGASRLQPFYRLMLAQESGEWKTVSELAGQLHLKESDVAEAYWQALQWARQVSAGT*
Ga0182024_100080081	3300014501	Permafrost	LLGGASRLRPFYQLMLAQESGEWKTASELASQLHLGDSDVAGAYWQAMQWAREVSGGS*
Ga0181522_103192892	3300014657	Bog	FYQLMLAQESGEWKTATDLTNQLHLTETEVAESYWQAMRWAREVSSGT*
Ga0187801_103004292	3300017933	Freshwater Sediment	QLMLAQESGEWETASQLTSQLHLIESDVAECYWKAMQWAREVSGGG
Ga0187819_104247111	3300017943	Freshwater Sediment	VCVDQETKAALLGGPSRWRPFYQLILSQESGKWQTTSELAHQLDLSESDIAEKYWEAVRWAQQVTAR
Ga0187819_107480381	3300017943	Freshwater Sediment	VLLGGASRLRPLYQLMLARESGEWEHAAELGKQLRLGESEVAESHWQAMQWARQMNAGA
Ga0187817_100187444	3300017955	Freshwater Sediment	VCVDQETKAALLGGPSRWRPFYQLILPQESGEWQTTSELAHQLHLSESDIAEKYWEAVRWAQQVTAR
Ga0187778_101117711	3300017961	Tropical Peatland	KAVLLGGTSRLRVLYQLMLAQEAGDWHATSELARQLHLSEIEVAQCYWDAIRWAQQVAAR
Ga0187778_107701872	3300017961	Tropical Peatland	ESVCVDQETKAALLGGPSRWRPFYQLILSQESGKWQTTSELAHQLHLSESDIAEKYWEAVRWAQQVTAR
Ga0187780_100124981	3300017973	Tropical Peatland	GASRLRPFYQLMLAQESGEWQSVSELAGELHLAENEVAECHWEAMRWAKEVTSASAS
Ga0187805_105266271	3300018007	Freshwater Sediment	GGASRLRPFYQLMLAQESGEWRTASDLTSQLHLRESDVGECYWQAMQWAREVTGGG
Ga0187810_102661821	3300018012	Freshwater Sediment	KSLLLGGASRLRPFYQLMLAQESGEWQSVGQLARELHLMESEVAECHWQAMRWAQEVTSASAS
Ga0187863_107328391	3300018034	Peatland	RLRPFYQLMLAQESGEWKTATDLTNQLHLTETEVAESYWQAMRWAREVSSGT
Ga0187862_108878071	3300018040	Peatland	MRQVLDNVPIDQESKSVLLGGASRLLPFYQLMLAQEAGEWKTARELTSQLQLSESDVAESQWQAMQWARQVSAGT
Ga0187871_104093491	3300018042	Peatland	CKAVLLGATSRLRPFYQLVLAQESGEWAAVRDLTTELHLSEADVSVAYWQAMQWARQVSSGAE
Ga0187887_108251171	3300018043	Peatland	MRQVLDNVPIDQESKAVLLGGASRLRPFYQLMLAQESGEWKAVSDLISQLHLSETDVAESHWQALQWARQVSAGT
Ga0187769_101079494	3300018086	Tropical Peatland	VDHQTRGVLLGGESRLRKFYQLMLAQESGEWQASSELARQLHLSDSEVAEKYWEAVHWAQQVSAR
Ga0179594_101596041	3300020170	Vadose Zone Soil	EVLDNVPLDQGTKAVLSGAASPLRPLYQLMLARESGEWQDTTHLTRTMRLSESEVAEVYWQAMQWARQVNAE
Ga0210407_102534381	3300020579	Soil	LGGASRLRPFYQLMLAQESGEWKTASDLAAQLHLAESDVAECYWQAMQWARQVSSGV
Ga0210395_100411962	3300020582	Soil	LRPFYQLILAQEAGEWKTVSELTRQLHLNESDVATIYWQAMQWAREVTAGT
Ga0210388_108674241	3300021181	Soil	RLRPFYQLILAQEAGEWKTVSELTRQLHLNESDVATIYWQAMQWAREVTAGT
Ga0210397_101989193	3300021403	Soil	PFYQLMLAQESGEWKTASDLAAQLHLAESDVAECYWQAMQWARQVSSGV
Ga0210397_107511561	3300021403	Soil	FFQLMLAQEAGEWKTVSDLTRELHLNETEVATLHWQAMQWAREVTAGT
Ga0210389_101231433	3300021404	Soil	FYQLMLAQESGEWKTASDLAAQLHLAESDVAECYWQAMQWARQVSSGV
Ga0210386_102966541	3300021406	Soil	MESKAALLGGVSSLRPFYQLMLAQESGEWRAVGELSSQLHLSESEVGDAHWQAMQWARQVSAGV
Ga0210383_110689532	3300021407	Soil	PFYQLMLAQESGEWKTAKELTAQLHLNETDVAQCYWQAMQWAREMSAGS
Ga0210391_103415952	3300021433	Soil	SVLLGGASRLRPFYQLMLAQESGEWKTACELAAQLHLAESDDAECYWQAMQWARQVSSGV
Ga0210390_113490062	3300021474	Soil	RLRPFYQLMLAQESGEWQMAGELAGQLQLVEKDVAVCYWQAMQWAREVSGGS
Ga0210398_107834951	3300021477	Soil	IPIDQETKAVLSGGASRLRLFYQLMLAQESGEWKTAADLTSQLHLTESEVAECYWQAMQWAREVSSGT
Ga0210402_116240561	3300021478	Soil	PIDQETKSVLLGGASRLRPFYQLMLAQESGEWKTAAELTAQLHLTESEVAECHWQAMQWARQVSAG
Ga0242660_10855141	3300022531	Soil	TKSVLLGGASRLRPFYQLMLAQESGEWKTASELTSQLHLNDSDVAECHWQAMQWAREVSGGS
Ga0242655_101305661	3300022532	Soil	FYQLMLAQESGEWKTASELTNQLHLKESDVAESYWHAMQWAREVSGGS
Ga0242665_101403581	3300022724	Soil	RLRTFYQLMLAQESGEWKTASELTNQLHLKESDVAESYWHAMQWAREVSGGS
Ga0242654_101114652	3300022726	Soil	LLGGASRLRPFYQLMLAQESGEWKTASELTSQLHLNDSDVAECHWQAMQWAREVSGGS
Ga0224563_10068902	3300022731	Soil	QLMLAQESGEWKTAADLTSQLHLSESEVAESYWQAMRWAREVSSGT
Ga0224561_10124482	3300023030	Soil	IDQETKAVLSGGASRLRLFYQLMLAQESGEWKTAADLTSQLHLSESEVAESYWQAMRWAREVSSGT
Ga0209686_11635951	3300026315	Soil	TEVLGNVPLDQGTKAVLSGAASPLRPLYQLMLARESGEWQDTTHLTRTMRLSESEVAEVYWQAMQWARQVNAK
Ga0209056_104139501	3300026538	Soil	GAASPLRPLYQLMLARESGEWQDTTHLTRTMRLSESEVAEVYWQAMQWARQVNAE
Ga0208730_10327961	3300027047	Forest Soil	RPFYQLMLAQESGEWQMAGELAGQLQLVEKDVAVCYWQAMQWAREVSGGS
Ga0209733_11306922	3300027591	Forest Soil	PFYQLMLAQESGDWKAASALTLQLHLTETDVADAYWEAMQWARQVSTGK
Ga0209333_10188661	3300027676	Forest Soil	LDHIPIDQETKSVLLGGASRLRLFYQLMLAQESGEWKTASDLTSRLHITESEVAECYWQAMQWAREVSRGT
Ga0209446_11434782	3300027698	Bog Forest Soil	GGASRLRPFYQLMLAQEAGEWKTVSELVHQMNLGETDVAALHWQAMQWAREVTAGT
Ga0209448_100314173	3300027783	Bog Forest Soil	LRPFYQLMLAQESGEWKAVSELTTQLQLNESDVSESYWQAMQWARQVGAGG
Ga0209656_103246172	3300027812	Bog Forest Soil	VLLGGASRLRPFYQLMLAQESGEWAAMSELTTQLHLDESVVADCYWQAMQWARDVSAGT
Ga0209580_102095762	3300027842	Surface Soil	LGGASRLRPFYQLMLAQESGEWKTATDLTNQLHLTESDVASSHWQAMQWAKEVSGGS
Ga0209167_100829413	3300027867	Surface Soil	AVLSGGASRLRLFYQLMLAQESGEWKTAADLTSQLHLTEGEVAESYWQAMRWAREVSSGT
Ga0209169_102600751	3300027879	Soil	QLMLARESGNWKAVSRLSAQLGLGENDVAELYWQAMQWSRQVSAGS
Ga0209169_102880892	3300027879	Soil	VLLGGASPLRVFYQLMLAQESGEWRTATDLTSQLHLTESEVAECYWQAMRWAREVSSGT
Ga0209275_100209075	3300027884	Soil	YQLMLAQESGDWKTATGLTSQLHLTESDVADCYWQAMQWAREVSSGT
Ga0209624_101728141	3300027895	Forest Soil	NVPIDHECKAVLLGATSRLRPFYQLMLAQESGDWAAVKELATQLQLSEDDVSASYWQAMQWARQVSSGA
Ga0302278_100743451	3300028866	Bog	ESKAVLLGGASRLQPFYRLMLAQESGEWKTVSELAGQLHLKESDVAEAYWQALQWARQVSAGT
Ga0302154_102597291	3300028882	Bog	AVLLGGASRLQPFYRLMLAQESGEWKTVSELAGQLHLKESDVAEAYWQALQWARQVSAGT
Ga0308309_107827121	3300028906	Soil	KAALLGVTSRLRPFYQLMLAQESGAWTAVQELATQLQLSETEVSEAYWQAMQWARQVSAG
Ga0311339_111785631	3300029999	Palsa	LQPFYRLMLAQESGEWKTVSELAGQLHLKESDVAEAYWQALQWARQVSAGT
Ga0265762_10124222	3300030760	Soil	VESKTVLLGGAGRLRPFYQLMLAQESGEWQAVSELCIQLHLNETDVSGCHWEAMQWARQVTAGTSA
Ga0265762_10369101	3300030760	Soil	GGASRLRLFYQLMLAQESGEWKTAADLTSQLHLTESEVAECYWQAMQWAREVSGGT
Ga0265762_10902801	3300030760	Soil	VLLGGASRLRLFYQLMLAQESGEWKTASDLTSQLHITESEVAECYWQAMQWAREVSSGT
Ga0265742_10260941	3300030874	Soil	DNVPVDQQTKELLLGGASGLRPFYQLMLARESGNWKAVSRLSAQLGLGENDVAELYWQAMQWSRQVSAGS
Ga0265765_10298931	3300030879	Soil	MLAQESGEWKTASDLTSQLHITESEVAECYWQAMQWAREVSSGT
Ga0265760_103217281	3300031090	Soil	LMLAQESGEWAAVKDLTTQLHLNEVEVSAAYWQAMQWARQVSSGAE
Ga0310686_1085379511	3300031708	Soil	MMDVILEIPMSQVLDNVPIDQESKAVLLGGASRLRPFYQLMLAQESGEGKTASELAAPLHLAESEVAERY
Ga0310686_1174354671	3300031708	Soil	PIDQETKSVLLGGASRLRPFYQLMLAQESGEWKTASELTAQLHLSESEVAECYWQAMQWGREMSAGS
Ga0307474_100729061	3300031718	Hardwood Forest Soil	AALLGVTSRLRPFYQLMLAQESGEWTAVKELTTQLQISESDVAAAYWQAMQWARQVSAET
Ga0307474_101098481	3300031718	Hardwood Forest Soil	MLAQESGDWETAGELISQLHLNESEVAECYWQAMQWAREVSGGGS
Ga0307474_103981072	3300031718	Hardwood Forest Soil	RVLENVPVDQESKAVLLGGASRLRPFYQLMLAQESGEWKTAHELAGQLHLSESEVAEKYWEAMQWARQVSGG
Ga0307475_103923933	3300031754	Hardwood Forest Soil	GVTSRLRPFYQLMLAQESGEWTAVKELTTQLQISESDVAAAYWQAMQWARQVSAGR
Ga0311301_103280745	3300032160	Peatlands Soil	LLGGASRLSPFYQLMLAQESGEWKTASDLTSQLHLKESDVAECYWQAMHWAREVTGGS
Ga0335079_100675511	3300032783	Soil	ETRRVLLGGESQLRKFYQLMLAQESGEWQASSELSRQLHLSESEVAEKYWEAVRWAQQVSAT
Ga0335081_120038771	3300032892	Soil	VPVDHETKSVLLGGASRLRPLYQLMLARESGDWENSAELARQLQLNESTVAEAYWNAMQWARQVSGE
Ga0335081_120553681	3300032892	Soil	DQESKAVLLGGASRLRPMYQLMLAQESGEWEAGAELARQLRLKESEVAEAYWDAMQWAKQVSSAS
Ga0335076_107390672	3300032955	Soil	QQIKSVLLGGASPLRPLFQLMLARESGDWESAAQLMRQMHLSESTVAEAYWQAMQWAQQVSG
Ga0335084_113815011	3300033004	Soil	GASRLLPFYQLMMAQESGEWESAHALTRQLQLSESEVAEKYWEAMQWARQVSGG

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F101556

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Structural matches with SCOPe domains

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences