Metagenome Family F101541

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F101541
Family Type	Metagenome
Number of Sequences	102
Average Sequence Length	51 residues
Representative Sequence	MRDAIEFLRTSAEELRELASSAPDISDHLRRLADELDATAADLERGGGIPN
Number of Associated Samples	87
Number of Associated Scaffolds	102

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	22.55 %
% of genes near scaffold ends (potentially truncated)	28.43 %
% of genes from short scaffolds (< 2000 bps)	92.16 %
Associated GOLD sequencing projects	79
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.65

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (53.922 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil (17.647 % of family members)
Environment Ontology (ENVO)	Unclassified (32.353 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (49.020 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 51.90% β-sheet: 0.00% Coil/Unstructured: 48.10%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.65
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.65
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 102 Family Scaffolds
PF02515	CoA_transf_3	16.67
PF08241	Methyltransf_11	8.82
PF01425	Amidase	1.96
PF05988	DUF899	0.98
PF16113	ECH_2	0.98
PF13561	adh_short_C2	0.98
PF00437	T2SSE	0.98
PF02653	BPD_transp_2	0.98
PF04828	GFA	0.98
PF03739	LptF_LptG	0.98
PF02538	Hydantoinase_B	0.98
PF01323	DSBA	0.98
PF13358	DDE_3	0.98

COG ID	Name	Functional Category	% Frequency in 102 Family Scaffolds
COG1804	Crotonobetainyl-CoA:carnitine CoA-transferase CaiB and related acyl-CoA transferases	Lipid transport and metabolism [I]	16.67
COG0146	N-methylhydantoinase B/oxoprolinase/acetone carboxylase, alpha subunit	Amino acid transport and metabolism [E]	1.96
COG0154	Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit or related amidase	Translation, ribosomal structure and biogenesis [J]	1.96
COG0795	Lipopolysaccharide export LptBFGC system, permease protein LptF	Cell wall/membrane/envelope biogenesis [M]	0.98
COG3791	Uncharacterized conserved protein	Function unknown [S]	0.98
COG4312	Predicted dithiol-disulfide oxidoreductase, DUF899 family	General function prediction only [R]	0.98

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	53.92 %
Unclassified	root	N/A	46.08 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	53.92 %
Unclassified	root	N/A	46.08 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	53.92 %
Unclassified	root	N/A	46.08 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	46.08 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	41.18 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	46.08 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	32.35 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1.96 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	46.08 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	22.55 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2.94 %
Enterobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales	0.98 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	46.08 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	22.55 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	0.98 %
Methylocystaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae	0.98 %
Enterobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae	0.98 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	46.08 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	22.55 %
unclassified Methylocystaceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → unclassified Methylocystaceae	0.98 %
Salmonella	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Salmonella	0.98 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	0.98 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	46.08 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	22.55 %
Methylocystaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → unclassified Methylocystaceae → Methylocystaceae bacterium	0.98 %
Salmonella enterica	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Salmonella → Salmonella enterica	0.98 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	0.98 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.98 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000912\|JGI12032J12867_1015098	Not Available	501	Open in IMG/M
3300002245\|JGIcombinedJ26739_100838374	Not Available	800	Open in IMG/M
3300002245\|JGIcombinedJ26739_100912911	Not Available	761	Open in IMG/M
3300004153\|Ga0063455_101436140	All Organisms → cellular organisms → Bacteria	534	Open in IMG/M
3300004157\|Ga0062590_101575764	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	663	Open in IMG/M
3300004479\|Ga0062595_100128829	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1421	Open in IMG/M
3300004479\|Ga0062595_102253217	Not Available	535	Open in IMG/M
3300004643\|Ga0062591_100371581	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1167	Open in IMG/M
3300005175\|Ga0066673_10429162	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	775	Open in IMG/M
3300005176\|Ga0066679_10359073	All Organisms → cellular organisms → Bacteria	953	Open in IMG/M
3300005330\|Ga0070690_100710063	Not Available	773	Open in IMG/M
3300005332\|Ga0066388_100271265	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2339	Open in IMG/M
3300005341\|Ga0070691_10727424	Not Available	598	Open in IMG/M
3300005343\|Ga0070687_100903730	Not Available	633	Open in IMG/M
3300005353\|Ga0070669_101095006	All Organisms → cellular organisms → Bacteria	686	Open in IMG/M
3300005355\|Ga0070671_101135184	Not Available	687	Open in IMG/M
3300005356\|Ga0070674_102018874	Not Available	525	Open in IMG/M
3300005434\|Ga0070709_10601597	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	846	Open in IMG/M
3300005436\|Ga0070713_100515482	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1129	Open in IMG/M
3300005451\|Ga0066681_10710552	All Organisms → cellular organisms → Bacteria → Proteobacteria	611	Open in IMG/M
3300005454\|Ga0066687_10135064	All Organisms → cellular organisms → Bacteria	1288	Open in IMG/M
3300005454\|Ga0066687_10487634	All Organisms → cellular organisms → Bacteria → Proteobacteria	727	Open in IMG/M
3300005454\|Ga0066687_10932199	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	518	Open in IMG/M
3300005458\|Ga0070681_10194946	All Organisms → cellular organisms → Bacteria	1945	Open in IMG/M
3300005458\|Ga0070681_12040840	Not Available	502	Open in IMG/M
3300005468\|Ga0070707_101368575	Not Available	674	Open in IMG/M
3300005535\|Ga0070684_100475829	Not Available	1156	Open in IMG/M
3300005542\|Ga0070732_10384986	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → unclassified Methylocystaceae → Methylocystaceae bacterium	845	Open in IMG/M
3300005556\|Ga0066707_10400209	All Organisms → cellular organisms → Bacteria	894	Open in IMG/M
3300005576\|Ga0066708_10079544	All Organisms → cellular organisms → Bacteria	1907	Open in IMG/M
3300005617\|Ga0068859_102306012	Not Available	594	Open in IMG/M
3300005764\|Ga0066903_106394140	Not Available	614	Open in IMG/M
3300005841\|Ga0068863_101119269	Not Available	792	Open in IMG/M
3300006028\|Ga0070717_11255591	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	674	Open in IMG/M
3300006031\|Ga0066651_10253742	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	933	Open in IMG/M
3300006031\|Ga0066651_10585296	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	593	Open in IMG/M
3300006046\|Ga0066652_101656646	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	585	Open in IMG/M
3300006176\|Ga0070765_101349919	Not Available	672	Open in IMG/M
3300006794\|Ga0066658_10749696	All Organisms → cellular organisms → Bacteria	545	Open in IMG/M
3300006796\|Ga0066665_10248763	Not Available	1406	Open in IMG/M
3300006796\|Ga0066665_11045918	All Organisms → cellular organisms → Bacteria → Proteobacteria	624	Open in IMG/M
3300006797\|Ga0066659_10990564	Not Available	702	Open in IMG/M
3300006800\|Ga0066660_11678612	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	506	Open in IMG/M
3300006804\|Ga0079221_11780021	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	504	Open in IMG/M
3300007004\|Ga0079218_11535073	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	724	Open in IMG/M
3300007076\|Ga0075435_101294486	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	638	Open in IMG/M
3300007788\|Ga0099795_10635509	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Salmonella → Salmonella enterica	510	Open in IMG/M
3300009012\|Ga0066710_100670038	Not Available	1579	Open in IMG/M
3300009012\|Ga0066710_103927614	Not Available	557	Open in IMG/M
3300009012\|Ga0066710_104114190	Not Available	544	Open in IMG/M
3300009088\|Ga0099830_10049108	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2969	Open in IMG/M
3300009094\|Ga0111539_10094619	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3510	Open in IMG/M
3300009137\|Ga0066709_100660127	All Organisms → cellular organisms → Bacteria → Proteobacteria	1498	Open in IMG/M
3300009137\|Ga0066709_102182633	Not Available	764	Open in IMG/M
3300009137\|Ga0066709_103987214	Not Available	537	Open in IMG/M
3300009137\|Ga0066709_104602017	Not Available	504	Open in IMG/M
3300009137\|Ga0066709_104637161	Not Available	503	Open in IMG/M
3300009143\|Ga0099792_10595954	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	704	Open in IMG/M
3300009156\|Ga0111538_10095727	All Organisms → cellular organisms → Bacteria	3775	Open in IMG/M
3300009156\|Ga0111538_13092402	Not Available	580	Open in IMG/M
3300009553\|Ga0105249_12383917	Not Available	602	Open in IMG/M
3300009789\|Ga0126307_10311340	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1267	Open in IMG/M
3300010037\|Ga0126304_10269794	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1123	Open in IMG/M
3300010038\|Ga0126315_10706592	Not Available	658	Open in IMG/M
3300010040\|Ga0126308_10224857	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1213	Open in IMG/M
3300010335\|Ga0134063_10515850	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	600	Open in IMG/M
3300012685\|Ga0137397_11269737	Not Available	526	Open in IMG/M
3300012927\|Ga0137416_11482378	Not Available	616	Open in IMG/M
3300012975\|Ga0134110_10518877	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	544	Open in IMG/M
3300012986\|Ga0164304_10423872	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	952	Open in IMG/M
3300014487\|Ga0182000_10518136	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	558	Open in IMG/M
3300014968\|Ga0157379_11447660	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	667	Open in IMG/M
3300015371\|Ga0132258_11538421	All Organisms → cellular organisms → Bacteria	1680	Open in IMG/M
3300018422\|Ga0190265_10625611	Not Available	1196	Open in IMG/M
3300020020\|Ga0193738_1108171	Not Available	788	Open in IMG/M
3300020582\|Ga0210395_10468361	All Organisms → cellular organisms → Bacteria → Proteobacteria	948	Open in IMG/M
3300021388\|Ga0213875_10164060	Not Available	1042	Open in IMG/M
3300025900\|Ga0207710_10028904	All Organisms → cellular organisms → Bacteria	2408	Open in IMG/M
3300025901\|Ga0207688_10919365	Not Available	554	Open in IMG/M
3300025903\|Ga0207680_10461131	Not Available	903	Open in IMG/M
3300025912\|Ga0207707_10111835	All Organisms → cellular organisms → Bacteria → Proteobacteria	2388	Open in IMG/M
3300025915\|Ga0207693_10974564	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	648	Open in IMG/M
3300025918\|Ga0207662_10458988	Not Available	872	Open in IMG/M
3300025921\|Ga0207652_11770916	Not Available	523	Open in IMG/M
3300025923\|Ga0207681_11820093	Not Available	508	Open in IMG/M
3300025930\|Ga0207701_10154078	All Organisms → cellular organisms → Bacteria → Proteobacteria	2036	Open in IMG/M
3300025930\|Ga0207701_10194544	All Organisms → cellular organisms → Bacteria → Proteobacteria	1784	Open in IMG/M
3300025931\|Ga0207644_11139288	Not Available	656	Open in IMG/M
3300025936\|Ga0207670_10971516	Not Available	714	Open in IMG/M
3300025941\|Ga0207711_10360188	Not Available	1347	Open in IMG/M
3300026041\|Ga0207639_11599595	Not Available	611	Open in IMG/M
3300026116\|Ga0207674_10226408	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1818	Open in IMG/M
3300026329\|Ga0209375_1081034	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1505	Open in IMG/M
3300026523\|Ga0209808_1192474	Not Available	694	Open in IMG/M
3300026548\|Ga0209161_10428742	Not Available	581	Open in IMG/M
3300027842\|Ga0209580_10248527	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	884	Open in IMG/M
3300027862\|Ga0209701_10726242	Not Available	509	Open in IMG/M
3300027907\|Ga0207428_11245094	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	517	Open in IMG/M
3300028381\|Ga0268264_11287739	Not Available	741	Open in IMG/M
3300031753\|Ga0307477_10537378	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	792	Open in IMG/M
3300031754\|Ga0307475_10041157	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3423	Open in IMG/M
3300032180\|Ga0307471_103661693	Not Available	544	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	77.45%
Host-Associated	Host-Associated	22.55%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	77.45%
Plants	Host-Associated → Plants	22.55%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	77.45%
Rhizosphere	Host-Associated → Plants → Rhizosphere	14.71%
Rhizoplane	Host-Associated → Plants → Rhizoplane	6.86%
Roots	Host-Associated → Plants → Roots	0.98%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	54.90%
Loam	Environmental → Terrestrial → Soil → Loam	22.55%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	8.82%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	5.88%
Soil	Host-Associated → Plants → Rhizosphere → Soil	5.88%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.98%
Unclassified	Host-Associated → Plants → Roots → Unclassified	0.98%

Habitat	Taxonomy	Distribution
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	27.45%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	17.65%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	14.71%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	8.82%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	5.88%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	5.88%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	5.88%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	5.88%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	3.92%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	1.96%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.98%
Unclassified	Host-Associated → Plants → Roots → Unclassified → Unclassified	0.98%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	17.65%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	7.84%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	5.88%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	5.88%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	4.90%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	4.90%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	4.90%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	3.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	3.92%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	3.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.94%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	2.94%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	2.94%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	2.94%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	2.94%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	1.96%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	1.96%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	1.96%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Corn, Switchgrass And Miscanthus Rhizosphere	1.96%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	1.96%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	1.96%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	1.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.98%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.98%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	0.98%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.98%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.98%
Plant Roots	Host-Associated → Plants → Roots → Unclassified → Unclassified → Plant Roots	0.98%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.98%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.98%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000912	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA Ref_M3	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300004153	Grasslands soil microbial communities from Hopland, California, USA (version 2)	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300004643	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3	Environmental	Open in IMG/M
3300005175	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_122	Environmental	Open in IMG/M
3300005176	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_128	Environmental	Open in IMG/M
3300005330	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005341	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG	Environmental	Open in IMG/M
3300005343	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG	Environmental	Open in IMG/M
3300005353	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG	Host-Associated	Open in IMG/M
3300005355	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG	Host-Associated	Open in IMG/M
3300005356	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG	Host-Associated	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005451	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_130	Environmental	Open in IMG/M
3300005454	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_136	Environmental	Open in IMG/M
3300005458	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005535	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG	Environmental	Open in IMG/M
3300005542	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1	Environmental	Open in IMG/M
3300005556	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_156	Environmental	Open in IMG/M
3300005576	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_157	Environmental	Open in IMG/M
3300005617	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2	Host-Associated	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005841	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2	Host-Associated	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006031	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Angelo_100	Environmental	Open in IMG/M
3300006046	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300006794	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_107	Environmental	Open in IMG/M
3300006796	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114	Environmental	Open in IMG/M
3300006797	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108	Environmental	Open in IMG/M
3300006800	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109	Environmental	Open in IMG/M
3300006804	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200	Environmental	Open in IMG/M
3300007004	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost	Environmental	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300007788	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009088	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG	Environmental	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009143	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2	Environmental	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300009789	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot28	Environmental	Open in IMG/M
3300010037	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot25	Environmental	Open in IMG/M
3300010038	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot106	Environmental	Open in IMG/M
3300010040	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot55	Environmental	Open in IMG/M
3300010335	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09082015	Environmental	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012975	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_11112015	Environmental	Open in IMG/M
3300012986	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MG	Environmental	Open in IMG/M
3300014487	Bulk soil microbial communities from Mexico - Magueyal (Ma) metaG	Environmental	Open in IMG/M
3300014968	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG	Host-Associated	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300018422	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 124 T	Environmental	Open in IMG/M
3300020020	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L2a1	Environmental	Open in IMG/M
3300020582	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O	Environmental	Open in IMG/M
3300021388	Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8	Host-Associated	Open in IMG/M
3300025900	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025901	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes)	Host-Associated	Open in IMG/M
3300025903	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025912	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025918	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300025921	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025923	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025930	Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)	Environmental	Open in IMG/M
3300025931	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025936	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes)	Environmental	Open in IMG/M
3300025941	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026041	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026116	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026329	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_131 (SPAdes)	Environmental	Open in IMG/M
3300026523	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_157 (SPAdes)	Environmental	Open in IMG/M
3300026548	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155 (SPAdes)	Environmental	Open in IMG/M
3300027842	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027862	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027907	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)	Host-Associated	Open in IMG/M
3300028381	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300031753	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515	Environmental	Open in IMG/M
3300031754	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12032J12867_10150982	3300000912	Forest Soil	MRETIDFLRKSAEDLRELALSAPDISDHLRRLADELDATATDLEQRGSATRR*
JGIcombinedJ26739_1008383742	3300002245	Forest Soil	MRETIDFLRKSAEDLRELALSAPDISDHLRRLAEELDATASDLEQRGRATRR*
JGIcombinedJ26739_1009129112	3300002245	Forest Soil	MRETIEFLRKXAEELRDLAATAPDISDHLRRLAEELDATADDLERPRRAS*
Ga0063455_1014361403	3300004153	Soil	MRETIDFLRKSADELRELALSAPDISDHLRRLADELDATVA
Ga0062590_1015757642	3300004157	Soil	MRDAIEFLRKSAEELRELASSAPDISEHLRRLADELDETAADLERGGGIPN*
Ga0062595_1001288292	3300004479	Soil	MRETIDFLRRSAEELRDLADSAPDISDHLRRLADELDGTASDLEQRGNAPRG*
Ga0062595_1022532172	3300004479	Soil	MRDAIEFLRNSAAELRELASSAPDISEHLRRLADELDETAADLERGGGIPN*
Ga0062591_1003715812	3300004643	Soil	MRDAIEFLRSSAEELRELASSAPDISDHLRRLADELDATAADLERGKGIAD*
Ga0066673_104291621	3300005175	Soil	MRETIDFLRKSAEELRDLAASAPDISDHLRRLADELDATAIDLERRGNAPRR*
Ga0066679_103590732	3300005176	Soil	MLPVCIIIMRETIEFLRKSAEELRELAASAPDISDQLRRLAEELDATADDLERQGRRS*
Ga0070690_1007100632	3300005330	Switchgrass Rhizosphere	LLRRSSVHKHTMRDAIDFLRNSAAELRELASSAPDISEHLRRLADELDETAADLERRGGVRN*
Ga0066388_1002712652	3300005332	Tropical Forest Soil	MRETIDFLRRSAEELRDLADSAPDICDHLRRLADELDATASDLEGLSRAARR*
Ga0070691_107274241	3300005341	Corn, Switchgrass And Miscanthus Rhizosphere	MRDAIDFLRNSAAELRELASSAPDISEHLRRLADELDETAADLERGGGIPN*
Ga0070687_1009037302	3300005343	Switchgrass Rhizosphere	EFLRKSAEELRELASSAPDISEHLRRLADELDETAADLERGGGIPN*
Ga0070669_1010950062	3300005353	Switchgrass Rhizosphere	MRDAIEFLRKSAEELRELASSAPDISGALRRLADELDSAAAEIERRGGVPN*
Ga0070671_1011351841	3300005355	Switchgrass Rhizosphere	MRDAIDFLRNSAAELRELASSAPDISEHLRRLADELDETAADLERRGGVRN*
Ga0070674_1020188741	3300005356	Miscanthus Rhizosphere	MRDAIEFLRNSAAELRELASSAPDISEHLRRLADELDETAADL
Ga0070709_106015972	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	RRSAEELRDLADSAPDISDHLRRLADELDGTASDLEQRGNAPRR*
Ga0070713_1005154821	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	ETIDFLRRSAEELRDLADSAPDISDHLRRLADELDGTASDLEQRGNAPRG*
Ga0066681_107105521	3300005451	Soil	LRKTATELRELAAYGPDIADQLRRLADELDAAADELEDQAGKSA*
Ga0066687_101350642	3300005454	Soil	MRETIDFLRKSAEELRELADSAPDISDHLRRLADELDATASDLEQRGNAARN*
Ga0066687_104876342	3300005454	Soil	IEFLRKSAEELRELAASAPDISDQLRRLAEELDATADDLERQGRGS*
Ga0066687_109321992	3300005454	Soil	MRETIDFLRKSADELRELAASAPDISDHLRRLADELDATATDLERRGNATRG*
Ga0070681_101949463	3300005458	Corn Rhizosphere	MRDAIEFLRSSAEELRELASSAPDISEHLRRLADELDATAADLERGGGIRN*
Ga0070681_120408402	3300005458	Corn Rhizosphere	MRDAIEFLRTSAEELRELASSAPDISDHLRRLADELDATAADLERGGGIPN*
Ga0070707_1013685751	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	MRETIDFLRKSAEELRELAASAPDISDHLRRMAEELDATADDLERPRRSG*R
Ga0070684_1004758291	3300005535	Corn Rhizosphere	IEFLRKSAEELRELASSATDISEHLRRLADELDETAADLERGGGIPN*
Ga0070732_103849863	3300005542	Surface Soil	MNDAIKFLRRSAEELRELASSAPDISEQLRRLADELDEVAADLVRRGGVDG*
Ga0066707_104002092	3300005556	Soil	MRETIEFLRKSAEELRELAASAPDISDHLRRLAEELDATADDLARQGRHS*
Ga0066708_100795443	3300005576	Soil	MRETIDFLRKSAEELRDLAASAPDISDHLRRLADELDATAIDLERRGNAPR
Ga0068859_1023060122	3300005617	Switchgrass Rhizosphere	SSVHTGIMRDAIEFLRTSAEELRELASSAPDISDHLRRLADELDATAADLERGGGIPN*
Ga0066903_1063941402	3300005764	Tropical Forest Soil	MRDAIEFLRKSADELRELASSAPDISGHLHRLAEELDSTAAELERR
Ga0068863_1011192692	3300005841	Switchgrass Rhizosphere	LLRRSSVHKHTMRDAIDFLRNSAAELRELASSAPDISEHLRRLADDLDETAADLERRGGVRN*
Ga0070717_112555912	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	MRKSAEDLRELALSAPDISDHLRRLAEELDATATDLEHETALLAVS*
Ga0066651_102537422	3300006031	Soil	VCIGTMRETIDFLRKSAEELRDLAASAPDISDHLRRLADELDATAIDLERRGNAPRR*
Ga0066651_105852962	3300006031	Soil	MRETIDFLRKSADELRELALSAPDISDHLRRLAEELDATATDLERRGNATRG*
Ga0066652_1016566461	3300006046	Soil	ETIDFLRKSAEELRDLAASAPDISDHLRRLADELDATAIDLERRGNAPRR*
Ga0070765_1013499192	3300006176	Soil	MSETIDFLRRRAEELRELASSTPDIASQLGRLANELDAMAATLDQRRQGGP*
Ga0066658_107496962	3300006794	Soil	MRETIEFLRKSAEELRELAASAPDISDHLRRLAEELDATADDLERPGRGSRR*
Ga0066665_102487633	3300006796	Soil	MGETIEFLRKSAEELRELAACAPDISDHLRRLAEELDATADDLARQGRHS*
Ga0066665_110459182	3300006796	Soil	MRETIEFLRKSAEELRELASSAPDISDHLRRLAEELDATADDLERRGRRS*
Ga0066659_109905641	3300006797	Soil	MRETIEFLRKSAEELRELAASAPDISDHLRRLAEELDATADDLARQGRRS*
Ga0066660_116786121	3300006800	Soil	MRETIEFLRKSAEELRELASSAPDISEQLRRLADELDAAAADLQRGTGRSP*
Ga0079221_117800211	3300006804	Agricultural Soil	DFLRKSAEELRELAASAPDISDHLRRLADELDATAIDLERRGNAPRR*
Ga0079218_115350732	3300007004	Agricultural Soil	MRDAIEFLRRSADELRELASSTPDISEHLRRLADELDATAADLERRGGVPN*
Ga0075435_1012944861	3300007076	Populus Rhizosphere	SVHSGIMRDAIEFLRTSAEELRELASSAPDISDHLRRLADELDATAADLERGGGIPN*
Ga0099795_106355091	3300007788	Vadose Zone Soil	RETIDFLRKSAEDLRELALSAPDISDHLRRLADELDATATDLEQRGSATRR*
Ga0066710_1006700382	3300009012	Grasslands Soil	MMPVCIIIMRETIDFLRKSAEELRELASSAPDISEHLRRLAEELDGTADDLERRGRSS
Ga0066710_1039276141	3300009012	Grasslands Soil	MRETIDFLRKSADELRELALSAPDISDHLRRLADELDATVADLERRGSGTRG
Ga0066710_1041141902	3300009012	Grasslands Soil	MRKSAEELRDLASSAPDISDQLRRLADELDATASELERRPGRAP
Ga0099830_100491084	3300009088	Vadose Zone Soil	MRETIEFLRKSAEELRELAASATDISDHLRRLAEELDATADDLERRGRGS*
Ga0111539_100946193	3300009094	Populus Rhizosphere	MRDAIEFLRKSAEELRDLASSAPDISDHLRRLADELDTTAADLERGGGIPN*
Ga0066709_1006601272	3300009137	Grasslands Soil	MRKSAEELRDLASSAPDISDQLRRLADELDATASELERRPGRAP*
Ga0066709_1021826333	3300009137	Grasslands Soil	MRDAVEFLRRTAEELRELAANGPDIADQLRRLANELDAAADELEDQAGKTG*
Ga0066709_1039872141	3300009137	Grasslands Soil	MRDAIEFLRKTATELRELAAYGPDIADQLRRLADELDAAADELEDQAGKSA*
Ga0066709_1046020171	3300009137	Grasslands Soil	PVCISIMRETIEFLRKSAEELRELAASAPDISDHLRRLAEELDATADDLARQGRRS*
Ga0066709_1046371613	3300009137	Grasslands Soil	MRETIDFLRKSADELRELALSAPDISDHLRRLADELDATVADLERRGSGTRG*
Ga0099792_105959543	3300009143	Vadose Zone Soil	MRETIDFLRKSADELRELALSAPDISDHLRRLADELDATVADLEQRGSGTRG*
Ga0111538_100957273	3300009156	Populus Rhizosphere	MRDAIEFLRSSAEELRELASSAPDISDHLRRLADELDTTAADLERGGGIPN*
Ga0111538_130924022	3300009156	Populus Rhizosphere	MRDAIEFLRNSAEELRELASSAPDISDHLRRLADEL
Ga0105249_123839171	3300009553	Switchgrass Rhizosphere	MRDAIDFLRNSAAELRELASSAPDISEHLRRLADDLDETAADLERRGGVRN*
Ga0126307_103113402	3300009789	Serpentine Soil	MRDAIEFLRKSADELRELASSAPDISEHLRRLADELDATAADLERRGGVPN*
Ga0126304_102697942	3300010037	Serpentine Soil	MRDAIEFLRKSADELRELASSAPDISEHLRRLAEELDATAADLERRGGVPN*
Ga0126315_107065921	3300010038	Serpentine Soil	MRDAIEFLRKSAEELRELASSAPDISDNLRRLADELDATA
Ga0126308_102248572	3300010040	Serpentine Soil	MRDAIEFLRKSADELRELASTAPDISEHLRRLAEELDATAADLERRGGVPN*
Ga0134063_105158502	3300010335	Grasslands Soil	FLRRSAEELRDLAESAPDISDHLRRLADELDATASDLEQRGNAPRG*
Ga0137397_112697371	3300012685	Vadose Zone Soil	MRETIDFLRRSAEELRDLAESAPDISDHLRRLADELDATASDLEQR
Ga0137416_114823781	3300012927	Vadose Zone Soil	MRETIDFLRKSAEELRQLAASAPDISDHLRRLAEELDATADDLERPRRSS*
Ga0134110_105188771	3300012975	Grasslands Soil	LRRSAEELRDLAESAPDISDHLRRLADELDATASDLEQRGNAPRG*
Ga0164304_104238722	3300012986	Soil	MRETIDFLRRSAEELRDLAESAPDISDHLRRLADELDGTASDLEQRGNAPRR*
Ga0182000_105181362	3300014487	Soil	DFLRRSAEELRDLADSAPDISDHLRRLADELDGTASDLEQRGNARRG*
Ga0157379_114476601	3300014968	Switchgrass Rhizosphere	MRDAIEFLRNSAKELRELASSAPDISDHLRRLADELDATAADLERGGGIPN*
Ga0132258_115384213	3300015371	Arabidopsis Rhizosphere	MRDAIEFLRKSADELRELASSAPDISAHLYRLAEELDSTAAELEHRGGVPN*
Ga0190265_106256112	3300018422	Soil	MRDAIEFLRQSAEELRELASSAPDISDHLRRLADELDATAADLERGGGIPN
Ga0193738_11081711	3300020020	Soil	MTDAIEFLRRSAEELRELASSAPDISDQLRQLADELDATAAELEQRGGVPI
Ga0210395_104683612	3300020582	Soil	MSETIDFLRRRAEELRELASSTPDIASQLGRLANELDAMAATLDQRRQGGP
Ga0213875_101640602	3300021388	Plant Roots	MRQAIDFLRQSADELRNMASSAPDISDQLRRLAEELDATASHIENGRGAVP
Ga0207710_100289042	3300025900	Switchgrass Rhizosphere	MRDAIEFLRNSAAELRELASSAPDISEHLRRLADELDETAADLERGGGIPN
Ga0207688_109193652	3300025901	Corn, Switchgrass And Miscanthus Rhizosphere	MRDAIEFLRTSAEELRELASSAPDISDHLRRLADELDATAADLERGGGIPN
Ga0207680_104611312	3300025903	Switchgrass Rhizosphere	MRDAIEFLRTSAEELRELASSAPDISDHLRRLADELDATSADLERGGGIPN
Ga0207707_101118353	3300025912	Corn Rhizosphere	MRDAIEFLRSSAEELRELASSAPDISEHLRRLADELDATAADLERGGGIRN
Ga0207693_109745641	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	MRETIDFLRRSAEELRDLAESAPDISDHLRRLADELDATASDLEQRGNAPRG
Ga0207662_104589881	3300025918	Switchgrass Rhizosphere	MRDAIEFLRKSAEELRELASSAPDISEHLRRLADELDETAADLERGGGIPN
Ga0207652_117709162	3300025921	Corn Rhizosphere	MRDAIEFLRQSAEELRALASSAPDISEHLRRLADELDETAADLERGGGIPN
Ga0207681_118200931	3300025923	Switchgrass Rhizosphere	MRDAIEFLRNSAAELRELASSAPDISEHLRRLADELDETAADLERRGGVRN
Ga0207701_101540782	3300025930	Corn, Switchgrass And Miscanthus Rhizosphere	MRDAIEFLRSSAEELRELASSAPDISDHLRRLADELDATAADLERGKGIAD
Ga0207701_101945442	3300025930	Corn, Switchgrass And Miscanthus Rhizosphere	MRDAIEFLRNSAAELRELASSAPDISEHLRRLADDLDETAADLERRGGVRN
Ga0207644_111392881	3300025931	Switchgrass Rhizosphere	FLRNSAAELRELASSAPDISEHLRRLADELDETAADLERGGGVPN
Ga0207670_109715162	3300025936	Switchgrass Rhizosphere	RLSSVHCGIMRDAIEFLRKSAEELRELASSAPDISGALRRLADELDSAAAEIERRGGVPN
Ga0207711_103601882	3300025941	Switchgrass Rhizosphere	MRDAIEFLRNSAAELRELASSAPDISEHLRRLADELDETAADLERGGGVPN
Ga0207639_115995952	3300026041	Corn Rhizosphere	MRDAIEFLRTSAEELRGLASSAPDISDHLRRLADELDATAADLERGGGIPN
Ga0207674_102264081	3300026116	Corn Rhizosphere	MRETIDFLRRSAEELRDLADSAPDISDHLRRLADELDGTASDLEQRGNAPR
Ga0209375_10810343	3300026329	Soil	MRETIDFLRRSAEELRDLAELAPDISDHLRRLADELDATASDLEQRGNAPRG
Ga0209808_11924742	3300026523	Soil	MRETIDFLRKSAEELRDLAASAPDISDHLRRLADELDATAIDLERR
Ga0209161_104287422	3300026548	Soil	MRETIEFLRKSAEELRELAASAPDISDHLRRLAEELDATADDLARQGRRS
Ga0209580_102485272	3300027842	Surface Soil	MNDAIKFLRRSAEELRELASSAPDISEQLRRLADELDEVAADLVRRGGVDG
Ga0209701_107262421	3300027862	Vadose Zone Soil	LRNSLSLLPVCIDTMRETIEFLRKSAEELRELAASATDISDHLRRLAEELDATADDLERRGRGS
Ga0207428_112450942	3300027907	Populus Rhizosphere	MRDAIEFLRKSAEELRDLASSAPDISDHLRRLADELDTTAADLERGGGIPN
Ga0268264_112877392	3300028381	Switchgrass Rhizosphere	MRDAIDFLRNSAAELRELASSAPDISEHLRRLADELDETAADLERRGGVRN
Ga0307477_105373782	3300031753	Hardwood Forest Soil	MSDTIAFLRESAEELRDMASSTPDISDQLQRLADELDATAADLERRGGRVP
Ga0307475_100411574	3300031754	Hardwood Forest Soil	MRETIDFLRKSAEELRDLAASAPDISSYLRQLADELDMTAADLERRGKPTRC
Ga0307471_1036616931	3300032180	Hardwood Forest Soil	MRDAIEFLRKSADELRELASSAPDISGHLYRLAEELDSTAAELERRGGVPN

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F101541

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences