Metagenome / Metatranscriptome Family F101488

Overview

Basic Information

• Family ID: F101488
• Family Type: Metagenome / Metatranscriptome
• Number of Sequences: 102
• Average Sequence Length: 39 residues
• Representative Sequence: MAELQNEIFQEAMDTGLVNLEKRKQLLKYKEHLKNL
• Number of Associated Samples: 88
• Number of Associated Scaffolds: 102

Quality Assessment

• Transcriptomic Evidence: Yes
• Most common taxonomic group: Unclassified
• % of genes with valid RBS motifs: 4.90 %
• % of genes near scaffold ends (potentially truncated): 67.65 %
• % of genes from short scaffolds (< 2000 bps): 86.27 %
• Associated GOLD sequencing projects: 79
• AlphaFold2 3D model prediction: Yes
• 3D model pTM-score: 0.42

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Most Common Taxonomy

• Group: Unclassified (68.627 % of family members)
• NCBI Taxonomy ID: N/A
• Taxonomy: N/A

Most Common Ecosystem

• GOLD Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine (20.588 % of family members)
• Environment Ontology (ENVO): Unclassified (67.647 % of family members)
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline) (80.392 % of family members)

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure

• Classification: Globular
• Signal Peptide: No
• Secondary Structure distribution:
  α-helix: 45.31%
  β-sheet: 0.00%
  Coil/Unstructured: 54.69%

Predicted 3D Structure

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 102 Family Scaffolds
PF14743	DNA_ligase_OB_2	7.84
PF04542	Sigma70_r2	7.84
PF02796	HTH_7	6.86
PF08279	HTH_11	5.88
PF04404	ERF	3.92
PF13662	Toprim_4	0.98
PF12684	DUF3799	0.98
PF03819	MazG	0.98
PF03061	4HBT	0.98

Neighboring Clusters of Orthologous Genes (COGs)

COG ID	Name	Functional Category	% Frequency in 102 Family Scaffolds
COG0568	DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)	Transcription [K]	7.84
COG1191	DNA-directed RNA polymerase specialized sigma subunit	Transcription [K]	7.84
COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	Transcription [K]	7.84
COG4941	Predicted RNA polymerase sigma factor, contains C-terminal TPR domain	Transcription [K]	7.84

Phylogeny

NCBI Taxonomy

Level 1

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	68.63 %
All Organisms	root	All Organisms	31.37 %

Level 2

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	68.63 %
cellular organisms	root	All Organisms → cellular organisms	16.67 %
Viruses	superkingdom	All Organisms → Viruses	14.71 %

Level 3

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	68.63 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	16.67 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	9.80 %
Duplodnaviria	clade	All Organisms → Viruses → Duplodnaviria	0.98 %

Level 4

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	68.63 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	16.67 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	9.80 %
Heunggongvirae	kingdom	All Organisms → Viruses → Duplodnaviria → Heunggongvirae	0.98 %

Level 5

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	68.63 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	16.67 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	9.80 %
Uroviricota	phylum	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota	0.98 %

Level 6

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	68.63 %
unclassified Gammaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria	16.67 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	9.80 %
Caudoviricetes	class	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	0.98 %

Level 7

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	68.63 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	16.67 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	9.80 %
environmental samples	no rank	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples	0.98 %

Level 8

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	68.63 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	16.67 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	9.80 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	0.98 %

Associated Scaffolds

Scaffold	Taxonomy	Length
3300000101|DelMOSum2010_c10050989	All Organisms → Viruses → Predicted Viral	2067
3300000117|DelMOWin2010_c10026596	All Organisms → Viruses → Predicted Viral	2897
3300000117|DelMOWin2010_c10212357	Not Available	588
3300001450|JGI24006J15134_10047866	All Organisms → Viruses → Predicted Viral	1768
3300001450|JGI24006J15134_10050965	All Organisms → Viruses → Predicted Viral	1691
3300001460|JGI24003J15210_10028906	Not Available	2034
3300001460|JGI24003J15210_10041516	Not Available	1593
3300001460|JGI24003J15210_10050621	All Organisms → Viruses → Predicted Viral	1388
3300001472|JGI24004J15324_10034119	Not Available	1625
3300001589|JGI24005J15628_10038248	Not Available	1945
3300001589|JGI24005J15628_10176287	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	622
3300004457|Ga0066224_1002552	Not Available	1567
3300006191|Ga0075447_10042542	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1703
3300006749|Ga0098042_1137405	Not Available	604
3300006789|Ga0098054_1298459	Not Available	576
3300006922|Ga0098045_1027290	Not Available	1488
3300006947|Ga0075444_10063518	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1703
3300006947|Ga0075444_10228437	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	740
3300007276|Ga0070747_1166729	Not Available	787
3300007276|Ga0070747_1220686	Not Available	664
3300007344|Ga0070745_1191230	Not Available	759
3300007559|Ga0102828_1091282	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	736
3300007956|Ga0105741_1084393	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	776
3300007957|Ga0105742_1037013	Not Available	634
3300007992|Ga0105748_10099626	Not Available	1161
3300009425|Ga0114997_10568506	Not Available	599
3300009428|Ga0114915_1096296	Not Available	885
3300009433|Ga0115545_1193219	Not Available	696
3300009436|Ga0115008_10578850	Not Available	807
3300009445|Ga0115553_1394198	Not Available	527
3300009467|Ga0115565_10287503	Not Available	749
3300009512|Ga0115003_10157610	Not Available	1377
3300009608|Ga0115100_10714924	Not Available	3175
3300009785|Ga0115001_10104287	Not Available	1857
3300010149|Ga0098049_1181656	Not Available	647
3300010150|Ga0098056_1054405	All Organisms → Viruses → Predicted Viral	1382
3300010392|Ga0118731_103653840	Not Available	1380
3300010392|Ga0118731_108685982	Not Available	1263
3300010392|Ga0118731_110820690	Not Available	792
3300010392|Ga0118731_111756360	Not Available	1765
3300010392|Ga0118731_112928072	Not Available	500
3300010430|Ga0118733_103054667	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	917
3300011118|Ga0114922_11577173	Not Available	527
3300012920|Ga0160423_10600385	Not Available	746
3300017713|Ga0181391_1107005	Not Available	630
3300017714|Ga0181412_1027057	Not Available	1563
3300017725|Ga0181398_1081042	Not Available	777
3300017744|Ga0181397_1035674	Not Available	1413
3300017746|Ga0181389_1100143	Not Available	799
3300017762|Ga0181422_1161401	Not Available	685
3300017762|Ga0181422_1179808	Not Available	643
3300017771|Ga0181425_1046937	Not Available	1409
3300017782|Ga0181380_1024922	Not Available	2213
3300017783|Ga0181379_1169292	Not Available	773
3300020457|Ga0211643_10545963	Not Available	569
3300020469|Ga0211577_10451397	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	787
3300021335|Ga0213867_1014968	Not Available	3225
3300021347|Ga0213862_10317173	Not Available	554
3300022061|Ga0212023_1037309	Not Available	676
3300022067|Ga0196895_1037603	Not Available	556
3300022068|Ga0212021_1069949	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	719
3300022167|Ga0212020_1023425	Not Available	1010
3300022178|Ga0196887_1137293	Not Available	511
3300022200|Ga0196901_1250147	Not Available	550
(restricted) 3300022938|Ga0233409_10205061	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	666
(restricted) 3300023109|Ga0233432_10080146	Not Available	1910
(restricted) 3300023210|Ga0233412_10012948	All Organisms → Viruses	3335
(restricted) 3300024052|Ga0255050_10085324	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	713
(restricted) 3300024062|Ga0255039_10376394	Not Available	612
3300024229|Ga0233402_1071794	Not Available	726
3300024236|Ga0228655_1087536	Not Available	673
3300024237|Ga0228653_1103089	Not Available	609
3300024297|Ga0228658_1003328	All Organisms → Viruses	4469
3300024297|Ga0228658_1118340	Not Available	646
3300024334|Ga0228671_1047387	Not Available	1144
(restricted) 3300024340|Ga0255042_10066400	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	944
3300024346|Ga0244775_10260097	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	1445
3300024428|Ga0233396_1088270	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	766
(restricted) 3300024518|Ga0255048_10423571	Not Available	644
(restricted) 3300024519|Ga0255046_10066855	Not Available	1455
3300025120|Ga0209535_1012657	All Organisms → Viruses → Predicted Viral	4630
3300025138|Ga0209634_1183869	Not Available	817
3300025168|Ga0209337_1074102	Not Available	1673
3300025276|Ga0208814_1131284	Not Available	587
3300025816|Ga0209193_1015079	All Organisms → Viruses	2558
3300026505|Ga0228647_1039892	All Organisms → Viruses	1203
3300026517|Ga0228607_1109939	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	683
3300027186|Ga0208797_1027314	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	752
3300027668|Ga0209482_1060248	Not Available	1342
3300027704|Ga0209816_1174246	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	740
3300027820|Ga0209578_10301651	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	744
3300027858|Ga0209013_10433022	Not Available	721
3300027906|Ga0209404_10382147	Not Available	914
3300028008|Ga0228674_1046688	All Organisms → Viruses → Predicted Viral	1658
3300028136|Ga0228608_1017053	All Organisms → Viruses → Predicted Viral	2140
3300028194|Ga0257106_1045211	Not Available	1680
3300028297|Ga0228617_1005720	Not Available	5056
3300028418|Ga0228615_1190015	Not Available	508
3300029448|Ga0183755_1052409	Not Available	1016
3300033742|Ga0314858_171255	Not Available	558
3300034374|Ga0348335_002457	Not Available	12784
3300034374|Ga0348335_037587	All Organisms → Viruses → Predicted Viral	2026

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Environmental Properties

Associated Habitat Types

Ecosystem

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Class

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	100.00%

Category

Habitat	Taxonomy	Distribution
Marine	Environmental → Aquatic → Marine	100.00%

Type

Habitat	Taxonomy	Distribution
Coastal	Environmental → Aquatic → Marine → Coastal	37.25%
Oceanic	Environmental → Aquatic → Marine → Oceanic	25.49%
Strait	Environmental → Aquatic → Marine → Strait	12.75%
Unclassified	Environmental → Aquatic → Marine → Unclassified	9.80%
Inlet	Environmental → Aquatic → Marine → Inlet	4.90%
Pelagic	Environmental → Aquatic → Marine → Pelagic	3.92%
Neritic Zone	Environmental → Aquatic → Marine → Neritic Zone	2.94%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	1.96%
Oil Seeps	Environmental → Aquatic → Marine → Oil Seeps	0.98%

Subtype

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Aquatic → Marine → Coastal → Unclassified	30.39%
Unclassified	Environmental → Aquatic → Marine → Oceanic → Unclassified	23.53%
Unclassified	Environmental → Aquatic → Marine → Strait → Unclassified	12.75%
Unclassified	Environmental → Aquatic → Marine → Unclassified → Unclassified	9.80%
Sediment	Environmental → Aquatic → Marine → Coastal → Sediment	6.86%
Unclassified	Environmental → Aquatic → Marine → Inlet → Unclassified	4.90%
Unclassified	Environmental → Aquatic → Marine → Pelagic → Unclassified	3.92%
Unclassified	Environmental → Aquatic → Marine → Neritic Zone → Unclassified	2.94%
Estuary	Environmental → Aquatic → Marine → Intertidal Zone → Estuary	1.96%
Photic Zone	Environmental → Aquatic → Marine → Oceanic → Photic Zone	0.98%
Sediment	Environmental → Aquatic → Marine → Oceanic → Sediment	0.98%
Unclassified	Environmental → Aquatic → Marine → Oil Seeps → Unclassified	0.98%

Habitat

Habitat	Taxonomy	Distribution
Marine	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine	20.59%
Seawater	Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater	14.71%
Seawater	Environmental → Aquatic → Marine → Strait → Unclassified → Seawater	12.75%
Aqueous	Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous	10.78%
Marine	Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine	8.82%
Seawater	Environmental → Aquatic → Marine → Inlet → Unclassified → Seawater	4.90%
Marine	Environmental → Aquatic → Marine → Coastal → Sediment → Marine	4.90%
Pelagic Marine	Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine	3.92%
Estuary Water	Environmental → Aquatic → Marine → Coastal → Unclassified → Estuary Water	2.94%
Marine	Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine	2.94%
Deep Ocean	Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean	1.96%
Marine Sediment	Environmental → Aquatic → Marine → Coastal → Sediment → Marine Sediment	1.96%
Estuarine	Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine	1.96%
Marine	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine	0.98%
Surface Seawater	Environmental → Aquatic → Marine → Oceanic → Photic Zone → Surface Seawater	0.98%
Deep Subsurface	Environmental → Aquatic → Marine → Oceanic → Sediment → Deep Subsurface	0.98%
Marine	Environmental → Aquatic → Marine → Coastal → Unclassified → Marine	0.98%
Sea-Ice Brine	Environmental → Aquatic → Marine → Coastal → Unclassified → Sea-Ice Brine	0.98%
Estuarine	Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine	0.98%
Marine	Environmental → Aquatic → Marine → Oil Seeps → Unclassified → Marine	0.98%

Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OID	Sample Name	Habitat Type
3300000101	Marine microbial communities from Delaware Coast, sample from Delaware MO Early Summer May 2010	Environmental
3300000117	Marine microbial communities from Delaware Coast, sample from Delaware MO Winter December 2010	Environmental
3300001450	Marine viral communities from the Pacific Ocean - LP-53	Environmental
3300001460	Marine viral communities from the Pacific Ocean - LP-28	Environmental
3300001472	Marine viral communities from the Pacific Ocean - LP-32	Environmental
3300001589	Marine viral communities from the Pacific Ocean - LP-40	Environmental
3300004457	Marine viral communities from Newfoundland, Canada MC-1	Environmental
3300006191	Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG104-DNA	Environmental
3300006749	Marine viral communities from the Subarctic Pacific Ocean - 9_ETSP_OMZ_AT15188 metaG	Environmental
3300006789	Marine viral communities from the Subarctic Pacific Ocean - 16_ETSP_OMZ_AT15313 metaG	Environmental
3300006922	Marine viral communities from the Subarctic Pacific Ocean - 11_ETSP_OMZ_AT15265 metaG	Environmental
3300006947	Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG017-DNA	Environmental
3300007276	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_31	Environmental
3300007344	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_4	Environmental
3300007559	Estuarine microbial communities from the Columbia River estuary - Freshwater metaG S.541	Environmental
3300007956	Coastal water column microbial communities from Columbia River Estuary, Oregon, USA - CMOP_DNA_1459A_0.2um	Environmental
3300007957	Coastal water column microbial communities from Columbia River Estuary, Oregon, USA - CMOP_DNA_1459A_3.0um	Environmental
3300007992	Coastal water column microbial communities from Columbia River Estuary, Oregon, USA - CMOP_DNA_1461AB_0.2um	Environmental
3300009425	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_136	Environmental
3300009428	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG Antarct_55	Environmental
3300009433	Pelagic marine microbial communities from North Sea - COGITO_mtgs_100330	Environmental
3300009436	Marine eukaryotic phytoplankton communities from Arctic Ocean - Fram Strait ARC3M Metagenome	Environmental
3300009445	Pelagic marine microbial communities from North Sea - COGITO_mtgs_110331	Environmental
3300009467	Pelagic marine microbial communities from North Sea - COGITO_mtgs_110530	Environmental
3300009512	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB11_88	Environmental
3300009608	Marine eukaryotic communities from Pacific Ocean to study complex ecological interactions - MBTS_2Apr14_M1_3um Metatranscriptome (Metagenome Metatranscriptome)	Environmental
3300009785	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB8_130	Environmental
3300010149	Marine viral communities from the Subarctic Pacific Ocean - 13B_ETSP_OMZ_AT15268_CsCl metaG	Environmental
3300010150	Marine viral communities from the Subarctic Pacific Ocean - 17B_ETSP_OMZ_AT15314_CsCl metaG	Environmental
3300010392	Coastal sediment microbial communities from Rhode Island, USA. Combined Assembly of Gp0121717, Gp0123912, Gp0123935, Gp0139423, Gp0139424, Gp0139388, Gp0139387, Gp0139386, Gp0139385	Environmental
3300010430	Marine sediment microbial communities from Gulf of Thailand under amendment with organic carbon and nitrate - JGI co-assembly of 8 samples	Environmental
3300011118	Deep subsurface microbial communities from Aarhus Bay to uncover new lineages of life (NeLLi) - Aarhus_00045 metaG	Environmental
3300012920	Marine microbial communities from the Costa Rica Dome - CRUD Field 142mm St8 metaG	Environmental
3300017713	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 14 SPOT_SRF_2010-08-11	Environmental
3300017714	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 35 SPOT_SRF_2012-08-15	Environmental
3300017725	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 21 SPOT_SRF_2011-04-29	Environmental
3300017744	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 20 SPOT_SRF_2011-02-23	Environmental
3300017746	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 12 SPOT_SRF_2010-06-29	Environmental
3300017762	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 45 SPOT_SRF_2013-07-18	Environmental
3300017771	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 48 SPOT_SRF_2013-11-13	Environmental
3300017782	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 3 SPOT_SRF_2009-08-19	Environmental
3300017783	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 2 SPOT_SRF_2009-07-10	Environmental
3300020457	Marine microbial communities from Tara Oceans - TARA_B100001113 (ERX555941-ERR599014)	Environmental
3300020469	Marine microbial communities from Tara Oceans - TARA_B100001093 (ERX555967-ERR599052)	Environmental
3300021335	Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO540	Environmental
3300021347	Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO266	Environmental
3300022061	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_12 (v2)	Environmental
3300022067	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_30 (v3)	Environmental
3300022068	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_21 (v2)	Environmental
3300022167	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_4 (v2)	Environmental
3300022178	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_31 (v3)	Environmental
3300022200	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_1 Viral MetaG (v3)	Environmental
3300022938 (restricted)	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Na_oxic_13_MG	Environmental
3300023109 (restricted)	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_122_August2016_10_MG	Environmental
3300023210 (restricted)	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Na_anoxic_4_MG	Environmental
3300024052 (restricted)	Seawater microbial communities from Jervis Inlet, British Columbia, Canada - JV7_2_5	Environmental
3300024062 (restricted)	Seawater microbial communities from Strait of Georgia, British Columbia, Canada - BC1_12_1	Environmental
3300024229	Seawater microbial communities from Monterey Bay, California, United States - 54D	Environmental
3300024236	Seawater microbial communities from Monterey Bay, California, United States - 67D	Environmental
3300024237	Seawater microbial communities from Monterey Bay, California, United States - 65D	Environmental
3300024297	Seawater microbial communities from Monterey Bay, California, United States - 71D	Environmental
3300024334	Seawater microbial communities from Monterey Bay, California, United States - 89D	Environmental
3300024340 (restricted)	Seawater microbial communities from Strait of Georgia, British Columbia, Canada - BC1_12_5	Environmental
3300024346	Whole water sample coassembly	Environmental
3300024428	Seawater microbial communities from Monterey Bay, California, United States - 32D	Environmental
3300024518 (restricted)	Seawater microbial communities from Jervis Inlet, British Columbia, Canada - JV7_2_2	Environmental
3300024519 (restricted)	Seawater microbial communities from Strait of Georgia, British Columbia, Canada - BC1_12_27	Environmental
3300025120	Marine viral communities from the Pacific Ocean - LP-28 (SPAdes)	Environmental
3300025138	Marine viral communities from the Pacific Ocean - LP-40 (SPAdes)	Environmental
3300025168	Marine viral communities from the Pacific Ocean - LP-53 (SPAdes)	Environmental
3300025276	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG Antarct_55 (SPAdes)	Environmental
3300025816	Pelagic marine microbial communities from North Sea - COGITO_mtgs_100330 (SPAdes)	Environmental
3300026505	Seawater microbial communities from Monterey Bay, California, United States - 59D	Environmental
3300026517	Seawater microbial communities from Monterey Bay, California, United States - 8D	Environmental
3300027186	Estuarine microbial communities from the Columbia River estuary - Ebb tide non-ETM metaG S.555 (SPAdes)	Environmental
3300027668	Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG104-DNA (SPAdes)	Environmental
3300027704	Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG017-DNA (SPAdes)	Environmental
3300027820	Marine sediment microbial communities from the Atlantic coast under amendment with organic carbon and nitrate - tdAd47.2 (SPAdes)	Environmental
3300027858	Oil polluted marine microbial communities from Coal Oil Point, Santa Barbara, California, USA - Sample 2 (SPAdes)	Environmental
3300027906	Marine eukaryotic phytoplankton communities from Atlantic Ocean - Tropical Atlantic ANT8 Metagenome (SPAdes)	Environmental
3300028008	Seawater microbial communities from Monterey Bay, California, United States - 1D_r	Environmental
3300028136	Seawater microbial communities from Monterey Bay, California, United States - 9D	Environmental
3300028194	Marine microbial communities from Northeast Subartic Pacific Ocean, Canada - LP_J_2011_P26_10m	Environmental
3300028297	Seawater microbial communities from Monterey Bay, California, United States - 18D	Environmental
3300028418	Seawater microbial communities from Monterey Bay, California, United States - 16D	Environmental
3300029448	Marine viral communities collected during Tara Oceans survey from station TARA_023 - TARA_E500000082	Environmental
3300033742	Sea-ice brine viral communities from Beaufort Sea near Barrow, Alaska, United States - 2018 seawater	Environmental
3300034374	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_31 (v4)	Environmental

Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
DelMOSum2010_100509894	3300000101	Marine	MQELQNEIFQEAMDTGLVNLEKRKQLLKYKNHLKHI*
DelMOWin2010_100265964	3300000117	Marine	MAQLQNELCQEAINTGIVNLEKRQQLLKYKEHLKHL*
DelMOWin2010_102123572	3300000117	Marine	MQELQNELFQEAMDTGLVNLEKRKQLLKYKNHLKHI*
JGI24006J15134_100478663	3300001450	Marine	MAELSNEIFEDAIATGKVNLEKRQQLLKYKEYLKHL*
JGI24006J15134_100509651	3300001450	Marine	AELSSEIFEDAIATGIVNLEKRKQLLKYRTHLKHL*
JGI24003J15210_100289066	3300001460	Marine	KRYVSQRMSELQNEIFQDAMATGLVNLEKRKQLLKYKEHLKNL*
JGI24003J15210_100415164	3300001460	Marine	ELSNEIFEDAIATGIVNLEKRKQLLKYRTHLKNL*
JGI24003J15210_100506211	3300001460	Marine	HRMAELSSEIFEDAIATGIVNLEKRKQLLKYRTHLKXL*
JGI24004J15324_100341191	3300001472	Marine	MAELQTEIFNDAMATGIVNLEKRQQLLKYRTHLNNL*
JGI24005J15628_100382485	3300001589	Marine	EHRMAELSNEIFEDAIATGIVNLEKRKQLLKYRTHLKHL*
JGI24005J15628_101762871	3300001589	Marine	YVEHRMAELSSEIFEDAIATGIVNLEKRQQLLKYKTHLKHL*
Ga0066224_10025524	3300004457	Marine	HRRYVTHRMAELSNEIFEDAMATGKVNLEKRQQLLKYKQHLKHL*
Ga0075447_100425424	3300006191	Marine	RMAELSNEIFEDAIATGKVNLEKRQQLLKYRTHLKNL*
Ga0098042_11374051	3300006749	Marine	QRMAQLQNELCQEAIQTGKVNLEKRQQLLKYKEHLKNL*
Ga0098054_12984591	3300006789	Marine	MAQLQNELCQEAINTGKVNLEKRQQLLKYKEHLRNL
Ga0098045_10272905	3300006922	Marine	MAQLQNELCQEAINTGKVNLEKRQQLLKYRTHLKNL*
Ga0075444_100635184	3300006947	Marine	YVTHRMAELSNEIFEDAIATGKVNLEKRQQLLKYRTHLKNL*
Ga0075444_102284373	3300006947	Marine	FLHRIYVSQRMSELQQEIFRDCMATGKVNLEKRDQLLKYKEHLKNL*
Ga0070747_11667294	3300007276	Aqueous	MQELQNEIFQEAMDTGLVNLEKRKQLLKYKNHLKH
Ga0070747_12206862	3300007276	Aqueous	MAELQNEIFQEAIDTGLVNMEKRKQLLKYKEHLKNL*
Ga0070745_11912303	3300007344	Aqueous	MQELQNEIFKDAMATGIVNLEKRKQLLKYKEHLKNL*
Ga0102828_10912821	3300007559	Estuarine	AELSNEIFEDAIATGKVNLEKRKQLLKYKEHLKNL*
Ga0105741_10843931	3300007956	Estuary Water	MFHKRYVTKRMAELQSEIFHDAMETGLVNLEKRKQLLKYRTHLKNL*
Ga0105742_10370131	3300007957	Estuary Water	YVTKRMAELQNEIFADAMATGIVNLEKRKQLLKYRTHLKNL*
Ga0105748_100996261	3300007992	Estuary Water	HRRYVEHRMAELSSEIFEDAIANGIVNLEKRKQLLKYRTHLKHL*
Ga0114997_105685061	3300009425	Marine	MAELSNEIFEDAMATGKVNLEKRQQLLKYKHHLKHL*
Ga0114915_10962963	3300009428	Deep Ocean	MAELQMELCNEAIATGKVNLEKRQQLLKYKTHIQYL*
Ga0115545_11932193	3300009433	Pelagic Marine	RMAQLQTEIFNDAMATGKVNLEKRQQLLKYRTHLNNL*
Ga0115008_105788502	3300009436	Marine	MAELQNEIFQDAMATGKVNLEKRQQLLKYKEHLRNL*
Ga0115553_13941981	3300009445	Pelagic Marine	QLQNELCQEAINTGKVNLEKRKQLLKYKNHLKHL*
Ga0115565_102875032	3300009467	Pelagic Marine	MAELSNEIFEDAIATGKVNLEKRKQLLKYKEHLRNL*
Ga0115003_101576101	3300009512	Marine	YVTHRMAELSNEIFEDAMATGKVNLEKRQQLLKYKQHLKYLNGGK*
Ga0115100_107149248	3300009608	Marine	VEHRMAQLQTEIFNDAMATGVVNLEKRQQLLKYRTHLNNL*
Ga0115001_101042871	3300009785	Marine	RKYVTHRMAELSNEIFEDAMATGKVNLEKRQQLLKYKHHLKHL*
Ga0098049_11816563	3300010149	Marine	HKRYVTKRMAELSNEILHEALSTGKVNLEKRKQLLKYKDYLKNL*
Ga0098056_10544055	3300010150	Marine	MQELQNEIFQEAMDTGLVNMEKRKQLLKYKNHLKNL*
Ga0118731_1036538404	3300010392	Marine	MAELQNEIFTDAMATGIVNLEKRQQLLKYKEHLKNL*
Ga0118731_1086859821	3300010392	Marine	VTHRMAELSNEIFEDAMATGKVNLEKRQQLLKYKEHLKHL*
Ga0118731_1108206901	3300010392	Marine	MQELQNEIFKDAMATGIVNLEKRKQLLKYKEHLRNL*
Ga0118731_1117563601	3300010392	Marine	VEYRMAQLQTEIFNDAMATGKVNLEKRQQLLKYRTHLNNL*
Ga0118731_1129280723	3300010392	Marine	HRMAELSNEIFEDAIATGKVNLEKRKQLLKYKEHLRNL*
Ga0118733_1030546671	3300010430	Marine Sediment	MAELSNEIFEDAMATGKVDLGKRQQLLKYKEHLKHL*
Ga0114922_115771733	3300011118	Deep Subsurface	FLHRVYVSKRMSELQQEIFRDCMATGKVNLEKRQQLLKYKEHLKNL*
Ga0160423_106003852	3300012920	Surface Seawater	MAELQNEIFQEAMDTGLVNLEKRKQLLKYKEHLRNL*
Ga0181391_11070051	3300017713	Seawater	AQLQTEIFNDAMATGKVNLEKRQQLLKYRTHLNNL
Ga0181412_10270571	3300017714	Seawater	EHRMAQLQTEIFNDAMATGVVNLEKRQQLLKYRTHLNNL
Ga0181398_10810423	3300017725	Seawater	MAELSSEIFEDAMATGKVNLEKRKQLLKYKEHLRNLXQTKQNQY
Ga0181397_10356745	3300017744	Seawater	HKRYVSHRMQELQNEIFQEAIDTGLVNMDKRKQLLKYKNHLKNL
Ga0181389_11001433	3300017746	Seawater	SYRMQELQNEIFQEAMDTGLVNLEKRKQLLKYKNHLKFL
Ga0181422_11614012	3300017762	Seawater	MQELQNEIFQEAMDTGLVNLEKRKQLLKYKNHLKHIXKTL
Ga0181422_11798081	3300017762	Seawater	KRMAQLQTEIFNDAMATGKVNLEKRQQLLKYRTHLNNL
Ga0181425_10469373	3300017771	Seawater	MQELQNEIFKEAMDTGLVNMEKRKQLLKYKNHLKHI
Ga0181380_10249221	3300017782	Seawater	MQELQNEIFQEAIDTGLVNMEKRKQLLKYKNHLKNL
Ga0181379_11692923	3300017783	Seawater	MAELQNEIFQEAMDTGLVNLEKRKQLLKYKEHLKNL
Ga0211643_105459633	3300020457	Marine	RMAQLQNELCQEAIDTGIVNLEKRQQLLKYKEHLKHL
Ga0211577_104513973	3300020469	Marine	VAQRMAQLQNELCQEAINTGIVNLEKRKQLLKYKEHLRNL
Ga0213867_10149686	3300021335	Seawater	MQELQNEIFQEAMDTGLVNLEKRKQLLKYKNHLKYI
Ga0213862_103171732	3300021347	Seawater	MQELQNEIFQEAMDTGLVNMDKRKQLLKYKNHLKYL
Ga0212023_10373092	3300022061	Aqueous	MQELQNELFQEAMDTGLVNLEKRKQLLKYKNHLKHI
Ga0196895_10376033	3300022067	Aqueous	YRMQELQNEIFQEAIDTGLVNMDKRKQLLKYKEHLRNL
Ga0212021_10699491	3300022068	Aqueous	SELQNEIFQEAMDTGLVNLEKRKQLLKYKEHLRNL
Ga0212020_10234254	3300022167	Aqueous	MAQLQNEIFQEAIDTGLVNLEKRKQLLKYKEHLKNL
Ga0196887_11372933	3300022178	Aqueous	AYRMQELQNEIFQEAIDTGLVNMDKRKQLLKYKEHLRNL
Ga0196901_12501473	3300022200	Aqueous	HKRYVSYRMQELQNEIFQEAMDTGLVNLEKRKQLLKYKNHLKHI
(restricted) Ga0233409_102050611	3300022938	Seawater	YVAQRMAELQNEIFQEAIDTGLVNMEKRKQLLKYKEHLKNL
(restricted) Ga0233432_100801462	3300023109	Seawater	MQELQSEIFQEAIDTGLVNMEKRKQLLKYKEHLRNL
(restricted) Ga0233412_100129481	3300023210	Seawater	HKRYVSHRMQELQNEIFQEAIDTGLVNMDKRKQLLKYKEHLRNL
(restricted) Ga0255050_100853243	3300024052	Seawater	MAELQNEIFQEAIDTGLVNMEKRKQLLKYKEHLKNL
(restricted) Ga0255039_103763941	3300024062	Seawater	HRMAQLQTEIFNDAMATGVVNLEKRKQLLKYRTHLNNL
Ga0233402_10717943	3300024229	Seawater	RYVSYRMQELQNEIFQEAMDTGLVNLEKRKQLLKYKNHLKFL
Ga0228655_10875361	3300024236	Seawater	MQELQNEIFQEAMDTGLVNLEKRKQLLKYKNHLKF
Ga0228653_11030893	3300024237	Seawater	AELQNEIFQEAMDTGLVNLEKRKQLLKYKEHLKNL
Ga0228658_10033284	3300024297	Seawater	MQELQNEIFQEAMDTGLVNLEKRKQLLKYKNHLKFL
Ga0228658_11183401	3300024297	Seawater	YVEHRMAQLQTEIFNDAMATGKVNLEKRQQLLKYRTHLNNL
Ga0228671_10473873	3300024334	Seawater	MQELQNEIFQEAMDTGLVNLEKRKQLLKYKNHLKHI
(restricted) Ga0255042_100664003	3300024340	Seawater	RHKRYVAQRMAELQSELCQEAINTGKVNLEKRQQLLKYKEHIRNL
Ga0244775_102600975	3300024346	Estuarine	QMAEIQNEIFADAMATGIVNLEKRKQLLKYKEHLKNL
Ga0233396_10882703	3300024428	Seawater	SHRKYVTKRMAELQNEIFADAMATGIVNLEKRKQLLKYKEHLKNL
(restricted) Ga0255048_104235711	3300024518	Seawater	HKRYVSHRMQELQNEIFQEAMDTGLVNMDKRKQLLKYKNHLKHL
(restricted) Ga0255046_100668555	3300024519	Seawater	HRRYVAQRMAELQNEIFQEAIDTGLVNMEKRKQLLKYKEHLKNL
Ga0209535_10126579	3300025120	Marine	RRYVEHRMAELSSEIFEDAIATGIVNLEKRKQLLKYRTHLKHL
Ga0209634_11838691	3300025138	Marine	VEHRMAELSSEIFEDAIATGIVNLEKRKQLLKYRTHLKHL
Ga0209337_10741021	3300025168	Marine	RYVEHRMAELQTEIFNDAMATGIVNLEKRQQLLKYRTHLNNL
Ga0208814_11312843	3300025276	Deep Ocean	MSELQQEIFRDCMATGKVNLEKRDQLLKYKEHLKNL
Ga0209193_10150794	3300025816	Pelagic Marine	MAQLQNELCQEAINTGKVNLEKRKQLLKYKNHLKHL
Ga0228647_10398922	3300026505	Seawater	MAELQNEIFQDAMATGLVNMEKRKQLLKYKEHLRNL
Ga0228607_11099391	3300026517	Seawater	MAQLQTEIFNDAMATGKVNLEKRQQLLKYRTHLNNL
Ga0208797_10273143	3300027186	Estuarine	YVTHRMAELSNEIFEDAIATGKVNLEKRKQLLKYKEHLKNL
Ga0209482_10602485	3300027668	Marine	MAELSNEIFEDAIATGKVNLEKRQQLLKYRTHLKNL
Ga0209816_11742463	3300027704	Marine	FLHRIYVSQRMSELQQEIFRDCMATGKVNLEKRDQLLKYKEHLKNL
Ga0209578_103016511	3300027820	Marine Sediment	RMAQLQTEIFNDAMATGKVNLEKRQQLLKYRTHLNHL
Ga0209013_104330221	3300027858	Marine	KRYVSHRMQELQNEIFQEAIDTGLVNMEKRKQLLKYKEHLRNL
Ga0209404_103821472	3300027906	Marine	MAQLQNELCQEAINTGIVNLEKRQQLLKYKEHLKNL
Ga0228674_10466884	3300028008	Seawater	QELQNEIFQEAMDTGLVNLEKRKQLLKYKNHLKFL
Ga0228608_10170535	3300028136	Seawater	YRMQELQNEIFQEAMDTGLVNLEKRKQLLKYKNHLKFL
Ga0257106_10452111	3300028194	Marine	EHRMAELSSEIFEDAIATGIVNLEKRKQLLKYRTHLKHL
Ga0228617_10057201	3300028297	Seawater	LSHRRYVAQRMAELQNEIFQEAIDTGLVNLEKRKQLLKYKE
Ga0228615_11900152	3300028418	Seawater	MQELQNEIFQEAMDTGLVNLEKRKQLLKYKNHLKHIXKTLTGYYTKA
Ga0183755_10524091	3300029448	Marine	KRYVAHRMQELQNEIFQEAMDTGLVNMEKRKQLLKYKNHLKYL
Ga0314858_171255_18_128	3300033742	Sea-Ice Brine	MAELQTEIFNDAMATGKVNLEKRQQLLKYRTHLNHL
Ga0348335_002457_940_1050	3300034374	Aqueous	MQELQNEIFQEAIDTGLVNMDKRKQLLKYKEHLRNL
Ga0348335_037587_1590_1700	3300034374	Aqueous	MQELQNEIFKDAMATGIVNLEKRKQLLKYKEHLKNL