Metagenome Family F101468

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F101468
Family Type	Metagenome
Number of Sequences	102
Average Sequence Length	49 residues
Representative Sequence	MLAKYILLTLAVVFLFAALTRGPRTIQGRTWLLIAAIFGIVSTWLFARG
Number of Associated Samples	82
Number of Associated Scaffolds	102

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	41.18 %
% of genes near scaffold ends (potentially truncated)	32.35 %
% of genes from short scaffolds (< 2000 bps)	69.61 %
Associated GOLD sequencing projects	72
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.76

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Bacteria (84.314 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere (9.804 % of family members)
Environment Ontology (ENVO)	Unclassified (33.333 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (64.706 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 55.84% β-sheet: 0.00% Coil/Unstructured: 44.16%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.76
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.76
Powered by PDBe Molstar

Structural matches with SCOPe domains

SCOP family	SCOP domain	Representative PDB	TM-score
a.25.1.2: Ribonucleotide reductase-like	d2uw1a_	2uw1	0.88058
f.63.1.1: Claudin	d3jbre_	3jbr	0.87045
a.138.1.3: Di-heme elbow motif	d3bnja_	3bnj	0.85898
a.25.1.2: Ribonucleotide reductase-like	d1za0a1	1za0	0.85112
a.25.1.0: automated matches	d2c2ua_	2c2u	0.85023

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 102 Family Scaffolds
PF14568	SUKH_6	7.84
PF15538	Ntox46	6.86
PF09346	SMI1_KNR4	5.88
PF13665	Tox-PAAR-like	2.94
PF05593	RHS_repeat	2.94
PF06715	Gp5_C	2.94
PF09937	DUF2169	1.96
PF08924	DUF1906	1.96
PF00535	Glycos_transf_2	0.98
PF05493	ATP_synt_H	0.98
PF05488	PAAR_motif	0.98
PF06904	Extensin-like_C	0.98
PF16861	Carbam_trans_C	0.98
PF00459	Inositol_P	0.98
PF15635	Tox-GHH2	0.98
PF11876	DUF3396	0.98

COG ID	Name	Functional Category	% Frequency in 102 Family Scaffolds
COG3209	Uncharacterized conserved protein RhaS, contains 28 RHS repeats	General function prediction only [R]	2.94
COG3921	Uncharacterized conserved protein, contains Extensin-like_C domain	Function unknown [S]	0.98
COG4104	Zn-binding Pro-Ala-Ala-Arg (PAAR) domain, involved in Type VI secretion	Intracellular trafficking, secretion, and vesicular transport [U]	0.98

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	84.31 %
Unclassified	root	N/A	15.69 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	84.31 %
Unclassified	root	N/A	15.69 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	84.31 %
Unclassified	root	N/A	15.69 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	42.16 %
Unclassified	root	N/A	15.69 %
environmental samples	no rank	All Organisms → cellular organisms → Bacteria → environmental samples	2.94 %
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	2.94 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	1.96 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	0.98 %
Nitrospirae	phylum	All Organisms → cellular organisms → Bacteria → Nitrospirae	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	15.69 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	7.84 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	3.92 %
uncultured bacterium 5	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium 5	2.94 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	2.94 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	1.96 %
Nitrospira	class	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira	0.98 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	0.98 %
Bacteroidetes/Chlorobi group	clade	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	15.69 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	5.88 %
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	2.94 %
uncultured bacterium 5	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium 5	2.94 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.96 %
Oceanospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales	0.98 %
Nitrospirales	order	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales	0.98 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.98 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	15.69 %
unclassified Candidatus Rokubacteria	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria	2.94 %
uncultured bacterium 5	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium 5	2.94 %
Comamonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	1.96 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	1.96 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.96 %
Cytophagia	class	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia	0.98 %
Alcanivoracaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales → Alcanivoracaceae	0.98 %
Desulfobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales	0.98 %
Nitrospiraceae	family	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	15.69 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	2.94 %
uncultured bacterium 5	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium 5	2.94 %
Caballeronia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Caballeronia	1.96 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.96 %
Ketobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales → Alcanivoracaceae → Ketobacter	0.98 %
Cytophagales	order	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales	0.98 %
Desulfobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae	0.98 %
Variovorax	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Variovorax	0.98 %
Nitrospira	genus	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	15.69 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	2.94 %
uncultured bacterium 5	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium 5	2.94 %
Caballeronia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Caballeronia	1.96 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.96 %
unclassified Ketobacter	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales → Alcanivoracaceae → Ketobacter → unclassified Ketobacter	0.98 %
Nitrospira defluvii	species	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → Nitrospira defluvii	0.98 %
Variovorax paradoxus	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Variovorax → Variovorax paradoxus	0.98 %
Desulfosarcina	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → Desulfosarcina	0.98 %
Cytophagales	order	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	15.69 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	2.94 %
uncultured bacterium 5	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium 5	2.94 %
Caballeronia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Caballeronia	1.96 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.96 %
Ketobacter sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales → Alcanivoracaceae → Ketobacter → unclassified Ketobacter → Ketobacter sp.	0.98 %
Desulfosarcina variabilis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → Desulfosarcina → Desulfosarcina variabilis	0.98 %
Nitrospira defluvii	species	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → Nitrospira defluvii	0.98 %
Variovorax paradoxus	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Variovorax → Variovorax paradoxus	0.98 %
Cytophagales	order	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales	0.98 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2140918013\|NODE_10333_length_1032_cov_6.128876	Not Available	1064	Open in IMG/M
2162886012\|MBSR1b_contig_4497275	All Organisms → cellular organisms → Bacteria → Proteobacteria	2173	Open in IMG/M
2162886013\|SwBSRL2_contig_1950724	All Organisms → cellular organisms → Bacteria → Proteobacteria	1653	Open in IMG/M
3300000033\|ICChiseqgaiiDRAFT_c0868188	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1561	Open in IMG/M
3300000033\|ICChiseqgaiiDRAFT_c0870008	All Organisms → cellular organisms → Bacteria	1102	Open in IMG/M
3300000956\|JGI10216J12902_105493796	All Organisms → cellular organisms → Bacteria → Proteobacteria	898	Open in IMG/M
3300002128\|JGI24036J26619_10006364	All Organisms → cellular organisms → Bacteria → Proteobacteria	2088	Open in IMG/M
3300002568\|C688J35102_119963948	Not Available	829	Open in IMG/M
3300003319\|soilL2_10290022	All Organisms → cellular organisms → Bacteria → Proteobacteria	2051	Open in IMG/M
3300004058\|Ga0055498_10062254	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	685	Open in IMG/M
3300004114\|Ga0062593_100322468	All Organisms → cellular organisms → Bacteria	1331	Open in IMG/M
3300004114\|Ga0062593_100480871	All Organisms → cellular organisms → Bacteria → Proteobacteria	1143	Open in IMG/M
3300004643\|Ga0062591_100011379	All Organisms → cellular organisms → Bacteria	3854	Open in IMG/M
3300004643\|Ga0062591_100332311	All Organisms → cellular organisms → Bacteria	1216	Open in IMG/M
3300005093\|Ga0062594_101143358	All Organisms → cellular organisms → Bacteria → Proteobacteria	765	Open in IMG/M
3300005093\|Ga0062594_103275950	All Organisms → cellular organisms → Bacteria → Proteobacteria	508	Open in IMG/M
3300005290\|Ga0065712_10002350	All Organisms → cellular organisms → Bacteria → Proteobacteria	7173	Open in IMG/M
3300005294\|Ga0065705_10215052	All Organisms → cellular organisms → Bacteria	1348	Open in IMG/M
3300005328\|Ga0070676_10017953	All Organisms → cellular organisms → Bacteria → Proteobacteria	3917	Open in IMG/M
3300005329\|Ga0070683_100158040	All Organisms → cellular organisms → Bacteria → Proteobacteria	2150	Open in IMG/M
3300005329\|Ga0070683_100260234	All Organisms → cellular organisms → Bacteria	1650	Open in IMG/M
3300005331\|Ga0070670_100054287	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	3440	Open in IMG/M
3300005354\|Ga0070675_101090359	All Organisms → cellular organisms → Bacteria → Proteobacteria	734	Open in IMG/M
3300005355\|Ga0070671_100506761	All Organisms → cellular organisms → Bacteria → Proteobacteria	1038	Open in IMG/M
3300005356\|Ga0070674_100024388	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	3925	Open in IMG/M
3300005356\|Ga0070674_100061626	All Organisms → cellular organisms → Bacteria → Proteobacteria	2619	Open in IMG/M
3300005367\|Ga0070667_100541557	All Organisms → cellular organisms → Bacteria	1069	Open in IMG/M
3300005543\|Ga0070672_100586077	Not Available	970	Open in IMG/M
3300005548\|Ga0070665_101329561	All Organisms → cellular organisms → Bacteria → Proteobacteria	728	Open in IMG/M
3300005616\|Ga0068852_101676189	All Organisms → cellular organisms → Bacteria → Proteobacteria	658	Open in IMG/M
3300005617\|Ga0068859_100315801	All Organisms → cellular organisms → Bacteria	1656	Open in IMG/M
3300005618\|Ga0068864_100756579	All Organisms → cellular organisms → Bacteria	952	Open in IMG/M
3300005713\|Ga0066905_102065904	Not Available	530	Open in IMG/M
3300005764\|Ga0066903_100061238	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → Desulfosarcina → Desulfosarcina variabilis	4706	Open in IMG/M
3300005840\|Ga0068870_10333948	All Organisms → cellular organisms → Bacteria → Proteobacteria	967	Open in IMG/M
3300005844\|Ga0068862_100036251	All Organisms → cellular organisms → Bacteria → Proteobacteria	4181	Open in IMG/M
3300006196\|Ga0075422_10041034	All Organisms → cellular organisms → Bacteria	1647	Open in IMG/M
3300006844\|Ga0075428_100389744	All Organisms → cellular organisms → Bacteria → Proteobacteria	1493	Open in IMG/M
3300006852\|Ga0075433_10232494	All Organisms → cellular organisms → Bacteria → Proteobacteria	1637	Open in IMG/M
3300006854\|Ga0075425_100400759	All Organisms → cellular organisms → Bacteria	1581	Open in IMG/M
3300006854\|Ga0075425_101151299	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Variovorax → Variovorax paradoxus	882	Open in IMG/M
3300006871\|Ga0075434_100386206	All Organisms → cellular organisms → Bacteria	1421	Open in IMG/M
3300006904\|Ga0075424_100028510	All Organisms → cellular organisms → Bacteria → Proteobacteria	5765	Open in IMG/M
3300009147\|Ga0114129_11952497	All Organisms → cellular organisms → Bacteria	711	Open in IMG/M
3300009553\|Ga0105249_13032869	Not Available	539	Open in IMG/M
3300010046\|Ga0126384_10045738	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	2990	Open in IMG/M
3300010047\|Ga0126382_10156140	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium 5	1569	Open in IMG/M
3300010362\|Ga0126377_11887596	All Organisms → cellular organisms → Bacteria	673	Open in IMG/M
3300010375\|Ga0105239_13569786	All Organisms → cellular organisms → Bacteria	505	Open in IMG/M
3300010399\|Ga0134127_11663433	All Organisms → cellular organisms → Bacteria → Proteobacteria	713	Open in IMG/M
3300012212\|Ga0150985_104934145	All Organisms → cellular organisms → Bacteria → Proteobacteria	1263	Open in IMG/M
3300012212\|Ga0150985_105395284	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Caballeronia	3633	Open in IMG/M
3300012212\|Ga0150985_112769762	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → Nitrospira defluvii	8139	Open in IMG/M
3300012212\|Ga0150985_121103492	Not Available	5226	Open in IMG/M
3300012469\|Ga0150984_107074510	All Organisms → cellular organisms → Bacteria	1393	Open in IMG/M
3300012469\|Ga0150984_119852737	All Organisms → cellular organisms → Bacteria	1571	Open in IMG/M
3300012899\|Ga0157299_10027159	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales	1137	Open in IMG/M
3300012944\|Ga0137410_10061427	All Organisms → cellular organisms → Bacteria	2704	Open in IMG/M
3300012951\|Ga0164300_10319960	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	820	Open in IMG/M
3300012961\|Ga0164302_11359721	All Organisms → cellular organisms → Bacteria	577	Open in IMG/M
3300014254\|Ga0075312_1077310	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	666	Open in IMG/M
3300014325\|Ga0163163_10063195	All Organisms → cellular organisms → Bacteria	3670	Open in IMG/M
3300014326\|Ga0157380_10255754	All Organisms → cellular organisms → Bacteria	1588	Open in IMG/M
3300015371\|Ga0132258_10044204	All Organisms → cellular organisms → Bacteria → Proteobacteria	10149	Open in IMG/M
3300015371\|Ga0132258_10205576	All Organisms → cellular organisms → Bacteria → Proteobacteria	4779	Open in IMG/M
3300015371\|Ga0132258_10846127	All Organisms → cellular organisms → Bacteria → Proteobacteria	2308	Open in IMG/M
3300015371\|Ga0132258_12075385	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1429	Open in IMG/M
3300015372\|Ga0132256_100435691	All Organisms → cellular organisms → Bacteria → Proteobacteria	1416	Open in IMG/M
3300015373\|Ga0132257_101664793	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales → Alcanivoracaceae → Ketobacter → unclassified Ketobacter → Ketobacter sp.	817	Open in IMG/M
3300015373\|Ga0132257_103110018	Not Available	604	Open in IMG/M
3300015373\|Ga0132257_103988681	All Organisms → cellular organisms → Bacteria	537	Open in IMG/M
3300015374\|Ga0132255_100061912	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	4928	Open in IMG/M
3300015374\|Ga0132255_100221392	All Organisms → cellular organisms → Bacteria	2689	Open in IMG/M
3300015374\|Ga0132255_101534440	Not Available	1008	Open in IMG/M
3300018081\|Ga0184625_10572678	All Organisms → cellular organisms → Bacteria	558	Open in IMG/M
3300018469\|Ga0190270_13444826	Not Available	502	Open in IMG/M
3300018476\|Ga0190274_11090498	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	877	Open in IMG/M
3300018481\|Ga0190271_12785193	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	587	Open in IMG/M
3300021344\|Ga0193719_10167788	All Organisms → cellular organisms → Bacteria	944	Open in IMG/M
3300022756\|Ga0222622_11082843	Not Available	589	Open in IMG/M
3300025315\|Ga0207697_10080812	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium 5	1369	Open in IMG/M
3300025925\|Ga0207650_10161425	All Organisms → cellular organisms → Bacteria	1776	Open in IMG/M
3300025926\|Ga0207659_10663769	Not Available	891	Open in IMG/M
3300025930\|Ga0207701_10012498	All Organisms → cellular organisms → Bacteria	8306	Open in IMG/M
3300025931\|Ga0207644_10878821	All Organisms → cellular organisms → Bacteria	751	Open in IMG/M
3300025936\|Ga0207670_10297974	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium 5	1262	Open in IMG/M
3300025937\|Ga0207669_10092521	All Organisms → cellular organisms → Bacteria → Proteobacteria	1973	Open in IMG/M
3300025944\|Ga0207661_10226420	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Caballeronia	1654	Open in IMG/M
3300025945\|Ga0207679_10146794	All Organisms → cellular organisms → Bacteria	1914	Open in IMG/M
3300025945\|Ga0207679_10834089	Not Available	841	Open in IMG/M
3300026111\|Ga0208291_1054223	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	718	Open in IMG/M
3300026142\|Ga0207698_12183948	All Organisms → cellular organisms → Bacteria	566	Open in IMG/M
3300028380\|Ga0268265_10040478	All Organisms → cellular organisms → Bacteria	3442	Open in IMG/M
3300030511\|Ga0268241_10000713	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	5735	Open in IMG/M
3300031538\|Ga0310888_10000302	All Organisms → cellular organisms → Bacteria → Proteobacteria	11428	Open in IMG/M
3300031938\|Ga0308175_101658864	Not Available	715	Open in IMG/M
3300031938\|Ga0308175_102270325	Not Available	608	Open in IMG/M
3300031943\|Ga0310885_10000355	All Organisms → cellular organisms → Bacteria	10934	Open in IMG/M
3300031944\|Ga0310884_10000674	All Organisms → cellular organisms → Bacteria → Proteobacteria	9418	Open in IMG/M
3300031996\|Ga0308176_11106321	Not Available	838	Open in IMG/M
3300032013\|Ga0310906_10000047	All Organisms → cellular organisms → Bacteria	20793	Open in IMG/M
3300034417\|Ga0364941_053040	Not Available	912	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Host-Associated	Host-Associated	52.94%
Environmental	Environmental	47.06%

Habitat	Taxonomy	Distribution
Plants	Host-Associated → Plants	52.94%
Terrestrial	Environmental → Terrestrial	44.12%
Aquatic	Environmental → Aquatic	2.94%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	43.14%
Rhizosphere	Host-Associated → Plants → Rhizosphere	28.43%
Rhizoplane	Host-Associated → Plants → Rhizoplane	23.53%
Sediment	Environmental → Aquatic → Sediment	1.96%
Marine	Environmental → Aquatic → Marine	0.98%
Floodplain	Environmental → Terrestrial → Floodplain	0.98%
Roots	Host-Associated → Plants → Roots	0.98%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	34.31%
Soil	Host-Associated → Plants → Rhizosphere → Soil	17.65%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	15.69%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	10.78%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	7.84%
Loam	Environmental → Terrestrial → Soil → Loam	6.86%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.96%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	1.96%
Wetlands	Environmental → Aquatic → Marine → Wetlands	0.98%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	0.98%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.98%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	17.65%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	15.69%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	14.71%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	10.78%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	7.84%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	6.86%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	6.86%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	5.88%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	3.92%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.96%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	1.96%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	1.96%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	0.98%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.98%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	0.98%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.98%

Habitat	Taxonomy	Distribution
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	9.80%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	7.84%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	6.86%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	6.86%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	6.86%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	5.88%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	5.88%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	3.92%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	3.92%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	3.92%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	2.94%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	2.94%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	1.96%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Corn, Switchgrass And Miscanthus Rhizosphere	1.96%
Natural And Restored Wetlands	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands	1.96%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	1.96%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere	1.96%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	1.96%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	1.96%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	1.96%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	0.98%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.98%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.98%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.98%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	0.98%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.98%
Sugarcane Root And Bulk Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Sugarcane Root And Bulk Soil	0.98%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.98%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.98%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	0.98%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.98%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.98%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	0.98%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.98%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.98%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.98%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.98%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2140918013	Soil microbial communities from Great Prairies - Iowa soil (MSU Assemblies)	Environmental	Open in IMG/M
2162886012	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1	Host-Associated	Open in IMG/M
2162886013	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk Soil	Environmental	Open in IMG/M
3300000033	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300002128	Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5	Environmental	Open in IMG/M
3300002568	Grasslands soil microbial communities from Hopland, California, USA - 2	Environmental	Open in IMG/M
3300003319	Sugarcane bulk soil Sample L2	Environmental	Open in IMG/M
3300004058	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_ThreeSqB_D1	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004643	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005290	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1	Host-Associated	Open in IMG/M
3300005294	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk Soil	Environmental	Open in IMG/M
3300005328	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG	Host-Associated	Open in IMG/M
3300005329	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG	Environmental	Open in IMG/M
3300005331	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG	Host-Associated	Open in IMG/M
3300005354	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG	Host-Associated	Open in IMG/M
3300005355	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG	Host-Associated	Open in IMG/M
3300005356	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG	Host-Associated	Open in IMG/M
3300005367	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG	Host-Associated	Open in IMG/M
3300005543	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG	Host-Associated	Open in IMG/M
3300005548	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG	Host-Associated	Open in IMG/M
3300005616	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2	Host-Associated	Open in IMG/M
3300005617	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2	Host-Associated	Open in IMG/M
3300005618	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2	Host-Associated	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005840	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2	Host-Associated	Open in IMG/M
3300005844	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2	Host-Associated	Open in IMG/M
3300006196	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1	Host-Associated	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012899	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S058-202B-2	Environmental	Open in IMG/M
3300012944	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012951	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MG	Environmental	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300014254	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNE_CattailB_D2	Environmental	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300014326	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG	Host-Associated	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300018081	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b1	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300018476	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T	Environmental	Open in IMG/M
3300018481	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 356 T	Environmental	Open in IMG/M
3300021344	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2a2	Environmental	Open in IMG/M
3300022756	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1	Environmental	Open in IMG/M
3300025315	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)	Host-Associated	Open in IMG/M
3300025925	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025926	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025930	Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)	Environmental	Open in IMG/M
3300025931	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025936	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes)	Environmental	Open in IMG/M
3300025937	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025944	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300025945	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026111	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberrySE_CattailB_D1 (SPAdes)	Environmental	Open in IMG/M
3300026142	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028380	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300030511	Bulk soil microbial communities from Mexico - Amatitan (Am) metaG (v2)	Environmental	Open in IMG/M
3300031538	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D1	Environmental	Open in IMG/M
3300031938	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R1	Environmental	Open in IMG/M
3300031943	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D2	Environmental	Open in IMG/M
3300031944	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D1	Environmental	Open in IMG/M
3300031996	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R2	Environmental	Open in IMG/M
3300032013	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D3	Environmental	Open in IMG/M
3300034417	Sediment microbial communities from East River floodplain, Colorado, United States - 17_s17	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Iowa-Corn-GraphCirc_00243460	2140918013	Soil	MTAKYILATLAVIFLIAALTRGTRTSQGLTWLLIAAIFGIVSSWLFARG
MBSR1b_0610.00007390	2162886012	Miscanthus Rhizosphere	VLAKYILAALAVVFAIAALTRGPRSPQGRTWLRVAMIF
SwBSRL2_0062.00003330	2162886013	Switchgrass Rhizosphere	LTAKYILATLAIAFLLAALTRGPRTPQGRAWLLIAAIFGIVSAWLFARG
ICChiseqgaiiDRAFT_08681882	3300000033	Soil	MLAKYILLLLAVVFLFAAVIRGTRTPQGRTWLLIACLFGIVSSWLFARG*
ICChiseqgaiiDRAFT_08700082	3300000033	Soil	MTAKYILATLAVIFLIAALTRGTRTSQGLTWLLIAAIFGIVSSWLFARG*
JGI10216J12902_1054937962	3300000956	Soil	VAILAKYILAVLAVVFAIAAVTRGPDSPQGRTWLRVAMIFTAVSVWLFVQG*
JGI24036J26619_100063643	3300002128	Corn, Switchgrass And Miscanthus Rhizosphere	MLAKYILLTLSIVFLVAALTRGPRTPQGRAWLLIAAIFGIV
C688J35102_1199639482	3300002568	Soil	MIAKYILGGLAIVFLVAALTRGPGTPQGRIWLWIAIIFGIVSSWLFVKR*
soilL2_102900222	3300003319	Sugarcane Root And Bulk Soil	MLAKYILGGVAIAFLIAALTRGPRTPQGRTWLLIAAIFGIVSSWLFAKG*
Ga0055498_100622541	3300004058	Natural And Restored Wetlands	FGGLAFVFLAAALIRGPRSAQARTWLLIAAIFGIVSSWLFAYG*
Ga0062593_1003224683	3300004114	Soil	MLAKYILLSLAIAFLLAALTRGPRTIQGRTWLLIAAIFGIVSTWLFARG
Ga0062593_1004808711	3300004114	Soil	MLAKYILLTLAVIFLFAALTRGPRTIQGRTWLLIAAIFGIVSTWL
Ga0062591_1000113792	3300004643	Soil	LTAKYILATLAIAFLLAALTRGPRTPQGRAWLLIAAIFGIVSAWLFARG*
Ga0062591_1003323113	3300004643	Soil	LAKYILLTLAVIFLFAALTRGPRTIQGRTWLLIAAIFGIVSTWLFVKG*
Ga0062594_1011433581	3300005093	Soil	LTLAVIFLFAALTRGPRTIQGRTWLLIAAIFGIVSTWLFVKG*
Ga0062594_1032759502	3300005093	Soil	VLAKYILAALAVVFAIAALTRGPRSPQGRTWLRVAMIFTAVSIWLFVRG*
Ga0065712_100023502	3300005290	Miscanthus Rhizosphere	MLAKYILLILAVAFLLAALTRGPRTIQGRTWLLIAAIFGIVSTWLFVKG*
Ga0065705_102150521	3300005294	Switchgrass Rhizosphere	SHRGSICLTAKYILATLAIAFLLAALTRGPRTPQGRAWLLIAAIFGIVSAWLFARG*
Ga0070676_100179535	3300005328	Miscanthus Rhizosphere	LTAKYILATLAIAFVLAALTRGPRTPQGRAWLLIAAIFGIVSAWLFARG*
Ga0070683_1001580404	3300005329	Corn Rhizosphere	VAGRHLEYSMLAKYILLTLAVIFLFAALTRGPRTIQGRTWLLIAAIFGIVSTWLFVKG*
Ga0070683_1002602342	3300005329	Corn Rhizosphere	MLAKYILLILAVAFLLAALTRGPRTIQGRTWLLIAAIFGIVSTWLFARG*
Ga0070670_1000542872	3300005331	Switchgrass Rhizosphere	VAGRHLEYSMLAKYILLTLAVIFLFAALTRGPRTIHGRTWLLIAAIFGIVSTWLFVKG*
Ga0070675_1010903591	3300005354	Miscanthus Rhizosphere	MLAKYILLTLAVIFLFAALTRGPRTIQGRTWLLIAAIFGIVST
Ga0070671_1005067612	3300005355	Switchgrass Rhizosphere	MLAKYILLTLAVIFLFAALTRGPRTIQGRTWLLIAAIFGIVSTWLFARG*
Ga0070674_1000243885	3300005356	Miscanthus Rhizosphere	VLAKYILAALAVVFAIAAITRGPRSPQGRTWLRVAIIFTAVSIWLFVQG*
Ga0070674_1000616265	3300005356	Miscanthus Rhizosphere	GVLAKYILAALAVVFAIAAVIRGPRSPQGRTWLRVAMILTAVSIWLFVRG*
Ga0070667_1005415573	3300005367	Switchgrass Rhizosphere	LEYSMLAKYILLTLAVIFLFAALTRGPRTIQGRTWLLIAAIFGIVSTWLFVKG*
Ga0070672_1005860773	3300005543	Miscanthus Rhizosphere	LTAKYILATLAIAFLLAALTRGPRTPQGRAWLLIAA
Ga0070665_1013295612	3300005548	Switchgrass Rhizosphere	AVIFLFAALTRGPRTIQGRTWLLIAAIFGIVSTWLFVKG*
Ga0068852_1016761891	3300005616	Corn Rhizosphere	GLAFVFLIAALTRGPRTSQGRTWLLIAAIFGIVSSWLFARR*
Ga0068859_1003158011	3300005617	Switchgrass Rhizosphere	LTAKYILATLAIAFLLAALTPGPRTPQGRAWLLIAAIFGIVSAWLFARG*
Ga0068864_1007565793	3300005618	Switchgrass Rhizosphere	KYILLTLAVIFLFAALTRGPRTIQGRTWLLIAAIFGIVSTWLFARG*
Ga0066905_1020659041	3300005713	Tropical Forest Soil	MLARYILVVLGTAFLIAGAVRGPRHPQGRTWLLIAAIFGAVSIWLFT
Ga0066903_1000612386	3300005764	Tropical Forest Soil	MLAKYILAAVGAAFLIAGVVRGPGSLQGRIWLLIAAIFGAVSLWLFATA*
Ga0068870_103339483	3300005840	Miscanthus Rhizosphere	KYILATLAIAFLVAALTRGPRTPQGRAWLLIAAIFGIVSAWLFARG*
Ga0068862_1000362513	3300005844	Switchgrass Rhizosphere	MLAKYILLTLSIVFLVAALTRGPRTPQGRAWLLIAAIFGIVSSWLFARG*
Ga0075422_100410342	3300006196	Populus Rhizosphere	LTAKYILATLATAFLLAALTRGPRTPQGRAWLLIAAIFGIVSAWLFARG*
Ga0075428_1003897442	3300006844	Populus Rhizosphere	MLAKYILLLLAVVFLFAAVIRGTRTPQGRTWLLIACIFGIVSSWLFARG*
Ga0075433_102324943	3300006852	Populus Rhizosphere	MLAKYILLLLAVLFLFAALLRGTRTPQGRTWLLIACIFGIVSSWLLARG*
Ga0075425_1004007592	3300006854	Populus Rhizosphere	MLAKYILLALAVVFLIAAVIRGPRTPQGRTWLLIATIFGIVSSWLFARG*
Ga0075425_1011512992	3300006854	Populus Rhizosphere	MLAKYILLLLAVLFLFAALLRGTRTPQGRTWLLIACIFGIVSSWLLA
Ga0075434_1003862063	3300006871	Populus Rhizosphere	MLAKYILLALAVVFLLAAVIRGPRTPQGRTWLLIATIFGIVSSWLFVRG*
Ga0075424_1000285104	3300006904	Populus Rhizosphere	MLAKYILLTLAVIFLLAALTRGPRTPQGRIWLLIAAIFGIVSSWLFARS*
Ga0114129_119524971	3300009147	Populus Rhizosphere	KYILLLLAVVFLIAALTRGPGTPQGRTWLLIACIFGIVSSWLFARG*
Ga0105249_130328691	3300009553	Switchgrass Rhizosphere	MLAKYILLTLAVIFLFAALTRGPRTIQGRTWLLIAAIFGIVSTWLFVKG*
Ga0126384_100457384	3300010046	Tropical Forest Soil	MFAKYILAAVGAAFLIAGVVRGPGSLQGRIWLLIAAIFGAVSLWLFATA*
Ga0126382_101561403	3300010047	Tropical Forest Soil	MLARYILVVLGTAFLIAGAVRGPRHPQGRTWLLIAAIFGAVSIWLFTTA*
Ga0126377_118875961	3300010362	Tropical Forest Soil	CGSTMLARYILVVLGTAFLIAGAVRGPRHPQGRTWLLIAAIFGAVSIWLFTTA*
Ga0105239_135697861	3300010375	Corn Rhizosphere	IAQRPVAGRHLEYSMLAKYILLILAVAFLIAALTRGPRTIQGRTWLLIAAIFGIVSTWLFARG*
Ga0134127_116634332	3300010399	Terrestrial Soil	VLAKYILLLLAVLFLFAALLRGTRTPQGRTWLLIACIFGIVSSWLFARG*
Ga0150985_1049341453	3300012212	Avena Fatua Rhizosphere	MLAKYILLLLAVVFLCASVVRGPRTPQGRTWLLIAIIFGIVSSWLLVRGGNGTLIPAG*
Ga0150985_1053952844	3300012212	Avena Fatua Rhizosphere	MLAKYILLLLAVVFLFASLIRGTRTPQGRIWLLIAIIFGIVSSWLLVRG*
Ga0150985_1127697621	3300012212	Avena Fatua Rhizosphere	MIAKYILLLLAIVFLFASITRGPRTPQGRTWLLIAIIFGIVSSWLLVRG*
Ga0150985_1211034924	3300012212	Avena Fatua Rhizosphere	MTAKYILAALAVAFLLATFTRGPGTPQGRIWLWIAIIFGIVSSWLFVKR*
Ga0150984_1070745102	3300012469	Avena Fatua Rhizosphere	MLAKYILLLLAVVFLFGSVVRGPRTSQGRTWLLIAVIFGVVSGWLLARG*
Ga0150984_1198527373	3300012469	Avena Fatua Rhizosphere	FLFASVVRGTRTPQGRTWLLIAVIFGIVSGWLLGRG*
Ga0157299_100271591	3300012899	Soil	LTAKYILATLAIAFLVAALTRGPRTPQGRIWLLIAAIFGIVSAWLFAR
Ga0137410_100614273	3300012944	Vadose Zone Soil	MLAKYILAGLAFVFVIAALLRGPRTPQGRTWLLIAVIFGIVSSWLFAHG*
Ga0164300_103199602	3300012951	Soil	MLAKYILLTLAVIFLIAAITRGGRRSPQGRTWLLIAAIFGIVSSWLFVRV*
Ga0164302_113597211	3300012961	Soil	MLAKYILLTLAVIFLIAAITRGGRRSPQGRTWLLIAAIFGIVSSWLFVRG*
Ga0075312_10773102	3300014254	Natural And Restored Wetlands	MAKYILAVAACAFLIAALVRGSRSPQGRIWLRVAAIFAAVSVWLFSRG*
Ga0163163_100631955	3300014325	Switchgrass Rhizosphere	MLAKYILLTLAVIFLFAALTRGPRTIHGRTWLLIAAIFGIVSTWLFVKG*
Ga0157380_102557544	3300014326	Switchgrass Rhizosphere	ALAVVFAIAALTRGPRSPQGRTWLRVAMIFTAVSIWLFVRG*
Ga0132258_1004420411	3300015371	Arabidopsis Rhizosphere	MLAKYILLTLAVVFLFAALTRGPRTIQGRTWLLIAAIFGIVSTWLFARG*
Ga0132258_102055767	3300015371	Arabidopsis Rhizosphere	MLAKYILATLAIGFLIAGAARGARSSQGRTWLVIAAIFGAVSLWLFTRF*
Ga0132258_108461273	3300015371	Arabidopsis Rhizosphere	VLAKYILAALAVVFAIAAVIRGPRSPQGRTWLRVAMILTAVSIWLFVRG*
Ga0132258_120753853	3300015371	Arabidopsis Rhizosphere	MLAKYILITLAVIFLIAALTRGPRTIQGRTWLLIAAIFGIVSSWLLARG*
Ga0132256_1004356912	3300015372	Arabidopsis Rhizosphere	VLAKYILAALAVVFAIAAVIRGPRSPQGRTWLRVAMILTAVSIWLF
Ga0132257_1016647932	3300015373	Arabidopsis Rhizosphere	MLAKYILGGLALVFLIPAITRGPRSPQGRTWLLIAAIFGIVSSWLFARG*
Ga0132257_1031100182	3300015373	Arabidopsis Rhizosphere	MLAKYILLAVAIVFLIAAITRGPRSPQGRTWLLIAAIFGLVSAWLFVGR*
Ga0132257_1039886811	3300015373	Arabidopsis Rhizosphere	RRRRQTSFRLESHRGSICLTAKYILATLAIAFLLAALTRGPRTPQGRAWLLIAAIFGIVSAWLFARG*
Ga0132255_1000619126	3300015374	Arabidopsis Rhizosphere	MLAKYILGGLALVFLIAAITRGPRSPQGRTWLLIAAIFGIVSSWLFAGG*
Ga0132255_1002213925	3300015374	Arabidopsis Rhizosphere	MFAKYILLTLAVIFLIAALTRGPRTIQGRTWLLIAAIFGIVSSWLFARG*
Ga0132255_1015344402	3300015374	Arabidopsis Rhizosphere	MLAKYILLTLAVIFLIAAIPRGPRSPQGRTWLLIAAIFGLVSAWLFVGR*
Ga0184625_105726781	3300018081	Groundwater Sediment	VLAKYILAALAVVFAIAALTRGPRSPQGRTWLRVAMIFTAVSIWLFVRG
Ga0190270_134448262	3300018469	Soil	MLAKYILAALAVVFAIAAVTRGPRSPQGRTWLRVAIIFTAVSIWLFVRG
Ga0190274_110904982	3300018476	Soil	VLAKYILAALAVVFAIAALTRGPRSPQGRTWLKVAIIFTAVSIWLFVRG
Ga0190271_127851932	3300018481	Soil	VSTAALAKYILAALAVVFAVAAITRGPRGPQGRTWLRVAIIFAAVSIWLFVQG
Ga0193719_101677882	3300021344	Soil	MLAKYVLAALGAAFLIAGAIRGPRSIQGRTWLVIAAIFGAVSVWLFAKG
Ga0222622_110828431	3300022756	Groundwater Sediment	MLAKYILLLLAVVFLFASVVRGTRTPQGRTWLLIAVIFGIVSAWLLVRG
Ga0207697_100808122	3300025315	Corn, Switchgrass And Miscanthus Rhizosphere	MLAKYILLILAVAFLIAALTRGPRTIQGRTWLLIAAIFGIVSTWLFARG
Ga0207650_101614254	3300025925	Switchgrass Rhizosphere	SRMLAKYILLTLSIVFLVAALTRGPRTPQGRAWLLIAAIFGIVSSWLFARG
Ga0207659_106637693	3300025926	Miscanthus Rhizosphere	MLAKYILLILAVAFLLAALTRGPRTIQGRTWLLIAAIFGIVS
Ga0207701_100124984	3300025930	Corn, Switchgrass And Miscanthus Rhizosphere	VAGRHLEYSMLAKYILLTLAVIFLFAALTRGPRTIQGRTWLLIAAIFGIVSTWLFVKG
Ga0207644_108788212	3300025931	Switchgrass Rhizosphere	MLAKYILLTLAVIFLFAALTRGPRTIQGRTWLLIAAIFGIVSTWLFARG
Ga0207670_102979743	3300025936	Switchgrass Rhizosphere	RACRPASCDLTMLAKYILLILAVAFLLAALTRGPRTIQGRTWLLIAAIFGIVSTWLFVKG
Ga0207669_100925213	3300025937	Miscanthus Rhizosphere	VLAKYILAALAVVFAIAAVIRGPRSPQGRTWLRVAMILTAVSIWLFVRG
Ga0207661_102264202	3300025944	Corn Rhizosphere	MLAKYILLTLAVIFLFAALTRGPRTIQGRTWLLIAAIFGIVSTWLFVKG
Ga0207679_101467941	3300025945	Corn Rhizosphere	TLAVIFLFAALTRGPRTIQGRTWLLIAAIFGIVSTWLFVKG
Ga0207679_108340892	3300025945	Corn Rhizosphere	MLAKYILLILAVAFLIAALTRGPRTIQGRTWLLIAAIFGIVSTWLFVKG
Ga0208291_10542232	3300026111	Natural And Restored Wetlands	VSVMAKYILAVAACAFLIAALVRGSRSPQGRIWLRVAAIFAAVSVWLFSRG
Ga0207698_121839482	3300026142	Corn Rhizosphere	GLAFVFLIAALTRGPRTSQGRTWLLIAAIFGIVSSWLFARR
Ga0268265_100404782	3300028380	Switchgrass Rhizosphere	MLAKYILLTLSIVFLVAALTRGPRTPQGRAWLLIAAIFGIVSAWLFARG
Ga0268241_100007131	3300030511	Soil	VLAKYILAVLAVGFLVAGAWRGRRSSQGRTWLTIALIFGVVSVWLFAKG
Ga0310888_100003022	3300031538	Soil	LTAKCILATLAIAFLVAALTRGPRTPQGRAWLLIAAIFGIVSSWLFARG
Ga0308175_1016588642	3300031938	Soil	MLAKYILLLLAVAFLFASIVRGPRTPQGRTWLLIAIIFGIVSSWLLTRG
Ga0308175_1022703251	3300031938	Soil	MTAKYILAMLAIIFLLAALTSGTRTPQGRTWLLIACIFGIVSSWLLTRG
Ga0310885_1000035510	3300031943	Soil	MLAKYILLTLSIVFLVAALTRGPRTPQGRAWLLIAAIFGIVSSW
Ga0310884_100006742	3300031944	Soil	MLAKYILLTLSIVFLVAALTRGPRTPQGRAWLLIAAIFGIVSSWLFARG
Ga0308176_111063211	3300031996	Soil	MLAKYILLLLAVAFLFASIVRGPRTPQGRTWLLIAIIFGIVSSWLLVRG
Ga0310906_1000004711	3300032013	Soil	LTAKYILATLAIAFLLAALTRGPRTPQGRAWLLIAAIFGIDSAWLFARG
Ga0364941_053040_33_185	3300034417	Sediment	MMGAKYILAALAGLFLIAAAVRGRRSPQTRIWILIAAIFGTVSFWLFAAG

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F101468

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Structural matches with SCOPe domains

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences