Metagenome Family F101467

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F101467
Family Type	Metagenome
Number of Sequences	102
Average Sequence Length	98 residues
Representative Sequence	MADNNGGTGLDLLTKATNDVAREIGEMDPDDPVRPERVKELYALTELIKLTKAQRNKLIYEKMDALAREVGSLKPRDPRRADIVNEIIRLSHLIAK
Number of Associated Samples	78
Number of Associated Scaffolds	102

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	73.53 %
% of genes near scaffold ends (potentially truncated)	33.33 %
% of genes from short scaffolds (< 2000 bps)	86.27 %
Associated GOLD sequencing projects	73
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.67

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (55.882 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil (13.725 % of family members)
Environment Ontology (ENVO)	Unclassified (32.353 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (65.686 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 58.87% β-sheet: 0.00% Coil/Unstructured: 41.13%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.67
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.67
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 102 Family Scaffolds
PF00072	Response_reg	18.63
PF01855	POR_N	1.96
PF13401	AAA_22	1.96
PF04392	ABC_sub_bind	0.98
PF02321	OEP	0.98
PF03450	CO_deh_flav_C	0.98
PF04679	DNA_ligase_A_C	0.98
PF01738	DLH	0.98

COG ID	Name	Functional Category	% Frequency in 102 Family Scaffolds
COG0674	Pyruvate:ferredoxin oxidoreductase or related 2-oxoacid:ferredoxin oxidoreductase, alpha subunit	Energy production and conversion [C]	1.96
COG1538	Outer membrane protein TolC	Cell wall/membrane/envelope biogenesis [M]	1.96
COG4231	TPP-dependent indolepyruvate ferredoxin oxidoreductase, alpha subunit	Energy production and conversion [C]	1.96
COG1793	ATP-dependent DNA ligase	Replication, recombination and repair [L]	0.98
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	0.98

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	55.88 %
All Organisms	root	All Organisms	44.12 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	55.88 %
cellular organisms	root	All Organisms → cellular organisms	44.12 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	55.88 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	44.12 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	55.88 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	22.55 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	7.84 %
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	55.88 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	21.57 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	7.84 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	55.88 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	21.57 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	7.84 %
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	55.88 %
unclassified Deltaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria	21.57 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	7.84 %
unclassified Candidatus Rokubacteria	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	55.88 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	21.57 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	7.84 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	0.98 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300004114\|Ga0062593_101370764	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	754	Open in IMG/M
3300004156\|Ga0062589_100181015	All Organisms → cellular organisms → Bacteria	1494	Open in IMG/M
3300004157\|Ga0062590_101029286	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	786	Open in IMG/M
3300004157\|Ga0062590_101574624	Not Available	663	Open in IMG/M
3300004463\|Ga0063356_102390877	Not Available	808	Open in IMG/M
3300004479\|Ga0062595_102675089	Not Available	502	Open in IMG/M
3300004643\|Ga0062591_101047285	Not Available	781	Open in IMG/M
3300005093\|Ga0062594_102712122	Not Available	549	Open in IMG/M
3300005093\|Ga0062594_102846415	Not Available	538	Open in IMG/M
3300005290\|Ga0065712_10068361	All Organisms → cellular organisms → Bacteria	11308	Open in IMG/M
3300005290\|Ga0065712_10142218	Not Available	1427	Open in IMG/M
3300005290\|Ga0065712_10801447	Not Available	512	Open in IMG/M
3300005293\|Ga0065715_10104464	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	2951	Open in IMG/M
3300005293\|Ga0065715_10419053	Not Available	860	Open in IMG/M
3300005293\|Ga0065715_10752088	Not Available	630	Open in IMG/M
3300005294\|Ga0065705_10032926	Not Available	1760	Open in IMG/M
3300005330\|Ga0070690_100148912	Not Available	1595	Open in IMG/M
3300005337\|Ga0070682_100340825	Not Available	1114	Open in IMG/M
3300005339\|Ga0070660_100000826	All Organisms → cellular organisms → Bacteria	20570	Open in IMG/M
3300005339\|Ga0070660_101011827	Not Available	702	Open in IMG/M
3300005353\|Ga0070669_100257739	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1391	Open in IMG/M
3300005353\|Ga0070669_101581145	Not Available	571	Open in IMG/M
3300005356\|Ga0070674_101155347	Not Available	686	Open in IMG/M
3300005365\|Ga0070688_100248690	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1265	Open in IMG/M
3300005367\|Ga0070667_101838951	All Organisms → cellular organisms → Bacteria	570	Open in IMG/M
3300005440\|Ga0070705_100263274	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1217	Open in IMG/M
3300005444\|Ga0070694_100076051	Not Available	2324	Open in IMG/M
3300005455\|Ga0070663_100127781	Not Available	1927	Open in IMG/M
3300005457\|Ga0070662_100144877	All Organisms → cellular organisms → Bacteria	1844	Open in IMG/M
3300005548\|Ga0070665_102120663	Not Available	566	Open in IMG/M
3300005563\|Ga0068855_100064852	Not Available	4259	Open in IMG/M
3300005563\|Ga0068855_100341856	Not Available	1650	Open in IMG/M
3300006196\|Ga0075422_10064720	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1350	Open in IMG/M
3300006358\|Ga0068871_100562085	Not Available	1034	Open in IMG/M
3300006755\|Ga0079222_10037734	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	2135	Open in IMG/M
3300006852\|Ga0075433_10638414	Not Available	934	Open in IMG/M
3300006852\|Ga0075433_11743287	Not Available	536	Open in IMG/M
3300006854\|Ga0075425_100518778	Not Available	1372	Open in IMG/M
3300006854\|Ga0075425_101301380	All Organisms → cellular organisms → Bacteria	824	Open in IMG/M
3300006854\|Ga0075425_102867150	Not Available	529	Open in IMG/M
3300006871\|Ga0075434_100041388	All Organisms → cellular organisms → Bacteria → Proteobacteria	4565	Open in IMG/M
3300006904\|Ga0075424_100047112	All Organisms → cellular organisms → Bacteria	4496	Open in IMG/M
3300006914\|Ga0075436_100286641	Not Available	1178	Open in IMG/M
3300007076\|Ga0075435_100016554	All Organisms → cellular organisms → Bacteria	5560	Open in IMG/M
3300009093\|Ga0105240_11136955	Not Available	829	Open in IMG/M
3300009098\|Ga0105245_12154281	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	611	Open in IMG/M
3300009100\|Ga0075418_11780122	Not Available	670	Open in IMG/M
3300009162\|Ga0075423_11949194	Not Available	635	Open in IMG/M
3300009545\|Ga0105237_10566396	Not Available	1143	Open in IMG/M
3300010366\|Ga0126379_13500268	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	526	Open in IMG/M
3300010373\|Ga0134128_10775748	Not Available	1063	Open in IMG/M
3300010373\|Ga0134128_13106065	Not Available	510	Open in IMG/M
3300010376\|Ga0126381_101526849	Not Available	965	Open in IMG/M
3300010396\|Ga0134126_10208568	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	2334	Open in IMG/M
3300010396\|Ga0134126_10701953	Not Available	1150	Open in IMG/M
3300010397\|Ga0134124_10750981	Not Available	970	Open in IMG/M
3300010397\|Ga0134124_10915711	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	884	Open in IMG/M
3300010397\|Ga0134124_11593874	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	683	Open in IMG/M
3300010397\|Ga0134124_13009921	Not Available	515	Open in IMG/M
3300010399\|Ga0134127_10167453	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	2014	Open in IMG/M
3300010400\|Ga0134122_10168092	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1796	Open in IMG/M
3300010401\|Ga0134121_10230892	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1612	Open in IMG/M
3300010401\|Ga0134121_10680860	Not Available	973	Open in IMG/M
3300010401\|Ga0134121_10720720	Not Available	948	Open in IMG/M
3300010403\|Ga0134123_10701522	Not Available	990	Open in IMG/M
3300012477\|Ga0157336_1014020	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	655	Open in IMG/M
3300012955\|Ga0164298_10127709	Not Available	1392	Open in IMG/M
3300012960\|Ga0164301_10450617	Not Available	915	Open in IMG/M
3300012961\|Ga0164302_10813539	Not Available	707	Open in IMG/M
3300012989\|Ga0164305_10314065	Not Available	1164	Open in IMG/M
3300013102\|Ga0157371_10649004	Not Available	787	Open in IMG/M
3300013297\|Ga0157378_13288230	Not Available	502	Open in IMG/M
3300014326\|Ga0157380_13353813	Not Available	512	Open in IMG/M
3300015077\|Ga0173483_10486212	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	655	Open in IMG/M
3300015371\|Ga0132258_12688809	All Organisms → cellular organisms → Bacteria	1242	Open in IMG/M
3300015372\|Ga0132256_100824938	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1044	Open in IMG/M
3300015372\|Ga0132256_100890308	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1006	Open in IMG/M
3300015372\|Ga0132256_101372597	Not Available	819	Open in IMG/M
3300015373\|Ga0132257_101753550	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	797	Open in IMG/M
3300015373\|Ga0132257_102402450	Not Available	684	Open in IMG/M
3300015374\|Ga0132255_103457546	Not Available	672	Open in IMG/M
3300016387\|Ga0182040_11505746	Not Available	571	Open in IMG/M
3300017792\|Ga0163161_11976332	Not Available	519	Open in IMG/M
3300025315\|Ga0207697_10237108	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	806	Open in IMG/M
3300025901\|Ga0207688_11009250	Not Available	526	Open in IMG/M
3300025904\|Ga0207647_10375915	Not Available	803	Open in IMG/M
3300025907\|Ga0207645_10045403	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	2808	Open in IMG/M
3300025917\|Ga0207660_10275904	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1333	Open in IMG/M
3300025919\|Ga0207657_10078616	All Organisms → cellular organisms → Bacteria	2777	Open in IMG/M
3300025923\|Ga0207681_10156472	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1713	Open in IMG/M
3300025927\|Ga0207687_10788043	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	810	Open in IMG/M
3300025933\|Ga0207706_10259934	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1516	Open in IMG/M
3300025942\|Ga0207689_10508571	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1010	Open in IMG/M
3300025945\|Ga0207679_10014059	All Organisms → cellular organisms → Bacteria	5251	Open in IMG/M
3300025945\|Ga0207679_10295222	All Organisms → cellular organisms → Bacteria	1395	Open in IMG/M
3300025972\|Ga0207668_10185926	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1643	Open in IMG/M
3300026116\|Ga0207674_12044011	Not Available	537	Open in IMG/M
3300027909\|Ga0209382_11000593	Not Available	872	Open in IMG/M
3300031716\|Ga0310813_10398936	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1183	Open in IMG/M
3300032421\|Ga0310812_10097654	Not Available	1204	Open in IMG/M
3300033412\|Ga0310810_10296223	All Organisms → cellular organisms → Bacteria	1742	Open in IMG/M
3300033412\|Ga0310810_10360167	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1525	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Host-Associated	Host-Associated	58.82%
Environmental	Environmental	41.18%

Habitat	Taxonomy	Distribution
Plants	Host-Associated → Plants	58.82%
Terrestrial	Environmental → Terrestrial	41.18%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	41.18%
Rhizosphere	Host-Associated → Plants → Rhizosphere	38.24%
Rhizoplane	Host-Associated → Plants → Rhizoplane	19.61%
Roots	Host-Associated → Plants → Roots	0.98%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	35.29%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	19.61%
Soil	Host-Associated → Plants → Rhizosphere → Soil	18.63%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	9.80%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	9.80%
Loam	Environmental → Terrestrial → Soil → Loam	5.88%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.98%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	25.49%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	19.61%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	18.63%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	9.80%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	9.80%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	8.82%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	5.88%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	0.98%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.98%

Habitat	Taxonomy	Distribution
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	13.73%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	12.75%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	8.82%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	7.84%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	7.84%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere	5.88%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	5.88%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	3.92%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	3.92%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	2.94%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	1.96%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.96%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	1.96%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	1.96%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	1.96%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.96%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	1.96%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	1.96%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	0.98%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.98%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.98%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.98%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.98%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere	0.98%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.98%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.98%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.98%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.98%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.98%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300004643	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005290	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1	Host-Associated	Open in IMG/M
3300005293	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1	Host-Associated	Open in IMG/M
3300005294	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk Soil	Environmental	Open in IMG/M
3300005330	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG	Environmental	Open in IMG/M
3300005337	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG	Environmental	Open in IMG/M
3300005339	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG	Host-Associated	Open in IMG/M
3300005353	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG	Host-Associated	Open in IMG/M
3300005356	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG	Host-Associated	Open in IMG/M
3300005365	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG	Environmental	Open in IMG/M
3300005367	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG	Host-Associated	Open in IMG/M
3300005440	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG	Environmental	Open in IMG/M
3300005444	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG	Environmental	Open in IMG/M
3300005455	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG	Host-Associated	Open in IMG/M
3300005457	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG	Host-Associated	Open in IMG/M
3300005548	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG	Host-Associated	Open in IMG/M
3300005563	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2	Host-Associated	Open in IMG/M
3300006196	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1	Host-Associated	Open in IMG/M
3300006358	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2	Host-Associated	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300006914	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5	Host-Associated	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300009093	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG	Host-Associated	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009545	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG	Host-Associated	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300010401	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300012477	Arabidopsis rhizosphere microbial communities from North Carolina - M.Col.3.yng.040610	Host-Associated	Open in IMG/M
3300012955	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MG	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300013102	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG	Host-Associated	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300014326	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG	Host-Associated	Open in IMG/M
3300015077	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S178-409R-2 (version 2)	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300017792	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG	Host-Associated	Open in IMG/M
3300025315	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)	Host-Associated	Open in IMG/M
3300025901	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes)	Host-Associated	Open in IMG/M
3300025904	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes)	Host-Associated	Open in IMG/M
3300025907	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025917	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025919	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025923	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025927	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025933	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025942	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025945	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025972	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026116	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300031716	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3	Environmental	Open in IMG/M
3300032421	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NN3	Environmental	Open in IMG/M
3300033412	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NC	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0062593_1013707642	3300004114	Soil	RPSVVLSSSAASILEVCINGDNNGGSGLDLLTKATNDVAREIGEMDPDDPLRPERVKELYALTELIKSTKAERNKLIYEKMDALGREIGELKPRDARRADIVNEIIRLSHLIVK*
Ga0062589_1001810154	3300004156	Soil	MPDNNGGTGLDLLTKATNDIAREVGEMDPDDPLRPERVKELYALTELIKSTKAERNKLIYEKMDALGREIGELKPRDARRADIVNEIIRLSHLIVK*
Ga0062590_1010292862	3300004157	Soil	LLTKATNDVAREIGEMDPDDPLRPERVKELYALTELIKSTKAERNKLIYEKMDALGREIGELKPRDARRADIVNEIIRLSHLIVK*
Ga0062590_1015746241	3300004157	Soil	MADTNGGIGLDLLMKAMNDIAQEIGEMDPNNPLRCERIKELHTLTELNKATRAQRNKFIYERMDALANEVGLLKPRDPRRADIVNEIIRLSHLILK*
Ga0063356_1023908771	3300004463	Arabidopsis Thaliana Rhizosphere	MHQCYNNGGTGLDLLTKATNDLAREIGEMEPDGPLRSERIKVLYALTELIKSTKAERNKFIYDKMDALASEVGALKPRGTHVEQPS*
Ga0062595_1026750891	3300004479	Soil	MPDNNGGTGLDLLAKATNDIAREIGEMDPDDPLRPERVKELYALTELIKSTKAERNKLIYEKMDALAREIDALKPRDARRADIVNEIIRLSHLILK*
Ga0062591_1010472852	3300004643	Soil	SRIHLGGMHQCYNNGGTGLDLLTKATNDLAREMEPDDPLRSERIKVLYALTELIKSTKAERNKFIYDKMDALASEVGALKPRDPRRTAIVNEIIGLSHLILM*
Ga0062594_1027121221	3300005093	Soil	MADNNGGTHGAGLDLLTKAMNDIAREIGELDPNDPLRPERIKELHALTELSKSTKAERNKFIYDKMDVLAREVDALKAEGPASSRYRE*
Ga0062594_1028464151	3300005093	Soil	MADTNGGIGLDLLMKAMNDIAQEIGEMDPNNPLRCERIKELHTLTELNKATRAQRNKFIYERMDALANEVGLLKPRDPRRADIVNEIIRLSH
Ga0065712_100683615	3300005290	Miscanthus Rhizosphere	LDLLTKATNDVAREIGEMDPDDPVQPERVKELYALTELIKLTKAQRNKLIYEKMDALAREVGSLKPRDPRRADIVNEIIRLSHSDCKPMAGQRTHSARFSTHA*
Ga0065712_101422182	3300005290	Miscanthus Rhizosphere	MHQCYNNGGTGLDLLTKATNDLAREMEPDDPLRSERIKVLYALTELIKSTKAERNKFIYDKMDALASEVGALKPRGTHVEQPS*
Ga0065712_108014472	3300005290	Miscanthus Rhizosphere	MADNNGGTGLDPVTKATNEIAREVGEMDLDDPLRSERVKELYALTELIKSTKAEQNKLIYEKMDALAREVGALKPSDARRTDIVNEIIRLSHLILK*
Ga0065715_101044645	3300005293	Miscanthus Rhizosphere	VLSSSAASILEVCINGDNNGGSGLDLLTKATNDVAREIGEMDPDDPLRPERVKELYALTELIKSTKAERNKLIYEKMDALGREIGELKPRDARRADIVNEIIRLSHLIVK*
Ga0065715_104190531	3300005293	Miscanthus Rhizosphere	MHQCYNNGGTGLDLLTKATNDLAREMEPDDPLRSERIKVLYALTELIKSTKAERNKFIYDKMDALASEVGALKPRDPRRTAIVNEIIGLSHLILM*
Ga0065715_107520881	3300005293	Miscanthus Rhizosphere	MADNNGGTHGAGLDLLTKAMNDIAREIGELDPNDPLRPERIKELHALTELSMSTKAERNKFIYEKMDALACEIGALKPRDPRRAAIVNEIIRLSHFISK*
Ga0065705_100329262	3300005294	Switchgrass Rhizosphere	MADNNNGTDLDPLTKAMNDIAREVGEMDPNDPLRCQRIKELHALTELSKSSKAERNKFIYDKMEALGRQVEALKSRDPRRADIVNEIIQLSHLISK*
Ga0070690_1001489122	3300005330	Switchgrass Rhizosphere	MADNNGGTGLDLLTKATNDVAREIGEMDPDDPVQPERVKELYALTELIKLTKAQRNKLIYEKMDALAREVGSLKPRDPRRADIMNEIIRLSHSDCKPMAGQRTHSARFSTHA*
Ga0070682_1003408251	3300005337	Corn Rhizosphere	DNNGGTGLDLLTKATNDVAREIGEMDPDDPVQPERVKELYALTELIKLTKAQRNKLIYEKMDALAREVGSLKPRDPRRADIMNEIIRLSHSDCKPMAGQRTHSARFSTHA*
Ga0070660_1000008262	3300005339	Corn Rhizosphere	LDLLTKATNDVAREIGEMDPDDPVQPERVKELYALTELIKLTKAQRNKLIYEKMDALAREVGSLKPRDPRRADIMNEIIRLSHSDCKPMAGQRTHSARFSTHA*
Ga0070660_1010118271	3300005339	Corn Rhizosphere	MADTNGGIGLDLLMKAMNDIAQEIGEMDPNNPLRCERIKELHTLTELNKATRAQRNKFIYERMDALANEVGLLKPRDPRRADIVNEIIRLSHLI*
Ga0070669_1002577392	3300005353	Switchgrass Rhizosphere	MHQWPNNNGGTALDLLTKATNDVAREIGEMDPDDPLRPERVKELYALTELIKSTKAERNKLIYEKMDALGREIGELKPRDARRADIVNEIIRLSHLIVK*
Ga0070669_1015811452	3300005353	Switchgrass Rhizosphere	MADNNGGTGLDLLTKATNDVAREIGEMDPDDPVRPERVKELYALTELIKLTKAQRNKLIYEKMDALAREIGALKSRDARRADIVNEII
Ga0070674_1011553471	3300005356	Miscanthus Rhizosphere	MADTNGGIGLDLLMKAMNDIAQEIGEMDPNNPLRCERIKELHTLTELNKATRAQRNKFIYERMDALANEVGLLKPRDPRRA
Ga0070688_1002486901	3300005365	Switchgrass Rhizosphere	MADNNGGTGLDLLTKATNDVAREIGEMDPDDPVRPERVKELYALTELIKLTKAQRNKLIYEKMDALAREVGSLKPRDPRRADIMNEIIRLSHSDCKPMAGQRTHSARFSTHA*
Ga0070667_1018389511	3300005367	Switchgrass Rhizosphere	VCINGRQQRWNWNDVAREISEMDSNDPLRPERVKELHALTELSKSTKAQRNKFIYEKMDALARELGALKPRHPRRADIVNEIIRLRRLILK*
Ga0070705_1002632742	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	MHQCYNNGGTGLDLLTKATNDLAREIGEMEPDDPLRSERIKVLYALTELIKSTKAERNKFIYDKMDALASEVGALKPRDPRRTAIVNEIIGLSH
Ga0070694_1000760515	3300005444	Corn, Switchgrass And Miscanthus Rhizosphere	MHQWPNNNGGTALDLLTKATNDVAREIGEMDPDDPVQPERVKELYALTELIKLTKAQRNKLIYEKMDALAREVGSLKPRDPRRADIVNEIIRLSHSDCKPMAGQRTHSARFSTHA*
Ga0070663_1001277815	3300005455	Corn Rhizosphere	MHQWPNNNGGTALDLLTKATNDVAREIGEMDPDDPVQPERVKELYALTELIKLTKAQRNKLIYEKMDALAREVGSLKPRDPRRADIVNEIIRLSH
Ga0070662_1001448771	3300005457	Corn Rhizosphere	LEVCINGDNNGGSGLDLLTKATNDVAREIGEMDPDDPLRPERVKELYALTELIKSTKAERNKLIYEKMDALGREIGELKPRDARRADIVNEIIRLSHLIVK*
Ga0070665_1021206631	3300005548	Switchgrass Rhizosphere	MHQWPNNNGGTALDLLTKATNDVAREIGEMDPDDPVRPERVKELYALTELIKLTKAQRNKLIYEKMDALAREVGSLKPRDPRRADIMNEIIRLSHSDCKPMAGQRTHSARFSTHA*
Ga0068855_1000648525	3300005563	Corn Rhizosphere	MHQWPNNNGGTALDLLTKATNDVAREIGEMDPDDPVQPERVKELYALTELIKLTKAQRNKLIYEKMDALAREVGSLKPRDPRRADIMNEIIRLSHSDCKPMAGQRTHSARFSTHA*
Ga0068855_1003418561	3300005563	Corn Rhizosphere	MADTNGGIGLDLLMKAMNDIAQEIGEMDPNNPLRCERIKELHTLTELNKATRAQRNKFIYERMDALANEVGLLKPRDP
Ga0075422_100647202	3300006196	Populus Rhizosphere	LDLLTEAMHDVAREIGEMDPNDPLRPERVKELYALTQLSKSIKAKRNKLIYDKMDSLAREVGALKARDARRADIVNEIIRLSHLIVK*
Ga0068871_1005620852	3300006358	Miscanthus Rhizosphere	MADNNGGTGLDLLTKATNDVAREIGEMDPDDPVQPERVKELYALTELIKLTKAQRNKLIYEKMDALAREVGSLKPRDPRRADIVNEIIRLSHSDCKPMAGQRTHSARFSTHA*
Ga0079222_100377342	3300006755	Agricultural Soil	MHQCYNNGGTGLDLLTKATNDLAREIGEMEPDDPLRSERIKVLYALTELIKSTKAERNKFIYDKMDALASEVGALKPRDPRRTAIVNEIIGLSHLILM*
Ga0075433_106384141	3300006852	Populus Rhizosphere	LDLLIKATEDVAREIGEMDPNDPLRPQRVAELYALTHLSRSLKAKRNKLVYDKMDALARDVGALKPRDARRADIVNEIIRLSRLIVN*
Ga0075433_117432872	3300006852	Populus Rhizosphere	MADNNNGTDLDPLTKAMNDIAREVGEMDPNDPLRCQRIKELHALTELSKSSKAERNKFIYDKMEALGRQVEALKSRDPRRADIVNAIVRLSHLILKCMLAMVANGSL*
Ga0075425_1005187784	3300006854	Populus Rhizosphere	MADNNGGTHGAGLDLLTKAMNDIAREIGELDPNDPLRPERIKELHALTELSKSTKAERNKFIYEKMDALACEIGALKPRDPRRAAIVNEIIRLSHL
Ga0075425_1013013801	3300006854	Populus Rhizosphere	NGGIGLDLLMKAMNDIAQEIGEMDPNNPLRCERIKELHTLTELNNATRAQRNKFIYERMDALAHEVGLLKPRDPRRADIVNEIIRLSHLI*
Ga0075425_1028671501	3300006854	Populus Rhizosphere	TGLDLLTEAMHDVAREIGEMDPNDPLRPERVKELYALTQLSKSIKAKRNKLIYDKMDSLAREVGALKARDARRADIVNEIIRLSHLIVK*
Ga0075434_1000413882	3300006871	Populus Rhizosphere	MPDNNGGTGLDLLTEAMHDVAREIGEMDPNDPLRPERVKELYALTQLSKSIKAKRNKLIYDKMDSLAREVGALKARDARRADIVNEIIRLSHLIVK*
Ga0075424_1000471124	3300006904	Populus Rhizosphere	VETGLDLLTEAMHDVAREIGEMDPNDPLRPERVKELYALTQLSKSIKAKRNKLIYDKMDSLAREVGALKARDARRADIVNEIIRLSHLIVK*
Ga0075436_1002866411	3300006914	Populus Rhizosphere	MPDNNGGTGLDLLTEAMHDVAREIGEMDPNDPLRPERVKELYALTQLSKSIKAKRNKLIYDKMDSLAREVGALKARDARRADIVNEIIR
Ga0075435_1000165544	3300007076	Populus Rhizosphere	MPDNNGGTGLDLLIKATEDVAREIGEMDPNDPLRPQRVAELYALTHLSRSLKAKRNKLVYDNMDALARDVGALKPRDARRADIVNEIIRLSRLIVN*
Ga0105240_111369551	3300009093	Corn Rhizosphere	LEVCINGDNNGGSGLDLLTKATNDVAREIGEMDPDDPLRPERVKELYALTELIKSTKAERNKLIYEKMDALGREIGELKPRDARRA
Ga0105245_121542812	3300009098	Miscanthus Rhizosphere	TKATNDVAREIGEMDPDDPLRPERVKELYALTELIKSTKAERNKLIYEKMDALGREIGELKPRDARRADIVNEIIRLSHLIVK*
Ga0075418_117801222	3300009100	Populus Rhizosphere	MPGNNGGTGFDLLTEATHDVAREIGEMDPNDPLRPERVKELYALTQLGKSIQAKRNKLICDKMDALAREVGALKPRDARRADIVNEIIRLSHLIVK*
Ga0075423_119491941	3300009162	Populus Rhizosphere	MHQWPNNNGGTALDLLTKATNDVAREIGEMDTDEPVQPERVKELYALTELIKLTKAQRNKLIYEKMDALAREVGSLKPRDPRRADIVNEIIRLSHSDCKPMAGQRTHSARFSTHA*
Ga0105237_105663963	3300009545	Corn Rhizosphere	MHQWPNNNGGTALDLLTKATNDVAREIGEMDPDDPVQPERVKELYALTELIKLTKAQRNKLIYEKMDALAREVGALKPSDARRTDIVNEIIRLSHLILK*
Ga0126379_135002681	3300010366	Tropical Forest Soil	GPSTWRYASMADNNNRIDLDPLTKAMNNITREIGEMDPNDPLRCERIKQLHALTEFSKLTKAERDKIIYDKMDALGCEVEALKPKDPRRADIVKEIIRLNHLISK*
Ga0134128_107757481	3300010373	Terrestrial Soil	MPDNNGGTGLDLLTKATNDIAREVGEMDPDDPLRPERVKELYALTELIKSTKAERNKFIYDKMDALASEVGALKPRDPRRTAIVNEIIGLSHLILM*
Ga0134128_131060651	3300010373	Terrestrial Soil	MHQWPNNNGGTALDLLTKATNDVAREIGEMDPDDPVQPERVKELYALTELIKLTKAQRNKLIYEKMDALAREVGPLKPRDARRTDIVNEIIRLSHLILR*
Ga0126381_1015268492	3300010376	Tropical Forest Soil	MADNDDRSGLDLLTKVKNDFALEIGEMDPNDPLRSKRVKELHALTELSKSIKDERNKLIYKKMEALAREVGALKRRDPRRADIVKEIIRL*
Ga0134126_102085686	3300010396	Terrestrial Soil	MADTNGGIGLDLLMKAMNDIAQEIGEMDPNNPLRCERIKELHTLTELNNASRAERNKFIYERMGALANEVGLLKPRDPRRADIVNEI
Ga0134126_107019531	3300010396	Terrestrial Soil	MADNNGGTGLDPVTKATNEIAREVGEMDLDDPLRPERVKELYALTELIKSTKAEQNKLIYEKMDALAREVGPLKPRDARRTDIVNEIIRLSHLILR*
Ga0134124_107509813	3300010397	Terrestrial Soil	MADNNGGTGLDLLTKATNDVAREIGEMDPDDPVRPERVKELYALTELIKLTKAQRNKLIYEKMDALAREVGSLKPRDPRRADIMNEIIRLSHSDCKPMAGQRTHS
Ga0134124_109157112	3300010397	Terrestrial Soil	MADTNGGIGLDLLMKAMNDIAQEIGEMDPNNPLRCERIKELHTLTELNNASRAERNKFIYERMGALANEVGLLKPRDPRRADIVNEIIRLSHLI*
Ga0134124_115938742	3300010397	Terrestrial Soil	MADNNNGTDLDPLTKAINDIAREVGEMDPNDPLRCQRIKELHALTELSKSSKAERNKFIYDKMEALGREVEALKSRDPRRADIVNEIIRLSHLISK*
Ga0134124_130099211	3300010397	Terrestrial Soil	TKAMNDIAREIGELDPNDPLRPERIKELHALTELSMSTKAERNKFIYEKMDALACEIGALKPRDPRRAAIVNEIIRLSHIISK*
Ga0134127_101674531	3300010399	Terrestrial Soil	LEVCINGDNNGGSGLDLLTKATNDVAREIGEMDPDDPVRPERVKELYALTELIKLTKAQRNKLIYEKMDALAREVGSLKPRDPRRADIVNEIIRLSHSDCNPMAGQRTHSARFSTHA*
Ga0134122_101680922	3300010400	Terrestrial Soil	MHQCYNNGGAGLDLLTKATNDLAREIGEMEPDDPLRSERIKVLYALTELIKSTKAERNKFIYDKMDALASEVGALKPRDPRRTAIVNEIIGLSHLILM*
Ga0134121_102308923	3300010401	Terrestrial Soil	MHQCYNNGGTGLDLLTKATNDLAREIGEMEPDDPLRSERIKVLYALTELIKSTKAERNKFIYDKMDALASEVGALKPRDPRRTA
Ga0134121_106808602	3300010401	Terrestrial Soil	MADNNGGSGLDLLTKATNEIAREVGEMDLDDPLRPERVKELYALTELIKSTKAEQNKLIYEKMDALAREVGSLKPRDPRRADIVNEIIRLSHSDCKPMAGQRTHSARFSTHA*
Ga0134121_107207202	3300010401	Terrestrial Soil	MADTNGGIGLDLLMKAMNDIAQEIGEMDPNDPLRCERIKELHTLTELNNVTKAQRNKFIYERMDALANAVGSLKPRDPRRADIVNEIIRLSHLILK*
Ga0134123_107015221	3300010403	Terrestrial Soil	MHQCYNNGGTGLDLLTKATNDLAREIGEMEPDDPLRSDRIKVLYALTELIKSTKAERNKFIYDKMDALASEVGALKPRGTHVEQPS*
Ga0157336_10140202	3300012477	Arabidopsis Rhizosphere	MADNNGEAGLDLLTKAMNDIAREIGEMDPNDPLRSERVKELHALTELSKSTKAERNKFIYDKMDALGREIETLKARDPRRADIVNEIIRLSHLIVK*
Ga0164298_101277093	3300012955	Soil	MADNNGGTHGAGLDLLTKAMNDIAREIGELDPNDPLRPERIKELHALTELSKSTKAERNKFIYEKMDALACEIGALKPRDPRRAAIVNEIIRLSHIISK*
Ga0164301_104506172	3300012960	Soil	MADNNGGTHGVGLDLLTKEMNDIAREIGELDPNDPLRPERIKELHALTELSKSTKAERNKFIYEKMDALACEIGALKPRDPPRAAIVNEIIRLSHIISK*
Ga0164302_108135392	3300012961	Soil	MADNNGGTHGAGLDLLTKAMNDIAREIGELDPNDPLRPERIKELHALTELSKSTKAERNKFIYEKMDALACEIGALKPRDPRRATIVNEIIRLSHLISK*
Ga0164305_103140653	3300012989	Soil	MELADLLTKAMNDIAREIGELDPNDPLRPERIKELHALTELSKSTKAERNKFIYEKTNALVCEIGALKPRDPPRAAIVNEIIRLSHIISK*
Ga0157371_106490042	3300013102	Corn Rhizosphere	MHQWPNNNGGTALDLLTKATNDVAREIGEMDPDDPVQPERVKELYALTELIKLTKAQRNKLIYEKMDALAREVGPLKPRDARRTDIVNEIIRLSHLILK*
Ga0157378_132882301	3300013297	Miscanthus Rhizosphere	RYASMPGNNSGTGLDLLTKAMNDIAQEIGEMDPNDPLRCERIKELHTLTELNNVTKAQRNKFIYERMDALANAVGSLKPRDPRRADIVNEIIRLSHLILK*
Ga0157380_133538131	3300014326	Switchgrass Rhizosphere	MHQWPNNNGGTALVLLTKATNDVAREIGEMDPDDPVQPERVKELYALTELIKLTKAQRNKLIYEKMDALAREVGSLKPRDPRRADIMNEIIRLSHSDCK
Ga0173483_104862121	3300015077	Soil	MADNNGGSWLDLLTKATNDVAREIGEMDPDDPVRPERVKELYALTELIKLTKAQRNKLIYEKMDALAREIGALKSRDARRADIVNEIIRLSHLIVK*
Ga0132258_126888092	3300015371	Arabidopsis Rhizosphere	MADNNGGTGLDPLTTATNDIAREIGEMDPNDPLRSERVKELHALTELSKSTKAERNKFIYDKMDALGREIETLKARDPRRADIVNEIIRLSHLIVK*
Ga0132256_1008249382	3300015372	Arabidopsis Rhizosphere	MADNNAGTGLDLLAKATSDIAREIGEMDPDVALRPEHVKELYALTELSKSTKAERNKFIYEKMEALAREVGALKPRDARRADIVNEIIRLSYLIVK*
Ga0132256_1008903082	3300015372	Arabidopsis Rhizosphere	MNHIAREVGEMDPNDPLRCQRIKELHALTELSKSSKAERNKFIYDKMEALGREVEALKSRDPRRADIVNEIIRLSHLISK*
Ga0132256_1013725972	3300015372	Arabidopsis Rhizosphere	MADNNGGTGLDPLTTATNDIAREIGEMDPNDPLRSERVKELHALTELSKSTKAKRNKFIYDKMDALGREIETLKARDPRRADIVNEIIRLSHLIVK*
Ga0132257_1017535502	3300015373	Arabidopsis Rhizosphere	TKAMNDIAREVGEMDPNDPLRCQRIKELHALTELSKSSKAERNKFIYDKMEALGREVEALKSKDPRRADIVNEIIRLSHLISK*
Ga0132257_1024024502	3300015373	Arabidopsis Rhizosphere	LEVCINADNNAGTGLDLLAKATSDIAREIGEMDPDVALRPEHVKELYALTELSKSTKAERNKFIYEKMEALAREVGALKPRDARRADIVNEII
Ga0132255_1034575461	3300015374	Arabidopsis Rhizosphere	VETGLDLLTEAMHDVAREIGEMDPNDPLRPERVKELYALTQLSKSIKAKRNKLIYDKMDSLAREVGALKARDARRADIVNEIIRLS
Ga0182040_115057461	3300016387	Soil	MADNNNGTDLDPLTKAMNDIAREIGEMDPNDPLRCERVKQLHALTELSKLTKAERDKIIYDKMDALGCEVEALKPKDPRRAD
Ga0163161_119763321	3300017792	Switchgrass Rhizosphere	MADNNGGTGLDLLTKATNDVAREIGEMDPDDPVRPERVKELYALTELIKLTKAQRNKLIYEKMDALAREVGSLKPRDPRRADIMNEIIRLSHSDCKPMAGQRTHSARFSTHA
Ga0207697_102371081	3300025315	Corn, Switchgrass And Miscanthus Rhizosphere	MADNNGGTGLDLLTKATNDVAREIGEMDPDDPVRPERVKELYALTELIKLTKAQRNKLIYEKMDALAREVGSLKPRDPRRADIVNEIIRLSHLIAK
Ga0207688_110092501	3300025901	Corn, Switchgrass And Miscanthus Rhizosphere	LEVCINGDNNGGSGLDLLTKATNDVAREIGEMDPDDPLRPERVKELYALTELIKSTKAERNKLIYEKMDALGREIGELKPRDARRADIVNEIIRLSHSD
Ga0207647_103759151	3300025904	Corn Rhizosphere	MADTNGGIGLDLLMKAMNDIAQEIGEMDPDDPVQPERVKELYALTELIKLTKAQRNKLIYEKMDALAREVGSLKPRDPRRADIVNEIIRLSHSDCKPMAGQRTHSARFSTHA
Ga0207645_100454035	3300025907	Miscanthus Rhizosphere	MHQWPNNNGGTALDLLTKATNDVAREIGEMDPDDPVQPERVKELYALTELIKLTKAQRNKLIYEKMDALAREVGSLKPRDPRRADIVNEIIRLSHSDCKPMAGQRTHSARFSTHA
Ga0207660_102759042	3300025917	Corn Rhizosphere	MADNNGGTGLDLLTKATNDIAREVGEMDPDDPLRPERVKELYALTELIKSTKAERNKLIYEKMDALGREIGELKPRDARRADIVNEMIRLSRLILK
Ga0207657_100786165	3300025919	Corn Rhizosphere	VLSSSAASILEVCINGDNNGGSGLDLLTKATNDVAREIGEMDPDDPLRPERVKELYALTELIKSTKAERNKLIYEKMDALGREIGELKPRDARRADIVNEIIRLSHLIVK
Ga0207681_101564724	3300025923	Switchgrass Rhizosphere	MHQWPNNNGGTALDLLTKATNDVAREIGEMDPDDPLRPERVKELYALTELIKSTKAERNKLIYEKMDALGREIGELKPRDARRADIVNEIIRLSHLIVK
Ga0207687_107880431	3300025927	Miscanthus Rhizosphere	LDLLTKATNDVAREIGEMDPDDPLRPERVKELYALTELIKSTKAERNKLIYEKMDALGREIGELKPRDARRADIVNEIIRLSHLIVK
Ga0207706_102599342	3300025933	Corn Rhizosphere	LDLLTKATNDVAREIGEMDPDDPVQPERVKELYALTELIKLTKAQRNKLIYEKMDALAREVGSLKPRDPRRADIMNEIIRLSHSDCKPMAGQRTHSARFSTHA
Ga0207689_105085712	3300025942	Miscanthus Rhizosphere	MHQWPNNNGGTALDLLTKATNDVAREIGEMDPDDPVQPERVKELYALTELIKLTKAQRNKLIYEKMDALAREVGSLKPRDPRRADIVNEIIRLSHLIVK
Ga0207679_100140594	3300025945	Corn Rhizosphere	FSRIYLGGMHQWPNNNGGTALDLLTKATNDVAREIGEMDPDDPVQPERVKELYALTELIKLTKAQRNKLIYEKMDALAREVGSLKPRDPRRADIMNEIIRLSHSDCKPMAGQRTHSARFSTHA
Ga0207679_102952221	3300025945	Corn Rhizosphere	MADNNNGTDLDPLTKAMNDIAREVGEMDPNDPLRCQRIKELHALTELSKSSKAERNKFIYDKMEALGRQVEALKSRDPRRADIVNEIIQLSHLISK
Ga0207668_101859264	3300025972	Switchgrass Rhizosphere	MADNNGGTGLDLLTKATNDVAREIGEMDPDDPLRPDRVKELYALTELIKLTKVKRNKLIYEKMDALGREIGELKPRDARRADIVNEIIRLSHLIVK
Ga0207674_120440111	3300026116	Corn Rhizosphere	ALDLLTKATNDVAREIGEMDPDDPVQPERVKELYALTELIKLTKAQRNKLIYEKMDALAREVGSLKPRDPRRADIMNEIIRLSHSDCKPMAGQRTHSARFSTHA
Ga0209382_110005933	3300027909	Populus Rhizosphere	MPDNNGGTGLDLLIKATEDVAREIGEMDPNDPLRPQRVAELYALTHLSRSLKAKRNKLVYDKMDALARDVGALKPRDARRADIVNEIIRLSRLIVN
Ga0310813_103989361	3300031716	Soil	MADNNNGTDLDPLTKAMNDIAREVGEMDPNDPLRCQRIKELHALTELSKSSKAEHNKFIYDKMEALGREVEALKSRDPRRADIVNEIIRLSHLISK
Ga0310812_100976541	3300032421	Soil	MHQWPNNNGGTALDLLTKATNDVAREIGEMDPDDPVQPERVKELYALTELIKLTKAQRNKLIYEKMDALAREVGSLKPRDPRRADIMNEIIRLSHSDCKPMAGQRTHSARFSTHA
Ga0310810_102962232	3300033412	Soil	MADNNGGTGLDPVTKATNEIAREVGEMDLDDPLRSERVKELYALTELIKSTKAEQNKLIYEKMDALAREVGALKPSDARRTDIVNEIIRLSHLILK
Ga0310810_103601672	3300033412	Soil	MADNNNGTDLDPLTKAMNHIAREVGEMDPNDPLRCQRIKELHALTELSKSSKAEHNKFIYDKMEALGREVEALKSRDPRRADIVNEIIRLSHLISK

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F101467

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences