Metagenome Family F101462

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F101462
Family Type	Metagenome
Number of Sequences	102
Average Sequence Length	64 residues
Representative Sequence	MGLKVRWFRRRPSDDEMREELEAHVAMRAEHDRVDEAAARRRLGNLLHTRESMRRVWIAEWWDALRQ
Number of Associated Samples	87
Number of Associated Scaffolds	102

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	88.12 %
% of genes near scaffold ends (potentially truncated)	93.14 %
% of genes from short scaffolds (< 2000 bps)	96.08 %
Associated GOLD sequencing projects	81
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.59

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Bacteria (78.431 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere (17.647 % of family members)
Environment Ontology (ENVO)	Unclassified (33.333 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (58.824 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 60.00% β-sheet: 0.00% Coil/Unstructured: 40.00%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.59
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.59
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 102 Family Scaffolds
PF03551	PadR	55.88
PF02687	FtsX	20.59
PF12704	MacB_PCD	5.88
PF12543	DUF3738	4.90
PF08240	ADH_N	1.96
PF08241	Methyltransf_11	0.98
PF13557	Phenol_MetA_deg	0.98
PF01869	BcrAD_BadFG	0.98
PF07714	PK_Tyr_Ser-Thr	0.98
PF12770	CHAT	0.98
PF00107	ADH_zinc_N	0.98
PF07158	MatC_N	0.98

COG ID	Name	Functional Category	% Frequency in 102 Family Scaffolds
COG1695	DNA-binding transcriptional regulator, PadR family	Transcription [K]	55.88
COG1733	DNA-binding transcriptional regulator, HxlR family	Transcription [K]	55.88
COG1846	DNA-binding transcriptional regulator, MarR family	Transcription [K]	55.88
COG0515	Serine/threonine protein kinase	Signal transduction mechanisms [T]	3.92
COG0471	Di- and tricarboxylate antiporter	Carbohydrate transport and metabolism [G]	0.98

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	78.43 %
Unclassified	root	N/A	21.57 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	78.43 %
Unclassified	root	N/A	21.57 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	78.43 %
Unclassified	root	N/A	21.57 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	30.39 %
Unclassified	root	N/A	21.57 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1.96 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.98 %

Name	Rank	Taxonomy	Distribution
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	22.55 %
Unclassified	root	N/A	21.57 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	1.96 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.98 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	21.57 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	17.65 %
Bryobacterales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	3.92 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.96 %
Rhodocyclales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales	0.98 %
Acidimicrobiia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	21.57 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	17.65 %
Solibacteraceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae	3.92 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.96 %
Acidimicrobiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales	0.98 %
Rhodocyclaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales → Rhodocyclaceae	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	21.57 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	17.65 %
Candidatus Sulfopaludibacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter	2.94 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.96 %
Candidatus Solibacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter	0.98 %
Iamiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Iamiaceae	0.98 %
Niveibacterium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales → Rhodocyclaceae → Niveibacterium	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	21.57 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	17.65 %
unclassified Candidatus Sulfopaludibacter	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter	2.94 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.96 %
Iamia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Iamiaceae → Iamia	0.98 %
Niveibacterium umoris	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales → Rhodocyclaceae → Niveibacterium → Niveibacterium umoris	0.98 %
Candidatus Solibacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	21.57 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	17.65 %
Candidatus Sulfopaludibacter sp. SbA3	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA3	2.94 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.96 %
unclassified Iamia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Iamiaceae → Iamia → unclassified Iamia	0.98 %
Niveibacterium umoris	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales → Rhodocyclaceae → Niveibacterium → Niveibacterium umoris	0.98 %
Candidatus Solibacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	21.57 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	17.65 %
Candidatus Sulfopaludibacter sp. SbA3	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA3	2.94 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.96 %
Iamia sp. SCSIO 61187	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Iamiaceae → Iamia → unclassified Iamia → Iamia sp. SCSIO 61187	0.98 %
Niveibacterium umoris	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales → Rhodocyclaceae → Niveibacterium → Niveibacterium umoris	0.98 %
Candidatus Solibacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter	0.98 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2228664021\|ICCgaii200_c0778330	All Organisms → cellular organisms → Bacteria	665	Open in IMG/M
3300000178\|FW301_c1010521	All Organisms → cellular organisms → Bacteria	1091	Open in IMG/M
3300000364\|INPhiseqgaiiFebDRAFT_104639253	All Organisms → cellular organisms → Bacteria	635	Open in IMG/M
3300000559\|F14TC_101030223	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter	1734	Open in IMG/M
3300000891\|JGI10214J12806_12452233	Not Available	691	Open in IMG/M
3300002122\|C687J26623_10177847	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	588	Open in IMG/M
3300002124\|C687J26631_10326039	All Organisms → cellular organisms → Bacteria	506	Open in IMG/M
3300004463\|Ga0063356_100885937	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1258	Open in IMG/M
3300004643\|Ga0062591_102396103	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	553	Open in IMG/M
3300005093\|Ga0062594_101441155	All Organisms → cellular organisms → Bacteria	702	Open in IMG/M
3300005093\|Ga0062594_102670688	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	552	Open in IMG/M
3300005288\|Ga0065714_10145290	All Organisms → cellular organisms → Bacteria	1142	Open in IMG/M
3300005289\|Ga0065704_10729470	All Organisms → cellular organisms → Bacteria	550	Open in IMG/M
3300005332\|Ga0066388_106461892	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	591	Open in IMG/M
3300005341\|Ga0070691_10706183	All Organisms → cellular organisms → Bacteria	606	Open in IMG/M
3300005343\|Ga0070687_100918299	All Organisms → cellular organisms → Bacteria	629	Open in IMG/M
3300005353\|Ga0070669_101373761	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	613	Open in IMG/M
3300005365\|Ga0070688_100390649	All Organisms → cellular organisms → Bacteria	1028	Open in IMG/M
3300005365\|Ga0070688_100853977	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	715	Open in IMG/M
3300005444\|Ga0070694_101362735	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	598	Open in IMG/M
3300005445\|Ga0070708_102189503	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	511	Open in IMG/M
3300005468\|Ga0070707_102247144	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	513	Open in IMG/M
3300005544\|Ga0070686_100837222	All Organisms → cellular organisms → Bacteria	744	Open in IMG/M
3300005544\|Ga0070686_101569432	All Organisms → cellular organisms → Bacteria	556	Open in IMG/M
3300005617\|Ga0068859_102535405	Not Available	564	Open in IMG/M
3300005718\|Ga0068866_10585082	All Organisms → cellular organisms → Bacteria	751	Open in IMG/M
3300005719\|Ga0068861_101965843	All Organisms → cellular organisms → Bacteria	583	Open in IMG/M
3300005843\|Ga0068860_101260570	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	760	Open in IMG/M
3300006058\|Ga0075432_10191396	All Organisms → cellular organisms → Bacteria	805	Open in IMG/M
3300006196\|Ga0075422_10152400	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	924	Open in IMG/M
3300006237\|Ga0097621_100826378	All Organisms → cellular organisms → Bacteria	860	Open in IMG/M
3300006844\|Ga0075428_100201912	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2149	Open in IMG/M
3300006844\|Ga0075428_102458518	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	534	Open in IMG/M
3300006845\|Ga0075421_101535374	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	727	Open in IMG/M
3300006852\|Ga0075433_11642025	All Organisms → cellular organisms → Bacteria	554	Open in IMG/M
3300006854\|Ga0075425_101260601	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	839	Open in IMG/M
3300006880\|Ga0075429_100575538	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	987	Open in IMG/M
3300006880\|Ga0075429_100660262	All Organisms → cellular organisms → Bacteria	916	Open in IMG/M
3300007004\|Ga0079218_11668451	All Organisms → cellular organisms → Bacteria	704	Open in IMG/M
3300007076\|Ga0075435_101726324	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	549	Open in IMG/M
3300009100\|Ga0075418_10944200	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	933	Open in IMG/M
3300009148\|Ga0105243_10730911	Not Available	968	Open in IMG/M
3300009156\|Ga0111538_10840996	Not Available	1162	Open in IMG/M
3300009156\|Ga0111538_11498866	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA3	850	Open in IMG/M
3300009156\|Ga0111538_11688174	All Organisms → cellular organisms → Bacteria	798	Open in IMG/M
3300009156\|Ga0111538_12888906	Not Available	601	Open in IMG/M
3300009162\|Ga0075423_12164250	Not Available	604	Open in IMG/M
3300009177\|Ga0105248_10916633	All Organisms → cellular organisms → Bacteria	989	Open in IMG/M
3300009177\|Ga0105248_13004561	All Organisms → cellular organisms → Bacteria	537	Open in IMG/M
3300009806\|Ga0105081_1091597	Not Available	505	Open in IMG/M
3300010397\|Ga0134124_12730276	Not Available	537	Open in IMG/M
3300012892\|Ga0157294_10115862	Not Available	707	Open in IMG/M
3300012905\|Ga0157296_10065836	All Organisms → cellular organisms → Bacteria	900	Open in IMG/M
3300012906\|Ga0157295_10330039	All Organisms → cellular organisms → Bacteria	544	Open in IMG/M
3300012911\|Ga0157301_10374806	Not Available	544	Open in IMG/M
3300012951\|Ga0164300_11122682	All Organisms → cellular organisms → Bacteria	515	Open in IMG/M
3300014969\|Ga0157376_11801694	Not Available	648	Open in IMG/M
3300015077\|Ga0173483_10536537	All Organisms → cellular organisms → Bacteria	631	Open in IMG/M
3300015200\|Ga0173480_10128430	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1268	Open in IMG/M
3300015371\|Ga0132258_12430905	All Organisms → cellular organisms → Bacteria	1312	Open in IMG/M
3300015371\|Ga0132258_12447574	All Organisms → cellular organisms → Bacteria	1307	Open in IMG/M
3300015372\|Ga0132256_100477155	All Organisms → cellular organisms → Bacteria → Acidobacteria	1356	Open in IMG/M
3300015372\|Ga0132256_102410427	All Organisms → cellular organisms → Bacteria	629	Open in IMG/M
3300018429\|Ga0190272_12160970	All Organisms → cellular organisms → Bacteria	595	Open in IMG/M
3300018481\|Ga0190271_10647302	Not Available	1178	Open in IMG/M
3300019356\|Ga0173481_10666317	All Organisms → cellular organisms → Bacteria	557	Open in IMG/M
3300019377\|Ga0190264_10580450	All Organisms → cellular organisms → Bacteria → Acidobacteria	793	Open in IMG/M
3300021432\|Ga0210384_10587994	All Organisms → cellular organisms → Bacteria → Acidobacteria	1000	Open in IMG/M
3300025160\|Ga0209109_10521314	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	536	Open in IMG/M
3300025893\|Ga0207682_10466099	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Iamiaceae → Iamia → unclassified Iamia → Iamia sp. SCSIO 61187	598	Open in IMG/M
3300025917\|Ga0207660_11417668	Not Available	563	Open in IMG/M
3300025920\|Ga0207649_10138903	All Organisms → cellular organisms → Bacteria	1660	Open in IMG/M
3300025925\|Ga0207650_10799936	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Rhodocyclales → Rhodocyclaceae → Niveibacterium → Niveibacterium umoris	799	Open in IMG/M
3300025926\|Ga0207659_10175472	Not Available	1693	Open in IMG/M
3300025930\|Ga0207701_11094945	Not Available	660	Open in IMG/M
3300025935\|Ga0207709_11614906	All Organisms → cellular organisms → Bacteria	539	Open in IMG/M
3300025936\|Ga0207670_11414017	Not Available	591	Open in IMG/M
3300025940\|Ga0207691_10570042	All Organisms → cellular organisms → Bacteria	959	Open in IMG/M
3300025945\|Ga0207679_10066014	All Organisms → cellular organisms → Bacteria	2710	Open in IMG/M
3300026088\|Ga0207641_10709824	All Organisms → cellular organisms → Bacteria	991	Open in IMG/M
3300026089\|Ga0207648_12206321	Not Available	511	Open in IMG/M
3300026118\|Ga0207675_101023241	All Organisms → cellular organisms → Bacteria	845	Open in IMG/M
3300027886\|Ga0209486_10344285	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA3	890	Open in IMG/M
3300027909\|Ga0209382_11772888	All Organisms → cellular organisms → Bacteria	602	Open in IMG/M
3300028587\|Ga0247828_11144804	All Organisms → cellular organisms → Bacteria	517	Open in IMG/M
3300028812\|Ga0247825_10105161	All Organisms → cellular organisms → Bacteria	1912	Open in IMG/M
3300030006\|Ga0299907_11095427	Not Available	579	Open in IMG/M
3300030619\|Ga0268386_10600815	All Organisms → cellular organisms → Bacteria → Acidobacteria	735	Open in IMG/M
3300030619\|Ga0268386_10762478	All Organisms → cellular organisms → Bacteria	623	Open in IMG/M
3300030620\|Ga0302046_10814222	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	751	Open in IMG/M
3300031228\|Ga0299914_11360617	Not Available	560	Open in IMG/M
3300031228\|Ga0299914_11420605	All Organisms → cellular organisms → Bacteria	545	Open in IMG/M
3300031229\|Ga0299913_11723663	All Organisms → cellular organisms → Bacteria	576	Open in IMG/M
3300031366\|Ga0307506_10105699	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA3	930	Open in IMG/M
3300031538\|Ga0310888_10218826	All Organisms → cellular organisms → Bacteria → Acidobacteria	1055	Open in IMG/M
3300031538\|Ga0310888_11041034	All Organisms → cellular organisms → Bacteria	516	Open in IMG/M
3300031562\|Ga0310886_10907556	All Organisms → cellular organisms → Bacteria	560	Open in IMG/M
3300031740\|Ga0307468_100505596	All Organisms → cellular organisms → Bacteria	960	Open in IMG/M
3300031944\|Ga0310884_10999090	Not Available	520	Open in IMG/M
3300032017\|Ga0310899_10017098	All Organisms → cellular organisms → Bacteria → Acidobacteria	2278	Open in IMG/M
3300033417\|Ga0214471_10381296	Not Available	1139	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	55.88%
Host-Associated	Host-Associated	44.12%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	54.90%
Plants	Host-Associated → Plants	44.12%
Aquatic	Environmental → Aquatic	0.98%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	54.90%
Rhizosphere	Host-Associated → Plants → Rhizosphere	31.37%
Rhizoplane	Host-Associated → Plants → Rhizoplane	11.76%
Freshwater	Environmental → Aquatic → Freshwater	0.98%
Roots	Host-Associated → Plants → Roots	0.98%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	39.22%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	22.55%
Loam	Environmental → Terrestrial → Soil → Loam	14.71%
Soil	Host-Associated → Plants → Rhizosphere → Soil	8.82%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	7.84%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	3.92%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.98%
Sand	Environmental → Terrestrial → Soil → Sand	0.98%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.98%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	22.55%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	17.65%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	10.78%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	8.82%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	7.84%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	6.86%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	4.90%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	3.92%
Uranium Contaminated	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated	3.92%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	3.92%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	1.96%
Unclassified	Environmental → Terrestrial → Soil → Loam → Unclassified	1.96%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	0.98%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.98%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	0.98%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	0.98%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.98%

Habitat	Taxonomy	Distribution
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	17.65%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	15.69%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	6.86%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	5.88%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	4.90%
Soil	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil	3.92%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	2.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	2.94%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	2.94%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	1.96%
Soil	Environmental → Terrestrial → Soil → Loam → Unclassified → Soil	1.96%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.96%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	1.96%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.96%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.96%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	1.96%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	1.96%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	1.96%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Groundwater	0.98%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.98%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.98%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Corn, Switchgrass And Miscanthus Rhizosphere	0.98%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.98%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.98%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.98%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.98%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.98%
Groundwater Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand	0.98%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Switchgrass Rhizosphere	0.98%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere	0.98%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.98%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.98%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.98%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2228664021	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000178	Pristine groundwater from Oak Ridge Integrated Field Research Center, Tennessee (resequenced)	Environmental	Open in IMG/M
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000559	Amended soil microbial communities from Kansas Great Prairies, USA - control no BrdU total DNA F1.4 TC clc assemly	Environmental	Open in IMG/M
3300000891	Soil microbial communities from Great Prairies - Wisconsin, Continuous corn soil	Environmental	Open in IMG/M
3300002122	Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 10_2	Environmental	Open in IMG/M
3300002124	Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 10_3	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300004643	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005288	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 2: eDNA_1	Host-Associated	Open in IMG/M
3300005289	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2	Host-Associated	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005341	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG	Environmental	Open in IMG/M
3300005343	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG	Environmental	Open in IMG/M
3300005353	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG	Host-Associated	Open in IMG/M
3300005365	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG	Environmental	Open in IMG/M
3300005444	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005544	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG	Environmental	Open in IMG/M
3300005617	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2	Host-Associated	Open in IMG/M
3300005718	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2	Host-Associated	Open in IMG/M
3300005719	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2	Host-Associated	Open in IMG/M
3300005843	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2	Host-Associated	Open in IMG/M
3300006058	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1	Host-Associated	Open in IMG/M
3300006196	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1	Host-Associated	Open in IMG/M
3300006237	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2)	Host-Associated	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006880	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3	Host-Associated	Open in IMG/M
3300007004	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost	Environmental	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009148	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009177	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG	Host-Associated	Open in IMG/M
3300009806	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S1_50_60	Environmental	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300012892	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S209-509C-1	Environmental	Open in IMG/M
3300012905	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S013-104B-2	Environmental	Open in IMG/M
3300012906	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S212-509R-1	Environmental	Open in IMG/M
3300012911	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S088-202R-2	Environmental	Open in IMG/M
3300012951	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MG	Environmental	Open in IMG/M
3300014969	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG	Host-Associated	Open in IMG/M
3300015077	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S178-409R-2 (version 2)	Environmental	Open in IMG/M
3300015200	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S209-509C-1 (version 2)	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300018429	Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 T	Environmental	Open in IMG/M
3300018481	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 356 T	Environmental	Open in IMG/M
3300019356	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S073-202C-2 (version 2)	Environmental	Open in IMG/M
3300019377	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 112 T	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300025160	Soil microbial communities from Rifle, Colorado, USA - sediment 10ft 2	Environmental	Open in IMG/M
3300025893	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025917	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025920	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025925	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025926	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025930	Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)	Environmental	Open in IMG/M
3300025935	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025936	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes)	Environmental	Open in IMG/M
3300025940	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025945	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026088	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026089	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026118	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027886	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost (SPAdes)	Environmental	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300028587	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day3	Environmental	Open in IMG/M
3300028812	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Vanillin_Day48	Environmental	Open in IMG/M
3300030006	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT152D67	Environmental	Open in IMG/M
3300030619	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT150D86 (Novaseq)	Environmental	Open in IMG/M
3300030620	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT147D111	Environmental	Open in IMG/M
3300031228	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT153D57	Environmental	Open in IMG/M
3300031229	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT155D38	Environmental	Open in IMG/M
3300031366	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 25_S	Environmental	Open in IMG/M
3300031538	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D1	Environmental	Open in IMG/M
3300031562	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D3	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031944	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D1	Environmental	Open in IMG/M
3300032017	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D4	Environmental	Open in IMG/M
3300033417	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT142D155	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
ICCgaii200_07783302	2228664021	Soil	MGLMRWFRRRPTDDDMREELEVHVAMRAEHDGVHESVARRRLGNTLQTREAMRRVWIGQW
FW301_10105211	3300000178	Groundwater	MGVKGGWFRRRPSDEEMREELEAHLAMRAEHDGVDDAAARRRLGNLLHTRESMRRVWIAEWWDAL
INPhiseqgaiiFebDRAFT_1046392531	3300000364	Soil	MGLKGWFRRRPSDDEMREELEAHVAMRAXXDRXXEXAARRRXGNXLXTREXMRRVXXXXWWDAMRQDAHYT
F14TC_1010302231	3300000559	Soil	MGMKGWFRRRPSDDEMREELETHLAMRAEYDRVDEATARRRLGNLLHTRESMRR
JGI10214J12806_124522331	3300000891	Soil	MSFKSGWFRRRPSDEEMREEIEAHIAMRAEHDGIETTAARRRLGNTLQTREAMRRVWIAQWWDALRQDAW
C687J26623_101778472	3300002122	Soil	MGMKGRWFRRRPSDEEMREELEAHVAMRAEHDAIGTAAARRRLGNTLRTRETMRRVWVAEWWDALQQDAWFT
C687J26631_103260391	3300002124	Soil	MGMKGRWFRRRPSDEEMREELEAHVAMRAEHDAIGTAAARRRLGNTLRTRETM
Ga0063356_1008859371	3300004463	Arabidopsis Thaliana Rhizosphere	MGLKRWFRRRPSDDEMREEIETHLAMRAEHDRVDEAAARRRLGNLLRTRESMR
Ga0062591_1023961031	3300004643	Soil	MGVTGGWFRRRPSDDEMREELEAHVAMRAEHDRVDEAAARRRLGNLLHTRES
Ga0062594_1014411551	3300005093	Soil	MGLRRWFRRSPSDDELREELEAHLAMRAEYDGVDAFAARRRLGNVLRTRESMRRVW
Ga0062594_1026706882	3300005093	Soil	MGVKGGWFRRRPSDDEMREELEAHVAMRAEHDRVDEAAARRRLGNLLHTRESMRRVWIAEWWDALRQDAHFTWRSWRRRP
Ga0065714_101452901	3300005288	Miscanthus Rhizosphere	MNIKGWFRRGPSDEEMREELESHLAMRAEHDGVDHAAARRRLGNVLHTREAMRRVWIA
Ga0065704_107294702	3300005289	Switchgrass Rhizosphere	MGMKGNWFRRRPSDEEMREELETHVAMRAEHDRVDEAAARRRLGNILHTRESMRRVWIAAWWDAL
Ga0066388_1064618921	3300005332	Tropical Forest Soil	MGMNSRWFRKRPSDDEMREEIEAHIAMRAEHDGVDESVARRRLGNVLRTRESMRRVWI
Ga0070691_107061832	3300005341	Corn, Switchgrass And Miscanthus Rhizosphere	MGMKGGWFRRRPSDDEMREELEAHVAMRAEHDRVDEAAARRRLGNLLHTRESMRRVWIAEWWDALRQDAHYTWRSW
Ga0070687_1009182991	3300005343	Switchgrass Rhizosphere	MSMKIHWFRRRPSDDEMREELEAHVAMRAEHDHMDEAAARRRLGNLLRTRESMRRVWIAQWWDALRQDVWF
Ga0070669_1013737611	3300005353	Switchgrass Rhizosphere	MGLTRWFRRGPSDEEMREELEAHLAMRAEHDGVGHAAARRRLGNVRQTREAMRRVWVAEWWDTL
Ga0070688_1003906491	3300005365	Switchgrass Rhizosphere	MNIKGWFRRGPSDEEMREELESHLAMRAEHDGVDHAAARRRLGNVLHTREAMRRVW
Ga0070688_1008539771	3300005365	Switchgrass Rhizosphere	MGLRRWFRRRPSDEELREELDAHVAMRAEHDDVDASAARRRVGNLLRTREAMRRV
Ga0070694_1013627351	3300005444	Corn, Switchgrass And Miscanthus Rhizosphere	MGLTRWFRRGPSDEEMREELEAHLAMRAEHDGVGHAAARRRLGNVLQTREAMRRVWVAEWWDTLRQDAHDTWRSWRR
Ga0070708_1021895031	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MGMKGRWFRRRPSDDEMREELEAHVAMRAEHDRMDEAAARRRLGNLLRTRESMRRVWIAEWWDTVRQDA
Ga0070707_1022471441	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	MGMKGRWFRRRPSDDEMREELEAHVAMRAEHDGVDEAAARRRLGNILHTRESMRRVWIAQWCDALRQDAHYTW
Ga0070686_1008372223	3300005544	Switchgrass Rhizosphere	MGLKRWFRKRPSSGEVREELEAHMAMRAGHDGLDALAARKRLGNVMRTEEEMRRVWIAEFWDALAQDASFTWRS
Ga0070686_1015694321	3300005544	Switchgrass Rhizosphere	MGVKHWFSRRPSDDEMREELESHLAMRAEHDGVDEAAARRRLGNLLKTRESMRRVWI
Ga0068859_1025354051	3300005617	Switchgrass Rhizosphere	MGLKHWFRRRPSSDEMREELETHMALRAGHDGIEESGARRRLGNVLRTQEEMRRVWIAEVWDALAQDASFTWRSWNRN
Ga0068866_105850821	3300005718	Miscanthus Rhizosphere	MSIKGGWFRRGPSDEEMREELEAHVAMRAEHDRVNESAARRRLGNVLQTREAMRRVWIAEWVDALRQDAHY
Ga0068861_1019658432	3300005719	Switchgrass Rhizosphere	MGMKYGWFRRRPSDDEMREELETHLAMRAEHDRGDEAAARRRLGNLLRTRESMRRVWIAGWWDALRQDAHFTWRSWR
Ga0068860_1012605703	3300005843	Switchgrass Rhizosphere	MGLKVRWFRRRPSDDEMREELEAHVAMRAEHDRVDEAAARRRLGNLLHTRESMRRVWIAEWWDALRQ
Ga0075432_101913961	3300006058	Populus Rhizosphere	MGVMRRWFRRRPTDDEMREELEAHVAMRAEHDRIDEAAARRRLGNLLHTRESMRRVWI
Ga0075422_101524001	3300006196	Populus Rhizosphere	MGVKNWFRRGPRVGEMREELETHLAMRAEYDDSDTNAARRRLGNMLHTQEEMRHVWLPA
Ga0097621_1008263781	3300006237	Miscanthus Rhizosphere	MGVTRWFRRRRPSDDEMREELEAHVAMRAEHDGVDEAAARRRVGNLLRTRE
Ga0075428_1002019121	3300006844	Populus Rhizosphere	MGMKRGWFRRRPSDDEMREELEAHVAMRAEHDGVDEAAARRRLGNVLHTRE
Ga0075428_1024585181	3300006844	Populus Rhizosphere	MGLTRWFRRGPSDEEMREELEAHLAMRAEHDGVGHAAARRRLGNVLQTREAMRRVWVAEWWD
Ga0075421_1015353743	3300006845	Populus Rhizosphere	MDMKGRWFRRRPSDDEMREELEAHVAMRAEHDGVDEAAARRRLGNVLHTRESMRRVWI
Ga0075433_116420251	3300006852	Populus Rhizosphere	MGMIDRWFRKRPSDDEMHEELEAHVAMRAEHDGVDEAAARRRLGNVLHTREEMRRVWIARWLDALRQDAHYTWRS
Ga0075425_1012606012	3300006854	Populus Rhizosphere	MGMKRSWFRRRPSDDEMREELEAHVAMRAEHDRVDDAAARRRLGNLLHTRESMRRVWIAEWWDALRQDAH
Ga0075429_1005755383	3300006880	Populus Rhizosphere	MGLTRWFRFRRRPSDDEMREELEAHVAMRAEHDGVDDRAARRRLGNTLQMRESMRRVWIAEWWDALRQD
Ga0075429_1006602621	3300006880	Populus Rhizosphere	MGMIDRWFRRRPSDDDMREELEAHVAMRAEHDGVDARAARRRLGNVLQTREAMRR
Ga0079218_116684511	3300007004	Agricultural Soil	MGMKGNWFRRRPSDDEMREELEAHVAMRAAHDRVDEAAARRRLGNVLHTRDSMRRVLDLST*
Ga0075435_1017263241	3300007076	Populus Rhizosphere	MGLTRWFRRGPSDEEMREELEAHLAMRAEHDGVGHAAARRRLGNVLQTREAMRRVWVAEWWDTLRQDAHDTW
Ga0075418_109442001	3300009100	Populus Rhizosphere	MGVKNWFRRGPRVGEMREELETHLAMRAEYDDSDTNAARRRLGNMLHTQEQMRRVWLPAFWDA
Ga0075418_129066672	3300009100	Populus Rhizosphere	MGMIDRWFRRRPTDDDMREELEAHVAMRAEHDGVNEAAARRRLGNVLQTR
Ga0105243_107309112	3300009148	Miscanthus Rhizosphere	MKIHWFRRRPSDDEMREELEAHVAMRAEHDRVDEAAARRRLGNLLQTRESMRRVWIAEWW
Ga0111538_108409962	3300009156	Populus Rhizosphere	MGLRRWFRRRPSDEELREELDAHVAMRAEHDDVDASAARRRVGNLLRTREAMRRVWIAEWWDTVRQDAGFTLRSSH*
Ga0111538_114988662	3300009156	Populus Rhizosphere	MGMNDRWFRRRPSDDEMREELEAHVAMRAEHDGVDEAAARRRLGNVLQTRESMRRVWIALWWEAL
Ga0111538_116881741	3300009156	Populus Rhizosphere	MGLTRWFRRRPTDDDMRDELEAHVAMRAEHDGVDHAAARRRLGNMLRTREAMRRVWIAEWWDALRQDAH
Ga0111538_128889062	3300009156	Populus Rhizosphere	MGLKRWFRRRPSDDEMREEIETHLAMRAEHDRVDEAAARRRLGNLLRTRESMRRVWIAGWWDALRQDTHFTWRSWRR
Ga0075423_121642502	3300009162	Populus Rhizosphere	MGVMRRWFRRRPTDDEMREELEAHVAMRAEHDRIDEAAARRRLGNLLHTRESMRRVW
Ga0105248_109166331	3300009177	Switchgrass Rhizosphere	MGLKRWFRRRPSDDEMREELATHLAMRAEHDRVDEATARRRLGNLLRTRESMRRVWIAGWWDALR
Ga0105248_130045611	3300009177	Switchgrass Rhizosphere	MGVKGGWFRRRPSDDEMREELEAHVAMRAEHDRVDESAARRRLGNLLHTRESMRRVWIAE
Ga0105081_10915971	3300009806	Groundwater Sand	MGVKGRWFRRRPSDDEMREELEAHVAMRAEHDGVNETVARRRLGNMLQTRERMRRVWIAE
Ga0134124_127302762	3300010397	Terrestrial Soil	MGLRGWFRKRPSSDELREELEAHVALRAGHDGVDQSAARKRLGNVLLTQEEIRQVWIAEFWDTLAQDASFTWRSWNRNR
Ga0157294_101158623	3300012892	Soil	MGLRRWFRRRPSDEELREELDAHVAMRAEHDDVDASAARRRVGNLLRTREAM
Ga0157296_100658363	3300012905	Soil	MGMKGKWFRRRPSDDEMREELEAHVAMRAEHDHVDEAAARRRLGNILHTRESMRRVWIAEWWDALRQ
Ga0157295_103300391	3300012906	Soil	MGMKGKWFRRRPSDDEMREELEAHVAMRAEHDHVDEAAARRRLGNILHTRESMRRVWIGEWWDALRQDAH
Ga0157301_103748061	3300012911	Soil	MGLTRWFRRGPSDEDIREELEAHVAMRAEHDGMGEAAARRRLGNVLHTREAMRRV
Ga0164300_111226821	3300012951	Soil	MGLTRWFRRRPSDDEMREELEAHIAMRAEHDGVHESVARRRLGNVLLTREAMRRV
Ga0157376_118016943	3300014969	Miscanthus Rhizosphere	MGLKRWFRKRPSSGELREELEAHIALRAGHDGIDESAARKRLGNVLRTQEEIRRVWIAEFWDTLA
Ga0173483_105365372	3300015077	Soil	MGLTRWFRRGPSDEDIREELEAHVAMRAEHDGMGEAAARRRLGNVLHTREAMRRVWI
Ga0173480_101284304	3300015200	Soil	MGLRRWFRRRPSDEELREELDAHVAMRAEHDDVDASAARRRVGNLLRTREAMRRVWIAEWWDTVRQDAGFTLRS
Ga0132258_124309052	3300015371	Arabidopsis Rhizosphere	MNGRWFRRRPSDEELREELEAHVAMRAQHDGVDEAAARRPLGDLLHTRESMRRVWIAEWLEALAQDAHFTWRSWRRQPGF
Ga0132258_124475741	3300015371	Arabidopsis Rhizosphere	MGLTRWLRQRPSDDDMREELEAHVAMRAEHDGVDDAAAKRRLGNALRPREAMRRVWIADWWEAL
Ga0132256_1004771554	3300015372	Arabidopsis Rhizosphere	MGMKRGWFRRRPSDDEMREELEAHVAMRAEHDGVDEAAARRRLGNVLHTRESMRRVWIA
Ga0132256_1024104271	3300015372	Arabidopsis Rhizosphere	MGMTSWFRRRPSDEEMREELEAHVAMRAEHDGLDEAAAQRRLGNLLRTRESMRRVWIALWWEALRQDAHYTWRSWR
Ga0190272_121609702	3300018429	Soil	MGVKGGWFRGRPSDEEMREELEAHVAMRAEHDHVDEGAARRRLGNLLHTR
Ga0190271_106473021	3300018481	Soil	MGMKGNWFRRRPSDDEMREELEAHVAMRAEHDGVDEAAARRRLGNMLRTRESMRRVWIVQWLDALRQDAHFTWRSWR
Ga0173481_106663172	3300019356	Soil	MGMKGKWFRRRPSDDEMREELEAHVAMRAEHDHVDEAAARRRLGNILHTRESMRRVWIGEWWDALRQ
Ga0190264_105804503	3300019377	Soil	MGLTRWFRRRPSDDEMREELEAHVAMRAAHDGVDEVVAQRRLGNVLQTREAVRRVWS
Ga0210384_105879942	3300021432	Soil	MDLKNWFRKHPSGDDMREEIESHLAMRAEHDNTDPSAARRRLGNALYTQEEVRHVWIAPFWDTLLQDARFTWRSWSAIRDSR
Ga0209109_105213141	3300025160	Soil	MKGNWFRRRPSDDEMREELEGHVAMRAEHDGVDEAAARRRLGNLLQTREAVRRVWIARWWDELRQ
Ga0207682_104660991	3300025893	Miscanthus Rhizosphere	MGLRRWFRRRPSDEELREELDAHVAMRAEHDDVDASAARRRVGNLLRTREAMRRVWIAEWWDTVRQDAGFTLRSWR
Ga0207660_114176681	3300025917	Corn Rhizosphere	MGLTRWFRRRPSDDEMREELEAHVAMRAEHDGVEESVARRRLGNVLHTRESMRRVWIAAWWDALRQDAHYTWRSWRR
Ga0207649_101389034	3300025920	Corn Rhizosphere	MGLRRWFRRRPSDEELREELDAHVAMRAEHDDVDASAARRRVGNLLRTREAMRRVWIAE
Ga0207650_107999362	3300025925	Switchgrass Rhizosphere	MGLRRWFRRGPSDDELREELEAHLAMRAEYDGVDAFAARRRLGNVLRTRES
Ga0207659_101754721	3300025926	Miscanthus Rhizosphere	MGLRRWFRRRPSDEELREELDAHVAMRAEHDDVDASAARRRVGNLLRTREAMRRVWIAEWWDT
Ga0207701_110949451	3300025930	Corn, Switchgrass And Miscanthus Rhizosphere	MNIKGWFRRGPSDEEMREELESHLAMRAEHDGVDHAAARRRLGNVLHTREAMR
Ga0207709_116149061	3300025935	Miscanthus Rhizosphere	MGVKGGWFRRRPSDDEMREELEAHVAMRAEHDRVDEAAARRRLGNLLHTR
Ga0207670_114140171	3300025936	Switchgrass Rhizosphere	MGLRRWFRRRPSDEELREELDAHVAMRAEHDDVDASAARRRVGNLLRTREAMRRVWIAEW
Ga0207691_105700423	3300025940	Miscanthus Rhizosphere	MGTSWFRRRPSDEELREELDAHVAMRAEHDDADASAARRRVGNLLRTREAMRR
Ga0207679_100660144	3300025945	Corn Rhizosphere	MGLRRWFRRRPSDEELREELDAHVAMRAEHDDVDASAARRRVGNLLRTREAMRRVWIAEWWDTVRQDAWFTRRSSH
Ga0207641_107098242	3300026088	Switchgrass Rhizosphere	MGIKGNWFRRRPSDDEMREELEAHVAMRAEHDRVDEAAARRRLGNLLHTRESMRRVWIAEWWDTVRQDAWFTRRSSH
Ga0207648_122063211	3300026089	Miscanthus Rhizosphere	MSMKIHWFRRRPSDDEMREELEAHVAMRAEHDGMDQAAARRRLGNMLRTRE
Ga0207675_1010232411	3300026118	Switchgrass Rhizosphere	MGVKGGWFRRRPSDDEMREELEAHVAMRAEHDRVGEAAARRRLGNLLHTRESMRRVWIAEWWDALRQDARFTVRSWQRQ
Ga0209486_103442851	3300027886	Agricultural Soil	MNTKRRWFRRRPSDDEMREELESHVAMRAEHDGIDEAVARRRLGNILRTRESMRRVWIAEWWDALRQDAHFTVRSWQRQP
Ga0209382_117728881	3300027909	Populus Rhizosphere	MDMKGRWFRRRPSDDEMREELEAHVAMRAEHDRVDESVARRRLGNVLHTRESMRRV
Ga0247828_111448041	3300028587	Soil	MGMKGRWFRRGPSDDEMREELEAHVAMRADHDGVDETVARRRLGNVLHTREQMRRVWIAQGW
Ga0247825_101051611	3300028812	Soil	MGMKGRWFRGRPSDDEMREELEAHVAMRAEHDRVDEAAARRRLGNILHTRESMRRVWIAEWW
Ga0299907_110954272	3300030006	Soil	MGITNGWFRRRPSDAEMHEELESHVAMRAEHDGIDDAVARRRLGNTLQTREAMRRIWIAQWWDALRQDAW
Ga0268386_106008152	3300030619	Soil	MGVKSGWFRRRPSDDEMREELEAHVAMRAEHDRVDEAAARRRLGNLLHTRESMRRVWIAE
Ga0268386_107624781	3300030619	Soil	MGVKGSWFRRRPSDDEMREELEAHVAMCAEHDRVDEAAARRRLGNMLQTREAMRRVWIAE
Ga0302046_108142221	3300030620	Soil	MSLKRWLRGRPSDDELREELESHVAMRAAHDGMDEAAARRRLGNTLHTREAMRRVWIAEWWDALRQDARFTARSWRRQP
Ga0299914_113606171	3300031228	Soil	MGMKGNWFRRRPSDDEMREELEAHVAMRAEHDRVDESAARRRLGNLLHTRES
Ga0299914_114206052	3300031228	Soil	MGVKSGWFRRRPSDDEMREELEAHVAMRAEHDRADEATARRRVGNLLQTRESMRRVWIAEWWDAL
Ga0299913_117236632	3300031229	Soil	MGTKGGWFRRRPSDDEMREELDSHVVMRAEHDRVDESAARRRVGNLLQTRESMRRVWIAEWWEALVQD
Ga0307506_101056991	3300031366	Soil	MRMTRWFQRRPSDEEMREELEAHVAMRAEHDGVDEAAARRRRGNLLRTRWS
Ga0310888_102188263	3300031538	Soil	MGMKGRWFRRRPSDEEMREELEAHVAMRAEHDAVNEAAARRRLGNVLQTREAMRRVWIAAWWDALLQDAHYTWRSW
Ga0310888_110410342	3300031538	Soil	MGLTRWFRRRPSDEEMREELEAHVAMRAEHDGVAATAARRRLGNTLQTREAMRRVWIAQWWDALRQDAWFTGRS
Ga0310886_109075562	3300031562	Soil	MGMKINWRRRRPSDDEMREELEAHVAMRAEHDGVDEAAARRRLGNMLRTRESMRRVWIAAWLDALRQDAHYTWRSWRR
Ga0307468_1005055961	3300031740	Hardwood Forest Soil	MGLTRWFRRRPSDEEMREELEAHIAMRAEHDGVAATAARRRLGNTLQTREAMRRVWIAQW
Ga0310884_109990902	3300031944	Soil	MNIKGWFRRGPSDEEMREELESHLAMRAEHDGVDHAAARRRLGNVLHTREAMRRVWIAEW
Ga0310899_100170983	3300032017	Soil	MGLTRWFRRGPSDEEMREELEAHLAMRAEHDGVGHAAARRRLGNVLQTREAMRRVWVAEWWDTLRQ
Ga0214471_103812962	3300033417	Soil	MRMKGGWFRRRPSDDEMREELEAHVAMRAEHDRVDEAAARRRLGNLLHTRESMRRVWIAEWWDALRQDAHFTVRSWR

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F101462

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences