Metagenome Family F101388

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F101388
Family Type	Metagenome
Number of Sequences	102
Average Sequence Length	84 residues
Representative Sequence	VPKHSAKVVCYEGSVWISPRQFWGLVRDNIIEYVSEPPLTGKFKGQPADFLVTVNHTVLSLACPEHRQSVLHSKRYTKR
Number of Associated Samples	86
Number of Associated Scaffolds	102

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	29.41 %
% of genes near scaffold ends (potentially truncated)	43.14 %
% of genes from short scaffolds (< 2000 bps)	75.49 %
Associated GOLD sequencing projects	77
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (99.020 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere (11.765 % of family members)
Environment Ontology (ENVO)	Unclassified (44.118 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (70.588 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 55.70% β-sheet: 11.39% Coil/Unstructured: 32.91%
Feature Viewer

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Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 102 Family Scaffolds
PF07729	FCD	31.37
PF00392	GntR	21.57
PF02894	GFO_IDH_MocA_C	7.84
PF00005	ABC_tran	5.88
PF00596	Aldolase_II	3.92
PF04616	Glyco_hydro_43	2.94
PF07470	Glyco_hydro_88	1.96
PF02782	FGGY_C	0.98
PF03544	TonB_C	0.98
PF03713	DUF305	0.98
PF02424	ApbE	0.98
PF07681	DoxX	0.98

COG ID	Name	Functional Category	% Frequency in 102 Family Scaffolds
COG1802	DNA-binding transcriptional regulator, GntR family	Transcription [K]	31.37
COG2186	DNA-binding transcriptional regulator, FadR family	Transcription [K]	31.37
COG0673	Predicted dehydrogenase	General function prediction only [R]	7.84
COG0810	Periplasmic protein TonB, links inner and outer membranes	Cell wall/membrane/envelope biogenesis [M]	0.98
COG1477	FAD:protein FMN transferase ApbE	Posttranslational modification, protein turnover, chaperones [O]	0.98
COG2259	Uncharacterized membrane protein YphA, DoxX/SURF4 family	Function unknown [S]	0.98
COG3544	Uncharacterized conserved protein, DUF305 family	Function unknown [S]	0.98
COG4270	Uncharacterized membrane protein	Function unknown [S]	0.98

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	99.02 %
Unclassified	root	N/A	0.98 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	99.02 %
Unclassified	root	N/A	0.98 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	99.02 %
Unclassified	root	N/A	0.98 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	75.49 %
Unclassified	root	N/A	0.98 %

Name	Rank	Taxonomy	Distribution
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	50.00 %
Blastocatellia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia	5.88 %
Unclassified	root	N/A	0.98 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	50.00 %
Blastocatellales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales	5.88 %
Unclassified	root	N/A	0.98 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	50.00 %
Pyrinomonadaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae	5.88 %
Unclassified	root	N/A	0.98 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	50.00 %
Pyrinomonas	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → Pyrinomonas	5.88 %
Unclassified	root	N/A	0.98 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	50.00 %
Pyrinomonas methylaliphatogenes	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → Pyrinomonas → Pyrinomonas methylaliphatogenes	5.88 %
Unclassified	root	N/A	0.98 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2162886013\|SwBSRL2_contig_3423588	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1274	Open in IMG/M
2162886013\|SwBSRL2_contig_691460	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1226	Open in IMG/M
3300000559\|F14TC_100182779	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	598	Open in IMG/M
3300000789\|JGI1027J11758_12780777	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	567	Open in IMG/M
3300000789\|JGI1027J11758_12880296	All Organisms → cellular organisms → Bacteria	1402	Open in IMG/M
3300000953\|JGI11615J12901_10052410	All Organisms → cellular organisms → Bacteria	4290	Open in IMG/M
3300004013\|Ga0055465_10072301	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	978	Open in IMG/M
3300004157\|Ga0062590_100521555	All Organisms → cellular organisms → Bacteria → Acidobacteria	1019	Open in IMG/M
3300005289\|Ga0065704_10444889	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	710	Open in IMG/M
3300005290\|Ga0065712_10184603	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1175	Open in IMG/M
3300005293\|Ga0065715_10034964	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	961	Open in IMG/M
3300005328\|Ga0070676_11219507	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	572	Open in IMG/M
3300005330\|Ga0070690_100166068	All Organisms → cellular organisms → Bacteria	1516	Open in IMG/M
3300005332\|Ga0066388_100301163	All Organisms → cellular organisms → Bacteria	2248	Open in IMG/M
3300005332\|Ga0066388_104163540	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	737	Open in IMG/M
3300005333\|Ga0070677_10596506	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	611	Open in IMG/M
3300005334\|Ga0068869_100074504	All Organisms → cellular organisms → Bacteria	2519	Open in IMG/M
3300005334\|Ga0068869_100149058	All Organisms → cellular organisms → Bacteria → Acidobacteria	1813	Open in IMG/M
3300005334\|Ga0068869_100343810	All Organisms → cellular organisms → Bacteria → Acidobacteria	1215	Open in IMG/M
3300005337\|Ga0070682_100697805	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	813	Open in IMG/M
3300005338\|Ga0068868_100174350	All Organisms → cellular organisms → Bacteria	1781	Open in IMG/M
3300005345\|Ga0070692_10533462	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	766	Open in IMG/M
3300005354\|Ga0070675_101523921	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	617	Open in IMG/M
3300005355\|Ga0070671_100160731	All Organisms → cellular organisms → Bacteria → Acidobacteria	1899	Open in IMG/M
3300005355\|Ga0070671_100897948	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	774	Open in IMG/M
3300005356\|Ga0070674_100406331	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1114	Open in IMG/M
3300005364\|Ga0070673_100276836	All Organisms → cellular organisms → Bacteria	1470	Open in IMG/M
3300005406\|Ga0070703_10000142	All Organisms → cellular organisms → Bacteria	37070	Open in IMG/M
3300005438\|Ga0070701_10732618	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	668	Open in IMG/M
3300005440\|Ga0070705_100046510	All Organisms → cellular organisms → Bacteria	2502	Open in IMG/M
3300005440\|Ga0070705_100088097	All Organisms → cellular organisms → Bacteria	1926	Open in IMG/M
3300005441\|Ga0070700_101820735	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	525	Open in IMG/M
3300005444\|Ga0070694_100074519	All Organisms → cellular organisms → Bacteria	2346	Open in IMG/M
3300005468\|Ga0070707_100004141	All Organisms → cellular organisms → Bacteria	13596	Open in IMG/M
3300005549\|Ga0070704_100011957	All Organisms → cellular organisms → Bacteria	5348	Open in IMG/M
3300005564\|Ga0070664_101860450	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	571	Open in IMG/M
3300005616\|Ga0068852_101542845	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	686	Open in IMG/M
3300005617\|Ga0068859_102672683	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	549	Open in IMG/M
3300005713\|Ga0066905_102101680	Not Available	525	Open in IMG/M
3300006237\|Ga0097621_100538468	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1062	Open in IMG/M
3300006871\|Ga0075434_100065854	All Organisms → cellular organisms → Bacteria	3609	Open in IMG/M
3300006871\|Ga0075434_102466837	All Organisms → cellular organisms → Bacteria → Acidobacteria	521	Open in IMG/M
3300006904\|Ga0075424_100261272	All Organisms → cellular organisms → Bacteria	1841	Open in IMG/M
3300006904\|Ga0075424_102126432	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	591	Open in IMG/M
3300009098\|Ga0105245_11981328	All Organisms → cellular organisms → Bacteria → Acidobacteria	636	Open in IMG/M
3300009100\|Ga0075418_10367199	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → Pyrinomonas → Pyrinomonas methylaliphatogenes	1537	Open in IMG/M
3300009148\|Ga0105243_10737073	All Organisms → cellular organisms → Bacteria	965	Open in IMG/M
3300009162\|Ga0075423_10957315	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	909	Open in IMG/M
3300009177\|Ga0105248_10100531	All Organisms → cellular organisms → Bacteria	3259	Open in IMG/M
3300009551\|Ga0105238_12072087	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	603	Open in IMG/M
3300009553\|Ga0105249_10146006	All Organisms → cellular organisms → Bacteria → Acidobacteria	2273	Open in IMG/M
3300010037\|Ga0126304_10036184	All Organisms → cellular organisms → Bacteria	2934	Open in IMG/M
3300010046\|Ga0126384_10096800	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2166	Open in IMG/M
3300010359\|Ga0126376_10022329	All Organisms → cellular organisms → Bacteria	4158	Open in IMG/M
3300010373\|Ga0134128_10356258	All Organisms → cellular organisms → Bacteria → Acidobacteria	1635	Open in IMG/M
3300010373\|Ga0134128_12885001	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	529	Open in IMG/M
3300010397\|Ga0134124_10169619	All Organisms → cellular organisms → Bacteria → Acidobacteria	1960	Open in IMG/M
3300010397\|Ga0134124_11693091	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	664	Open in IMG/M
3300010399\|Ga0134127_11745360	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	698	Open in IMG/M
3300010400\|Ga0134122_12215569	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	593	Open in IMG/M
3300010401\|Ga0134121_10500520	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1119	Open in IMG/M
3300010403\|Ga0134123_10011225	All Organisms → cellular organisms → Bacteria	6118	Open in IMG/M
3300011119\|Ga0105246_10520747	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1013	Open in IMG/M
3300012910\|Ga0157308_10374366	All Organisms → cellular organisms → Bacteria → Acidobacteria	545	Open in IMG/M
3300012955\|Ga0164298_11319877	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	554	Open in IMG/M
3300013100\|Ga0157373_11002460	All Organisms → cellular organisms → Bacteria → Acidobacteria	623	Open in IMG/M
3300014326\|Ga0157380_13293723	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	516	Open in IMG/M
3300014969\|Ga0157376_10086955	All Organisms → cellular organisms → Bacteria → Acidobacteria	2696	Open in IMG/M
3300014969\|Ga0157376_11478733	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	712	Open in IMG/M
3300015371\|Ga0132258_10761446	All Organisms → cellular organisms → Bacteria → Acidobacteria	2439	Open in IMG/M
3300015371\|Ga0132258_11701778	All Organisms → cellular organisms → Bacteria	1591	Open in IMG/M
3300015372\|Ga0132256_102853601	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	581	Open in IMG/M
3300015373\|Ga0132257_101317270	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	917	Open in IMG/M
3300018469\|Ga0190270_10796390	All Organisms → cellular organisms → Bacteria → Acidobacteria	951	Open in IMG/M
3300018482\|Ga0066669_10781439	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	844	Open in IMG/M
3300025315\|Ga0207697_10048414	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1753	Open in IMG/M
3300025885\|Ga0207653_10000247	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → Pyrinomonas → Pyrinomonas methylaliphatogenes	35017	Open in IMG/M
3300025893\|Ga0207682_10225223	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	868	Open in IMG/M
3300025899\|Ga0207642_10386078	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	835	Open in IMG/M
3300025908\|Ga0207643_10056245	All Organisms → cellular organisms → Bacteria	2237	Open in IMG/M
3300025918\|Ga0207662_10629320	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	748	Open in IMG/M
3300025922\|Ga0207646_10017708	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → Pyrinomonas → Pyrinomonas methylaliphatogenes	6658	Open in IMG/M
3300025923\|Ga0207681_10635520	All Organisms → cellular organisms → Bacteria → Acidobacteria	884	Open in IMG/M
3300025926\|Ga0207659_10872451	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	774	Open in IMG/M
3300025930\|Ga0207701_10033489	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → Pyrinomonas → Pyrinomonas methylaliphatogenes	4830	Open in IMG/M
3300025930\|Ga0207701_10062040	All Organisms → cellular organisms → Bacteria → Acidobacteria	3410	Open in IMG/M
3300025931\|Ga0207644_10139655	All Organisms → cellular organisms → Bacteria → Acidobacteria	1864	Open in IMG/M
3300025931\|Ga0207644_10883068	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	749	Open in IMG/M
3300025934\|Ga0207686_10283922	All Organisms → cellular organisms → Bacteria → Acidobacteria	1223	Open in IMG/M
3300025936\|Ga0207670_10346471	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1175	Open in IMG/M
3300025941\|Ga0207711_10131823	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → Pyrinomonas → Pyrinomonas methylaliphatogenes	2242	Open in IMG/M
3300025942\|Ga0207689_10457102	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1067	Open in IMG/M
3300025961\|Ga0207712_10136947	All Organisms → cellular organisms → Bacteria → Acidobacteria	1874	Open in IMG/M
3300026075\|Ga0207708_10017049	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → Pyrinomonas → Pyrinomonas methylaliphatogenes	5467	Open in IMG/M
3300026088\|Ga0207641_10238696	All Organisms → cellular organisms → Bacteria	1693	Open in IMG/M
3300031716\|Ga0310813_11814733	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	573	Open in IMG/M
3300031716\|Ga0310813_12082620	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	536	Open in IMG/M
3300031740\|Ga0307468_100966280	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	746	Open in IMG/M
3300032180\|Ga0307471_104291573	All Organisms → cellular organisms → Bacteria → Acidobacteria	503	Open in IMG/M
3300032205\|Ga0307472_100915936	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	813	Open in IMG/M
3300032421\|Ga0310812_10458197	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	574	Open in IMG/M
3300033412\|Ga0310810_10164072	All Organisms → cellular organisms → Bacteria	2563	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	50.00%
Host-Associated	Host-Associated	50.00%

Habitat	Taxonomy	Distribution
Plants	Host-Associated → Plants	50.00%
Terrestrial	Environmental → Terrestrial	49.02%
Aquatic	Environmental → Aquatic	0.98%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	49.02%
Rhizosphere	Host-Associated → Plants → Rhizosphere	32.35%
Rhizoplane	Host-Associated → Plants → Rhizoplane	16.67%
Marine	Environmental → Aquatic → Marine	0.98%
Roots	Host-Associated → Plants → Roots	0.98%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	29.41%
Loam	Environmental → Terrestrial → Soil → Loam	19.61%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	18.63%
Soil	Host-Associated → Plants → Rhizosphere → Soil	13.73%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	10.78%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	5.88%
Wetlands	Environmental → Aquatic → Marine → Wetlands	0.98%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.98%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	19.61%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	18.63%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	15.69%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	13.73%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	10.78%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	5.88%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	5.88%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	2.94%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	2.94%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	0.98%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.98%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.98%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.98%

Habitat	Taxonomy	Distribution
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	11.76%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	7.84%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	6.86%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	6.86%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	5.88%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	5.88%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	5.88%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	3.92%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	3.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	2.94%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	2.94%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	2.94%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	2.94%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	2.94%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	1.96%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	1.96%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Corn, Switchgrass And Miscanthus Rhizosphere	1.96%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere	1.96%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.96%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.96%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	0.98%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	0.98%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.98%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.98%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.98%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.98%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Switchgrass Rhizosphere	0.98%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.98%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.98%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.98%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.98%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.98%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.98%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.98%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.98%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2162886013	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk Soil	Environmental	Open in IMG/M
3300000559	Amended soil microbial communities from Kansas Great Prairies, USA - control no BrdU total DNA F1.4 TC clc assemly	Environmental	Open in IMG/M
3300000789	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000953	Soil microbial communities from Great Prairies - Kansas Corn soil	Environmental	Open in IMG/M
3300004013	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_CattailA_D2	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300005289	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2	Host-Associated	Open in IMG/M
3300005290	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1	Host-Associated	Open in IMG/M
3300005293	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1	Host-Associated	Open in IMG/M
3300005328	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG	Host-Associated	Open in IMG/M
3300005330	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005333	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG	Host-Associated	Open in IMG/M
3300005334	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2	Host-Associated	Open in IMG/M
3300005337	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG	Environmental	Open in IMG/M
3300005338	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2	Host-Associated	Open in IMG/M
3300005345	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG	Environmental	Open in IMG/M
3300005354	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG	Host-Associated	Open in IMG/M
3300005355	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG	Host-Associated	Open in IMG/M
3300005356	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG	Host-Associated	Open in IMG/M
3300005364	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG	Host-Associated	Open in IMG/M
3300005406	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG	Environmental	Open in IMG/M
3300005438	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaG	Environmental	Open in IMG/M
3300005440	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG	Environmental	Open in IMG/M
3300005441	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG	Environmental	Open in IMG/M
3300005444	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005549	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG	Environmental	Open in IMG/M
3300005564	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG	Host-Associated	Open in IMG/M
3300005616	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2	Host-Associated	Open in IMG/M
3300005617	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2	Host-Associated	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300006237	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2)	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009148	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009177	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG	Host-Associated	Open in IMG/M
3300009551	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300010037	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot25	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300010401	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300011119	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG	Host-Associated	Open in IMG/M
3300012910	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S198-509B-2	Environmental	Open in IMG/M
3300012955	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MG	Environmental	Open in IMG/M
3300013100	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG	Host-Associated	Open in IMG/M
3300014326	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG	Host-Associated	Open in IMG/M
3300014969	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG	Host-Associated	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300025315	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)	Host-Associated	Open in IMG/M
3300025885	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025893	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025899	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025908	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025918	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025923	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025926	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025930	Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)	Environmental	Open in IMG/M
3300025931	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025934	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025936	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes)	Environmental	Open in IMG/M
3300025941	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025942	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025961	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026075	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300026088	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300031716	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300032421	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NN3	Environmental	Open in IMG/M
3300033412	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NC	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
SwBSRL2_0215.00002010	2162886013	Switchgrass Rhizosphere	VPKHSAKVVCYEGSVWISPRQFWGLVRDNIIEYVSEPPLTGKFKGQPADFLVTVNHTVLSLACPEHRQSVLHSKRYTKR
SwBSRL2_0415.00004610	2162886013	Switchgrass Rhizosphere	MCRGGSVWISPRQFWKLVRENLVEYLSEPPLTGKFRGRPADFLVTINHTILNMACPEHRSEVLLSKRFMKMKKRKSVSV
F14TC_1001827792	3300000559	Soil	GIKRFLARFPLGLSPRCIVPSKTKRSAKIMCRGGSVWISPRQFWKLVRENLVEYLSEPPLTGKFRGRPADFLVTISHTILNTACPEHRSEVLLSKRFMKMKKRKSVSV*
JGI1027J11758_127807771	3300000789	Soil	VPSRHSAKVVCYEGSVWISPRQFWGLVRDNLVEYLSEPPLTGKFKGQPSDFLVTLNHTILNQACPEHRQSVLLSKRYTKK*
JGI1027J11758_128802962	3300000789	Soil	VSSKTKRSAKIMCRGGSVWISPRQFWTLVRENLVEYLSEPPLTGKFRGRPADFLVTINHTILNTACPEHRSEVLLSKRFMKMKKRKPVSV*
JGI11615J12901_100524103	3300000953	Soil	VWISPRQFWGLVREDVIEYLNERPLTGKFKGQRNDFLVTINHTILNLACPEHRQSVLLSKRYAKK*
Ga0055465_100723012	3300004013	Natural And Restored Wetlands	MYTALAPQGDSRSGLRGGVGVSSKHSAKVLCLEGSVWISPRQFWVLVRDDIIEYISEPPLTGKFKGQQSDFLVTLNHTVLSLACPEHRQSYLHAKRYAKR*
Ga0062590_1005215551	3300004157	Soil	VPKHSAKVVCYEGSVWIAPRQFWGLVRDNIIEYVSEPPLTGKFKGQPADFLVTVNHTVLSLACPEHRQSVLHSKRYTKR*
Ga0065704_104448891	3300005289	Switchgrass Rhizosphere	MCRGGSVWISPRQFWKLVRENLVEYLSEPPLTGKFRGRPADFLVTINHTILNMACPEHRSEVLLSKRFMKMKKRKSVSV*
Ga0065712_101846031	3300005290	Miscanthus Rhizosphere	FGGKRVPKHSAKVVCYEGSVWIAPRQFWGLVRDNIIEYVSEPPLTGKFKGQPADFLVTVNHTVLSLACPEHRQSVLHSKRYTKR*
Ga0065715_100349641	3300005293	Miscanthus Rhizosphere	VPKXSAXVVCYEGSVWISPRQFWXXVRDNIIEYVSEPPLTGKFKGQPADFLVTVNHTVLSLACPEHRQSVLHSKRYTKR*
Ga0070676_112195072	3300005328	Miscanthus Rhizosphere	FFGGKRVPKHSAKVVCYEGSVWIAPRQFWGLVRDNIIEYVSEPPLTGKFKGQPADFLVTVNHTVLSLACPEHRQSVLHSKRYTKR*
Ga0070690_1001660681	3300005330	Switchgrass Rhizosphere	WISPRQFWKLVRENLVEYLSEPPLTGKFRGRPADFLVTVNHTILNTACPEHRSEVLLSKRFMKLKKRKSVSV*
Ga0066388_1003011633	3300005332	Tropical Forest Soil	VPSTTKRSAKIICRGGSVWVSPRQFWDLVRESLVEYLSEPPLTGKFRGRPAEFLVMINHTILNMACPEHRSAVLLSKRFMKRRKSVSA*
Ga0066388_1041635401	3300005332	Tropical Forest Soil	VASRHSAKVVCFEGSVWISPRQFWGLVRDDIIEYLDEHPLTGKFKGQPDDFLISINHTVLNITCPEHRQSVLHSKRYVKK*
Ga0070677_105965062	3300005333	Miscanthus Rhizosphere	MCRGGSVWISPRQFWKLVRENLVEYLSEPPLTGKFRGRPADFLVTVNHTILNTACPEHRSEVLLSKRFMKLKKRKPVSV*
Ga0068869_1000745043	3300005334	Miscanthus Rhizosphere	MEIPYSGDFFGGKRVPKHSAKVVCYEGSVWISPRQFWGLVRDNIIEYVSEPPLTGKFKGQPADFLVTINHTVLSLACPEHRQSVLHSKRYTKR*
Ga0068869_1001490582	3300005334	Miscanthus Rhizosphere	MCRGGSVWISPRQFWKLVRENLVEYLSEPPLTGKFRGRPADFLVTVNHTILNTACPEHRSEVLLSKRFMKLKKRKSVSV*
Ga0068869_1003438102	3300005334	Miscanthus Rhizosphere	VPKKSARVVCYEGSVWISPRQFWKLVKDNLIEYISEPPLTGKFKGQPADFLVTVNHTVLNMACPEHRQSVLFSKRYTKK*
Ga0070682_1006978052	3300005337	Corn Rhizosphere	IPYSGDFFGGKRVPKHSAKVVCYEGSVWISPRQFWALVRDNIIEYVSEPPLTGKFKGQPADFLVTVNHTVLSLACPEHRQSVLHSKRYTKR*
Ga0068868_1001743502	3300005338	Miscanthus Rhizosphere	MEIPYSGDFFGGKRVPKHSAKVVCYEGSVWISPRQFWALVRDNIIEYVSEPPLTGKFKGQPADFLVTVNHTVLSLACPEHRQSVLHSKRYTKR*
Ga0070692_105334622	3300005345	Corn, Switchgrass And Miscanthus Rhizosphere	VPKHSAKVVCYEGSVWISPRQFWALVRDNIIEYVSEPPLTGKFKGQPADFLVTVNHTVLSLACPEHRQSVLHSKRYTKR*
Ga0070675_1015239212	3300005354	Miscanthus Rhizosphere	LSTGCIVSSKTKRSAKIMCRGGSVWISPRQFWKLVRENLVEYLSEPPLTGKFRGRPADFLVTVNHTILNTACPEHRSEVLLSKRFMKLKKRKSVSV*
Ga0070671_1001607312	3300005355	Switchgrass Rhizosphere	VPKHSAKVVCYEGSVWISPRQFWGLVRDHIIEYVSEPPLTGKFKGQQADFLVTVNHTVLSLACPEHRQSVLVSKRYTKR*
Ga0070671_1008979482	3300005355	Switchgrass Rhizosphere	SKTKRSAKIMCRGGSVWISPRQFWKLVRENLVEYLSEPPLTGKFRGRPADFLVTVNHTILNTACPEHRSEVLLSKRFMKLKKRKSVSV*
Ga0070674_1004063312	3300005356	Miscanthus Rhizosphere	KTQHFAVLARFPLGLNLGCIVSSKTKRSAKIMCRGGSVWISPRQFWKLVRENLVEYLSEPPLTGKFRGRPTDFLVTVNHTILNTACPEHRSEVLLSKRFMKLKKRKSVSV*
Ga0070673_1002768363	3300005364	Switchgrass Rhizosphere	MEIPYSGDFFGGKRVPKHSAKVVCYEGSVWISPRQFWGLVRDNIIEYVSEPPLTGKFKGQPADFLVTVNHTVLSLACPEHRQSVLHSKRYTKR*
Ga0070703_1000014216	3300005406	Corn, Switchgrass And Miscanthus Rhizosphere	MCRGGSVWISPRQFWQLVRENLVEYLSEPPLTGKFRGRPADFLVTINHTILNMACPEHRSEVLLSKRLMKLKKRKPVSV*
Ga0070701_107326181	3300005438	Corn, Switchgrass And Miscanthus Rhizosphere	KTKRSAKIMCRGGSVWISPRQFWKLVRENLVEYLSEPPLTGKFRGRPADFLVTINHTILNMACPEHRSEVLLSKRFMKMKKRKSVSV*
Ga0070705_1000465102	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	MEIPVSEVFGGIRLPGTSKHSAKVVCSERSVWISPRQFWKLVRDDIVEYLDERPLRGRFKGSHSDFLVTVNHTVLSLTSPEHRREVIDSRRFMKR*
Ga0070705_1000880972	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	VPKHSAKVVCYEGSVWISPRQFWGLVRDNIIEYVSEPPLTGKFKGQPADFLVTVNHTVLSLACPEHRQSVLHSKRYTKR*
Ga0070700_1018207351	3300005441	Corn, Switchgrass And Miscanthus Rhizosphere	MCRGGSVWISPRQFWKLVRENLVEYLSEPPLTGKFRGRPTDFLVTVNHTILNTACPEHRSEVLLS
Ga0070694_1000745191	3300005444	Corn, Switchgrass And Miscanthus Rhizosphere	DFFGGKRVPKHSAKVVCYEGSVWISPRQFWALVRDNIIEYVSEPPLTGKFKGQPADFLVTVNHTVLSLACPEHRQSVLHSKRYTKR*
Ga0070707_10000414111	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	VSSKTKRSAKIMCRGGSVWISPRQFWQLVRENLVEYLSEPPLTGKFRGRPADFLVTINHTILNMACPEHRSEVLLSKRFMKMKKRKPVSV*
Ga0070704_1000119573	3300005549	Corn, Switchgrass And Miscanthus Rhizosphere	MCRGGSVWISPRQFWQLVRENLVEYLSEPPLTGKFRGRPADFLVTINHTILNMACPEHRSEVLLSKRFMKMKKRKPVSV*
Ga0070664_1018604502	3300005564	Corn Rhizosphere	PKHSAKVVCYEGSVWISPRQFWGLVRDNIIEYVSEPPLTGKFKGQPADFLVTVNHTVLSLACPEHRQSVLHSKRYTKR*
Ga0068852_1015428451	3300005616	Corn Rhizosphere	MEIPEGEVFGGIRLPGTSKHSAKVVCSERSVWISPRQFWKLVRDDIVEYLDERPLRGRFKGSHSDFLVTVNHTVLSLTSPEHRREVIDSRR
Ga0068859_1026726831	3300005617	Switchgrass Rhizosphere	MCRGGSVWISPRQFWKLVRENLVEYLSEPPLTGKFRGRPADFLVTVNHTILNTACPEHRSEVLLSKRFMK
Ga0066905_1021016801	3300005713	Tropical Forest Soil	VASRHSAKVVCFQGSVWISPRQFWGLIQDDIIEYLSERPLTGKFRGQPNDFLVTINHTVLNSACPEHRQSVLLSKRYAKK*
Ga0097621_1005384682	3300006237	Miscanthus Rhizosphere	MCRGGSVWISPRQFWKLVRENLVEYLSEPPLTGKFRGRPADFLVTVNHTILNTACPEHRSEVLLSKRFM
Ga0075434_1000658543	3300006871	Populus Rhizosphere	MASRHSAKVVCFEGSVWISPRQFWGLVRDDIIEYLDEHPLTGKFKGQPNDFLISINHTVLNITCPEHRQSVIHSKRYVKK*
Ga0075434_1024668371	3300006871	Populus Rhizosphere	SVWISPRQFWGLVRDNLVEYLSEPPLTGKFKGHPSDFLVTLNHTILNQACPEHRQSVLLSKRYTKK*
Ga0075424_1002612722	3300006904	Populus Rhizosphere	VPSRHSAKIVCYEGSVWISPRQFWGLVRDNLVEYLSEPPLTGKFKGQPSDFLVTLNHTILNQACPEHRQSVLLSKRYTKK*
Ga0075424_1021264321	3300006904	Populus Rhizosphere	VPSTSKRSAKVICYGGEVWVSPRQFWQMVRENLIDYLTEPPLTGKFKGVPADFLVSVNHTILSLACPEHRASVLSSKRHMKRRKSSAL*
Ga0105245_119813282	3300009098	Miscanthus Rhizosphere	VWISPRQFWGLVRDDIIEYLDERPLTGKFKGQPDDFLVTINHTVLNMTCPEHRQSVIHSKRYAKK*
Ga0075418_103671993	3300009100	Populus Rhizosphere	LGCIVSSKTKRSAKIMCRGGSVWISPRQFWKLVRENLVEYLSEPPLTGKFRGRPADFLVTINHTILNMACPEHRSEVLLSKRFMKMKKRKSVSV*
Ga0105243_107370732	3300009148	Miscanthus Rhizosphere	VSSKTKRSAKIMCRGGSVWISPRQFWKLVRENLVEYLSEPPLTGKFRGRPTDFLVTVNHTILNTACPEHRSEVLLSKRFMKLKKRKPVSV*
Ga0075423_109573151	3300009162	Populus Rhizosphere	VWVSPRQFWDLVRESLVEYLSEPPLTGKFRGRPADFLVMINHTILNMACPEHRSAVLLSKRFMKKRKSVSA*
Ga0105248_101005314	3300009177	Switchgrass Rhizosphere	MEIPYSGDFFGGKRVPKHSAKVVCHEGSVWISPRQFWGLVRDHIIEYVSEPPLTGKFKGQQADFLVTVNHTVLSLACQDHR
Ga0105238_120720871	3300009551	Corn Rhizosphere	VASRHSAKVVCFEGSVWISPRQFWGLVRDDIIEYLDERPLTGKFKGQPNDFLISINHTVLNITCPEHRQSVIHSKRYVKR
Ga0105249_101460062	3300009553	Switchgrass Rhizosphere	VSSKTKRSAKIMCRGGSVWISPRQFWKLVRENLVEYLSEPPLTGKFRGRPTDFLVTVNHTILNTACPEHRSEVLLSKRFMKLKKRKSVSV*
Ga0126304_100361843	3300010037	Serpentine Soil	VSSKHSAKVVCYEGNVWISPRQFWGLVRDDIIEYLSEFPLTGKFKGQPSDFLVSVNHTVLSLACPEHRQSVLFSKRYTKK*
Ga0126384_100968002	3300010046	Tropical Forest Soil	VSSKTKHSAKIMCRGGSVWISPRQFWSLVRENLVEYLSEPPLTGKFRGRPADFLVTINHTVLNMACPEHRSAVLLSKRFMKKRKS
Ga0126376_100223291	3300010359	Tropical Forest Soil	VWVSPRQFWGLVRESLVEYLGEPPLTGKFRGRPADFLVMINHTILNMACPEHRSAVLLSRRFMKKRKS
Ga0134128_103562582	3300010373	Terrestrial Soil	MEIPYSGDFFGGKRVPKHSAKVVCYEGSVWISPRQFWALVRDNIIEYVSEPPLTGKFKGQPADFLVTINHTVLSLA
Ga0134128_128850011	3300010373	Terrestrial Soil	MEIPAKGEVFGGIRLPSSSKHSAKVVCYERSVWISPRQFWKLVRDDIVEYLDERPLTGSFKGSHADFLVTVNHTVLSLTSPEHRREVIDSRRF
Ga0134124_101696191	3300010397	Terrestrial Soil	MEIPYSGDFFGGKRVPKHSAKVVCYEGSVWISPRQFWGLVRDNIIEYVSEPPLTGKFKGQPADFLVTVNHTVLSLACPEH
Ga0134124_116930912	3300010397	Terrestrial Soil	VSSKTKRSAKIMCRGGSVWISPRQFWQLVRENLVEYLSEPPLTGKFRGRPADFLVTINHTILNTACPEHRSEVLLSKRFMKMKKRKPVSA*
Ga0134127_117453602	3300010399	Terrestrial Soil	MCRGGSVWISPRQFWKLVRENLVEYLSEPPLTGKFRGRPTDFLVTVNHTILNTACPEHRSEVLLSKRFMKLKKRKSVSV*
Ga0134122_122155692	3300010400	Terrestrial Soil	LGTGCIVSSKTKRSAKIMCRGGSVWIAPRQFWQLVRENLVEYLSEPPLTGKFRGRPADFLVTVNHTILNTACPEHRSEVLLSKRFMKMKKRKSVSI*
Ga0134121_105005201	3300010401	Terrestrial Soil	MCRGGSVWIAPRQFWKLVRENLVEYLSEPPLTGKFRGRPADFLVTVNHTILNTACPEHRSEVLLSKRFMKLKKRKSVSV*
Ga0134123_100112253	3300010403	Terrestrial Soil	MEIPYSGDFFGGKRVPKHSAKVVCYEGSVWISPRQFWALVRDNIIEYVSEPPLTGKFKGQPADFLVTINHTVLSLACPEHRQSVLHSKRYTKR*
Ga0105246_105207472	3300011119	Miscanthus Rhizosphere	MCRGGSVWIAPRQFWKLVRENLVEYLSEPPLTGKFRGRPADFLVTVNHTILNTACPEHRSEVLLSKRFMKMKKRKSVSV*
Ga0157308_103743662	3300012910	Soil	SAKIMCRGGSVWISPRQFWKLVRENLVEYLSEPPLTGKFRGRPADFLVTVNHTILNTACPEHRSEVLLSKRFMKLKKRKPVSV*
Ga0164298_113198771	3300012955	Soil	MEIPYSGDFFGGKRVPKHSAKVVCYEGSVWISPRQFWGLVRDHIIEYVSEPPLTGKFKGQQADFLVTVNHTVLSLACPEHRQSVLVSKRYTKR
Ga0157373_110024602	3300013100	Corn Rhizosphere	SAKVVCSEKSVWISPRQFWKLVRDDIVEYLDERPLRGRFKGSHSDFLVTVNHTVLSLTSPEHRREVIDSRRFMKR*
Ga0157380_132937231	3300014326	Switchgrass Rhizosphere	EVCGGVGVPKKSARVVCYEGSVWISPRQFWKLVKDNLIEYISEPPLTGKFKGQPADFLVTVNHTVLSLACPEHRQSVLHSKRYTKR*
Ga0157376_100869551	3300014969	Miscanthus Rhizosphere	MEIPYSGDFFGGKRVPKHSAKVVCYEGSVWISPRQFWALVRDNIIEYVSEPPLTGKFKGQPADFLVTVNHTVLSLACPEHRQS
Ga0157376_114787331	3300014969	Miscanthus Rhizosphere	VSSKTKHSAKILCRGGSVWISPRQFWLLVRENLVEYVSEPPLTGKFRGQPTDFLVTISHTILNMACPEHRSEVLVSKRFMKNRK*
Ga0132258_107614462	3300015371	Arabidopsis Rhizosphere	VASRHSAKVVCFEGSVWISPRQFWGLVRDDIIEYLDEHPLTGKFKGQPNDFLISINHTVLNITCPEHRQSVLHSKRYVKK*
Ga0132258_117017783	3300015371	Arabidopsis Rhizosphere	VSSKTKRSAKIMCRGGSVWISPRQFWKLVRENLVEYLSEPPLTGKFRGRPADFLVTVNHTILNTACPEHRSEVLLSKRFMKMKKRKPVSV*
Ga0132256_1028536011	3300015372	Arabidopsis Rhizosphere	LGLNLGCIVSSKTKRSAKIMCRGGSVWISPRQFWKLVRENLVEYLSEPPLTGKFRGRPADFLVTINHTILNMTCPEHRSEVLLSKRFMKLKKRKSVSA*
Ga0132257_1013172701	3300015373	Arabidopsis Rhizosphere	MEIPYSGDFLGGKRVPKHSAKVVCYEGSVWISPRQFWGLVRDNIIEYVSEPPLTGKFKGQPADFLVTVNHTVLSLACPEHRQSVLYSKRYTKR*
Ga0190270_107963902	3300018469	Soil	EGNVWISPRQFWGLVRDDIIEYLSEFPLTGKFKGQPSDFLVSVNHTVLSLACPEHRRSVLFSKRYTKK
Ga0066669_107814391	3300018482	Grasslands Soil	IPKRLSLGCIVSSKTKRSAKIMCRGGSVWISPRQFWQLVRENLVEYLSEPPLTGKFRGRPADFLVTINHTILNMTCPEHRSEVLFSKRFMKKRKSVSV
Ga0207697_100484143	3300025315	Corn, Switchgrass And Miscanthus Rhizosphere	MEIPYSGDFFGGKRVPKHSAKVVCYEGSVWISPRQFWALVRDNIIEYVSEPPLTGKFKGQPADFLVTVNHTVLSLACPEHRQSVLHSKRYTKR
Ga0207653_1000024716	3300025885	Corn, Switchgrass And Miscanthus Rhizosphere	MCRGGSVWISPRQFWQLVRENLVEYLSEPPLTGKFRGRPADFLVTINHTILNMACPEHRSEVLLSKRLMKLKKRKPVSV
Ga0207682_102252231	3300025893	Miscanthus Rhizosphere	MCRGGSVWISPRQFWKLVRENLVEYLSEPPLTGKFRGRPADFLVTVNHTILNTACPEHRSEVLLSKRFMKLKKRKPVSV
Ga0207642_103860781	3300025899	Miscanthus Rhizosphere	MCRGGSVWISPRQFWKLVRENLVEYLSQPPLTGKFRGRPADFLVTINHTILNMACPEHRSEVLLSKRFMKMKKRKSVSV
Ga0207643_100562453	3300025908	Miscanthus Rhizosphere	MEIPYSGDFFGGKRVPKHSAKVVCYEGSVWISPRQFWGLVRDNIIEYVSEPPLTGKFKGQPADFLVTVNHTVLSLACPEHRQSVLHSKRYTKR
Ga0207662_106293202	3300025918	Switchgrass Rhizosphere	VSSKTKRSAKIMCRGGSVWISPRQFWKLVRENLVEYLSEPPLTGKFRGRPADFLVTVNHTILNTACPEHRSEVLLSKRFMKLKKRKSVSV
Ga0207646_100177083	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	MCRGGSVWISPRQFWQLVRENLVEYLSEPPLTGKFRGRPADFLVTINHTILNMACPEHRSEVLLSKRFMKMKKRKPVSV
Ga0207681_106355202	3300025923	Switchgrass Rhizosphere	MEIPYSGDFFGGKRVPKHSAKVVCYEGSVWISPRQFWALVRDNIIEYVSEPPLTGKFKGQPADFLVTVNHTVLSLACPEHR
Ga0207659_108724512	3300025926	Miscanthus Rhizosphere	LSTGCIVSSKTKRSAKIMCRGGSVWISPRQFWKLVRENLVEYLSEPPLTGKFRGRPADFLVTVNHTILNTACPEHRSEVLLSKRFMKLKKRKSVSV
Ga0207701_100334892	3300025930	Corn, Switchgrass And Miscanthus Rhizosphere	MCRGGSVWISPRQFWKLVRENLVEYLSEPPLTGKFRGRPTDFLVTVNHTILNTACPEHRSEVLLSKRFMKLKKRKSVSV
Ga0207701_100620402	3300025930	Corn, Switchgrass And Miscanthus Rhizosphere	MEIPYSGDFFGGKRVPKHSAKVVCYEGSVWIAPRQFWGLVRDNIIEYVSEPPLTGKFKGQPADFLVTVNHTVLSLACPEHRQSVLHSKRYTKR
Ga0207644_101396552	3300025931	Switchgrass Rhizosphere	VPKHSAKVVCYEGSVWISPRQFWGLVRDHIIEYVSEPPLTGKFKGQQADFLVTVNHTVLSLACPEHRQSVLVSKRYTKR
Ga0207644_108830682	3300025931	Switchgrass Rhizosphere	STGCIVSSKTKRSAKIMCRGGSVWISPRQFWKLVRENLVEYLSEPPLTGKFRGRPADFLVTVNHTILNTACPEHRSEVLLSKRFMKLKKRKSVSV
Ga0207686_102839221	3300025934	Miscanthus Rhizosphere	MEIPYSGDFFGGKRVPKHSAKVVCYEGSVWISPRQFWGLVRDNIIEYVSEPPLTGKFKGQPADFLVTVNHTVLSLACPEHR
Ga0207670_103464712	3300025936	Switchgrass Rhizosphere	VSSKTKRSAKIMCRGGSVWISPRQFWKLVRENLVEYLSEPPLTGKFRGRPTDFLVTVNHTILNTACPEHRSEVLLSKRFMKLKKRKSVSV
Ga0207711_101318232	3300025941	Switchgrass Rhizosphere	MCRGGSVWISPRQFWKLVRENLVEYLSEPPLTGKFRGRPADFLVTVNHTILNTACPEHRSEVLLSKRFMKLKKRKSVSV
Ga0207689_104571021	3300025942	Miscanthus Rhizosphere	LGEVCGGVGVPKKSARVVCYEGSVWISPRQFWKLVKDNLIEYISEPPLTGKFKGQPADFLVTVNHTVLNMACPEHRQSVLFSKRYTKK
Ga0207712_101369472	3300025961	Switchgrass Rhizosphere	VPKHSAKVVCYEGSVWIAPRQFWGLVRDNIIEYVSEPPLTGKFKGQPADFLVTVNHTVLSLACPEHRQSVLHSKRYTKR
Ga0207708_100170493	3300026075	Corn, Switchgrass And Miscanthus Rhizosphere	MCRGGSVWISPRQFWQLVRENLVEYLSEPPLTGKFRGRPADFLVTINHTILNMACPEHRSEVLLAKRFMKMKKRKSVSV
Ga0207641_102386963	3300026088	Switchgrass Rhizosphere	VSSKTKRSAKIMCRGGSVWISPRQFCQLVRENLVEYLSEPPLTGKFRGRPADFLVTINHTILNTACPEHRSEVLLSKRFMKLKKRKSVSV
Ga0310813_118147332	3300031716	Soil	VSSKTKRSAKIMCRGGSVWISPRQFWKLVRENLVEYLSEPPLTGKFRGRPTDFLVTVNHTILNTACPEHRSEVLLSKRFMKLKKRKPVSV
Ga0310813_120826202	3300031716	Soil	SAKVVCFDGSVWISPRQFWGLVRDDIIEYLDERPLTGKFKGQPNDFLISINHTVLNITCPEHRQSVIHSKRYVKK
Ga0307468_1009662801	3300031740	Hardwood Forest Soil	VSSKTKRSAKIMCRGGSVWISPRQFWKLVRENLVEYLSEPPLTGKFRGRPADFLVTINHTILNVACPEHRSEVLLSKRFMKMKKRKPVSV
Ga0307471_1042915731	3300032180	Hardwood Forest Soil	QFWQLVRENLVEYLSEPPLTGKFRGRPADFLVTINHTILNMACPEHRSEVLLSKRFMKLKKRKPVSV
Ga0307472_1009159362	3300032205	Hardwood Forest Soil	MCRGGSVWISPRQFWQLVRENLVEYLSEPPLTGKFRGRPADFLVTINHTILNMACPEHRSEVLLSKRFMKLKKR
Ga0310812_104581971	3300032421	Soil	VASRHSAKVVCFDGSVWISPRQFWGLVRDDIIEYLDERPLTGKFKGQPNDFLISINHTVLNITCPEHRQSVIHSKRYVKK
Ga0310810_101640721	3300033412	Soil	CFEGSVWISPRQFWGLVRDDIIEYLDERPLTGKFKGQPNDFLISINHTVLNITCPEHRQSVIHSKRYVKK

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F101388

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences