Metagenome Family F101385

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F101385
Family Type	Metagenome
Number of Sequences	102
Average Sequence Length	60 residues
Representative Sequence	MSDRIALARAIAARTKPRFIEIPRERGGGKVPFTEEQLSEIRGGLTAEEYRWKLIKQTR
Number of Associated Samples	75
Number of Associated Scaffolds	102

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	30.39 %
% of genes near scaffold ends (potentially truncated)	32.35 %
% of genes from short scaffolds (< 2000 bps)	96.08 %
Associated GOLD sequencing projects	71
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.39

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (73.529 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere (8.823 % of family members)
Environment Ontology (ENVO)	Unclassified (53.922 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (72.549 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 36.78% β-sheet: 0.00% Coil/Unstructured: 63.22%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.39
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.39
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 102 Family Scaffolds
PF11752	DUF3309	2.94
PF01381	HTH_3	0.98
PF11159	DUF2939	0.98
PF03795	YCII	0.98
PF13426	PAS_9	0.98
PF04120	Iron_permease	0.98
PF01979	Amidohydro_1	0.98
PF02602	HEM4	0.98

COG ID	Name	Functional Category	% Frequency in 102 Family Scaffolds
COG1587	Uroporphyrinogen-III synthase	Coenzyme transport and metabolism [H]	0.98
COG2350	YciI superfamily enzyme, includes 5-CHQ dehydrochlorinase, contains active-site pHis	Secondary metabolites biosynthesis, transport and catabolism [Q]	0.98

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	73.53 %
All Organisms	root	All Organisms	26.47 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	73.53 %
cellular organisms	root	All Organisms → cellular organisms	26.47 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	73.53 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	26.47 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	73.53 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	23.53 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	73.53 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	23.53 %
Gemmatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	73.53 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	18.63 %
Gemmatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	73.53 %
unclassified Hyphomicrobiales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales	5.88 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	5.88 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	3.92 %
Phyllobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae	1.96 %
Gemmatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	73.53 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	5.88 %
Hyphomicrobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium	3.92 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2.94 %
unclassified Hyphomicrobiaceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae	0.98 %
Hoeflea	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Hoeflea	0.98 %
Methyloceanibacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter	0.98 %
Mesorhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium	0.98 %
Gemmatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	73.53 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	5.88 %
Hyphomicrobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium	3.92 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	2.94 %
Hyphomicrobiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	0.98 %
unclassified Hoeflea	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Hoeflea → unclassified Hoeflea	0.98 %
Methyloceanibacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter	0.98 %
Mesorhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium	0.98 %
Gemmatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	73.53 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	5.88 %
Hyphomicrobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium	3.92 %
Bradyrhizobium sp. sBnM-33	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. sBnM-33	2.94 %
Hoeflea sp. EC-HK425	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Hoeflea → unclassified Hoeflea → Hoeflea sp. EC-HK425	0.98 %
Hyphomicrobiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	0.98 %
Methyloceanibacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter	0.98 %
Mesorhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium	0.98 %
Gemmatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	0.98 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000789\|JGI1027J11758_11251980	Not Available	540	Open in IMG/M
3300004020\|Ga0055440_10110447	Not Available	663	Open in IMG/M
3300005093\|Ga0062594_101524280	Not Available	687	Open in IMG/M
3300005093\|Ga0062594_102987902	Not Available	528	Open in IMG/M
3300005205\|Ga0068999_10012299	Not Available	1166	Open in IMG/M
3300005330\|Ga0070690_100019156	Not Available	4148	Open in IMG/M
3300005337\|Ga0070682_100418459	Not Available	1018	Open in IMG/M
3300005340\|Ga0070689_100176417	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium	1734	Open in IMG/M
3300005340\|Ga0070689_100893159	Not Available	786	Open in IMG/M
3300005344\|Ga0070661_100348039	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1162	Open in IMG/M
3300005345\|Ga0070692_10390059	Not Available	876	Open in IMG/M
3300005355\|Ga0070671_101318218	Not Available	637	Open in IMG/M
3300005356\|Ga0070674_101592625	Not Available	589	Open in IMG/M
3300005365\|Ga0070688_101815093	Not Available	501	Open in IMG/M
3300005367\|Ga0070667_100915607	Not Available	817	Open in IMG/M
3300005435\|Ga0070714_101973266	Not Available	569	Open in IMG/M
3300005456\|Ga0070678_101848206	Not Available	570	Open in IMG/M
3300005459\|Ga0068867_101440104	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium	640	Open in IMG/M
3300005466\|Ga0070685_10809753	Not Available	691	Open in IMG/M
3300005529\|Ga0070741_10078663	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	3645	Open in IMG/M
3300005543\|Ga0070672_100797520	Not Available	831	Open in IMG/M
3300005546\|Ga0070696_101907518	Not Available	515	Open in IMG/M
3300005615\|Ga0070702_100112942	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	1688	Open in IMG/M
3300005719\|Ga0068861_101094079	Not Available	766	Open in IMG/M
3300005764\|Ga0066903_106714079	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	598	Open in IMG/M
3300005764\|Ga0066903_108442308	Not Available	525	Open in IMG/M
3300006237\|Ga0097621_100695067	Not Available	936	Open in IMG/M
3300006237\|Ga0097621_101026800	Not Available	772	Open in IMG/M
3300006854\|Ga0075425_103114225	Not Available	505	Open in IMG/M
3300007076\|Ga0075435_101341864	Not Available	626	Open in IMG/M
3300009053\|Ga0105095_10683688	Not Available	572	Open in IMG/M
3300009098\|Ga0105245_12378316	Not Available	583	Open in IMG/M
3300009098\|Ga0105245_13087103	Not Available	516	Open in IMG/M
3300009101\|Ga0105247_10085731	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1992	Open in IMG/M
3300009101\|Ga0105247_10290029	Not Available	1131	Open in IMG/M
3300009101\|Ga0105247_10566718	Not Available	837	Open in IMG/M
3300009101\|Ga0105247_11074278	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium	633	Open in IMG/M
3300009148\|Ga0105243_11170278	Not Available	781	Open in IMG/M
3300009148\|Ga0105243_11273248	Not Available	751	Open in IMG/M
3300009166\|Ga0105100_10242541	Not Available	1077	Open in IMG/M
3300009174\|Ga0105241_10696391	Not Available	927	Open in IMG/M
3300009174\|Ga0105241_10755905	Not Available	892	Open in IMG/M
3300009176\|Ga0105242_11455227	Not Available	714	Open in IMG/M
3300009176\|Ga0105242_12352081	Not Available	580	Open in IMG/M
3300009176\|Ga0105242_13089431	Not Available	516	Open in IMG/M
3300009177\|Ga0105248_12949550	Not Available	542	Open in IMG/M
3300009811\|Ga0105084_1079947	Not Available	602	Open in IMG/M
3300010366\|Ga0126379_10751493	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1072	Open in IMG/M
3300010373\|Ga0134128_11018855	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium	915	Open in IMG/M
3300010376\|Ga0126381_104008455	Not Available	573	Open in IMG/M
3300011119\|Ga0105246_10780491	Not Available	846	Open in IMG/M
3300011119\|Ga0105246_11313279	Not Available	671	Open in IMG/M
3300012204\|Ga0137374_10350740	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1190	Open in IMG/M
3300012206\|Ga0137380_11347964	All Organisms → cellular organisms → Bacteria	598	Open in IMG/M
3300012355\|Ga0137369_10560164	Not Available	800	Open in IMG/M
3300012469\|Ga0150984_120699672	Not Available	1086	Open in IMG/M
3300012971\|Ga0126369_10774350	Not Available	1040	Open in IMG/M
3300013102\|Ga0157371_10791464	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	714	Open in IMG/M
3300013296\|Ga0157374_12893120	Not Available	507	Open in IMG/M
3300013297\|Ga0157378_10271782	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium	1630	Open in IMG/M
3300013297\|Ga0157378_10941531	Not Available	896	Open in IMG/M
3300013306\|Ga0163162_13072961	Not Available	536	Open in IMG/M
3300013307\|Ga0157372_10877591	Not Available	1041	Open in IMG/M
3300013307\|Ga0157372_11504360	Not Available	775	Open in IMG/M
3300013308\|Ga0157375_10494736	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1387	Open in IMG/M
3300013308\|Ga0157375_12981423	Not Available	565	Open in IMG/M
3300013308\|Ga0157375_13120339	Not Available	553	Open in IMG/M
3300014308\|Ga0075354_1003845	Not Available	1897	Open in IMG/M
3300014326\|Ga0157380_13185571	Not Available	524	Open in IMG/M
3300014968\|Ga0157379_11567553	Not Available	642	Open in IMG/M
3300014968\|Ga0157379_12457670	Not Available	520	Open in IMG/M
3300014969\|Ga0157376_11194419	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	789	Open in IMG/M
3300014969\|Ga0157376_12693649	Not Available	537	Open in IMG/M
3300015371\|Ga0132258_10145868	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Methyloceanibacter	5669	Open in IMG/M
3300015371\|Ga0132258_10345934	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Hoeflea → unclassified Hoeflea → Hoeflea sp. EC-HK425	3675	Open in IMG/M
3300015372\|Ga0132256_101500498	Not Available	785	Open in IMG/M
3300015373\|Ga0132257_101623208	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	827	Open in IMG/M
3300015374\|Ga0132255_105921628	All Organisms → cellular organisms → Bacteria	517	Open in IMG/M
3300017792\|Ga0163161_10303582	Not Available	1258	Open in IMG/M
3300017792\|Ga0163161_10537664	Not Available	956	Open in IMG/M
3300017944\|Ga0187786_10228986	Not Available	724	Open in IMG/M
3300017974\|Ga0187777_10342592	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1027	Open in IMG/M
3300018481\|Ga0190271_13703327	Not Available	512	Open in IMG/M
3300021560\|Ga0126371_13437179	Not Available	535	Open in IMG/M
3300025915\|Ga0207693_11028071	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	628	Open in IMG/M
3300025916\|Ga0207663_11092073	Not Available	641	Open in IMG/M
3300025986\|Ga0207658_10709027	Not Available	910	Open in IMG/M
3300026035\|Ga0207703_11458670	Not Available	658	Open in IMG/M
3300026089\|Ga0207648_10301221	Not Available	1438	Open in IMG/M
3300026089\|Ga0207648_10956319	Not Available	801	Open in IMG/M
3300026121\|Ga0207683_10515653	Not Available	1105	Open in IMG/M
3300028379\|Ga0268266_10416455	Not Available	1273	Open in IMG/M
3300028379\|Ga0268266_10525622	Not Available	1132	Open in IMG/M
3300030006\|Ga0299907_10256745	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1434	Open in IMG/M
3300031949\|Ga0214473_11621154	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. sBnM-33	647	Open in IMG/M
3300033433\|Ga0326726_10262203	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. sBnM-33	1612	Open in IMG/M
3300033551\|Ga0247830_11230243	Not Available	598	Open in IMG/M
3300034090\|Ga0326723_0129584	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. sBnM-33	1102	Open in IMG/M
3300034090\|Ga0326723_0138559	Not Available	1066	Open in IMG/M
3300034090\|Ga0326723_0173516	Not Available	952	Open in IMG/M
3300034090\|Ga0326723_0297687	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	724	Open in IMG/M
3300034090\|Ga0326723_0482540	Not Available	568	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Host-Associated	Host-Associated	56.86%
Environmental	Environmental	43.14%

Habitat	Taxonomy	Distribution
Plants	Host-Associated → Plants	56.86%
Terrestrial	Environmental → Terrestrial	39.22%
Aquatic	Environmental → Aquatic	3.92%

Habitat	Taxonomy	Distribution
Rhizosphere	Host-Associated → Plants → Rhizosphere	41.18%
Soil	Environmental → Terrestrial → Soil	33.33%
Rhizoplane	Host-Associated → Plants → Rhizoplane	13.73%
Peat	Environmental → Terrestrial → Peat	5.88%
Freshwater	Environmental → Aquatic → Freshwater	1.96%
Marine	Environmental → Aquatic → Marine	1.96%
Roots	Host-Associated → Plants → Roots	1.96%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	31.37%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	15.69%
Loam	Environmental → Terrestrial → Soil → Loam	13.73%
Soil	Host-Associated → Plants → Rhizosphere → Soil	9.80%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	7.84%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	5.88%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	3.92%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	2.94%
Sediment	Environmental → Aquatic → Freshwater → Sediment	1.96%
Wetlands	Environmental → Aquatic → Marine → Wetlands	1.96%
Soil	Host-Associated → Plants → Rhizoplane → Soil	1.96%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	1.96%
Sand	Environmental → Terrestrial → Soil → Sand	0.98%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	31.37%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	11.76%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	10.78%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	9.80%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	7.84%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	5.88%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	3.92%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	2.94%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	1.96%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	1.96%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.96%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	1.96%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	1.96%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	1.96%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.98%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.98%
Uranium Contaminated	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated	0.98%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	0.98%

Habitat	Taxonomy	Distribution
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	8.82%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	7.84%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	5.88%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	4.90%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	4.90%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	4.90%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	4.90%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	3.92%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	3.92%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	2.94%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	2.94%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	2.94%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	2.94%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	2.94%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	1.96%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	1.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.96%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	1.96%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	1.96%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.96%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	1.96%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	1.96%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	1.96%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	1.96%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	1.96%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.98%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.98%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.98%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.98%
Soil	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil	0.98%
Natural And Restored Wetlands	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands	0.98%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.98%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.98%
Groundwater Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand	0.98%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.98%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.98%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	0.98%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000789	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300004020	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_TuleC_D2	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005205	Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_TuleC_D2	Environmental	Open in IMG/M
3300005330	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG	Environmental	Open in IMG/M
3300005337	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG	Environmental	Open in IMG/M
3300005340	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG	Environmental	Open in IMG/M
3300005344	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG	Host-Associated	Open in IMG/M
3300005345	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG	Environmental	Open in IMG/M
3300005355	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG	Host-Associated	Open in IMG/M
3300005356	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG	Host-Associated	Open in IMG/M
3300005365	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG	Environmental	Open in IMG/M
3300005367	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG	Host-Associated	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005456	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG	Host-Associated	Open in IMG/M
3300005459	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2	Host-Associated	Open in IMG/M
3300005466	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG	Environmental	Open in IMG/M
3300005529	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen16_06102014_R1	Environmental	Open in IMG/M
3300005543	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG	Host-Associated	Open in IMG/M
3300005546	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG	Environmental	Open in IMG/M
3300005615	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG	Environmental	Open in IMG/M
3300005719	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2	Host-Associated	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006237	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2)	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300009053	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (3) Depth 19-21cm March2015	Environmental	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009101	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG	Host-Associated	Open in IMG/M
3300009148	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG	Host-Associated	Open in IMG/M
3300009166	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (1) Depth 10-12cm May2015	Environmental	Open in IMG/M
3300009174	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG	Host-Associated	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300009177	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG	Host-Associated	Open in IMG/M
3300009811	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N3_20_30	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300011119	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG	Host-Associated	Open in IMG/M
3300012204	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_100_16 metaG	Environmental	Open in IMG/M
3300012206	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaG	Environmental	Open in IMG/M
3300012355	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_113_16 metaG	Environmental	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300013102	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG	Host-Associated	Open in IMG/M
3300013296	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG	Host-Associated	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300013307	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG	Host-Associated	Open in IMG/M
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated	Open in IMG/M
3300014308	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_TuleC_D1	Environmental	Open in IMG/M
3300014326	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG	Host-Associated	Open in IMG/M
3300014968	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG	Host-Associated	Open in IMG/M
3300014969	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG	Host-Associated	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300017792	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG	Host-Associated	Open in IMG/M
3300017944	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0815_BV2_10_20_MG	Environmental	Open in IMG/M
3300017974	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_10_MG	Environmental	Open in IMG/M
3300018481	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 356 T	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025916	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025986	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026035	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026089	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026121	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300028379	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300030006	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT152D67	Environmental	Open in IMG/M
3300031949	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT98D197	Environmental	Open in IMG/M
3300033433	Lab enriched peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF15MN	Environmental	Open in IMG/M
3300033551	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day5	Environmental	Open in IMG/M
3300034090	Peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF00N	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI1027J11758_112519802	3300000789	Soil	ALAREIAARTPPRFVSIPRERRSKVPFTEEQLAAMRGGLTAEEYRWKTIRNWGKRRSKSQPS*
Ga0055440_101104472	3300004020	Natural And Restored Wetlands	MSDRKALARAIAARTKPRFIEIPRERGGGKVPFTEDQLNDIRGGLTAEEY
Ga0062594_1015242803	3300005093	Soil	MSDRIALAREIAAGTKPRFIEIPRERGEERCPSPRSSSSAMRGGLTAEEYCWKLIRQHSN
Ga0062594_1029879022	3300005093	Soil	MPSMSDRIALARAIAARTKPRFIEIPRERGGGKVPFTWEQLSDIRERLTAEEYRWKLIREWCED*
Ga0068999_100122993	3300005205	Natural And Restored Wetlands	VTDARAIAARSEPRFIVIPPQRGGSKVHFTEEQLTAMRGGLTVEEYRLKTIRKWVRRG*
Ga0070690_1000191561	3300005330	Switchgrass Rhizosphere	MSNRIGLARAIAARTKPRFIEIPRERGGGKVPFTKEQLSEIRGGLTAEEYRKLIKRSR*
Ga0070682_1004184592	3300005337	Corn Rhizosphere	MPSMSDRIALAHAIAARTKPRFIEIPRERGGGKEPFTWEQLSDIRERLTAEEYRWKLIREWCED*
Ga0070689_1001764171	3300005340	Switchgrass Rhizosphere	MSDRLKLPRIAARSTPRFIEIPHERGGGKVPFTEEQLTGMRGGLTAEEYRWKLIREWSEE
Ga0070689_1008931591	3300005340	Switchgrass Rhizosphere	MSDRIALARAIAARTKPRFIEIPRETVSFTEEQLSEMRGGLTAEEYRWKLIRQHSRKLCEQKQQGENR*
Ga0070661_1003480392	3300005344	Corn Rhizosphere	MSDRIALARAIAARTKPRFIEIPRERGGGKVPFTDEQLTEMRGGLTAEEYRAYIIRKFGM
Ga0070692_103900594	3300005345	Corn, Switchgrass And Miscanthus Rhizosphere	MSDRIGLARAIAARTKPRFIEIPRERGGGKVPFTKEQLSEIRGGLTAEEYRKLIKRSR*
Ga0070671_1013182183	3300005355	Switchgrass Rhizosphere	AARTKPRFIEIPRERGGGKVPFTEEQLSEIRGGLTAEEYRWKLIKQTR*
Ga0070674_1015926252	3300005356	Miscanthus Rhizosphere	MSDRIALAREIAAGTKPRFIEIPRERGEERCPSPRSSSSAMRGGLTAEEYCWKLIRQHSNKPCEQKHQGEKR*
Ga0070688_1018150932	3300005365	Switchgrass Rhizosphere	MSDRIALAGAIAARTKPRFIEITRERGGGKVPFTEEQLSEIRGGLTADEYRWKRIRKSR*
Ga0070667_1009156072	3300005367	Switchgrass Rhizosphere	RIGLARAIAARTKPRFIEIPRERGGGKVPFTKEQLSEIRGGLTAEEYRKLIKRSR*
Ga0070714_1019732661	3300005435	Agricultural Soil	MTSKIIARKIAARSKPRFIEIPHERKSKVPFTEEQLRELRGGMTAEEYRAYLIRKWGSK*
Ga0070678_1018482062	3300005456	Miscanthus Rhizosphere	MPSMSDRIALARPIAARTKPRFIEIPRERGGGKVPFTWEQLSDIRERLTAEEYRWKLIREWCED*
Ga0068867_1014401041	3300005459	Miscanthus Rhizosphere	RAIAARTKPRFIEIPRERGGGKEPFTWEQLSDIRERLTAEEYRWKLIREWSEE*
Ga0070685_108097533	3300005466	Switchgrass Rhizosphere	IAARTKPRFIEIPRERGGGKVPFTEEQLSEIRGGLTAEEYRWKLIKQTR*
Ga0070741_100786633	3300005529	Surface Soil	MKKLARAVAARSEPRFITIRRERGGGKAHYTEEQLTVMRGGLTAEEYRWKLIRKWGKH*
Ga0070672_1007975202	3300005543	Miscanthus Rhizosphere	FCHQRYLQMSDRIALARAIAACTKPRFIEIPRERGGGKVPFTEEHLSEIRGGLTVEEYRWKLIRQHSRKLCEQKQQGKKR*
Ga0070696_1019075181	3300005546	Corn, Switchgrass And Miscanthus Rhizosphere	MSDRKALARAIAARTQSRFIEIQRERGGGKVPFTEEQLSDMRGGLTVEEYRTYIIRKFGK
Ga0070702_1001129421	3300005615	Corn, Switchgrass And Miscanthus Rhizosphere	MVIAKSDRIALARAIAARTKPRFIEIPRETVSFTEEQLSEMRGGLTAEEYRWKLIRQHSRKLCEQK
Ga0068861_1010940792	3300005719	Switchgrass Rhizosphere	MSDRIALARAIAARTKPRFIEIPRERGGAKVPFTDEQLTEMRGGLTAEEYRAYIIRKFGM
Ga0066903_1067140793	3300005764	Tropical Forest Soil	MDRLALARAIAARTKPRFIEIPRQRRSKVPYTEEQLAELRGGMTAEEYRRYLIRKFGDR*
Ga0066903_1084423081	3300005764	Tropical Forest Soil	MKKREPGPRTIAARTKPRFIEIPRERRSKVYTEEQLAELRGGMTAEEYRRYLIRKFGNK*
Ga0097621_1006950672	3300006237	Miscanthus Rhizosphere	MSDRIGLARAIAARTKPRFIEIPRERGGGKVRFTKEQLSEIRGGLTAEEYRKLIKRSR*
Ga0097621_1010268001	3300006237	Miscanthus Rhizosphere	TVGPLLMSDRIALARAIAARTKPRFIEIPRETVSFTEEQLSEMRDGLTAEEYRWKLIRQHSRKLCEQKQQGKKR*
Ga0075425_1031142252	3300006854	Populus Rhizosphere	VSGMTSKIIARKIAARSKPRFIEIPHERKSKVPFTEEQLRELRGGMTAEEYRAYLIRKWGSK*
Ga0075435_1013418641	3300007076	Populus Rhizosphere	GYWGVSGMTSKIIARKIAARSKPRFIEIPHERKSKVPFTEEQLRELRGGMTAEEYRAACF
Ga0105095_106836882	3300009053	Freshwater Sediment	MSDRIKLARAIAARTKPRFIEITRGRGGLRAPFADEQFAAMRGGLSAEE*
Ga0105245_123783161	3300009098	Miscanthus Rhizosphere	MSDRIALAREIAARTKPRFIEIPRERGGGKVPFTEEQLMEMRGGLTAEEYRWKLIRKSL*
Ga0105245_130871032	3300009098	Miscanthus Rhizosphere	AIAARTKPRFIEIPRERGGGKEPFTWEQLSDIRERLTAEEYRWKLIRERCED*
Ga0105247_100857311	3300009101	Switchgrass Rhizosphere	MSDRIALARAIAARTKPRFIEIPRETVSFTEEQLSEMRGGLTAEEYRWKLIRQHSRKLCEQKQQG
Ga0105247_102900292	3300009101	Switchgrass Rhizosphere	MSDRIALARAIAARTKPRFIEIPRERGGGKVPFTEEQLSEIRGGLTADEYRWKRIRKSR*
Ga0105247_105667182	3300009101	Switchgrass Rhizosphere	MSDRIALARAIAACTKPRFIEIPRERGGGKVPFTEEHLSEIRGGLTVEEYRWKLIRQHSRKLCEQKQQGKKR*
Ga0105247_110742782	3300009101	Switchgrass Rhizosphere	MSDRIALARAIAARTKPRFIEIPRERGGGKVPFTEEQLSEIRGGLTAEEYRWKLIKQTC*
Ga0105243_111702781	3300009148	Miscanthus Rhizosphere	MKTAASVGVLRCTTKPRFIEIPRERGGGKVPFTEEHLSEIRGGLTVEEYRWKLIRQHSRKLCEQKQQGKKR*
Ga0105243_112732481	3300009148	Miscanthus Rhizosphere	MSDRIALARAIAARTKPRFIEIPRERGGGKVPFTEEQLKQIRGGLTAEEYRWKLIRQHSRKLCEQKQQGENR*
Ga0105100_102425412	3300009166	Freshwater Sediment	MSDRKALAREIAARTKPRIIEITRERGGGKVPFTDEELTAMRGGRTAEEYRWKLIR
Ga0105241_106963911	3300009174	Corn Rhizosphere	MSDRIALARAIAARTKPRFIEIPRERGGGKVPFTEEHLSEIRGGLTVEEYRWKLIRQHSRKLCEQKQQGKKR*
Ga0105241_107559052	3300009174	Corn Rhizosphere	LARAIAARTKPRFIEIPRERGGGKVRFTKEQLSEIRGGLTAEEYRKLIKRSR*
Ga0105242_114552272	3300009176	Miscanthus Rhizosphere	MSNRIGLARAIAARTKPRFIEIPRERGGGKVRFTKEQLSEIRGGLTAEEYRKLIKRSR*
Ga0105242_123520812	3300009176	Miscanthus Rhizosphere	MCDRIALARAIAARIKPRFIEIPRETVPFTEEQLTQMRGGLTAEEYRAYIIRKFGK*
Ga0105242_130894311	3300009176	Miscanthus Rhizosphere	MSDRLALARAIAARTKPRFIEIPRERGGSKVAFTEEQLNDIRGGLTAEEYRWKLIREWQEWSPREGPSF*
Ga0105248_129495501	3300009177	Switchgrass Rhizosphere	MSDRIALARAIAARTKPRFIEIPRERGGGKVPFTEEQLSAMRGGLTAEEYRAYIIRKFGK
Ga0105084_10799472	3300009811	Groundwater Sand	VKLKLAREIAARTKPRFIEIPRERKGVKVLYTEEQLTAMRGGLTAEEYRWKLIREWREQYRQENVP*
Ga0126379_107514933	3300010366	Tropical Forest Soil	EQQRLALARAIAARTKSRFIEIPRQRRNKAPYTEEQLAELRGGMTAEEYRRYLIRKFGDR
Ga0134128_110188551	3300010373	Terrestrial Soil	LAREIAARTKPRFIEIPRERGGGKVPFNEAQLTAIRGGLTAEEYRWKLIREFN*
Ga0126381_1040084552	3300010376	Tropical Forest Soil	MDRLALARAIAARTKPRFIEIPRQRRSKAPYTEEQLAELRGGMTAEEYRRYLIHKFGDR*
Ga0105246_107804912	3300011119	Miscanthus Rhizosphere	MSDRIALARAIAARTKPRFIEIPRERGGGKVPFTDEQLNEIRGGLTAEEYRAYIVRKFGK
Ga0105246_113132793	3300011119	Miscanthus Rhizosphere	MSDRIALARAIAARTKPRFIEIPRERGGGKVPFTWEQLSDIRERLTAEEYR
Ga0137374_103507402	3300012204	Vadose Zone Soil	MSDRVALARAIAARTKPRFIEIPGERRRKVPFTKEELLAIRGGRTAEEYRRYLIRTWG
Ga0137380_113479642	3300012206	Vadose Zone Soil	LLPISLVLAMRDRKVLARAIAARTKPRLNDIPRERRTKVRFTEEEILAVRGGRTAEEYRRYLIRTWGEE*
Ga0137369_105601643	3300012355	Vadose Zone Soil	MGSPHPDRLALARAIAARSAPRFIEIPRERRGSQVPFTEAELSAIRGGLSAEQYRLDLIRKWGKG*
Ga0150984_1206996721	3300012469	Avena Fatua Rhizosphere	MSNRKALARAIAARTKPRFIEIPRERSKVPFTEEELRANRGGRTAGEYRLHLIRTCIKA*
Ga0126369_107743502	3300012971	Tropical Forest Soil	MDRLALARAIAARTKPRFIEIPRQRRNKAPYTEEQLAELRGGMTAEEYRRYLIHKFGDR*
Ga0157371_107914641	3300013102	Corn Rhizosphere	DRIALARAIAARTKPRFIEIPRERGGGKVPFTDEQLTEMRGGLTADEYRAYINRKFAM*
Ga0157374_128931202	3300013296	Miscanthus Rhizosphere	MSDRIALAHAIAARTKPRFIEIPRERGGGKEPFTWEQLSDIRERLTAE
Ga0157378_102717822	3300013297	Miscanthus Rhizosphere	MSDRIALARTIAARTKPRFIESPRERGGGKVPFTEEQLSEIRGGLTAEEYRWKLIKQTR*
Ga0157378_109415311	3300013297	Miscanthus Rhizosphere	IRATVGPLLMSDRIALARAIAARTKPRFIEIPRETVSFTEEQLSEMRGGLTAEEYRWKLIRQHSRKLCEQKQQGENR*
Ga0163162_130729612	3300013306	Switchgrass Rhizosphere	RAIAARTKPRFIEIPRERGGGKVPFTWEQLSDIRERLTAEEYRWKLIREWCED*
Ga0157372_108775911	3300013307	Corn Rhizosphere	MSDRIALAHAIAARTKPRFIEIPRERGGGKEPFTWEQLSDIRERLTAEEYRWKLIRE
Ga0157372_115043602	3300013307	Corn Rhizosphere	LARAIAARTKPRFIEIPRERGGGKVPFTKEQLSEIRGGLTAEEYRKLIKRSR*
Ga0157375_104947361	3300013308	Miscanthus Rhizosphere	MSDRIALARAIAACTKPRFIEIPRERGGGKVPFTEEHLSEIRGGLTVEEYRWKLIRQHSRKLCEQKQQGKKN*
Ga0157375_129814232	3300013308	Miscanthus Rhizosphere	MSDRIALARAIAARTKPRFIEIPRERGGGKVPFTEEQLTAMRGGLTAEEYRWKLIREWCEK*
Ga0157375_131203391	3300013308	Miscanthus Rhizosphere	RAIAARTKPRFIEIPRETVPFTEEQLSEMRGGLTAEEYRWKLIRQHSRKLCEQKQQGENR
Ga0075354_10038451	3300014308	Natural And Restored Wetlands	MKNLARAIAARSEPRFIAIPPQRGGSKVHFTEEQLTAMRGGLTVEEYRLKTIRKWVRRG*
Ga0157380_131855711	3300014326	Switchgrass Rhizosphere	MSDRIALARAIAARTKPRFIEIPRETVPFTEEQLSEMRGGLTAEEYRWKLIRQHSRKLCEQKQQGENR*
Ga0157379_115675533	3300014968	Switchgrass Rhizosphere	IAARTKPRFIEIPRERGGGKVPFNEAQLTAIRGGLTAEEYRWKLIREFN*
Ga0157379_124576701	3300014968	Switchgrass Rhizosphere	MCDRIALARAIAARTKPRFIEIPRETVPFTEEQLTQMRGGLTAKEYRAYIIRKFGK*
Ga0157376_111944191	3300014969	Miscanthus Rhizosphere	KPRFIEIPRERGGSKVAFTEEQLNDIRGGLTAEEYRWKLIREWQEWSPREGPSF*
Ga0157376_126936492	3300014969	Miscanthus Rhizosphere	MSDRIALARAIAARTKPRFIEIPRERGGGKVPFTEEQLSEIRGGLTAEEYRWKLIKQTR*
Ga0132258_101458686	3300015371	Arabidopsis Rhizosphere	MSDRPKLAREIAAPTKPRFIEIPREKRKTGTFTEEQLTEMRGGLTVEEYRWKLIRHHGRADREA*
Ga0132258_103459346	3300015371	Arabidopsis Rhizosphere	VKLNLARQIAARTKPRFIEIPRERGGGKVPFTEEQLTAIRGGLTAEEYRWKLIREWG*
Ga0132256_1015004981	3300015372	Arabidopsis Rhizosphere	MSDRIALARAIAARTKPRFIEIPRERAGGKVPFTEEQLTVMRGGLTAEEYRAYIIRKFGK
Ga0132257_1016232082	3300015373	Arabidopsis Rhizosphere	MSDRIALARAIAARTKPRFIEIPRERGGGKVPFTEEQLTVMRGGLTAEEYRAYIIRKFGK
Ga0132255_1059216281	3300015374	Arabidopsis Rhizosphere	MSDRVKIAREIAARTKPWFIEILRERGGGKVPFTEEQLTAMRGGLTAEEYRAYIIRKFG
Ga0163161_103035821	3300017792	Switchgrass Rhizosphere	RIALARAIAARTKPRFIEIPRERGGGKVPFTEEQLSEIRGGLTADEYRCKRIRKSR
Ga0163161_105376641	3300017792	Switchgrass Rhizosphere	MSNRKTLVRAIAARTKPRFIEIPRERGGVRVPFTEEELNSTRGGLTAEEYRWKLI
Ga0187786_102289861	3300017944	Tropical Peatland	MRKLARAIAARTEPRFINIPRERGGGRVHYTEEQLTAMRGGLTAEEYRWTLIRKWMKR
Ga0187777_103425922	3300017974	Tropical Peatland	MTDRIALARAIAARTKPRFIEIPRERRSKVPFTEEQLAAMRGEMTAEEYRWYLIRKFGDR
Ga0190271_137033271	3300018481	Soil	MSDRLELAREIAARTKPRFIEMPRERRRSVAYTEGQLTAMRGGLTAEEYRRKFIRKSGKK
Ga0126371_134371791	3300021560	Tropical Forest Soil	MDRLALARAIAARTKPRFIEIPRQRRSKVPYTEEQLAELRGGMTAEEYRRYLIHIILLLLHKI
Ga0207693_110280711	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	MTARIAIARAIAARSEPRFIAIEPKRGGAKVHFTDEQLSAMRGGLTVEQYRRKTIRKWEK
Ga0207663_110920732	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	MSDRIALARAIAARTKPRFIEIPRETVSFTEEQLSEMRGGLTAEEYRWKLIRQHSRKLCEQKQQGENR
Ga0207658_107090271	3300025986	Switchgrass Rhizosphere	MSDRIALARAIGARTNPRASVGAGRCFTDEQLAELRGGLTAEEYRWKLIKQTR
Ga0207703_114586701	3300026035	Switchgrass Rhizosphere	MSDRIALARAIAARTKPRFIEIPRETVPFTEEQLSEMRGGLTAEEYRWKLIRQHSRKLCEQKQQGENR
Ga0207648_103012212	3300026089	Miscanthus Rhizosphere	MSDRIALARAIAARTKPRFIEIPRERGGGKVPFTEEHLSQIRGGLTVEEYRWKLIRLHLK
Ga0207648_109563192	3300026089	Miscanthus Rhizosphere	MSDRLALARAIAARTKPRFIEIPRERGGSKVAFTEEQLNDIRGGLTAEEYRWKLIREWQEWSPREGPSF
Ga0207683_105156532	3300026121	Miscanthus Rhizosphere	MSDRIALARPIAARTKPRFIEIPRERGGGKVPFTWEQLSDIRERLTAEEYRWKLIREWCE
Ga0268266_104164552	3300028379	Switchgrass Rhizosphere	MKTAASVGVLRCTTKPRFIEIPRERGGGKVPFTEEHLSEIRGGLTVEEYRWKLIRQHSRKLCEQKQQGKKR
Ga0268266_105256222	3300028379	Switchgrass Rhizosphere	MSDRIALARAIAARTKPRFIEILRERGGGKVPFTDEQLTEMRGGLTAEEYRAYIIRKFGM
Ga0299907_102567453	3300030006	Soil	MTDRLKLAREIAARTKPRFIEIPRERRRSVAFTEEQLTAMRGGLTAEEYRLKFIRKWTKR
Ga0214473_116211542	3300031949	Soil	MSDRVKFACAIAARTKPRFIEIPREKRSGVPFTDEQLTAIRGGLTAEEYRWKLIREWLEE
Ga0326726_102622033	3300033433	Peat Soil	LRLLAREIAARTKPRFIEIPRERGGGKVPFTDEQLTTMRGGLTAEEYRWMLIRD
Ga0247830_112302431	3300033551	Soil	VKLKLARVIAARTEPRFIEIPRERGGGKVPFTQEQLTAMRGGLTAEEYRWKRIREWCED
Ga0326723_0129584_186_350	3300034090	Peat Soil	LRLLAREIAARTKPRFIEIPRERGGGKVPFTDEQLTTMRGGLTAEEYRWKLIRD
Ga0326723_0138559_182_367	3300034090	Peat Soil	MSDRIALARAIAARTKPRFIEIPREKRKTVPFTKEQLTTIRGGLTAEEYRRKLIRDWGDQ
Ga0326723_0173516_7_204	3300034090	Peat Soil	MSDRIALARAIAARTKPRFIDIPREKRKTVPFTEEELVVMRGGLTAEEYRWRADTQAFEKLVLGE
Ga0326723_0297687_260_442	3300034090	Peat Soil	MSDRKALAREIAARTKPRFIEIPREKRKTIPFTDEELAAMRGGLTAEEYRWKLIREWGEE
Ga0326723_0482540_3_179	3300034090	Peat Soil	MSDRLRLAREIAARTKPRFVEIPRERGGGKVPFADEQLKAIRGGLTAEEYRWKLIREWR

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F101385

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences