Metagenome Family F101372

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F101372
Family Type	Metagenome
Number of Sequences	102
Average Sequence Length	42 residues
Representative Sequence	MATVLIVEDEDQVRVLAESYLREQGHQTVSAATAEEALA
Number of Associated Samples	91
Number of Associated Scaffolds	102

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	94.12 %
% of genes near scaffold ends (potentially truncated)	96.08 %
% of genes from short scaffolds (< 2000 bps)	94.12 %
Associated GOLD sequencing projects	87
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.66

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (54.902 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (20.588 % of family members)
Environment Ontology (ENVO)	Unclassified (31.373 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (53.922 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 26.87% β-sheet: 14.93% Coil/Unstructured: 58.21%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.66
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.66
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 102 Family Scaffolds
PF00072	Response_reg	6.86
PF02738	MoCoBD_1	3.92
PF02663	FmdE	2.94
PF02811	PHP	2.94
PF00135	COesterase	1.96
PF00441	Acyl-CoA_dh_1	1.96
PF10518	TAT_signal	0.98
PF10431	ClpB_D2-small	0.98
PF09347	DUF1989	0.98
PF01977	UbiD	0.98
PF02518	HATPase_c	0.98
PF01553	Acyltransferase	0.98
PF03372	Exo_endo_phos	0.98
PF00563	EAL	0.98
PF01850	PIN	0.98
PF07536	HWE_HK	0.98
PF13518	HTH_28	0.98
PF04454	Linocin_M18	0.98
PF07733	DNA_pol3_alpha	0.98
PF03401	TctC	0.98

COG ID	Name	Functional Category	% Frequency in 102 Family Scaffolds
COG2191	Formylmethanofuran dehydrogenase subunit E	Energy production and conversion [C]	2.94
COG1960	Acyl-CoA dehydrogenase related to the alkylation response protein AidB	Lipid transport and metabolism [I]	1.96
COG2272	Carboxylesterase type B	Lipid transport and metabolism [I]	1.96
COG0043	3-polyprenyl-4-hydroxybenzoate decarboxylase	Coenzyme transport and metabolism [H]	0.98
COG0587	DNA polymerase III, alpha subunit	Replication, recombination and repair [L]	0.98
COG2176	DNA polymerase III, alpha subunit (gram-positive type)	Replication, recombination and repair [L]	0.98
COG2200	EAL domain, c-di-GMP-specific phosphodiesterase class I (or its enzymatically inactive variant)	Signal transduction mechanisms [T]	0.98
COG3181	Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctC	Energy production and conversion [C]	0.98
COG3434	c-di-GMP phosphodiesterase YuxH/PdeH, contains EAL and HDOD domains	Signal transduction mechanisms [T]	0.98
COG3920	Two-component sensor histidine kinase, HisKA and HATPase domains	Signal transduction mechanisms [T]	0.98
COG4251	Bacteriophytochrome (light-regulated signal transduction histidine kinase)	Signal transduction mechanisms [T]	0.98
COG4943	Redox-sensing c-di-GMP phosphodiesterase, contains CSS-motif and EAL domains	Signal transduction mechanisms [T]	0.98
COG5001	Cyclic di-GMP metabolism protein, combines GGDEF and EAL domains with a 6TM membrane domain	Signal transduction mechanisms [T]	0.98

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.90 %
All Organisms	root	All Organisms	45.10 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.90 %
cellular organisms	root	All Organisms → cellular organisms	45.10 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.90 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	45.10 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.90 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	36.27 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.90 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	24.51 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.90 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	9.80 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	9.80 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	1.96 %
Pseudomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.90 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	8.82 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	6.86 %
Acetobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	1.96 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	0.98 %
Pseudomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae	0.98 %
Methylobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.90 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	8.82 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	6.86 %
Roseomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Roseomonas	1.96 %
Methylobacterium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium	0.98 %
Pseudomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas	0.98 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.90 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	8.82 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	3.92 %
Roseomonas mucosa	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Roseomonas → Roseomonas mucosa	1.96 %
Bradyrhizobium barranii	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium barranii	0.98 %
unclassified Pseudomonas	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → unclassified Pseudomonas	0.98 %
Methylobacterium fujisawaense	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium → Methylobacterium fujisawaense	0.98 %
Bradyrhizobium japonicum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium japonicum	0.98 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	54.90 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	8.82 %
Bradyrhizobium sp. MOS002	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. MOS002	1.96 %
Roseomonas mucosa	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Roseomonas → Roseomonas mucosa	1.96 %
Bradyrhizobium barranii subsp. apii	subspecies	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium barranii → Bradyrhizobium barranii subsp. apii	0.98 %
Bradyrhizobium sp. CCBAU 51753	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. CCBAU 51753	0.98 %
Pseudomonas sp. CBZ-4	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → unclassified Pseudomonas → Pseudomonas sp. CBZ-4	0.98 %
Bradyrhizobium sp. AUGA SZCCT0158	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. AUGA SZCCT0158	0.98 %
Methylobacterium fujisawaense	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium → Methylobacterium fujisawaense	0.98 %
Bradyrhizobium japonicum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium japonicum	0.98 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	0.98 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2124908006\|FWIROz_GKA24FP02FPLQ9	Not Available	512	Open in IMG/M
3300001867\|JGI12627J18819_10214167	All Organisms → cellular organisms → Bacteria → Proteobacteria	777	Open in IMG/M
3300004114\|Ga0062593_102269925	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → unclassified Pseudomonas → Pseudomonas sp. CBZ-4	609	Open in IMG/M
3300005160\|Ga0066820_1001548	All Organisms → cellular organisms → Bacteria → Proteobacteria	1028	Open in IMG/M
3300005181\|Ga0066678_10725490	All Organisms → cellular organisms → Bacteria → Proteobacteria	661	Open in IMG/M
3300005332\|Ga0066388_104687948	All Organisms → cellular organisms → Bacteria → Proteobacteria	696	Open in IMG/M
3300005332\|Ga0066388_105260368	Not Available	656	Open in IMG/M
3300005435\|Ga0070714_101023539	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	804	Open in IMG/M
3300005446\|Ga0066686_10736550	All Organisms → cellular organisms → Bacteria → Proteobacteria	662	Open in IMG/M
3300005560\|Ga0066670_10707278	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	610	Open in IMG/M
3300005764\|Ga0066903_108170494	All Organisms → cellular organisms → Bacteria → Proteobacteria	536	Open in IMG/M
3300006046\|Ga0066652_100609391	Not Available	1031	Open in IMG/M
3300006057\|Ga0075026_100612665	All Organisms → cellular organisms → Bacteria	641	Open in IMG/M
3300006237\|Ga0097621_101775189	All Organisms → cellular organisms → Bacteria → Proteobacteria	588	Open in IMG/M
3300006800\|Ga0066660_11423678	Not Available	544	Open in IMG/M
3300006806\|Ga0079220_11237857	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium → Methylobacterium fujisawaense	620	Open in IMG/M
3300006852\|Ga0075433_11700593	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium japonicum	543	Open in IMG/M
3300006893\|Ga0073928_10378197	Not Available	1041	Open in IMG/M
3300006914\|Ga0075436_100771162	Not Available	715	Open in IMG/M
3300009092\|Ga0105250_10539015	Not Available	534	Open in IMG/M
3300010159\|Ga0099796_10528805	Not Available	529	Open in IMG/M
3300010358\|Ga0126370_10102053	Not Available	1987	Open in IMG/M
3300010359\|Ga0126376_11242819	All Organisms → cellular organisms → Bacteria	762	Open in IMG/M
3300010360\|Ga0126372_11001394	Not Available	847	Open in IMG/M
3300010360\|Ga0126372_11545140	Not Available	701	Open in IMG/M
3300010362\|Ga0126377_12450218	Not Available	598	Open in IMG/M
3300010366\|Ga0126379_12815398	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. MOS002	582	Open in IMG/M
3300010371\|Ga0134125_11665546	Not Available	694	Open in IMG/M
3300010376\|Ga0126381_103277562	Not Available	639	Open in IMG/M
3300012212\|Ga0150985_122370778	Not Available	504	Open in IMG/M
3300012494\|Ga0157341_1035926	Not Available	555	Open in IMG/M
3300012908\|Ga0157286_10192645	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	682	Open in IMG/M
3300012924\|Ga0137413_10191517	Not Available	1368	Open in IMG/M
3300012948\|Ga0126375_10529385	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	885	Open in IMG/M
3300012948\|Ga0126375_11491398	Not Available	577	Open in IMG/M
3300012960\|Ga0164301_10275958	Not Available	1118	Open in IMG/M
3300014499\|Ga0182012_10324721	All Organisms → cellular organisms → Bacteria	1032	Open in IMG/M
3300015371\|Ga0132258_11718218	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1583	Open in IMG/M
3300016294\|Ga0182041_10439641	All Organisms → cellular organisms → Bacteria → Proteobacteria	1118	Open in IMG/M
3300016294\|Ga0182041_11250568	Not Available	678	Open in IMG/M
3300016294\|Ga0182041_11705090	Not Available	583	Open in IMG/M
3300016357\|Ga0182032_10080563	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. AUGA SZCCT0158	2235	Open in IMG/M
3300016357\|Ga0182032_10124300	Not Available	1867	Open in IMG/M
3300016422\|Ga0182039_10366261	Not Available	1214	Open in IMG/M
3300016422\|Ga0182039_11526739	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. MOS002	609	Open in IMG/M
3300016445\|Ga0182038_10905773	Not Available	777	Open in IMG/M
3300017936\|Ga0187821_10129363	Not Available	945	Open in IMG/M
3300017942\|Ga0187808_10102539	Not Available	1245	Open in IMG/M
3300018034\|Ga0187863_10510828	Not Available	673	Open in IMG/M
3300018433\|Ga0066667_10819404	All Organisms → cellular organisms → Bacteria → Proteobacteria	793	Open in IMG/M
3300021168\|Ga0210406_10846582	Not Available	692	Open in IMG/M
3300021170\|Ga0210400_11499394	Not Available	535	Open in IMG/M
3300021402\|Ga0210385_10085215	All Organisms → cellular organisms → Bacteria → Proteobacteria	2176	Open in IMG/M
3300022557\|Ga0212123_10904704	Not Available	519	Open in IMG/M
3300025893\|Ga0207682_10172444	Not Available	984	Open in IMG/M
3300025906\|Ga0207699_11486979	Not Available	501	Open in IMG/M
3300025916\|Ga0207663_11348776	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium barranii → Bradyrhizobium barranii subsp. apii	574	Open in IMG/M
3300025918\|Ga0207662_11051952	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	578	Open in IMG/M
3300025928\|Ga0207700_10723820	All Organisms → cellular organisms → Bacteria → Proteobacteria	889	Open in IMG/M
3300025929\|Ga0207664_12015706	Not Available	500	Open in IMG/M
3300026041\|Ga0207639_11042764	Not Available	766	Open in IMG/M
3300026078\|Ga0207702_11584812	All Organisms → cellular organisms → Bacteria	648	Open in IMG/M
3300026317\|Ga0209154_1090318	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1313	Open in IMG/M
3300026551\|Ga0209648_10399534	Not Available	903	Open in IMG/M
3300027854\|Ga0209517_10128598	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1655	Open in IMG/M
3300027869\|Ga0209579_10363858	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Roseomonas → Roseomonas mucosa	783	Open in IMG/M
3300027905\|Ga0209415_10840760	Not Available	633	Open in IMG/M
3300028536\|Ga0137415_10417876	Not Available	1146	Open in IMG/M
3300028708\|Ga0307295_10156615	Not Available	634	Open in IMG/M
3300028712\|Ga0307285_10098434	Not Available	771	Open in IMG/M
3300028824\|Ga0307310_10387381	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	692	Open in IMG/M
3300028906\|Ga0308309_11662833	Not Available	542	Open in IMG/M
3300031234\|Ga0302325_12266237	All Organisms → cellular organisms → Bacteria	658	Open in IMG/M
3300031446\|Ga0170820_15793218	Not Available	534	Open in IMG/M
3300031543\|Ga0318516_10830177	Not Available	521	Open in IMG/M
3300031549\|Ga0318571_10108821	Not Available	916	Open in IMG/M
3300031573\|Ga0310915_10761530	Not Available	682	Open in IMG/M
3300031573\|Ga0310915_10990039	Not Available	587	Open in IMG/M
3300031708\|Ga0310686_113701324	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Roseomonas → Roseomonas mucosa	616	Open in IMG/M
3300031719\|Ga0306917_10046897	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2885	Open in IMG/M
3300031719\|Ga0306917_11437761	Not Available	531	Open in IMG/M
3300031744\|Ga0306918_11178095	All Organisms → cellular organisms → Bacteria	592	Open in IMG/M
3300031744\|Ga0306918_11420678	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	531	Open in IMG/M
3300031768\|Ga0318509_10648576	Not Available	587	Open in IMG/M
3300031771\|Ga0318546_10416050	Not Available	939	Open in IMG/M
3300031777\|Ga0318543_10049937	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1703	Open in IMG/M
3300031821\|Ga0318567_10430604	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	748	Open in IMG/M
3300031833\|Ga0310917_10943317	Not Available	580	Open in IMG/M
3300031833\|Ga0310917_11000461	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	560	Open in IMG/M
3300031879\|Ga0306919_10469244	All Organisms → cellular organisms → Bacteria	969	Open in IMG/M
3300031896\|Ga0318551_10741060	All Organisms → cellular organisms → Bacteria	570	Open in IMG/M
3300031910\|Ga0306923_11978214	Not Available	592	Open in IMG/M
3300031941\|Ga0310912_10107011	All Organisms → cellular organisms → Bacteria	2068	Open in IMG/M
3300031942\|Ga0310916_11622562	Not Available	525	Open in IMG/M
3300031946\|Ga0310910_11334820	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	553	Open in IMG/M
3300031954\|Ga0306926_10154428	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2843	Open in IMG/M
3300032025\|Ga0318507_10178699	Not Available	913	Open in IMG/M
3300032059\|Ga0318533_10047707	Not Available	2843	Open in IMG/M
3300032205\|Ga0307472_101143687	Not Available	740	Open in IMG/M
3300033289\|Ga0310914_10854070	Not Available	809	Open in IMG/M
3300033475\|Ga0310811_11483807	Not Available	507	Open in IMG/M
3300034268\|Ga0372943_1175151	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. CCBAU 51753	513	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	90.20%
Host-Associated	Host-Associated	9.80%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	84.31%
Plants	Host-Associated → Plants	9.80%
Aquatic	Environmental → Aquatic	5.88%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	83.33%
Rhizoplane	Host-Associated → Plants → Rhizoplane	4.90%
Rhizosphere	Host-Associated → Plants → Rhizosphere	3.92%
Freshwater	Environmental → Aquatic → Freshwater	2.94%
Thermal Springs	Environmental → Aquatic → Thermal Springs	1.96%
Sediment	Environmental → Aquatic → Sediment	0.98%
Peat	Environmental → Terrestrial → Peat	0.98%
Roots	Host-Associated → Plants → Roots	0.98%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	71.57%
Loam	Environmental → Terrestrial → Soil → Loam	10.78%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	2.94%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	2.94%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	2.94%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	1.96%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.96%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.98%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.98%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	0.98%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.98%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.98%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	37.25%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	24.51%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	7.84%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	5.88%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	4.90%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	2.94%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	2.94%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	1.96%
Acidic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic	1.96%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.96%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.96%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	0.98%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.98%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	0.98%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	0.98%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.98%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.98%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	20.59%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	14.71%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	8.82%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	6.86%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	5.88%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	2.94%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	2.94%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.94%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	1.96%
Iron-Sulfur Acid Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring	1.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.96%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	1.96%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	1.96%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	1.96%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	1.96%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	1.96%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	0.98%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.98%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.98%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.98%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.98%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.98%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.98%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.98%
Bog	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog	0.98%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.98%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	0.98%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.98%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	0.98%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.98%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	0.98%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere	0.98%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.98%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.98%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.98%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2124908006	Soil microbial communities from sample at FACE Site Metagenome WIR_Oz2	Environmental	Open in IMG/M
3300001867	Texas A ecozone_OM1H0_M2 (Combined assembly for Texas A ecozone Site metagenome samples, ASSEMBLY_DATE=20130705)	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300005160	Soil and rhizosphere microbial communities from Laval, Canada - mgLMB	Environmental	Open in IMG/M
3300005181	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_127	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005446	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_135	Environmental	Open in IMG/M
3300005560	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_119	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006046	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101	Environmental	Open in IMG/M
3300006057	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2012	Environmental	Open in IMG/M
3300006237	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2)	Host-Associated	Open in IMG/M
3300006800	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109	Environmental	Open in IMG/M
3300006806	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100	Environmental	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006893	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG	Environmental	Open in IMG/M
3300006914	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5	Host-Associated	Open in IMG/M
3300009092	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaG	Host-Associated	Open in IMG/M
3300010159	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_3	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012494	Arabidopsis rhizosphere microbial communities from North Carolina - M.Cvi.2.yng.030610	Host-Associated	Open in IMG/M
3300012908	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S089-202R-1	Environmental	Open in IMG/M
3300012924	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300014499	Permafrost microbial communities from Stordalen Mire, Sweden - 612S2S metaG	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300017936	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_1	Environmental	Open in IMG/M
3300017942	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_3	Environmental	Open in IMG/M
3300018034	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_11_10	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021170	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M	Environmental	Open in IMG/M
3300021402	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-O	Environmental	Open in IMG/M
3300022557	Paint Pots_combined assembly	Environmental	Open in IMG/M
3300025893	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025906	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025916	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025918	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025929	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300026041	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026078	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026317	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121 (SPAdes)	Environmental	Open in IMG/M
3300026551	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)	Environmental	Open in IMG/M
3300027854	Peat soil microbial communities from Weissenstadt, Germany - SII-2010 (SPAdes)	Environmental	Open in IMG/M
3300027869	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027905	Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007 (SPAdes)	Environmental	Open in IMG/M
3300028536	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300028708	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_152	Environmental	Open in IMG/M
3300028712	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_139	Environmental	Open in IMG/M
3300028824	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_197	Environmental	Open in IMG/M
3300028906	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)	Environmental	Open in IMG/M
3300031234	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_2	Environmental	Open in IMG/M
3300031446	Fir Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031549	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f24	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031768	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f22	Environmental	Open in IMG/M
3300031771	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19	Environmental	Open in IMG/M
3300031777	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f24	Environmental	Open in IMG/M
3300031821	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f20	Environmental	Open in IMG/M
3300031833	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031896	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f19	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300032025	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f20	Environmental	Open in IMG/M
3300032059	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M
3300033475	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YC	Environmental	Open in IMG/M
3300034268	Forest soil microbial communities from Eldorado National Forest, California, USA - SNFC_MG_FRD_1.2	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
FWIROz_03972670	2124908006	Soil	MAVVLIVEDEEQVRVLAEAIVQELGHETLTAGTAEQA
JGI12627J18819_102141672	3300001867	Forest Soil	MATVLLAEDDDQVRVLAESYLEEQGHEVLSAGTAPGALALLDKT
Ga0062593_1022699251	3300004114	Soil	MAVVLIVEDEEQVRVLAEAIVQELGHETLTAGTAEQALALIEE
Ga0066820_10015481	3300005160	Soil	MAVVLIVEDEEQVRVLAEAIVQELGHETLTAGTAEQALAVIQ
Ga0066678_107254902	3300005181	Soil	MATVLIVEDEDQVRVLAESYLREQGHQTVSAATAEEALAVFEV
Ga0066388_1046879482	3300005332	Tropical Forest Soil	MGTVLIVEDEDQVRVLAESYLREQGHQTVSAATADEALAVFD
Ga0066388_1052603681	3300005332	Tropical Forest Soil	MATILIVEDENQVRVFAESYLRQQGHRTISAASAEEALALI
Ga0070714_1010235392	3300005435	Agricultural Soil	MGAVFRGIPMAIVLLAEDDDQVRVLAESYLEEQGHEVLSAGTAPGALALLDK
Ga0066686_107365502	3300005446	Soil	MAAILVVEDEEQVRVLAESYLREQGHETFSAATREQALAVLD
Ga0066670_107072782	3300005560	Soil	MATVVLVEGDDQVRVLAESYLEEQGHEVLSAGTAAGAL
Ga0066903_1081704941	3300005764	Tropical Forest Soil	MATVLIVEDEDQVRVLAESYLREQGHQTVSAATAEEGLAVFEVVERIDVLF
Ga0066652_1006093914	3300006046	Soil	MAIVLLVEDEERVRVLAQSYLDEQGHEVLSAGTPQGAIALLEKAPHVDVLF
Ga0075026_1006126652	3300006057	Watersheds	MACVLIVEDEDQVRVLADSYLQQQGHKTFSASTIDGALALLDGDQ
Ga0097621_1017751892	3300006237	Miscanthus Rhizosphere	MAVVLIVEDEEQVRVLAEAIVQELGHETLTAGTAEQALAVIQERA
Ga0066660_114236781	3300006800	Soil	MATILIVEDENQVRVFAESYLRRQGHRTISAATVEEALTLIDA
Ga0079220_112378571	3300006806	Agricultural Soil	MAVVLLVEDEEQVRVLAQSYLEEQGHKVLSAGTPRGAIALL
Ga0075433_117005932	3300006852	Populus Rhizosphere	MSLVLIVEDEEALRVLAESIIQHHGYEALSAGTVEQA
Ga0073928_103781971	3300006893	Iron-Sulfur Acid Spring	MAVVLVVEDEDQVRVLAESYLQEHGHQTRSASTVPEALALLDS
Ga0075436_1007711621	3300006914	Populus Rhizosphere	MATILIVEDENQVRVFAESYLRRQGHRTISAATVEEAL
Ga0105250_105390151	3300009092	Switchgrass Rhizosphere	MAVVLIVEDEEQVRVLAEAIVQELGHETLTAGTAEQ
Ga0099796_105288052	3300010159	Vadose Zone Soil	MAVVLIVEDEEQVRVLAEAIIQDLGHETLTAGTAEQALAVVQE
Ga0126370_101020531	3300010358	Tropical Forest Soil	MANILIVEDEDHLRVLTESYLREQGHVTFSAATKEQA
Ga0126376_112428192	3300010359	Tropical Forest Soil	MATVLIVEDEDQVRVLAESYLREQGHQTVSAATAEEGLAVF
Ga0126372_110013942	3300010360	Tropical Forest Soil	MTDMATVLIVEDEDQVRVLAGSYLREQGHQTVSAATAEEALAVFDVVERI
Ga0126372_115451401	3300010360	Tropical Forest Soil	MAVVLVVEDEDQVRVLAESYLEEQGHQVLSAGTPAGAL
Ga0126377_124502182	3300010362	Tropical Forest Soil	MATVLLVEGEDQVRVLAESYLEEQGHEVLSAGTPDGAL
Ga0126379_128153981	3300010366	Tropical Forest Soil	MATVLLVEGDDQVRVLAESYLEEQGHEVLSAGTAPGA
Ga0134125_116655462	3300010371	Terrestrial Soil	MAVLIVEDDEQVRVLAESVLQGEGFATLSAGTVEQAE*
Ga0126381_1032775621	3300010376	Tropical Forest Soil	MAVVLVVEDEDQVRVLAESYLEEQGHRVLSAGTPAGA
Ga0150985_1223707782	3300012212	Avena Fatua Rhizosphere	MATILVAESEEQVRVLAQSYLREQGHETLSAATKEK
Ga0157341_10359262	3300012494	Arabidopsis Rhizosphere	MAVVLIVEDEEQVRVLAEAIIRELGHETLTAGTAEQALP*
Ga0157286_101926451	3300012908	Soil	MAVVLIVEDEEQVRVLAEAIIQDLGHETLTAGTAEQALAIM
Ga0137413_101915171	3300012924	Vadose Zone Soil	MVSILIVEDEEQVRVLAESYLREQGHQTLSAATMDQAL
Ga0126375_105293851	3300012948	Tropical Forest Soil	MAAILVVEDEEQVRVLAESYLREQGHETFSAATKEQALAVLDVT
Ga0126375_114913981	3300012948	Tropical Forest Soil	MATILIVEDEEQVRVLAESYLREQGHQTLSAATKEQALALLETETVD
Ga0164301_102759581	3300012960	Soil	MAVVLIVEDEEQGRVLAEAIVQELGHETLTAGTAEQALAVIQERADVDLL
Ga0182012_103247212	3300014499	Bog	MAVVLVVEDEEQVRVLAESYLQEHGHQTVSAATAEEALAALGVAD
Ga0132258_117182183	3300015371	Arabidopsis Rhizosphere	MTVVLIVEDEEQVRVLAEAIIRELGHETLTAGTAEQAL
Ga0182041_104396411	3300016294	Soil	MATVLLVEGEDQVRVLAESYLEEQGHEVLSAGTPDGALALLEKSPHVDILFTD
Ga0182041_112505681	3300016294	Soil	MAVILLVEDEEQVRILAQSYLEEQGHKVLTAGTPDGAMAILQRTDHVDLL
Ga0182041_117050903	3300016294	Soil	MASVLIVEDEDQVRVLAKSYLREQGHQTVSAATAEEVLAVFE
Ga0182032_100805636	3300016357	Soil	MASVLIVEDEDQVRVLAKSYLREQGHQTVSAATAEEVLAVFEGVERIDVL
Ga0182032_101243003	3300016357	Soil	MAVVLVVEDEEQVRVLAESYLEEQGHQVLSAGTAAGALAILHRSPAV
Ga0182039_103662611	3300016422	Soil	MAVVLIVEDEDQVRVLAESYLEEQGHQVLSAGTPAGALALLHQLPA
Ga0182039_115267391	3300016422	Soil	MATVLLVEGDDHASVLAESYLEEQGHEVLSAGTAPGA
Ga0182038_109057731	3300016445	Soil	MASVLIVEDEDQVRVLAKSYLREQGHQTVSAATAEEVLA
Ga0187821_101293633	3300017936	Freshwater Sediment	MATVLLAEDDDQVRVLAESYLEEQGHEVLSAGTAPGALALLAK
Ga0187808_101025391	3300017942	Freshwater Sediment	MATILLVEEEDQVRLLAESYLEEQGHQVLSAGTPEGAL
Ga0187863_105108283	3300018034	Peatland	MAVILVVEDEEQIRVLVESILVDDGHQTLSAAATAQALAVIQTDHP
Ga0066667_108194042	3300018433	Grasslands Soil	MAVILLVEDEEQVRVLGESYLEEQGHQVLSAGTLQDVMAVLENT
Ga0210406_108465823	3300021168	Soil	MGAVFRGIPMAIVLLAEDDDQVRVLAESYLEEQGHEVLSAGTAPGALALLDKTSE
Ga0210400_114993941	3300021170	Soil	MALVLIVEDEEQVRVLSESYLREQGHRTLSASTTEEALAVLDVADG
Ga0210385_100852151	3300021402	Soil	MAVVLIVEDEEQVRVLAESYLQEHGHQTLSAANAEEALA
Ga0212123_109047041	3300022557	Iron-Sulfur Acid Spring	MAVVMVVEDEDQVRVLAESYLQEHGHQTRSASTVPEALALLDSGKPIDV
Ga0207682_101724442	3300025893	Miscanthus Rhizosphere	MAVVLIVEDEEQVRVLAEAIVQELGHETLTAGTAEQALAV
Ga0207699_114869791	3300025906	Corn, Switchgrass And Miscanthus Rhizosphere	MATVLIVEDEDQVRVLAESYLREQGHQTVSAATAEEALA
Ga0207663_113487762	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	MATILIVEDQRQVRVFAESYLRQQGHRTISAGTPEEALALIE
Ga0207662_110519521	3300025918	Switchgrass Rhizosphere	MAVVLIVEDEEQVRVLAEAIIQDLGHETLTAGTAEQALAIMQERP
Ga0207700_107238201	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	MAIVLLVEGDDQVRVLAESYLEEQGHEVLSAGTAAG
Ga0207664_120157061	3300025929	Agricultural Soil	MATVLIVEDEDQVRVLAESYLREQGHQTVSAATAEEALAVF
Ga0207639_110427641	3300026041	Corn Rhizosphere	MAVVLIVEDEEQVRVLAEAIVQELGHETLTAGTAEQALAVI
Ga0207702_115848121	3300026078	Corn Rhizosphere	MAVVLIVEDEEQVRVLAEAIIQDLGHETLTAGTAEQALAIMQDRP
Ga0209154_10903183	3300026317	Soil	MATVLIVEDEDQVRVLAESYLREQGHQTVSAATAEEALAV
Ga0209648_103995343	3300026551	Grasslands Soil	MAVVLIVEDDEQVRVLAESIIQDTGHETLTAANTDEALA
Ga0209517_101285983	3300027854	Peatlands Soil	MAVVLIVEDKEPVRVLAEWCFQEHGHQTLSASTVDEALAV
Ga0209579_103638581	3300027869	Surface Soil	MAVVLIVEDEEQVRVLAESYLQEQGHQTVSAATADE
Ga0209415_108407602	3300027905	Peatlands Soil	MAVVLIIEDREPVRMLAEWCFQEHGHQTLSASTVDEALAV
Ga0137415_104178762	3300028536	Vadose Zone Soil	MAVVLVVDDEDQVRVLAESILQGMGFQTLSAATVDQALALIRAEPSI
Ga0307295_101566152	3300028708	Soil	MAVVLIVEDEEQVRVLAEAIIQDLGHETLTAGTAEQALAVVQ
Ga0307285_100984341	3300028712	Soil	MAVVLIVEDEEQVRVLAEAIVQELGHETLTAGTAEQTLAV
Ga0307310_103873811	3300028824	Soil	MAVVLIVEDEEQVRVLAEAIIQDLGHETLTAGTAEQALAVVQERPD
Ga0308309_116628331	3300028906	Soil	MAVVLVVEDEDQVRVLAESYLQEQGHRTFSASTVNEALAVLDE
Ga0302325_122662372	3300031234	Palsa	VAVVLIVEDEESLRVLAESIIQDRGHTTLSASTLEQAI
Ga0170820_157932181	3300031446	Forest Soil	MATILVVEDEEQVLVLTESYLREQGHQTVSAATAEQASAILDGTERVDV
Ga0318516_108301771	3300031543	Soil	MATILIVEHEKQVRVFAESYLQRQGHRTISTETSAQALALIEAVDGVDVLFSE
Ga0318571_101088211	3300031549	Soil	MATVLLVEGEDQVRVLAESYLEEQGHEVLSAGTPDGALALLEKSPHVD
Ga0310915_107615301	3300031573	Soil	MAVVLLVEDEEQVRVLAQSYLEEQGHEVLSAGSPNGALALLEK
Ga0310915_109900393	3300031573	Soil	MASVLIVEDEDQVRVLAKSYLREQGHQTVSAATAEEVLAV
Ga0310686_1137013242	3300031708	Soil	MAVVLIVEDEEQVRVLAESYLQEQGHQTVSAATADEALAALEA
Ga0306917_100468973	3300031719	Soil	MATVLLVEDDDQVRVLAESYLEEQGHEVLSAGTASALHDRTQ
Ga0306917_114377611	3300031719	Soil	LARILIVEDEEQVRVLAESYLREQGHETLSAATREQALALLEVAK
Ga0306918_111780952	3300031744	Soil	MGTVLIVEDEDQVRVLAESYLREQGHQTVSAATPEEALAV
Ga0306918_114206782	3300031744	Soil	MATVLLVEDDDQVRVLAESYLEEQGHEVLSAGTAPGALALLAKSSQL
Ga0318509_106485761	3300031768	Soil	MAVVLIVEDEDQVRVLAESYLEEQGHQVLSAGTPAGALALL
Ga0318546_104160501	3300031771	Soil	MATVLLVEGEDQVRVLAESYLEEQGHEVLSAGTPTNSA
Ga0318543_100499371	3300031777	Soil	MATVLLVEDDDQVRVLAESYLEEQGHEVLSAGTAPGALALLAKSSQLEL
Ga0318567_104306041	3300031821	Soil	MATVLLVEDDDQVRVLAESYLEEQGHEVLSAGTASALHDRTQSDRQARF
Ga0310917_109433171	3300031833	Soil	MAVALVVEDEDQVRVLAESYLEVQGHQVLSAGTPAGA
Ga0310917_110004611	3300031833	Soil	MATVLLVEDDDQVRVLAESYLEEQGHEVLSAGTAPGALALL
Ga0306919_104692441	3300031879	Soil	MATVLLVEDDDQVRVLAESYLEEQGHEVLSAGTASA
Ga0318551_107410602	3300031896	Soil	MGTVLIVEDEDQVRVLAESYLREQGHQTVSAATRE
Ga0306923_119782141	3300031910	Soil	MAVALVVEDEDQVRVLAESYLEVQGHQVLSAGTPAARTS
Ga0310912_101070111	3300031941	Soil	LARILIVEDEEQVRVLAESYLREQGHETLSAATREQALALLEI
Ga0310916_116225621	3300031942	Soil	MAVVLVVEDEDQVRVLAESYLEEQGHQVLSAGTPAGALALRVNCRR
Ga0310910_113348202	3300031946	Soil	MATVLLVEEDDQVRVLAESYLEEQGHEVLSAGTAPGALALLAKTSQLE
Ga0306926_101544285	3300031954	Soil	LARILIVEDEEQVRVLAESYLREQGHETLSAATREQALALLEIAKGVDL
Ga0318507_101786993	3300032025	Soil	MAVVLVVEDEEQVRVLAESYLEEQGHQVLSAGTAAGALAI
Ga0318533_100477071	3300032059	Soil	MATVLLVEDDDQVRVLAESYLEEQGHEVLSARTAPGALALLAK
Ga0307472_1011436872	3300032205	Hardwood Forest Soil	MATVLIAEDEDQVRVLAESYLQEQGHQTVSAASIEEGLA
Ga0310914_108540702	3300033289	Soil	LARILIVEDEEQVRVLAESYLREQGHETLSAATREQALALLEVAKGVDLL
Ga0310811_114838071	3300033475	Soil	MAVVLIVEDEEQVRVLAEAIIQDLGHETLTAGTAEQALAIMQ
Ga0372943_1175151_381_512	3300034268	Soil	MAVVLVVEDEEQVRVLADAIIGELGYETLTAGTAEQALALVLER

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F101372

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences