Metagenome Family F101369

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F101369
Family Type	Metagenome
Number of Sequences	102
Average Sequence Length	70 residues
Representative Sequence	VGYELERLFDAVHDLLSSTIHAAGPWAVPGVLVVAGLFALANHDRMISGFGVFLVFATAAVVTLVIAFQTGRV
Number of Associated Samples	91
Number of Associated Scaffolds	102

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	68.00 %
% of genes near scaffold ends (potentially truncated)	44.12 %
% of genes from short scaffolds (< 2000 bps)	82.35 %
Associated GOLD sequencing projects	79
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (60.784 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil (10.784 % of family members)
Environment Ontology (ENVO)	Unclassified (42.157 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (61.765 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 76.71% β-sheet: 0.00% Coil/Unstructured: 23.29%
Feature Viewer

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Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 102 Family Scaffolds
PF02687	FtsX	2.94
PF02705	K_trans	1.96
PF00069	Pkinase	1.96
PF03109	ABC1	1.96
PF15902	Sortilin-Vps10	1.96
PF12833	HTH_18	0.98
PF01906	YbjQ_1	0.98
PF02518	HATPase_c	0.98
PF02896	PEP-utilizers_C	0.98
PF09752	ABHD18	0.98
PF04015	DUF362	0.98
PF01479	S4	0.98
PF00313	CSD	0.98
PF11847	DUF3367	0.98
PF00528	BPD_transp_1	0.98
PF04542	Sigma70_r2	0.98
PF01163	RIO1	0.98
PF05598	DUF772	0.98
PF14076	DUF4258	0.98
PF00488	MutS_V	0.98
PF13091	PLDc_2	0.98
PF00072	Response_reg	0.98

COG ID	Name	Functional Category	% Frequency in 102 Family Scaffolds
COG0515	Serine/threonine protein kinase	Signal transduction mechanisms [T]	7.84
COG0661	Predicted protein kinase regulating ubiquinone biosynthesis, AarF/ABC1/UbiB family	Signal transduction mechanisms [T]	1.96
COG3158	K+ uptake protein Kup	Inorganic ion transport and metabolism [P]	1.96
COG0249	DNA mismatch repair ATPase MutS	Replication, recombination and repair [L]	0.98
COG0393	Uncharacterized pentameric protein YbjQ, UPF0145 family	Function unknown [S]	0.98
COG0568	DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)	Transcription [K]	0.98
COG1191	DNA-directed RNA polymerase specialized sigma subunit	Transcription [K]	0.98
COG1193	dsDNA-specific endonuclease/ATPase MutS2	Replication, recombination and repair [L]	0.98
COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	Transcription [K]	0.98
COG2006	Uncharacterized conserved protein, DUF362 family	Function unknown [S]	0.98
COG4941	Predicted RNA polymerase sigma factor, contains C-terminal TPR domain	Transcription [K]	0.98

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.78 %
All Organisms	root	All Organisms	39.22 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.78 %
cellular organisms	root	All Organisms → cellular organisms	39.22 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.78 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	37.25 %
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	1.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.78 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	18.63 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	2.94 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	1.96 %
Euryarchaeota	phylum	All Organisms → cellular organisms → Archaea → Euryarchaeota	1.96 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.78 %
Gemmatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	18.63 %
Methanopyri	class	All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanopyri	1.96 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	1.96 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.98 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.98 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.78 %
unclassified Gemmatimonadetes	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes	9.80 %
Gemmatimonadetes	class	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes	4.90 %
Methanopyrales	order	All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanopyri → Methanopyrales	1.96 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	1.96 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.98 %
Rhodobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales	0.98 %
unclassified Chloroflexi	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.78 %
Gemmatimonadetes bacterium SCN 70-22	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium SCN 70-22	7.84 %
Gemmatimonadales	order	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales	4.90 %
Methanopyraceae	family	All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanopyri → Methanopyrales → Methanopyraceae	1.96 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1.96 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	1.96 %
Myxococcales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	0.98 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.98 %
Rhodobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.78 %
Gemmatimonadetes bacterium SCN 70-22	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium SCN 70-22	7.84 %
Gemmatimonadaceae	family	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae	4.90 %
Methanopyrus	genus	All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanopyri → Methanopyrales → Methanopyraceae → Methanopyrus	1.96 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1.96 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	1.96 %
Pseudodonghicola	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae → Pseudodonghicola	0.98 %
Myxococcales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	0.98 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.78 %
Gemmatimonadetes bacterium SCN 70-22	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium SCN 70-22	7.84 %
Gemmatirosa	genus	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa	1.96 %
Methanopyrus kandleri	species	All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanopyri → Methanopyrales → Methanopyraceae → Methanopyrus → Methanopyrus kandleri	1.96 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1.96 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	1.96 %
unclassified Gemmatimonadaceae	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → unclassified Gemmatimonadaceae	0.98 %
Pseudodonghicola xiamenensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae → Pseudodonghicola → Pseudodonghicola xiamenensis	0.98 %
Myxococcales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	0.98 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	60.78 %
Gemmatimonadetes bacterium SCN 70-22	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium SCN 70-22	7.84 %
Gemmatirosa kalamazoonesis	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	1.96 %
Methanopyrus kandleri	species	All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanopyri → Methanopyrales → Methanopyraceae → Methanopyrus → Methanopyrus kandleri	1.96 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1.96 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	1.96 %
Gemmatimonadaceae bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → unclassified Gemmatimonadaceae → Gemmatimonadaceae bacterium	0.98 %
Pseudodonghicola xiamenensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae → Pseudodonghicola → Pseudodonghicola xiamenensis	0.98 %
Myxococcales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	0.98 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.98 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2162886012\|MBSR1b_contig_1005281	All Organisms → cellular organisms → Bacteria	939	Open in IMG/M
3300000956\|JGI10216J12902_114474580	Not Available	927	Open in IMG/M
3300004156\|Ga0062589_101050850	Not Available	766	Open in IMG/M
3300004463\|Ga0063356_100641493	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → unclassified Gemmatimonadaceae → Gemmatimonadaceae bacterium	1446	Open in IMG/M
3300004643\|Ga0062591_100555947	Not Available	1002	Open in IMG/M
3300005093\|Ga0062594_100051833	All Organisms → cellular organisms → Bacteria	2107	Open in IMG/M
3300005093\|Ga0062594_100553318	Not Available	992	Open in IMG/M
3300005328\|Ga0070676_10441509	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium SCN 70-22	913	Open in IMG/M
3300005329\|Ga0070683_100344782	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium SCN 70-22	1418	Open in IMG/M
3300005333\|Ga0070677_10086737	Not Available	1353	Open in IMG/M
3300005334\|Ga0068869_100957013	Not Available	743	Open in IMG/M
3300005340\|Ga0070689_100854230	Not Available	803	Open in IMG/M
3300005343\|Ga0070687_101402987	Not Available	522	Open in IMG/M
3300005355\|Ga0070671_100087464	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	2608	Open in IMG/M
3300005367\|Ga0070667_101418525	All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanopyri → Methanopyrales → Methanopyraceae → Methanopyrus → Methanopyrus kandleri	651	Open in IMG/M
3300005406\|Ga0070703_10063001	All Organisms → cellular organisms → Bacteria	1218	Open in IMG/M
3300005438\|Ga0070701_10002187	All Organisms → cellular organisms → Bacteria	7454	Open in IMG/M
3300005441\|Ga0070700_100033111	All Organisms → cellular organisms → Bacteria	3111	Open in IMG/M
3300005441\|Ga0070700_100852195	All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanopyri → Methanopyrales → Methanopyraceae → Methanopyrus → Methanopyrus kandleri	738	Open in IMG/M
3300005457\|Ga0070662_100394653	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	1141	Open in IMG/M
3300005539\|Ga0068853_100419606	Not Available	1254	Open in IMG/M
3300005539\|Ga0068853_102081572	Not Available	550	Open in IMG/M
3300005618\|Ga0068864_100643367	Not Available	1032	Open in IMG/M
3300005718\|Ga0068866_11166980	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium SCN 70-22	554	Open in IMG/M
3300005719\|Ga0068861_101863973	Not Available	598	Open in IMG/M
3300006237\|Ga0097621_102035484	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae	549	Open in IMG/M
3300006358\|Ga0068871_101310677	Not Available	681	Open in IMG/M
3300006844\|Ga0075428_100894931	Not Available	942	Open in IMG/M
3300006845\|Ga0075421_100848244	Not Available	1047	Open in IMG/M
3300006845\|Ga0075421_102475316	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	541	Open in IMG/M
3300006853\|Ga0075420_101541754	Not Available	570	Open in IMG/M
3300006876\|Ga0079217_10290999	Not Available	899	Open in IMG/M
3300006880\|Ga0075429_101144222	Not Available	680	Open in IMG/M
3300006881\|Ga0068865_100071279	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	2464	Open in IMG/M
3300006894\|Ga0079215_10176825	Not Available	1053	Open in IMG/M
3300007004\|Ga0079218_10173064	Not Available	1610	Open in IMG/M
3300007004\|Ga0079218_10772235	Not Available	917	Open in IMG/M
3300007004\|Ga0079218_11176556	Not Available	792	Open in IMG/M
3300007004\|Ga0079218_12616758	Not Available	600	Open in IMG/M
3300009093\|Ga0105240_10858536	Not Available	979	Open in IMG/M
3300009100\|Ga0075418_12464135	Not Available	568	Open in IMG/M
3300009101\|Ga0105247_10221709	Not Available	1280	Open in IMG/M
3300009147\|Ga0114129_10787487	Not Available	1214	Open in IMG/M
3300009177\|Ga0105248_10051724	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	4609	Open in IMG/M
3300009789\|Ga0126307_10242921	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1447	Open in IMG/M
3300009789\|Ga0126307_10403858	Not Available	1102	Open in IMG/M
3300009840\|Ga0126313_10174425	Not Available	1638	Open in IMG/M
3300010036\|Ga0126305_10353695	Not Available	962	Open in IMG/M
3300010037\|Ga0126304_10011870	All Organisms → cellular organisms → Bacteria	4776	Open in IMG/M
3300010037\|Ga0126304_10262262	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis	1139	Open in IMG/M
3300010038\|Ga0126315_10053318	All Organisms → cellular organisms → Bacteria	2203	Open in IMG/M
3300010040\|Ga0126308_10732034	Not Available	682	Open in IMG/M
3300010041\|Ga0126312_11029146	Not Available	603	Open in IMG/M
3300010045\|Ga0126311_10284418	Not Available	1239	Open in IMG/M
3300010166\|Ga0126306_10045104	All Organisms → cellular organisms → Bacteria	3034	Open in IMG/M
3300010375\|Ga0105239_12061905	Not Available	662	Open in IMG/M
3300012212\|Ga0150985_104229611	Not Available	531	Open in IMG/M
3300012495\|Ga0157323_1052149	Not Available	501	Open in IMG/M
3300012519\|Ga0157352_1061535	Not Available	586	Open in IMG/M
3300012907\|Ga0157283_10098706	Not Available	779	Open in IMG/M
3300013306\|Ga0163162_10038104	All Organisms → cellular organisms → Bacteria → Acidobacteria	4798	Open in IMG/M
3300013308\|Ga0157375_13307480	Not Available	537	Open in IMG/M
3300014326\|Ga0157380_10030343	All Organisms → cellular organisms → Bacteria	4140	Open in IMG/M
3300014865\|Ga0180078_1011281	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae → Pseudodonghicola → Pseudodonghicola xiamenensis	1247	Open in IMG/M
3300015373\|Ga0132257_100003980	All Organisms → cellular organisms → Bacteria	13864	Open in IMG/M
3300015374\|Ga0132255_101898050	Not Available	906	Open in IMG/M
3300017792\|Ga0163161_10671111	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium SCN 70-22	861	Open in IMG/M
3300018476\|Ga0190274_10389250	Not Available	1346	Open in IMG/M
3300019356\|Ga0173481_10778041	Not Available	526	Open in IMG/M
3300025885\|Ga0207653_10177532	All Organisms → cellular organisms → Bacteria → Proteobacteria	795	Open in IMG/M
3300025893\|Ga0207682_10014224	All Organisms → cellular organisms → Bacteria	3100	Open in IMG/M
3300025893\|Ga0207682_10519627	Not Available	563	Open in IMG/M
3300025899\|Ga0207642_10859009	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium SCN 70-22	580	Open in IMG/M
3300025904\|Ga0207647_10120351	All Organisms → cellular organisms → Bacteria	1548	Open in IMG/M
3300025908\|Ga0207643_10003791	All Organisms → cellular organisms → Bacteria	8127	Open in IMG/M
3300025925\|Ga0207650_10174650	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium SCN 70-22	1709	Open in IMG/M
3300025930\|Ga0207701_10302386	Not Available	1389	Open in IMG/M
3300025931\|Ga0207644_10184235	Not Available	1638	Open in IMG/M
3300025936\|Ga0207670_11056280	Not Available	685	Open in IMG/M
3300025940\|Ga0207691_11153455	Not Available	643	Open in IMG/M
3300025941\|Ga0207711_10879643	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium SCN 70-22	833	Open in IMG/M
3300025942\|Ga0207689_10645985	Not Available	891	Open in IMG/M
3300025960\|Ga0207651_10082910	All Organisms → cellular organisms → Bacteria → Acidobacteria	2317	Open in IMG/M
3300025986\|Ga0207658_10376719	Not Available	1242	Open in IMG/M
3300026035\|Ga0207703_11413579	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	669	Open in IMG/M
3300026095\|Ga0207676_10592615	Not Available	1064	Open in IMG/M
3300027639\|Ga0209387_1103346	Not Available	701	Open in IMG/M
3300027880\|Ga0209481_10520260	Not Available	615	Open in IMG/M
3300027886\|Ga0209486_10391595	Not Available	841	Open in IMG/M
3300027886\|Ga0209486_10587412	Not Available	704	Open in IMG/M
3300028754\|Ga0307297_10056803	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium SCN 70-22	1218	Open in IMG/M
3300031538\|Ga0310888_10003550	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae	5185	Open in IMG/M
3300031548\|Ga0307408_101626573	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	614	Open in IMG/M
3300031716\|Ga0310813_12230429	Not Available	518	Open in IMG/M
3300031731\|Ga0307405_11192325	Not Available	658	Open in IMG/M
3300031901\|Ga0307406_11869568	Not Available	535	Open in IMG/M
3300031944\|Ga0310884_10168369	Not Available	1145	Open in IMG/M
3300032012\|Ga0310902_11000122	Not Available	580	Open in IMG/M
3300032211\|Ga0310896_10245100	Not Available	904	Open in IMG/M
3300034147\|Ga0364925_0149167	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	849	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Host-Associated	Host-Associated	52.94%
Environmental	Environmental	47.06%

Habitat	Taxonomy	Distribution
Plants	Host-Associated → Plants	52.94%
Terrestrial	Environmental → Terrestrial	46.08%
Aquatic	Environmental → Aquatic	0.98%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	45.10%
Rhizosphere	Host-Associated → Plants → Rhizosphere	30.39%
Rhizoplane	Host-Associated → Plants → Rhizoplane	20.59%
Roots	Host-Associated → Plants → Roots	1.96%
Sediment	Environmental → Aquatic → Sediment	0.98%
Floodplain	Environmental → Terrestrial → Floodplain	0.98%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	35.29%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	18.63%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	16.67%
Soil	Host-Associated → Plants → Rhizosphere → Soil	11.76%
Loam	Environmental → Terrestrial → Soil → Loam	9.80%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	3.92%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	1.96%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.98%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	0.98%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	18.63%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	16.67%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	16.67%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	12.75%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	11.76%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	9.80%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	3.92%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	3.92%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	1.96%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	1.96%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.98%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	0.98%

Habitat	Taxonomy	Distribution
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	10.78%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	8.82%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	7.84%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	5.88%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	5.88%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	5.88%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	4.90%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	4.90%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	3.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	3.92%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	3.92%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	3.92%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	2.94%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	2.94%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	2.94%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.96%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.96%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	1.96%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	1.96%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	0.98%
Unplanted Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Unplanted Soil	0.98%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.98%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Corn, Switchgrass And Miscanthus Rhizosphere	0.98%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.98%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	0.98%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere	0.98%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	0.98%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.98%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere	0.98%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.98%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.98%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.98%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2162886012	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1	Host-Associated	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300004643	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005328	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG	Host-Associated	Open in IMG/M
3300005329	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG	Environmental	Open in IMG/M
3300005333	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG	Host-Associated	Open in IMG/M
3300005334	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2	Host-Associated	Open in IMG/M
3300005340	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG	Environmental	Open in IMG/M
3300005343	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG	Environmental	Open in IMG/M
3300005355	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG	Host-Associated	Open in IMG/M
3300005367	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG	Host-Associated	Open in IMG/M
3300005406	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG	Environmental	Open in IMG/M
3300005438	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaG	Environmental	Open in IMG/M
3300005441	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG	Environmental	Open in IMG/M
3300005457	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG	Host-Associated	Open in IMG/M
3300005539	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2	Host-Associated	Open in IMG/M
3300005618	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2	Host-Associated	Open in IMG/M
3300005718	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2	Host-Associated	Open in IMG/M
3300005719	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2	Host-Associated	Open in IMG/M
3300006237	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2)	Host-Associated	Open in IMG/M
3300006358	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2	Host-Associated	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006853	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD4	Host-Associated	Open in IMG/M
3300006876	Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS200	Environmental	Open in IMG/M
3300006880	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3	Host-Associated	Open in IMG/M
3300006881	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2	Host-Associated	Open in IMG/M
3300006894	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Control	Environmental	Open in IMG/M
3300007004	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost	Environmental	Open in IMG/M
3300009093	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG	Host-Associated	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009101	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG	Host-Associated	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009177	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG	Host-Associated	Open in IMG/M
3300009789	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot28	Environmental	Open in IMG/M
3300009840	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105A	Environmental	Open in IMG/M
3300010036	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot26	Environmental	Open in IMG/M
3300010037	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot25	Environmental	Open in IMG/M
3300010038	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot106	Environmental	Open in IMG/M
3300010040	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot55	Environmental	Open in IMG/M
3300010041	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot104A	Environmental	Open in IMG/M
3300010045	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot61	Environmental	Open in IMG/M
3300010166	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot27	Environmental	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012495	Arabidopsis rhizosphere microbial communities from North Carolina - M.Oy.5.old.040610	Host-Associated	Open in IMG/M
3300012519	Unplanted soil (control) microbial communities from North Carolina - M.Soil.7.yng.070610	Environmental	Open in IMG/M
3300012907	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S044-104R-1	Environmental	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated	Open in IMG/M
3300014326	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG	Host-Associated	Open in IMG/M
3300014865	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT499_16_10D	Environmental	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300017792	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG	Host-Associated	Open in IMG/M
3300018476	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T	Environmental	Open in IMG/M
3300019356	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S073-202C-2 (version 2)	Environmental	Open in IMG/M
3300025885	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025893	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025899	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025904	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes)	Host-Associated	Open in IMG/M
3300025908	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025925	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025930	Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)	Environmental	Open in IMG/M
3300025931	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025936	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes)	Environmental	Open in IMG/M
3300025940	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025941	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025942	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025960	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025986	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026035	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026095	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027639	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Control (SPAdes)	Environmental	Open in IMG/M
3300027880	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3 (SPAdes)	Host-Associated	Open in IMG/M
3300027886	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost (SPAdes)	Environmental	Open in IMG/M
3300028754	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_157	Environmental	Open in IMG/M
3300031538	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D1	Environmental	Open in IMG/M
3300031548	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3	Host-Associated	Open in IMG/M
3300031716	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3	Environmental	Open in IMG/M
3300031731	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1	Host-Associated	Open in IMG/M
3300031901	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2	Host-Associated	Open in IMG/M
3300031903	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1	Host-Associated	Open in IMG/M
3300031944	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D1	Environmental	Open in IMG/M
3300032012	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D3	Environmental	Open in IMG/M
3300032211	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D1	Environmental	Open in IMG/M
3300034147	Sediment microbial communities from East River floodplain, Colorado, United States - 44_j17	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
MBSR1b_0759.00009070	2162886012	Miscanthus Rhizosphere	VAYQLEQLFASLHDFLATTIHAAGPWAVPMVVAVAGLIGLANRDRMMSGFGIFLVFATIAIVAIVFAFQSGRM
JGI10216J12902_1144745801	3300000956	Soil	VAYQLEQLFASLHDFLATTIHAAGPWAVPMVVAVAGLIGLANRDRMMSGFGIFLVFATIAIVAIVFAFL
Ga0062589_1010508503	3300004156	Soil	HAAGPWAVPGVLVVAGLFALANHDRMISGFGVFLVFATAAVVTLVIAFQTGRV*
Ga0063356_1006414932	3300004463	Arabidopsis Thaliana Rhizosphere	MGYELAELFAAVHDFLAAVVRAAGPWAVPGVIAVAGLFAMANHDRLISGYGVFLVFATAAVVTLVIAFQTGRV*
Ga0062591_1005559472	3300004643	Soil	CQCSALPEGTVAYQLEQLFASLHDFLATTIHAAGPWAVPMVVAVAGLIGLANRDRMMSGFGIFLVFATIAIVAIVFAFQSGRM*
Ga0062594_1000518332	3300005093	Soil	VGYELERLFDAVHDLLSSTIHAAGPWAVPGVLVVAGLFALANHDRMISGFGVFLVFATAAVVTLVIAFQTGRV*
Ga0062594_1005533182	3300005093	Soil	VGYQLEQAFAAIHDFLSSTIKAAGPWAVPMVLALAGLTAMANRDRLLSGFGVFLVLATAALVTIVIAFQ
Ga0070676_104415091	3300005328	Miscanthus Rhizosphere	AIHDFLSSTIKAAGPWAVPMVLALAGLTAMANRDRLLSGFGVFLVLATAALVTIVIAFQTGRV*
Ga0070683_1003447821	3300005329	Corn Rhizosphere	VGYQLEQAFAAIHDFLSSTIKAAGPWAVPMVLALAGLTAMANRDRLLSGFGVFLVLATAALVTIVIAFQTGRV*
Ga0070677_100867371	3300005333	Miscanthus Rhizosphere	VGYQLEQAFAAIHDFLSSTIQAAGPWAVPMVLALAGLTAMANRDRLLSGFGVFLVLATAALVTIVIAFQTGRV*
Ga0068869_1009570133	3300005334	Miscanthus Rhizosphere	IVGYELERLFEAVHDLLSSAIQAAGPWAVPGVLVVAGLFALANHDRMISGFGVFLVLATAAVVMLVIAFQTGRV*
Ga0070689_1008542301	3300005340	Switchgrass Rhizosphere	SSTIHAAGPWAVPGVLVVAGLFALANHDRMISGFGVFLVFATAAVVTLVIAFQTGRV*
Ga0070687_1014029872	3300005343	Switchgrass Rhizosphere	VAYQLEQLFASLHDFLATTIHAAGPWAVPMVVAVAGLIGLANRDRMMSGFGIFLVFATIAIVAIVFAFQSGR
Ga0070671_1000874644	3300005355	Switchgrass Rhizosphere	VGYQLEQLFASIHEVLATTIRAAGPWAVPMVVAVSGLIGLANRDRMMSGFGVFLAFATIALVTIVLAFQSGRI*
Ga0070667_1014185251	3300005367	Switchgrass Rhizosphere	VAYQLAQLFASIHDLLAKTIHAAGPWGVPMVVAVSGLIGLANRDRMISGFGVFLVFATIALVTIVFAFQSGRM*
Ga0070703_100630014	3300005406	Corn, Switchgrass And Miscanthus Rhizosphere	LFDAVHDLLSSTIHAAGPWAVPGVLVVAGLFALANHDRMISGFGVFLVFATAAVVTLVIAFQTGRV*
Ga0070701_1000218711	3300005438	Corn, Switchgrass And Miscanthus Rhizosphere	VAYQLEQLFASLHDFLATTIHAAGPWAVPMVVAVAGLIGLANRDRMMSGFGIFLVFATIAIVAIVFAFQSGRM*
Ga0070700_1000331115	3300005441	Corn, Switchgrass And Miscanthus Rhizosphere	VGYELERLFDAVHDLLSSTIHAAGPWAVPGVLVVAGLFALANHDRMISGFGVFLVLATAAVVML
Ga0070700_1008521951	3300005441	Corn, Switchgrass And Miscanthus Rhizosphere	VGYQLEQLFASIHEFLATTIRAAGPWAVPMVVAVSGLIGLANRDRMMSGFGVFLIFATIALVAIVLAFQSGRI*
Ga0070662_1003946531	3300005457	Corn Rhizosphere	VGYELERLFEAVHDLLSSAIQAAGPWAVPGVLVVAGLFALANHDRMISGFGVFLVLATAAVVMLVIAFQTGRV*
Ga0068853_1004196064	3300005539	Corn Rhizosphere	AQLFASIHDLLAKTIHAAGPWAVPMAVAVSGLIGLANRDRMISGFGVFLVFATIALVTIVFAFQSGRM*
Ga0068853_1020815722	3300005539	Corn Rhizosphere	AVLTEDHIVGYELERLFDAVHDLLSSTIHAAGPWAVPGVLVVAGLFALANHDRMISGFGVFLVFATAAVVTLVIAFQTGRV*
Ga0068864_1006433672	3300005618	Switchgrass Rhizosphere	VAYQLAQLFASIHDLLAKTIHAAGPWAVPMVVAVAGLIGLANRDRMMSGFGVLLVLATIALVAIVFAFQSGRM*
Ga0068866_111669802	3300005718	Miscanthus Rhizosphere	IHDFLSSTIQAAGPWAVPMVLALAGLTAMANRDRLLSGFGVFLVLATAALVTIVIAFQTGRV*
Ga0068861_1018639732	3300005719	Switchgrass Rhizosphere	VAYQLAQLFASIHDLLAKTIHAAAPRAVPMVVAVSGLIGLANRDRMISGFGVFLVFATIALVTIVFAFQSGRM*
Ga0097621_1020354841	3300006237	Miscanthus Rhizosphere	FAAIHDFLSSTIQAAGPWAVPMVLALAGLTAMANRDRLLSGFGVFLVLATAALVTIVIAFQTGRV*
Ga0068871_1013106771	3300006358	Miscanthus Rhizosphere	VGYQLEQAFAAIHDFLSSTIKAAGPWAVPMVLALAGLTAMANRDRLLSGFGVFLVLATAALVTIVI
Ga0075428_1008949313	3300006844	Populus Rhizosphere	APFARRTTIVGYELERLFDAVHDLLSSAIHAAGPWAVPGVLVVAGLFALANHDRMISGFGVFLVLATAALVMLVIAFQTGRV*
Ga0075421_1008482441	3300006845	Populus Rhizosphere	VAYQLAQLFASIHDLLAQTIHAAGPWAVPMVVVVSGLIGLANRDRMISGFGVFLVFATIALVTIVFAFQSGRM*
Ga0075421_1024753162	3300006845	Populus Rhizosphere	VGYELERLFDAVHDLLSSAIHAAGPWAVPGVLVVAGLFALANHDRMISGFGVFLVLATAALVMLVIAFQTGRV*
Ga0075420_1015417542	3300006853	Populus Rhizosphere	IVGYELERLFDAVHDLLSSAIHAAGPWAVPGVLVVAGLFALANHDRMISGYGVFLVLATAALVMLVIAFQTGRV*
Ga0079217_102909992	3300006876	Agricultural Soil	MGYQLPEAFKSLHALLASAIHRAGPWAIPMVIAVAGLIALANRDRLISGFGVFLVFATAGAVTVVIAFQTGRF*
Ga0075429_1011442223	3300006880	Populus Rhizosphere	ARRTTIVGYELERLFDAVHDLLSSAIHAAGPWAVPGVLVVAGLFALANHDRMISGFGVFLVLATAALVMLVIAFQTGRV*
Ga0068865_1000712791	3300006881	Miscanthus Rhizosphere	KTIHAAAPWAVPMVVAVSGLIGLANRDRMISGFGVFLVFATIALVTIVFAFQSGRM*
Ga0079215_101768252	3300006894	Agricultural Soil	MGYQLAESFKSLHAFLASAIHRAGPWAIPMVIAAAGLIALANRDRLISGFGVFLVFATAGAVTVVIAFQTGRF*
Ga0079218_101730644	3300007004	Agricultural Soil	FKSLHAFLASAIHRAGPWAIPMVIAVAGLIALANRDRLISGFGVFLVFATAGAVTVVIAFQTGRF*
Ga0079218_107722351	3300007004	Agricultural Soil	MGYEFSKLFGAVHDFLASLIRSAGPWAIPGVIAIAVLVAMVNHDRLISGYGVFLVFATAAVVALVIAFQTGRV*
Ga0079218_111765562	3300007004	Agricultural Soil	VGYEIERLFDAVYDLLSSAIRAAGPWAVPGVLVVAGLFALANHDRMISGYGVFLVLATAAVVVLVIAFQTGRV*
Ga0079218_126167581	3300007004	Agricultural Soil	VSLEGIFAAVHDFLSSTIRAAGPWAVPMVVATAGLVAMANRSRLVSGFGVLLTLITIGCIAVVIAFQRGRI*
Ga0105240_108585361	3300009093	Corn Rhizosphere	QLFASLHDFLATTIHAAGPWAVPMVVAVAGLIGLANRDRMMSGFGIFLVFATIAIVAIVFAFQSGRM*
Ga0075418_124641351	3300009100	Populus Rhizosphere	VAYQLAQLFASIHDLLAQTIHAAGPWAVPMVVVVSGLIGLANRDRMISGFGVFLVFATIALVTIVFAFQNGRI*
Ga0105247_102217091	3300009101	Switchgrass Rhizosphere	VAYQLAQLFASIHDLLAKTIHAAGPWAVPMVVAVSGLIGLANRDRMISGFGVFLVFATIALVTIVFAFQSGRM
Ga0114129_107874873	3300009147	Populus Rhizosphere	VAYQLAQLFASIHDLLAQTIHAAGPWAVPMVVVVSGLIGLANRDRMISGFSVFLVFATIALVTIVFAFQSGRM*
Ga0105248_100517241	3300009177	Switchgrass Rhizosphere	VAYQLAQLFASIHDLLAKTIHAAAPWAVPMVVAVSGLIGLANRDRMISGFGVFLVFATIALVTIVFAFQSGRM*
Ga0126307_102429212	3300009789	Serpentine Soil	VGYELERLFAAVHDLLSSAIRAAGPWAVPGVLVVAGLFALANHDRMISGFGVFLVFATAAIVTLVIAFQTGRV*
Ga0126307_104038582	3300009789	Serpentine Soil	MGYKLQQAFAALHDFLSSTIHSAGPWAVPAVIAVAVLIGLGNQNRLVSGFGVFLVLATAALVTLVIAFQTGRV*
Ga0126313_101744252	3300009840	Serpentine Soil	MGYKLEQAFAALHDFLSSTIHSAGPWAVPAVIAAAVLIGLGNHHRLISGFGVFLVLATAALVTLVIAFQTGRV*
Ga0126305_103536952	3300010036	Serpentine Soil	MGYKLQQAFAALHDFLSSTIHSAGPWAVPAVIAVAVLIGLGNHHRLISGFGVFLVLATAALVTLVIAFQTGRV*
Ga0126304_100118701	3300010037	Serpentine Soil	HDFLSSTIHSAGPWAVPAVIAVAVLIGLWNHDRLISGFGVFLVLATAALVTLVIAFQTGRV*
Ga0126304_102622623	3300010037	Serpentine Soil	MGYKLEQAFAALHDFLSSTIDSAGPWAVPAVIAVAVLIGLGNHDRLISGFGVFLVLATAALVTLVIAFQ
Ga0126315_100533184	3300010038	Serpentine Soil	VGYELERLFAAVHDLLSSAIRAAGPWAVPGVLVVAGLFALANHDRMMSGFGVFLVFATAAVVTLVIAFQTGRV*
Ga0126308_107320342	3300010040	Serpentine Soil	VGYELERLFDAVHDLLSSAIHAAGPWAVPGVLVVAGLFALANHDRMMSGFGVFLVFATAAVVTLVIAFQTGRV*
Ga0126312_110291461	3300010041	Serpentine Soil	MGYKLEQAFAALHDFLSSTIHSAGPWAVPAVIAAAVLIGLGNHHRLISGFGVFLVLAT
Ga0126311_102844183	3300010045	Serpentine Soil	MGYKLEQAFAALHDFLSSTIHSAGPWAVPAVIAVAVLIGLGNHDRLVSGFGVFLVLATAALVTLVIAFQTGRV*
Ga0126306_100451046	3300010166	Serpentine Soil	MGYKLEQAFAALHDFLSSTIHSAGPWAVPAVIAVAVLIGLWNHDRLISGFGVFLVLATAALVTLVIAFQTGRV*
Ga0105239_120619052	3300010375	Corn Rhizosphere	VAYQLEQLFASLHDFLATTIHAAGPWAVPMVVAVAGLIGLANRDRMMSGFGIFLVFATIAIVAIV
Ga0150985_1042296111	3300012212	Avena Fatua Rhizosphere	VGYQLEQAFAAVHDFLSSTIQAAGPWAVPMVLALAGLTAMANRDRLLSGFGVFLVLATAALVTIVIAFQTGRV*
Ga0157323_10521491	3300012495	Arabidopsis Rhizosphere	ASIHDLLAKTIHAAGPWGVPMVVAVSGLIGLANRDRMIPGFGVFLVFATIALVTIVFAFQSGRM*
Ga0157352_10615352	3300012519	Unplanted Soil	VAYQLAQLFASIHDLLAKTIHAAGPWGVPMVVAVSGLIGLANRDRMIPGFGVFLVFATIALVTIVFAFQSGRM*
Ga0157283_100987061	3300012907	Soil	VGYQLEQAFAAIHDFLSSTIKAAGPWAVPMVLALAGLTAMANRDRLLSGFGVFLVLATAA
Ga0163162_100381045	3300013306	Switchgrass Rhizosphere	VGYELERLFDAVHDLLSSTIHAAGPWAVPGVLVVAGLFALANHDRMISGSGVFLVFATAAVVTLVIAFQTGRV*
Ga0157375_133074801	3300013308	Miscanthus Rhizosphere	VAYQLAQLFASIHDMLAKTIHAAGPWAVPMVVAVSGLIGLANRDRMISGFGVFLVFATIALVTIVFAFQSGRM*
Ga0157380_100303434	3300014326	Switchgrass Rhizosphere	VAYQLEQLFASLHDFLATTIHAAGPWAVPIVVAVAGLIGLANRDRMMSGFGIFLVFATIAIVAIVFAFQSGRM*
Ga0180078_10112811	3300014865	Soil	AFASVHDFLATSIRAAGPWAIPAVIAVAALVALANHDRLISGFGVFLVLATAAAVTLVIAFQTGRV*
Ga0132257_10000398016	3300015373	Arabidopsis Rhizosphere	VAYQLAQLFASIHDLLAKTIHAAGPWAVPMVVAVSGLIGLANRDRMISGFGVFLVFATIALVTIVFAFQSGRM*
Ga0132255_1018980501	3300015374	Arabidopsis Rhizosphere	VGYQLEQAFAAIHDFLSSTIQAAGPWAVPMVLALAGLTAMANRDRLLSGFGVFLVLAPAALVTIVIAFQTGRV*
Ga0163161_106711112	3300017792	Switchgrass Rhizosphere	VGYQLEQAFAAIHDFLSSTIKAAGPWAVPMVLALAGLTAMANRDRLLSGFGVFLVLATAALVTIVIAFQTGRV
Ga0190274_103892502	3300018476	Soil	VGYELERLFEAVHDLLSSAIRAAGPWAVPGVLVVAGLFALANHDRMISGFGVFLVLATAAVVTLVIAFQTGRV
Ga0173481_107780411	3300019356	Soil	VGYELERLFEAVHNLLSSAIQAAGPWAVPGVLVVAGLFALANHDRMISGFGVFLVLATAAVVMLVIAFQTGRV
Ga0207653_101775321	3300025885	Corn, Switchgrass And Miscanthus Rhizosphere	IHAAGPWAVPGVLVVAGLFALANHDRMISGFGVFLVFATAAVVTLVIAFQTGRV
Ga0207682_100142244	3300025893	Miscanthus Rhizosphere	VGYELERLFEAVHDLLSSAIQAAGPWAVPGVLVVAGLFALANHDRMISGFGVFLVLATAAVVMLVIAFQTGRI
Ga0207682_105196271	3300025893	Miscanthus Rhizosphere	VGYQLEQAFAAIHDFLSSTIQAAGPWAVPMVLALAGLTAMANRDRLLSGFGVFLVLATAALVTIVIAFQTGRV
Ga0207642_108590092	3300025899	Miscanthus Rhizosphere	TIQAAGPWAVPMVLALAGLTAMANRDRLLSGFGVFLVLATAALVTIVIAFQTGRV
Ga0207647_101203512	3300025904	Corn Rhizosphere	VAYQLEQLFASLHDFLATTIHAAGPCAVPMVVAVAGLIGLANRDRMMSGFGIFLVFATIAIVAIVFAFQSGRM
Ga0207643_100037918	3300025908	Miscanthus Rhizosphere	VGYELERLFDAVHDLLSSTIHAAGPWAVPGVLVVAGLFALANHDRMISGFGVFLVFATAAVVTLVIAFQTGRV
Ga0207646_116342152	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	VGDQFSQVFGDIYNFLATTIRAAGPWAIPMVLATAGLIGMANRDRLVSGFGVLLVFFTVGLIAVVIAFQTGRL
Ga0207650_101746501	3300025925	Switchgrass Rhizosphere	SCPEGPTVGYQLEQAFAAIHDFLSSTIKAAGPWAVPMVLALAGLTAMANRDRLLSGFGVFLVLATAALVTIVIAFQTGRV
Ga0207701_103023862	3300025930	Corn, Switchgrass And Miscanthus Rhizosphere	VGYELERLFDAVHDLLSSTIHAAGPWAVPGVLVVAGLFALANHDRMISGFGVFLVLATAAVVTLVIAFQTGRV
Ga0207644_101842354	3300025931	Switchgrass Rhizosphere	VGYQLEQLFASIHEVLATTIRAAGPWAVPMVVAVSGLIGLANRDRMMSGFGVFLAFATIALVTIVLAFQSGRI
Ga0207670_110562802	3300025936	Switchgrass Rhizosphere	SSTIHAAGPWAVPGVLVVAGLFALANHDRMISGFGVFLVFATAAVVTLVIAFQTGRV
Ga0207691_111534552	3300025940	Miscanthus Rhizosphere	HDLLSSTIHAAGPWVVPGVLVVAGLFALANHDRMISGFGVFLVFATAAVVTLVIAFQTGR
Ga0207711_108796432	3300025941	Switchgrass Rhizosphere	PTVGYQLEQAFAAIHDFLSSTIKAAGPWAVPMVLALAGLTAMANRDRLLSGFGVFLVLATAALVTIVIAFQTGRV
Ga0207689_106459851	3300025942	Miscanthus Rhizosphere	QPRAVRIECAVLTEDRIVGYELERLFEAVHDLLSSAIQAAGPWAVPGVLVVAGLFALANHDRMISGFGVFLVLATAAVVTLVIAFQTGRV
Ga0207651_100829101	3300025960	Switchgrass Rhizosphere	RASLCAVLTEDHIVGYELERLLDAVHDLLSSAIQAAGPWAVPGVLVVAGLFALANHDRMISGFGVFLVLATAAVVTLVIAFQTGRV
Ga0207658_103767193	3300025986	Switchgrass Rhizosphere	VAYQLAQLFASIHDLLAKTIHAAGPWGVPMVVAVSGLIGLANRDRMISGFGVFLVFATIALVTIVFAFQSGRM
Ga0207703_114135791	3300026035	Switchgrass Rhizosphere	VGYELERLFDAVHDLLSSTIHAAGPWAVPGVLVVAGLFALANHDRMISGFGVFLVFATAA
Ga0207676_105926152	3300026095	Switchgrass Rhizosphere	VAYQLAQLFASIHDLLAKTIHAAGPWAVPMVVAVAGLIGLANRDRIMSGFGIFLVFATIAIVAIVFAFQSGRM
Ga0209387_11033462	3300027639	Agricultural Soil	MGYQLAESFKSLHAFLASAIHRAGPWAIPMVIAAAGLIALANRDRLISGFGVFLVFATAGAVTVVIAFQTGRF
Ga0209481_105202601	3300027880	Populus Rhizosphere	VGYELERLFDAVHDLLSSAIHAAGPWAVPGVLVVAGLFALANHDRMISGFGVFLVLATAALVMLVIAFQTGRV
Ga0209486_103915952	3300027886	Agricultural Soil	MGYQLPEAFKSLHAFLASAIHRAGPWAIPMVIAVAGLIALANRDRLISGFGVFLVFATAGAVTVVIAFQTGRF
Ga0209486_105874121	3300027886	Agricultural Soil	MGYEFSKLFGAVHDFLASLIRSAGPWAIPGVIAIAVLVAMVNHDRLISGYGVFLVFATAAVVALVIAFQTGRV
Ga0307297_100568032	3300028754	Soil	IQAAGPWAVPMVLALAGLTAMANRDRLLSGFGVFLVLATAALVTIVIAFQTGRV
Ga0310888_100035506	3300031538	Soil	VGYELERLFDAVHDLLSSTIHAAGPWAVPGVLVVAGLFALANHDRMISGFGVFLVFATAAVVTLVI
Ga0307408_1016265732	3300031548	Rhizosphere	VGYELERLFDAVHDLLSSAIHAAGPWAVPGVLVVAGLFALANHDRMMSGFGVFLVFATAAVVTLVIAFQTGRV
Ga0310813_122304291	3300031716	Soil	VAYQLEQLFASLHDFLATTIHAAGPWAVPMVVAVAGLIGLANRDRMMSGFGIFLVFATIAIVAIVFAFQSG
Ga0307405_111923251	3300031731	Rhizosphere	MGYELAELFAAVHDFLAAVVRAAGPWAVPGVIAVAGLFAMANHDRLISGYGVFLVFATAAVVTLVIAFQTGRV
Ga0307406_118695681	3300031901	Rhizosphere	MGYELAELFAAVHDFLAAVVRAAGPWAVPGVIAVAGLFAMANHDRLISGYGVFLVFATAAVVALVIAFQTGRV
Ga0307407_100963444	3300031903	Rhizosphere	VSLEGIFTAVHDFLSSTIRAAGPWAVPMVVATAGLVAMANRSRLVSGFGVLLTLITIGCIAVVIAFQRGRI
Ga0310884_101683694	3300031944	Soil	AAGPWGVPMVVAVSGLIGLANRDRMISGFGVFLVFATIALVTIVFAFQSGRM
Ga0310902_110001221	3300032012	Soil	LSSTIHAAGPWAVPGVLVVAGLFALANHDRMISGFGVFLVFATAAVVTLVIAFQTGRV
Ga0310896_102451001	3300032211	Soil	HDLLAKTIHAAGPWGVPMVVAVSGLIGLANRDRMISGFGVFLVFATIALVTIVFAFQSGR
Ga0364925_0149167_2_217	3300034147	Sediment	YTLDKAFASVHDFLATSIRAAGPWAIPAVIAVAALVALANHDRMISGFGVFLVLATAAAVTLVIAFQTGRV

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F101369

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences