NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome Family F101308

Metagenome Family F101308

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F101308
Family Type Metagenome
Number of Sequences 102
Average Sequence Length 52 residues
Representative Sequence VIGIEKSGSKPNNDQSQKDENIDNIKCSPXAKLTISINPKIKLKPAAINA
Number of Associated Samples 93
Number of Associated Scaffolds 102

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 7.84 %
% of genes near scaffold ends (potentially truncated) 86.27 %
% of genes from short scaffolds (< 2000 bps) 99.02 %
Associated GOLD sequencing projects 93
AlphaFold2 3D model prediction Yes
3D model pTM-score0.14

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (98.039 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine
(21.569 % of family members)
Environment Ontology (ENVO) Unclassified
(61.765 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Saline → Water (saline)
(80.392 % of family members)



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Multiple Sequence Alignments

Select alignment to view:      


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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 3.85%    β-sheet: 0.00%    Coil/Unstructured: 96.15%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.14
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 102 Family Scaffolds
PF13458Peripla_BP_6 85.29
PF02548Pantoate_transf 0.98

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 102 Family Scaffolds
COG0413Ketopantoate hydroxymethyltransferaseCoenzyme transport and metabolism [H] 0.98


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A98.04 %
All OrganismsrootAll Organisms1.96 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300000254|SI34jun09_100mDRAFT_1032701Not Available995Open in IMG/M
3300005239|Ga0073579_1416519Not Available756Open in IMG/M
3300005522|Ga0066861_10135606Not Available852Open in IMG/M
3300005951|Ga0066379_10038990Not Available1399Open in IMG/M
3300006329|Ga0068486_1459165Not Available658Open in IMG/M
3300006331|Ga0068488_1434975Not Available597Open in IMG/M
3300006902|Ga0066372_10479792Not Available728Open in IMG/M
3300007513|Ga0105019_1277473Not Available713Open in IMG/M
3300017739|Ga0181433_1084435Not Available780Open in IMG/M
3300017755|Ga0181411_1167430Not Available627Open in IMG/M
3300017779|Ga0181395_1110047Not Available880Open in IMG/M
3300017779|Ga0181395_1153590Not Available725Open in IMG/M
3300017782|Ga0181380_1100198Not Available1005Open in IMG/M
3300017782|Ga0181380_1226064Not Available624Open in IMG/M
3300017956|Ga0181580_11042749Not Available504Open in IMG/M
3300017962|Ga0181581_10553380Not Available705Open in IMG/M
3300017967|Ga0181590_10391933Not Available988Open in IMG/M
3300018036|Ga0181600_10262415Not Available886Open in IMG/M
3300018041|Ga0181601_10509565Not Available626Open in IMG/M
3300018421|Ga0181592_10150604Not Available1774Open in IMG/M
3300018428|Ga0181568_11286901Not Available546Open in IMG/M
3300018790|Ga0187842_1032166Not Available1694Open in IMG/M
3300019459|Ga0181562_10286827Not Available824Open in IMG/M
3300020177|Ga0181596_10184973Not Available925Open in IMG/M
3300020182|Ga0206129_10089852Not Available1661Open in IMG/M
3300020189|Ga0181578_10082080Not Available1874Open in IMG/M
3300020262|Ga0211537_1054382Not Available727Open in IMG/M
3300020297|Ga0211490_1051119Not Available725Open in IMG/M
3300020330|Ga0211572_1120478Not Available592Open in IMG/M
3300020343|Ga0211626_1045595Not Available1129Open in IMG/M
3300020361|Ga0211531_1080313Not Available895Open in IMG/M
3300020361|Ga0211531_1096789Not Available800Open in IMG/M
3300020373|Ga0211660_10216575Not Available656Open in IMG/M
3300020388|Ga0211678_10270091Not Available698Open in IMG/M
3300020392|Ga0211666_10060549Not Available1594Open in IMG/M
3300020399|Ga0211623_10036343Not Available1673Open in IMG/M
3300020404|Ga0211659_10323057Not Available677Open in IMG/M
3300020416|Ga0211644_10018012All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter ubique2891Open in IMG/M
3300020416|Ga0211644_10038157Not Available1948Open in IMG/M
3300020418|Ga0211557_10116985Not Available1303Open in IMG/M
3300020432|Ga0211556_10065702Not Available1770Open in IMG/M
3300020439|Ga0211558_10292613Not Available764Open in IMG/M
3300020449|Ga0211642_10258617Not Available750Open in IMG/M
3300020459|Ga0211514_10142999Not Available1187Open in IMG/M
3300020459|Ga0211514_10163506Not Available1102Open in IMG/M
3300020460|Ga0211486_10172200Not Available951Open in IMG/M
3300020462|Ga0211546_10211681Not Available963Open in IMG/M
3300020466|Ga0211714_10098042Not Available1452Open in IMG/M
3300020484|Ga0208049_106388Not Available930Open in IMG/M
3300021085|Ga0206677_10255811Not Available720Open in IMG/M
3300021087|Ga0206683_10381458Not Available707Open in IMG/M
3300021089|Ga0206679_10249461Not Available977Open in IMG/M
3300021379|Ga0213864_10070337Not Available1701Open in IMG/M
3300021442|Ga0206685_10226728Not Available631Open in IMG/M
(restricted) 3300022933|Ga0233427_10279414Not Available706Open in IMG/M
3300023175|Ga0255777_10386696Not Available759Open in IMG/M
3300024185|Ga0228669_1049143Not Available868Open in IMG/M
3300024235|Ga0228665_1029698Not Available1120Open in IMG/M
3300024242|Ga0228673_1075899Not Available597Open in IMG/M
3300024247|Ga0228675_1032384Not Available1190Open in IMG/M
3300024266|Ga0228661_1033891Not Available931Open in IMG/M
3300024267|Ga0228623_1049215Not Available828Open in IMG/M
3300024293|Ga0228651_1048430Not Available1022Open in IMG/M
3300024314|Ga0228657_1055167Not Available849Open in IMG/M
3300024413|Ga0233393_1060516Not Available878Open in IMG/M
3300024417|Ga0228650_1158357Not Available585Open in IMG/M
3300024420|Ga0228632_1039184Not Available1106Open in IMG/M
3300025513|Ga0208413_1044168Not Available1427Open in IMG/M
3300025672|Ga0209663_1045539Not Available1484Open in IMG/M
3300025806|Ga0208545_1096439Not Available781Open in IMG/M
3300025870|Ga0209666_1183925Not Available914Open in IMG/M
3300025886|Ga0209632_10546527Not Available520Open in IMG/M
3300026085|Ga0208880_1018506Not Available1476Open in IMG/M
3300026138|Ga0209951_1114698Not Available548Open in IMG/M
3300026254|Ga0208522_1079143Not Available939Open in IMG/M
3300026270|Ga0207993_1049653Not Available1200Open in IMG/M
3300027062|Ga0208959_1051782Not Available539Open in IMG/M
3300027081|Ga0208954_1009028Not Available1427Open in IMG/M
3300027243|Ga0208174_1006325Not Available1473Open in IMG/M
3300027255|Ga0208681_1053287Not Available726Open in IMG/M
3300027553|Ga0208947_1029085Not Available1444Open in IMG/M
3300027553|Ga0208947_1039687Not Available1182Open in IMG/M
3300027572|Ga0208964_1031942Not Available1306Open in IMG/M
(restricted) 3300027730|Ga0247833_1092709Not Available1369Open in IMG/M
3300028131|Ga0228642_1138441Not Available587Open in IMG/M
3300028397|Ga0228639_1050625Not Available1175Open in IMG/M
3300028414|Ga0228627_1066813Not Available912Open in IMG/M
3300028488|Ga0257113_1065366Not Available1153Open in IMG/M
3300031630|Ga0308004_10264012Not Available677Open in IMG/M
3300031644|Ga0308001_10266235Not Available656Open in IMG/M
3300031757|Ga0315328_10479611Not Available717Open in IMG/M
3300031786|Ga0315908_10477136Not Available1042Open in IMG/M
3300031801|Ga0310121_10123062Not Available1639Open in IMG/M
3300031851|Ga0315320_10577818Not Available742Open in IMG/M
3300031851|Ga0315320_10679345Not Available664Open in IMG/M
3300032006|Ga0310344_10158721All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → Candidatus Pelagibacter ubique1913Open in IMG/M
3300032011|Ga0315316_10338758Not Available1261Open in IMG/M
3300032011|Ga0315316_11513336Not Available527Open in IMG/M
3300032073|Ga0315315_10271846Not Available1580Open in IMG/M
3300032088|Ga0315321_10524965Not Available713Open in IMG/M
3300032088|Ga0315321_10784048Not Available543Open in IMG/M
3300032278|Ga0310345_12446913Not Available504Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
MarineEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Marine21.57%
SeawaterEnvironmental → Aquatic → Marine → Coastal → Unclassified → Seawater14.71%
SeawaterEnvironmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater11.76%
Salt MarshEnvironmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh10.78%
MarineEnvironmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine7.84%
MarineEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine5.88%
SeawaterEnvironmental → Aquatic → Marine → Strait → Unclassified → Seawater5.88%
MarineEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine2.94%
SeawaterEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Seawater1.96%
MarineEnvironmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine1.96%
EstuarineEnvironmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine1.96%
MarineEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Marine1.96%
FreshwaterEnvironmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater0.98%
FreshwaterEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater0.98%
FreshwaterEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater0.98%
FreshwaterEnvironmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater0.98%
SeawaterEnvironmental → Aquatic → Marine → Inlet → Unclassified → Seawater0.98%
MarineEnvironmental → Aquatic → Marine → Coastal → Unclassified → Marine0.98%
AqueousEnvironmental → Aquatic → Marine → Coastal → Unclassified → Aqueous0.98%
SeawaterEnvironmental → Aquatic → Marine → Pelagic → Unclassified → Seawater0.98%
Pelagic MarineEnvironmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine0.98%
Saline LakeEnvironmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake0.98%
Pond WaterEnvironmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Pond Water0.98%

Visualization
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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OIDSample NameHabitat TypeIMG/M Link
3300000254Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - 34 06/16/09 100mEnvironmentalOpen in IMG/M
3300005239Environmental Genome Shotgun Sequencing: Ocean Microbial Populations from the Gulf of MaineEnvironmentalOpen in IMG/M
3300005522Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP2014F10-02SV257EnvironmentalOpen in IMG/M
3300005951Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S23_td_250_ad_251m_LV_AEnvironmentalOpen in IMG/M
3300006329Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT233_1_0500mEnvironmentalOpen in IMG/M
3300006331Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT233_1_1000mEnvironmentalOpen in IMG/M
3300006902Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S15_td_250_ad_251m_LV_AEnvironmentalOpen in IMG/M
3300007513Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 237m, 250-2.7um, replicate bEnvironmentalOpen in IMG/M
3300017739Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 56 SPOT_SRF_2014-09-10EnvironmentalOpen in IMG/M
3300017755Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 34 SPOT_SRF_2012-07-09EnvironmentalOpen in IMG/M
3300017779Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 18 SPOT_SRF_2010-12-16EnvironmentalOpen in IMG/M
3300017782Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 3 SPOT_SRF_2009-08-19EnvironmentalOpen in IMG/M
3300017956Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071403BT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300017962Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071404AT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300017967Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071411BT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300018036Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041406US metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300018041Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041407BS metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300018421Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071412BT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300018428Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101404AT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300018790Oligotrophic lake water microbial communities from Sparkling Lake, Wisconsin, USA - SP09_SKY_41EnvironmentalOpen in IMG/M
3300019459Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011511BT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300020177Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041402US metaG (spades assembly)EnvironmentalOpen in IMG/M
3300020182Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160502_2EnvironmentalOpen in IMG/M
3300020189Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071401CT metaG (spades assembly)EnvironmentalOpen in IMG/M
3300020262Marine microbial communities from Tara Oceans - TARA_B100000097 (ERX556100-ERR599172)EnvironmentalOpen in IMG/M
3300020297Marine microbial communities from Tara Oceans - TARA_B000000437 (ERX555970-ERR598979)EnvironmentalOpen in IMG/M
3300020330Marine microbial communities from Tara Oceans - TARA_B100001964 (ERX556097-ERR599147)EnvironmentalOpen in IMG/M
3300020343Marine microbial communities from Tara Oceans - TARA_B100000475 (ERX555975-ERR599174)EnvironmentalOpen in IMG/M
3300020361Marine microbial communities from Tara Oceans - TARA_B100000071 (ERX556078-ERR599167)EnvironmentalOpen in IMG/M
3300020373Marine microbial communities from Tara Oceans - TARA_B100000959 (ERX555949-ERR598946)EnvironmentalOpen in IMG/M
3300020388Marine microbial communities from Tara Oceans - TARA_B100001063 (ERX555965-ERR599064)EnvironmentalOpen in IMG/M
3300020392Marine microbial communities from Tara Oceans - TARA_B100000963 (ERX555916-ERR599163)EnvironmentalOpen in IMG/M
3300020399Marine microbial communities from Tara Oceans - TARA_B100000470 (ERX555969-ERR598947)EnvironmentalOpen in IMG/M
3300020404Marine microbial communities from Tara Oceans - TARA_B100000900 (ERX555954-ERR598978)EnvironmentalOpen in IMG/M
3300020416Marine microbial communities from Tara Oceans - TARA_B100001109 (ERX556137-ERR599039)EnvironmentalOpen in IMG/M
3300020418Marine microbial communities from Tara Oceans - TARA_B100002051 (ERX556028-ERR599136)EnvironmentalOpen in IMG/M
3300020432Marine microbial communities from Tara Oceans - TARA_B100002052 (ERX556103-ERR599100)EnvironmentalOpen in IMG/M
3300020439Marine microbial communities from Tara Oceans - TARA_B100001939 (ERX556062-ERR599029)EnvironmentalOpen in IMG/M
3300020449Marine microbial communities from Tara Oceans - TARA_B100001079 (ERX556008-ERR599020)EnvironmentalOpen in IMG/M
3300020459Marine microbial communities from Tara Oceans - TARA_X000000368 (ERX555913-ERR599095)EnvironmentalOpen in IMG/M
3300020460Marine microbial communities from Tara Oceans - TARA_A100001037 (ERX555931-ERR599097)EnvironmentalOpen in IMG/M
3300020462Marine microbial communities from Tara Oceans - TARA_B100001559 (ERX556040-ERR598986)EnvironmentalOpen in IMG/M
3300020466Marine microbial communities from Tara Oceans - TARA_B100001540 (ERX556059-ERR598968)EnvironmentalOpen in IMG/M
3300020484Freshwater microbial communities from Lake Mendota, WI - 8OCT2008 deep hole epilimnion (SPAdes)EnvironmentalOpen in IMG/M
3300021085Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 30m 12015EnvironmentalOpen in IMG/M
3300021087Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M2 80m 12015EnvironmentalOpen in IMG/M
3300021089Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 100m 12015EnvironmentalOpen in IMG/M
3300021379Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO247EnvironmentalOpen in IMG/M
3300021442Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M2 200m 12015EnvironmentalOpen in IMG/M
3300022933 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_118_April2016_100_MGEnvironmentalOpen in IMG/M
3300023175Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101402AT metaGEnvironmentalOpen in IMG/M
3300024185Seawater microbial communities from Monterey Bay, California, United States - 84DEnvironmentalOpen in IMG/M
3300024235Seawater microbial communities from Monterey Bay, California, United States - 79DEnvironmentalOpen in IMG/M
3300024242Seawater microbial communities from Monterey Bay, California, United States - 91DEnvironmentalOpen in IMG/M
3300024247Seawater microbial communities from Monterey Bay, California, United States - 36D_rEnvironmentalOpen in IMG/M
3300024266Seawater microbial communities from Monterey Bay, California, United States - 75DEnvironmentalOpen in IMG/M
3300024267Seawater microbial communities from Monterey Bay, California, United States - 28DEnvironmentalOpen in IMG/M
3300024293Seawater microbial communities from Monterey Bay, California, United States - 63DEnvironmentalOpen in IMG/M
3300024314Seawater microbial communities from Monterey Bay, California, United States - 70DEnvironmentalOpen in IMG/M
3300024413Seawater microbial communities from Monterey Bay, California, United States - 21DEnvironmentalOpen in IMG/M
3300024417Seawater microbial communities from Monterey Bay, California, United States - 62DEnvironmentalOpen in IMG/M
3300024420Seawater microbial communities from Monterey Bay, California, United States - 40DEnvironmentalOpen in IMG/M
3300025513Saline lake microbial communities from Ace Lake, Antarctica - Antarctic Ace Lake Metagenome 02UKD (SPAdes)EnvironmentalOpen in IMG/M
3300025672Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - Saanich Inlet SI073_LV_135m_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025806Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_30_<0.8_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025870Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI037_S3LV_125m_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025886Pelagic Microbial community sample from North Sea - COGITO 998_met_10 (SPAdes)EnvironmentalOpen in IMG/M
3300026085Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S23_td_SurfaceB_ad_5m_LV_B (SPAdes)EnvironmentalOpen in IMG/M
3300026138Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG SF2_A_H2O_MG (SPAdes)EnvironmentalOpen in IMG/M
3300026254Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201302SV86 (SPAdes)EnvironmentalOpen in IMG/M
3300026270Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP2014F12-01SV265 (SPAdes)EnvironmentalOpen in IMG/M
3300027062Ammonia-oxidizing marine microbial communities from Monterey Bay, California, USA - C0912_C27A4_80 (SPAdes)EnvironmentalOpen in IMG/M
3300027081Ammonia-oxidizing marine microbial communities from Monterey Bay, California, USA - C0912_C33A6_35 (SPAdes)EnvironmentalOpen in IMG/M
3300027243Estuarine microbial communities from the Columbia River estuary - metaG 1556A-3 (SPAdes)EnvironmentalOpen in IMG/M
3300027255Estuarine microbial communities from the Columbia River estuary - metaG 1558A-02 (SPAdes)EnvironmentalOpen in IMG/M
3300027553Ammonia-oxidizing marine microbial communities from Monterey Bay, California, USA - CAN11_04_M0_20 (SPAdes)EnvironmentalOpen in IMG/M
3300027572Ammonia-oxidizing marine microbial communities from Monterey Bay, California, USA - CAN11_08_M0_20 (SPAdes)EnvironmentalOpen in IMG/M
3300027730 (restricted)Freshwater microbial communities from meromictic Lake La Cruz, Castile-La Mancha, Spain - LaCruzMarch2015_8mEnvironmentalOpen in IMG/M
3300028131Seawater microbial communities from Monterey Bay, California, United States - 53DEnvironmentalOpen in IMG/M
3300028397Seawater microbial communities from Monterey Bay, California, United States - 50DEnvironmentalOpen in IMG/M
3300028414Seawater microbial communities from Monterey Bay, California, United States - 33DEnvironmentalOpen in IMG/M
3300028488Marine microbial communities from Northeast Subartic Pacific Ocean, Canada - LP_J_2015_P26_1320mEnvironmentalOpen in IMG/M
3300031630Marine microbial communities from water near the shore, Antarctic Ocean - #38EnvironmentalOpen in IMG/M
3300031644Marine microbial communities from water near the shore, Antarctic Ocean - #5EnvironmentalOpen in IMG/M
3300031757Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 200m 32315EnvironmentalOpen in IMG/M
3300031786Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 4 MA124EnvironmentalOpen in IMG/M
3300031801Marine microbial communities from Western Arctic Ocean, Canada - CB27_Tmax_986EnvironmentalOpen in IMG/M
3300031851Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 40m 21515EnvironmentalOpen in IMG/M
3300032006Marine microbial communities from station ALOHA, North Pacific Subtropical Gyre - HC15-DNA-20-200_MGEnvironmentalOpen in IMG/M
3300032011Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 60m 3416EnvironmentalOpen in IMG/M
3300032073Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 40m 3416EnvironmentalOpen in IMG/M
3300032088Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 80m 21515EnvironmentalOpen in IMG/M
3300032278Marine microbial communities from station ALOHA, North Pacific Subtropical Gyre - HC15-DNA-20-500_MGEnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
SI34jun09_100mDRAFT_103270123300000254MarineNKDHNQNDENIDNIKCSPWAKFTISINPKIKLNPAAINE*
Ga0073579_141651913300005239MarineMAKIDKTMGKEKIGSRPSSFHNQKEKNIDSIKCSPCAKLTIPINPKIKLRPAAINA*
Ga0066861_1013560623300005522MarineIPQKAKSNIVIGIEKSGSKPNKDQSQKEENIESIKCSPCAKFTISINPKIKLKPAAINA*
Ga0066379_1003899023300005951MarineNKTMGKEKIGSRPSSFHNQKEKNIDSIKCSPCAKLTIPINPKIKLRPAAINA*
Ga0068486_145916513300006329MarineGIEKIGSMPNNDQSQNEENIDNIKCSP*AKFTISINPNIKLKPAAINA*
Ga0068488_143497513300006331MarineIVIGIEIIGSNPSKVHNLNEENIDNMRCSPCAKFTIPINPKIKLKPAAMSA*
Ga0066372_1047979223300006902MarineKVHNQNEENIDNMRCSPCAKFTIPINPKIKLKPAAMSA*
Ga0105019_127747323300007513MarineMAKIDKTIGNEKMGSRPSNFHNQKEKNIDSIKCYPCAKLTIPINPKIKLKPAAIKA*
Ga0181433_108443523300017739SeawaterSGSKPNNDQSQKEENIDNIKCSPXAKLTISINPKIKLRPAAINA
Ga0181411_116743023300017755SeawaterSKPNNDQSQKEENIDNIKCSPXAKLTISINPKIKLKPAAISA
Ga0181395_111004723300017779SeawaterPQKAINKIVIGIEKSGSKPNNDQSQKEENIDSIKCSPXAKLTISINPKIKLRPAAINA
Ga0181395_115359013300017779SeawaterHNQNDENIDNIKCSPXAKFTMSINPKIKLNPAAINA
Ga0181380_110019813300017782SeawaterPQNAINKMVIGIEKSGSKPNKDQSQNDENIDNIKCSPXAKFTISINPKIKLRPAAINA
Ga0181380_122606413300017782SeawaterDQSQKEENIDNIKCSPXAKLTISINPKIKLKPAAISA
Ga0181580_1104274923300017956Salt MarshVTIPQNANKSIVIGIENSGSKPNKDQSQNDENIDNIKCSPXAKLTISINPKIKLKPAAIN
Ga0181581_1055338013300017962Salt MarshNKSIVIGIENSGSKPNKDQSQNDENIDNIKCSPXAKFTISINPKIKLKPAAINA
Ga0181590_1039193313300017967Salt MarshIENNGSKPNKDQSQNDENIDNIKCSPXAKLTISINPKIKLKPAAINA
Ga0181600_1026241513300018036Salt MarshKSGSKPNNDQSQKDENIDNIKCSPXAKLTISINPKIKLKPAAINA
Ga0181601_1050956513300018041Salt MarshQSQKEENIDNIKCSPXAKLTISINPKIKLKPAAINA
Ga0181592_1015060413300018421Salt MarshKIVIGIEKSGSKPNNDQSQKDENIDSIKCSPXAKFTISINPKIKLKPAAISA
Ga0181568_1128690113300018428Salt MarshKSIVIGIENNGSKPNKDQSQNDENIDNIKCSPXAKFTISINPKIKLKPAAINA
Ga0187842_103216623300018790FreshwaterYYFNGVSRVNTPRNAIKIIVNGIENIGSIPNNIQNQNVENIEIIKXSPXAKFTISINPKIKLNPAAINA
Ga0181562_1028682723300019459Salt MarshVIGIEKSGSKPNNDQSQKDENIDNIKCSPXAKLTISINPKIKLKPAAINA
Ga0181596_1018497313300020177Salt MarshIEKSGSKPNNDQSQKDENIDNIKCSPXAKLTISINPKIKLKPAAINA
Ga0206129_1008985223300020182SeawaterINKIVIGIEKIGSNPNNDHSQKEENIDSIKCSPXAKLTISINPNIKLNPAAINA
Ga0181578_1008208013300020189Salt MarshPVSGSKPNNDQSQKDENIDSIKCSPXAKFTISINPKIKLKPAAISA
Ga0211537_105438223300020262MarineNNDHNQKDENIDSIKCSPXAKLTMFIKPNIKLKPAAINA
Ga0211490_105111913300020297MarineIPQKAKSNIVIGIEKSGSKPKRDQSQKEENIESIKCSPCAKFTISINPKIKLKPAAINA
Ga0211572_112047813300020330MarineVAIPQSAINKMVIGIEKIGSIPNNDHNQKDENIDSIKCSPXAKLTMSIKPNIKLKPAAIN
Ga0211626_104559523300020343MarineSIPQKAKSNIVIGIEKSGSKPKRDQSQKEENIESIKCSPCAKFTISINPKIKLKPAAINA
Ga0211531_108031313300020361MarineMPQSAISKMVIGIEKIGSIPNNDHNQKDENIDSIKCSPXAKLTMFIKPNIKLKPAAINA
Ga0211531_109678923300020361MarineVAIPQSAINKMVIGIEKIGSIPNNDHNQKDENIDSIKCSPXAKLTISIKPKIKLKPAAIN
Ga0211660_1021657513300020373MarineTPQKAINKIVIGIEKIGSKPNNDHNQKDENIDNIKCSPXAKLTISINPNIKLNPAAINA
Ga0211678_1027009113300020388MarineGSKPNNDQSQKDENIDNIKCSPXAKLTISINPKIKLKPAAINA
Ga0211666_1006054913300020392MarinePQNAISSIVIGIENSGSKPNKDQSQKDENIDNIKCSPXAKFTISIKPKIKLKPAAINA
Ga0211623_1003634323300020399MarineGIEKIGSIPNKDQSQNEENIDNIKCSPCAKFTISISPKIKLRPAAIKA
Ga0211659_1032305713300020404MarineEKSGSKPNKDQSQKEENIESIKCSPCAKFTISINPKIKLNPAAINA
Ga0211644_1001801213300020416MarineKSRIVIGIEKSGSKPNRDQSQKEENIESIKCSPCAKLTISINPNIKLKPAAINA
Ga0211644_1003815713300020416MarineMIPQNANKRIVIGIENNGSKPNKDQSQNDENIDNIKCSPXAKFTISINPKIKLKPAAINA
Ga0211557_1011698513300020418MarineKDQSQNDENIDNIKCSPXAKFTISIKPKIKLKPAAINA
Ga0211556_1006570223300020432MarineMIPQNANKRIVIGIENNGSKPNKDQSQNDENIDNIKCSPXAKFTISIKPKIKLKPAAINA
Ga0211558_1029261323300020439MarineMIPQKANKSIVIGIENNGSKPNKDQSQNDENIDNIKCSPXAKFTISIKPKIKLKPAAINA
Ga0211642_1025861723300020449MarineKDQSQKDENIDNIKCSPXAKFTISINPKIKLRPAAINA
Ga0211514_1014299913300020459MarineQKAINKIVIGIEKSGSKPNNDQSQKDENIDNIKCSPXAKLTISINPKIKLKPAAINA
Ga0211514_1016350613300020459MarineIVIGIENNGSKPNNDQSQKDENIDNIKCSPXAKLTISISPKIKLKPAAINA
Ga0211486_1017220023300020460MarineQKAKSNIVIGIEKSGSKPKRDQSQKEENIESIKCSPCAKFTISINPKIKLKPAAINA
Ga0211546_1021168123300020462MarineIPQNAINKIVIGIEKIGSNPNSDHNQKDENIDSIKCSPXAKFTISINPNIKLKPAAINA
Ga0211714_1009804213300020466MarineNKDQSQNDENIDNIKCSPXAKFTISIKPKIKLKPAAINA
Ga0208049_10638823300020484FreshwaterPKKAIKIIVSGIENIGSIPNNIQNQNVENIEIIKXSPXAKFTISINPKIKLNPAAINA
Ga0206677_1025581113300021085SeawaterITPQKAINKIVIGIEKIGSNPNNDHSQKEENIDSIKCSPXAKLTISINPNIKLNPAAINA
Ga0206683_1038145823300021087SeawaterKSGSKPNNDQSQKEENIDNIKCSPXAKLTISINPKIKLKPAAISA
Ga0206679_1024946123300021089SeawaterMAKIDKTMGNEKIGSRPSSFHNQKEKNIDNIKCSPCAKLTIPINPKIKLRPAAINA
Ga0213864_1007033723300021379SeawaterTIPQNANKSIVIGIENSGSKPNKDQSQNDENIDNIKCSPXAKLTISINPKIKLKPAAINA
Ga0206685_1022672813300021442SeawaterSQKEKNIESIKCSPXAKFTIPIKPKIKLKPAAIKA
(restricted) Ga0233427_1027941423300022933SeawaterKIVIGIEKIGSNPNNDHSQKEENIDSIKCSPXAKLTISINPNIKLNPAAINA
Ga0255777_1038669623300023175Salt MarshMIPQNANKSIVIGIENNGSKPNKDQSQNDENIDNIKCSPXAKFTISINPKIKLKPAAINA
Ga0228669_104914323300024185SeawaterMAINKIVIGIEKIGSIPNNDHNQNEENIDNIRCSPXAKLTISIKPKIKLSPAAIKA
Ga0228665_102969823300024235SeawaterMAINKIVIGIEKIGSIPNNDHNQNEENIDNIKCSPXAKLTISIKPKIKLSPAAIKA
Ga0228673_107589923300024242SeawaterMAINKIVIGIEKIGSIPNNDHNQNEENIDNIRCSPXAKLTISIKQKIKLSPAAIKA
Ga0228675_103238413300024247SeawaterTQKAISKIVIGIEKSGSKPNNDQSQKEENIDNIKCSPXAKLTISINPKIKLKPAAISA
Ga0228661_103389113300024266SeawaterKAINKIVIGIEKSGSKPNNDQSQKEENIDNIKCSPXAKLTISINPKIKLKPAAISA
Ga0228623_104921513300024267SeawaterNKMVIGIEKSGSKPNKDQSQNDENIDNIKCSPXAKFTISINPKIKLRPAAINA
Ga0228651_104843013300024293SeawaterCVSIPQMAINKIVIGIEKIGSIPNNDHNQNEENIDNIRCSPXAKLTISIKPKIKLSPAAIKA
Ga0228657_105516713300024314SeawaterSTPQKAINKIVIGIEKSGSKPNNDQSQKEENIDNIKCSPXAKLTISINPKIKLKPAAISA
Ga0233393_106051613300024413SeawaterIKRIVIGIEKIGSKPNKDHNQKEENIDNIKCSPXAKLTISINPKIKLKPAAISA
Ga0228650_115835713300024417SeawaterKSGSKPNNDQSQKEENIDNIKCSPXAKLTISINPKIKLKPAAINA
Ga0228632_103918423300024420SeawaterSKPNNNQSQKEENIDNIKCSPXAKLTISINPKIKLKPAAISA
Ga0208413_104416823300025513Saline LakeVKTPHKAINKIVIGIEKIGSNPNKDHSQKDENIDSIKCSPXAKFTISINPKIKLNPAAIN
Ga0209663_104553923300025672MarineIGIEKIGSIPNKDQSQNEENIDNIKCSPCAKFTISISPKIKLKPAAIKA
Ga0208545_109643923300025806AqueousXVSTPQKAINKIVIGIEKIGSNPNKDHNQNDENIDNIKCSPXAKFTISINPKIKLKPAAINA
Ga0209666_118392523300025870MarineVITPQKAINKIVIGIEKIGSNPNNDHSQKEENIDSIKCSPXAKLTISINPNIKLNPAAIN
Ga0209632_1054652713300025886Pelagic MarineTPQKAINKIVMGIEKIGSNPNKDHNQNDENIDNIKCSPXAKFTMSINPKIKLNPAAINA
Ga0208880_101850613300026085MarineMIPQKANKSIVIGIENNGSKPNKDQSQNDENIDNIKCSPXAKFTISINPKIKLKPAAINA
Ga0209951_111469823300026138Pond WaterKSGSKPNNDQSQKDENIDSIKCSPXAKLTISINPKIKLRPAAINA
Ga0208522_107914313300026254MarineMPQSAISKMVIGIEKIGSIPNNDHNQKDENIDSIKCSPXAKLTMSIKPNIKLKPAAINA
Ga0207993_104965313300026270MarineKANKSIVIGIENNGSKPNKDQSQNDENIDNIKCSPXAKFTISIKPKIKLKPAAINA
Ga0208959_105178223300027062MarineKTMGKEKIGSRPSSFHNQKEKNIDSIKCSPCAKLTIPINPKIKLRPAAINA
Ga0208954_100902813300027081MarineKPNNDQSQKEENIDNIKCSPXAKLTISINPKIKLKPAAISA
Ga0208174_100632513300027243EstuarineIEKIGSNPNKDHNQNDENIDNIKCSPXAKFTISINPKIKLNPAAINA
Ga0208681_105328723300027255EstuarineVMGIEKIGSNPNKDHNQNDENIDNIKCSPXAKFTMSINPKIKLNPAAINA
Ga0208947_102908523300027553MarineAINKIVIGIEKIGSKPNNDHNQKDENIDNIKCSPXAKLTISINPNIKLNPAAINA
Ga0208947_103968713300027553MarineNKDHNQNDENIDNIKCSPXAKFTMSINPKIKLNPAAINA
Ga0208964_103194213300027572MarineNKIVIGIEKIGSIPNNDHSQNEENIDSIKCSPXAKFTISIKPKIKLSPAAIKA
(restricted) Ga0247833_109270923300027730FreshwaterTPKNAIKIIVNGIENIGSIPNNIQNQNVENIEIIKXSPXAKLTISINPKIKLNPAAINA
Ga0228642_113844123300028131SeawaterKIVIGIEKSGSKPNNDQSQKEENIDNIKCSPXAKLTISINPKIKLKPAAISA
Ga0228639_105062513300028397SeawaterSGSKPNNDQSQKEENIDNIKCSPXAKLTISINPKIKLKPAAISA
Ga0228627_106681313300028414SeawaterNNDQSQKEENIDNIKCSPXAKLTISINPKIKLKPAAISA
Ga0257113_106536623300028488MarineEIIGSNPSKVHNQNEENMDNMRCSPCAKFTIPINPKIKLKPAAMSA
Ga0308004_1026401223300031630MarineGSNPNKDHNQNDENIDNIKCSPXAKFTMSINPKIKLKPAAINA
Ga0308001_1026623523300031644MarineINSIVIGIEKIGSKPKRDHNQKDENMDSIRCSPXAKFTMSMRPKIKLKPAAIRA
Ga0315328_1047961123300031757SeawaterMAKIDKTMGKEKIGSRPSSFHNQKEKNIDSIKCSPCAKLTIPINPKIKLRPAAINA
Ga0315908_1047713623300031786FreshwaterIENIGSIPNNIQNQNVENIEIIKXSPXAKFTISINPKIKLNPAAINA
Ga0310121_1012306223300031801MarineMGIEKIGSNPNKDHNQKDENIDSIKCSPXAKFTISINPKIKLKPAAINA
Ga0315320_1057781823300031851SeawaterPQTAINKIVIGIEKIGSIPNNDQSQNEENIDSIKCSPXAKFTISIKPNIKLSPAAIKA
Ga0315320_1067934513300031851SeawaterDHSQNEENIDSIKCSPCAKLTISISPKIKLKPAAIRA
Ga0310344_1015872133300032006SeawaterNIVIGIEKSGSKPNKDQSQKDENIESIKCSPXAKLTISISPKIKLKPAAINA
Ga0315316_1033875823300032011SeawaterVSIPLMAKIDKTMGKEKIGSRPSSFHNQKEKNIDSIKCSPCAKLTIPINPKIKLRPAAIN
Ga0315316_1151333623300032011SeawaterTPQKAINKIVIGIEKIGSKPNNDHNQKEENIDSIKCSPXAKLTISINPNIKLNPAAISA
Ga0315315_1027184623300032073SeawaterPQKAINKIVIGIEKIGSNPNKDHNQNDENIDNIKCSPXAKFTMSINPKIKLNPAAINA
Ga0315321_1052496513300032088SeawaterQMAINKIVIGIEKIGSIPNNDHNQNEENIDNIKCSPXAKLTISIKPKIKLSPAAIKA
Ga0315321_1078404823300032088SeawaterVIGIEKSGSKPNNDQSQKDENIDNIKCSPXAKLTISINPKIKLRPAAINA
Ga0310345_1244691323300032278SeawaterPLMAKIDKTMGKEKIGSRPSSFHNQKEKNIDSIKCSPCAKLTIPINPKIKLRPAAINA


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