NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome Family F101294

Metagenome Family F101294

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F101294
Family Type Metagenome
Number of Sequences 102
Average Sequence Length 52 residues
Representative Sequence MSRRKGRTNVRLGILDEINQIDKRIKRFKNDEEKVTTLTSKRKVLTNKLKTKR
Number of Associated Samples 57
Number of Associated Scaffolds 102

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 3.00 %
% of genes near scaffold ends (potentially truncated) 21.57 %
% of genes from short scaffolds (< 2000 bps) 93.14 %
Associated GOLD sequencing projects 45
AlphaFold2 3D model prediction Yes
3D model pTM-score0.62

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (81.373 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine
(81.373 % of family members)
Environment Ontology (ENVO) Unclassified
(97.059 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Saline → Water (saline)
(95.098 % of family members)



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Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
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IDLabel
.2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.
1NpDRAFT_103251292
2JGI25134J35505_100970054
3JGI25134J35505_101373682
4Ga0066854_101447183
5Ga0078746_10366702
6Ga0068503_104513903
7Ga0098033_11177864
8Ga0098033_11698673
9Ga0098033_12167111
10Ga0098035_10413595
11Ga0098058_11002551
12Ga0098058_11601983
13Ga0098058_11778742
14Ga0098040_11112211
15Ga0098040_11384402
16Ga0098040_11435403
17Ga0098040_11715311
18Ga0098040_11752892
19Ga0098040_12434703
20Ga0098048_12473843
21Ga0098039_11263913
22Ga0098044_10830265
23Ga0098044_11043974
24Ga0098044_12758591
25Ga0098044_12806792
26Ga0098044_13878211
27Ga0098054_10553225
28Ga0098054_12033702
29Ga0098054_12991763
30Ga0098055_11145124
31Ga0098055_11258642
32Ga0098055_11658632
33Ga0098055_12309702
34Ga0098055_12825593
35Ga0098060_10172952
36Ga0098060_10446335
37Ga0098057_11824951
38Ga0098034_10347295
39Ga0098034_11007965
40Ga0098034_11386622
41Ga0098034_11807004
42Ga0098036_12607353
43Ga0098046_10653835
44Ga0098046_10841042
45Ga0070747_11912693
46Ga0098052_10887721
47Ga0098052_11959462
48Ga0098052_12404123
49Ga0098052_13965381
50Ga0114910_11136071
51Ga0102887_11346591
52Ga0102886_11913532
53Ga0098049_11676672
54Ga0098049_11971051
55Ga0098056_10884702
56Ga0098056_11052443
57Ga0098061_11659373
58Ga0098059_10334872
59Ga0098059_11033793
60Ga0098059_13269351
61Ga0098059_13344431
62Ga0098047_101859692
63Ga0098047_102152241
64Ga0098047_103922023
65Ga0181374_10201533
66Ga0181374_10453141
67Ga0181372_10574532
68Ga0181375_10788552
69Ga0181416_10618282
70Ga0187220_11820843
71Ga0181425_12091573
72Ga0181432_10746124
73Ga0181432_11945701
74Ga0181432_12775823
75Ga0181395_10746244
76Ga0233429_10350739
77Ga0255048_100764172
78Ga0208012_10128993
79Ga0208012_10644432
80Ga0208920_10689813
81Ga0208668_10114508
82Ga0208792_10940872
83Ga0208011_10218811
84Ga0208011_10672332
85Ga0208011_11321582
86Ga0208011_11335701
87Ga0208010_10146204
88Ga0208010_10843311
89Ga0208010_11010991
90Ga0208434_10463915
91Ga0208669_10054636
92Ga0208669_10070318
93Ga0208793_11120104
94Ga0208553_11381252
95Ga0209349_11416321
96Ga0208433_11022932
97Ga0208790_11608692
98Ga0209434_11932431
99Ga0209128_10840333
100Ga0208134_10892082
101Ga0233415_103155671
102Ga0233413_100757603
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 54.32%    β-sheet: 0.00%    Coil/Unstructured: 45.68%
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Variant

5101520253035404550MSRRKGRTNVRLGILDEINQIDKRIKRFKNDEEKVTTLTSKRKVLTNKLKTKRSequenceα-helicesβ-strandsCoilSS Conf. score
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.62
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains




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Phylogeny

NCBI Taxonomy

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All Organisms
Unclassified
18.6%81.4%
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Associated Scaffolds



Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).



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Environmental Properties

Associated Habitat Types

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Visualization
Marine
Deep Ocean
Marine
Seawater
Marine Sediment
Aqueous
Estuarine
Freshwater And Marine
Seawater
81.4%3.9%6.9%
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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).


Geographical Distribution
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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
NpDRAFT_1032512923300000929Freshwater And MarineRMRRRKGKTNVRLAALDEINQIDKRLKRFKNDEEKVTALMSKRNNLRSKLKTKR*
JGI25134J35505_1009700543300002518MarineMSKRKERTNXXLGXLDEINQIDKRIKRFKNDEEKVTTLTSKRKVLTSKLK
JGI25134J35505_1013736823300002518MarineMSRRKERTNIKLGILDEINQIDKRIKRFKNDEEKVTTLTSKRKVLTSKLKTKR*
Ga0066854_1014471833300005431MarineMSKKKGKTNLRLATLDEINQIDKRLKRFKNDEEKVTALMSKRNNLRSKLKTKR*
Ga0078746_103667023300005821Marine SedimentMSKKKGKTNLRLATLDEINQIDKRLKRFKNDEEKVTALMSKRNNLRNKLKTNK*
Ga0068503_1045139033300006340MarineMSGRKGKTNIRLAVLDEINQIDRRLKKSKIRNNEEETSKLMSKRNTLRNKLKTNK*
Ga0098033_111778643300006736MarineMSRRKGRTNIKLGILDEINQIDKRLKKFNGRGRLNEEADKLISKRKVLTSKLKTKR*
Ga0098033_116986733300006736MarineEKTNIKLGILNEINYIDRRLKKFNGKGRLNEEADKLISKRKILTNKLKTKR*
Ga0098033_121671113300006736MarineTNVRLGILDEINQIDKRIKRFKNDEEKVTTLTSKRKVLTNKLKTKR*
Ga0098035_104135953300006738MarineMSKRKERTNVRLGILDEINQIDKRIKRFKNDEEKVTTLTSKRKTLTNKLKTKR*
Ga0098058_110025513300006750MarineMSKKKGKTNLRLAALDEINQIDKRLKRFKNNEEKVTALISKRNNLRSKLKTNK*
Ga0098058_116019833300006750MarineMSKRKERTNVRLGILDEINQIDKRIKRFKNDEEKVITLTSKRKVLTNKLKTKR*
Ga0098058_117787423300006750MarineMSRRKGRTNIKLGILDEINQIDKRLKKFNGRGRLNEEADNLISKRKVLTNKLKTKR*
Ga0098040_111122113300006751MarineGRTNVRLGILDEINQIDKRIKRFKNDEEKVTTLTSKRKVLTNKLKTKR*
Ga0098040_113844023300006751MarineMSKRKERTNIKLGILDEINQIDKRLKRFKNNEEKVTTLTSKRKVLTNKLKTKR*
Ga0098040_114354033300006751MarineMSRRKGRTNIKLGILDEINQIDKRIKRFKNDEEKVTTLTSKRKILTNKLKTKR*
Ga0098040_117153113300006751MarineRRKGRTNVRLGILDEINQIDKRIKRFKNDEEKVTALTSKRKVLTNKLKTKR*
Ga0098040_117528923300006751MarineMSKKKGKTNLRLATLDEINQIDKRLKRFKNNEEKVTALISKRNNLRNKLKTNK*
Ga0098040_124347033300006751MarineMSKKKGKTNLRLAALDEINQIDKRLKRFKNDEEKVTALMSKRNNLRNKLKTNK*
Ga0098048_124738433300006752MarineMSKRKERTNIKLGILDEINQIDKRIKRFKNDEEKVTTLTSKRKILTNKLKTKR*
Ga0098039_112639133300006753MarineMSKKKGKTNARLAVLNEINHTDKRLKRFKNNEEETAKLMSRRNLLRSKLKTK*
Ga0098044_108302653300006754MarineMSKKKGKTNLRLAALDEINQIDKRLKRFKNDEEKVTTLMSKRNNLRNKLKTNK*
Ga0098044_110439743300006754MarineMSRRKGRTNIKLGILDEINQIDKRIKRFKNDEEKVTTLTSKRKVLTSKLKTKR*
Ga0098044_127585913300006754MarineMSRRKGRTNVRLGILDEINQIDKRIKRFKNDEEKVTTLTSKRKILTNKLKTKR*
Ga0098044_128067923300006754MarineMSKKKGKTNLRLAALDEINQIDKRLKRFKNDEEKVTTLMSKRNNLRSKLKTKR*
Ga0098044_138782113300006754MarineMSRRKGRTNVRLGILDEINQIDKRIKRFKNDEEKVTALTSKRKVLTNKLKTKR*
Ga0098054_105532253300006789MarineMSKKKGKTNLRLAALDEINQIDKRLKRFKNDEEKVAALMSKRNNLRNKLKTNK*
Ga0098054_120337023300006789MarineMSKKKGKTNLRLAALDEINQIDKRLKRFKNNEEKVTALMSKRNNLRNKLKTNK*
Ga0098054_129917633300006789MarineMSKRKGNTNRKLEALNEINKIDKKLKKFNGKGILNEEADKLISKRDSLRARLKTKR*
Ga0098055_111451243300006793MarineMSRRKGKTNIRLATLDEINQIDKRLKRFKNDEEKVTALISKRNNLRNKLKTNK*
Ga0098055_112586423300006793MarineMSKRKGRTNIRLEMLNEINQIDKRLKRFKNNEEKVTTLTSRRNTLRSKLK*
Ga0098055_116586323300006793MarineMSRRKGRTNVRLGILDEINQIDKRIKRFKNDEEKVITLTSKRKVLTNKLKTKR*
Ga0098055_123097023300006793MarineMSKRKERTNVRLGILDEINQIDKRIKRFKNDEEKVTTLTSKRKVLTSKLKTKR*
Ga0098055_128255933300006793MarineMSRRKGKTNVRLAALDEINQIDKRLKRFKNDEEKVTALMSKRNNLRNKLKTNK*
Ga0098060_101729523300006921MarineMSRRKGKTNIRLAALDEINQIDKRLKRFKNDEEKVTSLISKRNNLRNKLKTNK*
Ga0098060_104463353300006921MarineMSRRKGRTNVRLAALDEINQIDKRLKRFKNDEEKVAALTSKRNNLRNKLKTNK*
Ga0098057_118249513300006926MarineKVKTNIRLSLLNEINQTDKRLKRFKNDEEKVTTLISKRNTLRNKLKTKR*
Ga0098034_103472953300006927MarineMSRRKERTNIKLGILDEINQIDKRIKRFKNDEEKVTTLTSKRKTLTNKLKTKR*
Ga0098034_110079653300006927MarineMSRRKGRTNIKLGILDEINQIDKRIKRFKNDEEKVTTLTSKRKVLTNKLK
Ga0098034_113866223300006927MarineMSKRKERTNIKLGILDEINQIDKRIKRFKNDEEKVTTLTSKRKVLTSKLKTKR*
Ga0098034_118070043300006927MarineMSKKKGKTNLRLAALDEINQIDKRLKRFKNNEEKVTALISKRNN
Ga0098036_126073533300006929MarineMSRRKGKTNIRLAALDEINQIDKRLKRFKNDEEKVTSLISKRNNLRNKLK
Ga0098046_106538353300006990MarineMSKKKGKTNLRLAALDEINQIDKRLKRFKNDEEKVTALMSKRNNLRNKLK
Ga0098046_108410423300006990MarineMSRRKGKTNIRLATLDEINQIDKRLKRFKNDEEKVAALTSKRNNLRNKLKTNK*
Ga0070747_119126933300007276AqueousMSRRKGKTNVRLAALDEINQIDKRLKRFKNDEEKVTALMSKRNNLRNKLKTN
Ga0098052_108877213300008050MarineMSKKKEKTNRKLEMLNEINLIDKRLKRFKNDEEKITSLTSRRNTLRNQLKTNK*
Ga0098052_119594623300008050MarineMSRRKGRTNVRLGILDEINQIDKRIKRFKNDEEKVTTLTSKRKVLTSKLKTKR*
Ga0098052_124041233300008050MarineMSKRKERTNVKLGILDEINQIDKRIKRFKNDEEKVTTLTSKRKVL
Ga0098052_139653813300008050MarineKTNKKLRILNEINYIDIRLKKFNGKGRLNEEADKLISKRKTLTNKLKTKK*
Ga0114910_111360713300008220Deep OceanMSRRKGRTNIKLGILDEINQIDKRLKRFKNDEEKVTTLTSKRKTLTNKLKTKR*
Ga0102887_113465913300008961EstuarineMSRRKGKTNVRLAALDEINQIDKRLKRFKNDEEKVTALMSKRNNLRSKLKTKR*
Ga0102886_119135323300009052EstuarineMSRRKGKTNIRLAALDEINQIDKRLKRFKNDEEKVTALMSKRNNLRSKLKTKR*
Ga0098049_116766723300010149MarineMSRRKGRTNVRLGILDEINQIDKRIKRFKNDEEKVTTLTSKRKVLTNKLKTKR*
Ga0098049_119710513300010149MarineMSRRKGRTNIKLGILDEINQIDKRIKRFKNNEEKVITLTSKRKLLTNKLKTKK*
Ga0098056_108847023300010150MarineMSKRKERTNVRLGILDEINQIDKRIKRFKNDEEKVTTLTSKRKVLTNKLKSKR*
Ga0098056_110524433300010150MarineMSKKKGKTNLRLAALDEINQIDKRLKRFKHDEEKVTTLMSKRNNLRSKLKTKR*
Ga0098061_116593733300010151MarineMSRRKERTNIKLGILDEINQIDKRIKRFKNDEEKVTTLTSKRKVLTNKLKTKR*
Ga0098059_103348723300010153MarineMSKKKEKTNRKLEILNEINLIDKRLKRFKNDEEKITSLTSRRNTLRNQLKTNK*
Ga0098059_110337933300010153MarineMSKRKERTNIKLGILDEINQIDKRLKRFKNNEEKVTTLTSKRNTLRNKLKTKR*
Ga0098059_132693513300010153MarineMSRRKGRTNVRLGILDEINQIDKRIKRFKNDEEKVTALTSKRKTLTNKLKTKR*
Ga0098059_133444313300010153MarineMSKKKGKTNLRLAALDEINQIDKRLKRFKNDEEKVATLISKRKTLTNKLKTKR*
Ga0098047_1018596923300010155MarineMSRRKGRTNIKLGILDEINQIDKRIKRFKNDEEKVTTLTSKRKVLTNKLKTKR*
Ga0098047_1021522413300010155MarineVRLGILDEINQIDKRIKRFKNDEEKVTTLTSKRKVLTNKLKTKR*
Ga0098047_1039220233300010155MarineRTNIKLGILDEINQIDKRIKRFKNNEEKVTALVSKRNNLKNKLKTKR*
Ga0181374_102015333300017702MarineMSRRKGRTNIKLGILDEIHQIDKRLKKFNGRGRLNEEADKLISKRKVLTSKLKTKR
Ga0181374_104531413300017702MarineMSKKKGKTNLRLAMLDEINQIDKRLKRFKNDEEKVTALISKRNNLRNKLKTNK
Ga0181372_105745323300017705MarineMSKRKERTNVRLGILDEINQIDKRIKRFKNDEEKVTTLTSKRKVLTSKLKTKR
Ga0181375_107885523300017718MarineMSKKKGKTNLRLATLDEINQIDKRLKRFKNDEEKVTALISKRNNLRNKLKTNK
Ga0181416_106182823300017731SeawaterMSRRKGKTNIKLGILDEINQIDKRLKRFKNDEEKVTTLTSKRKVLTNKLKTKR
Ga0187220_118208433300017768SeawaterMSRRKGTTNIKLGILDEINQIDKRLKRFKNDEEKVTTLTSKRKVLTNKLKTKR
Ga0181425_120915733300017771SeawaterMSRRKGKTNIRLAALDEINQIDKRLKRFKSDEEKVTALISKRNNLRNKLKTNK
Ga0181432_107461243300017775SeawaterMSKKKERTNIKLGYLNEINYIDKRLKKFNGKGRLNEEADKLMSKRKVLTNKLKTKR
Ga0181432_119457013300017775SeawaterTKMSRRKERTNIRLGILDEINQIDKRIKRFKNDEEKVTTLTSKRKVLTNKLKTKR
Ga0181432_127758233300017775SeawaterMSRRKGRTNIKLGILDEINQIDKRIKRFKNNEEKVTTLTSKRKVLTSKLKTKK
Ga0181395_107462443300017779SeawaterMSRRKGKTNIRLAALDEINQIDKRLKRFKNDEEKVTALISKRNNLRNKLKTNK
(restricted) Ga0233429_103507393300022902SeawaterMSKKKGKTNLRLATLDEINQIDKRLKRFKNDEEKVTALISKRNNLRSKLKTKR
(restricted) Ga0255048_1007641723300024518SeawaterMSKKKGKTNIKLELLNELNSINKRLKRFKNDAEKCSSLISKRNNLRAKLKGS
Ga0208012_101289933300025066MarineMSKKKGKTNLRLATLDEINQIDKRLKRFKNDEEKVTALMSKRNNLRNKLKTNK
Ga0208012_106444323300025066MarineMSKRKERTNVKLGILDEINQIDKRIKRFKNDEEKVTTLTSKRKVLTSKLKTKR
Ga0208920_106898133300025072MarineMSKRKERTNVRLGILDEINQIDKRIKRFKNDEEKVTTLTSKRKTLTNKLKTKR
Ga0208668_101145083300025078MarineMSRRKGRTNVRLGILDEINQIDKRIKRFKNDEEKVTTLTSKRKVLTNKLKTKR
Ga0208792_109408723300025085MarineMSKRKERTNVRLGILDEINQIDKRIKRFKNDEEKVTTLTSKRKVLTNKLKTKR
Ga0208011_102188113300025096MarineMSKRKERTNVRLGILDEINQIDKRIKRFKNDEEKVTTLTSKRKVLTSKLKTKRXKNTIN
Ga0208011_106723323300025096MarineMSKRKERTNIKLGILDEINQIDKRIKRFKNDEEKVTTLTSKRKVLTSKLKTKR
Ga0208011_113215823300025096MarineMSKRKGRTNIKLGILNEINQIDKRLKKFNGRGRLNEEADNLISKRKVLTNKLKTKR
Ga0208011_113357013300025096MarineRRKGRTNVRLGILDEINQIDKRIKRFKNDEEKVTALTSKRKVLTNKLKTKR
Ga0208010_101462043300025097MarineMSKRKERTNVRLGILDEINQIDKRIKRFKNDEEKVITLTSKRKVLTNKLKTKR
Ga0208010_108433113300025097MarineKRKERTNVRLGILDEINQIDKRIKRFKNDEEKVTTLTSKRKTLTNKLKTKR
Ga0208010_110109913300025097MarineMSRRKERTNIKLGILDEINQIDKRIKRFKNDEEKVTTLTSKRKTLTNKLKTKRXVKVKNC
Ga0208434_104639153300025098MarineMSRRKGKTNIRLATLDEINQIDKRLKRFKNNEEKVAALMSKRNNLRNKLKTKR
Ga0208669_100546363300025099MarineMSRRKGKTNIRLAALDEINQIDKRLKRFKNDEEKVTSLISKRNNLRNKLKTNK
Ga0208669_100703183300025099MarineMSRRKGKTNIRLATLDEINQIDKRLKRFKNDEEKVTALISKRNNLRNKLKTNK
Ga0208793_111201043300025108MarineMSKKKGKTNLRLATLDEINQIDKRLKRFKNDEEKVAALMSKRNNLRNKLKTNK
Ga0208553_113812523300025109MarineVRLGILDEINQIDKRIKRFKNDEEKVTTLTSKRKVLTNKLKTKR
Ga0209349_114163213300025112MarineMSKRKGRTNIKLGILDKINQIDKRLKKFNGRGRLNEEADNLISKRKVLTSKLKTKK
Ga0208433_110229323300025114MarineMSKKKGKTNLRLATLDEINQIDKRLKRFKNDEEKVTTLMSKRNNLRSK
Ga0208790_116086923300025118MarineMSKKKGKTNLRLAALDEINQIDKRLKRFKNDEEKVTALMSKRNNLRNKLKTNK
Ga0209434_119324313300025122MarineMSKRKGRTNIKLGILDEINQIDKRIKRFKNDEEKVTTLTSKRKVLTSKLKTKR
Ga0209128_108403333300025131MarineMSRRKERTNIKLGILDEINQIDKRIKRFKNDEEKVTTLTSKRKVLTSKLKTKR
Ga0208134_108920823300025652AqueousMSRRKGKTNVRLAALDEINQIDKRLKRFKNDEEKVTALMSKRNNLRNKLKTNK
(restricted) Ga0233415_1031556713300027861SeawaterMSRRKGRTNIKLGILDEINQIDKRLKRFKNDEEKVTTLISKRNN
(restricted) Ga0233413_1007576033300027996SeawaterMSKKKGKTNLRLATLDEINQIDKRLKRFKNDEEKVTALMSKRNNLRSKLKTKR


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