Metagenome Family F101294

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F101294
Family Type	Metagenome
Number of Sequences	102
Average Sequence Length	52 residues
Representative Sequence	MSRRKGRTNVRLGILDEINQIDKRIKRFKNDEEKVTTLTSKRKVLTNKLKTKR
Number of Associated Samples	57
Number of Associated Scaffolds	102

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	3.00 %
% of genes near scaffold ends (potentially truncated)	21.57 %
% of genes from short scaffolds (< 2000 bps)	93.14 %
Associated GOLD sequencing projects	45
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.62

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (81.373 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine (81.373 % of family members)
Environment Ontology (ENVO)	Unclassified (97.059 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline) (95.098 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 54.32% β-sheet: 0.00% Coil/Unstructured: 45.68%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.62
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.62
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 102 Family Scaffolds
PF13479	AAA_24	3.92
PF00462	Glutaredoxin	1.96
PF08291	Peptidase_M15_3	0.98

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	81.37 %
All Organisms	root	All Organisms	18.63 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	81.37 %
Viruses	superkingdom	All Organisms → Viruses	14.71 %
cellular organisms	root	All Organisms → cellular organisms	3.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	81.37 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	8.82 %
unclassified viruses	clade	All Organisms → Viruses → unclassified viruses	5.88 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	2.94 %
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	81.37 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	8.82 %
unclassified DNA viruses	no rank	All Organisms → Viruses → unclassified viruses → unclassified DNA viruses	4.90 %
Virus NIOZ-UU157	species	All Organisms → Viruses → unclassified viruses → Virus NIOZ-UU157	0.98 %
DPANN group	clade	All Organisms → cellular organisms → Archaea → DPANN group	0.98 %
Spirochaetes	phylum	All Organisms → cellular organisms → Bacteria → Spirochaetes	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	81.37 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	8.82 %
unclassified dsDNA viruses	no rank	All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses	4.90 %
unclassified Spirochaetota	no rank	All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota	0.98 %
Nanoarchaeota	phylum	All Organisms → cellular organisms → Archaea → DPANN group → Nanoarchaeota	0.98 %
Virus NIOZ-UU157	species	All Organisms → Viruses → unclassified viruses → Virus NIOZ-UU157	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	81.37 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	8.82 %
Prokaryotic dsDNA virus sp.	species	All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.	4.90 %
unclassified Nanoarchaeota	no rank	All Organisms → cellular organisms → Archaea → DPANN group → Nanoarchaeota → unclassified Nanoarchaeota	0.98 %
Spirochaetota bacterium	species	All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota → Spirochaetota bacterium	0.98 %
Virus NIOZ-UU157	species	All Organisms → Viruses → unclassified viruses → Virus NIOZ-UU157	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	81.37 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	8.82 %
Prokaryotic dsDNA virus sp.	species	All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.	4.90 %
Nanoarchaeota archaeon	species	All Organisms → cellular organisms → Archaea → DPANN group → Nanoarchaeota → unclassified Nanoarchaeota → Nanoarchaeota archaeon	0.98 %
Spirochaetota bacterium	species	All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota → Spirochaetota bacterium	0.98 %
Virus NIOZ-UU157	species	All Organisms → Viruses → unclassified viruses → Virus NIOZ-UU157	0.98 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000929\|NpDRAFT_10325129	Not Available	503	Open in IMG/M
3300002518\|JGI25134J35505_10097005	Not Available	648	Open in IMG/M
3300002518\|JGI25134J35505_10137368	Not Available	505	Open in IMG/M
3300005431\|Ga0066854_10144718	Not Available	798	Open in IMG/M
3300005821\|Ga0078746_1036670	Not Available	1042	Open in IMG/M
3300006736\|Ga0098033_1117786	Not Available	751	Open in IMG/M
3300006736\|Ga0098033_1169867	Not Available	608	Open in IMG/M
3300006736\|Ga0098033_1216711	All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.	528	Open in IMG/M
3300006738\|Ga0098035_1041359	Not Available	1713	Open in IMG/M
3300006750\|Ga0098058_1100255	All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.	783	Open in IMG/M
3300006750\|Ga0098058_1160198	All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.	592	Open in IMG/M
3300006750\|Ga0098058_1177874	Not Available	557	Open in IMG/M
3300006751\|Ga0098040_1111221	Not Available	821	Open in IMG/M
3300006751\|Ga0098040_1138440	Not Available	722	Open in IMG/M
3300006751\|Ga0098040_1143540	Not Available	708	Open in IMG/M
3300006751\|Ga0098040_1171531	Not Available	638	Open in IMG/M
3300006751\|Ga0098040_1175289	Not Available	630	Open in IMG/M
3300006751\|Ga0098040_1243470	Not Available	521	Open in IMG/M
3300006752\|Ga0098048_1247384	Not Available	521	Open in IMG/M
3300006753\|Ga0098039_1126391	All Organisms → cellular organisms → Bacteria	877	Open in IMG/M
3300006754\|Ga0098044_1083026	All Organisms → Viruses → Predicted Viral	1326	Open in IMG/M
3300006754\|Ga0098044_1104397	Not Available	1159	Open in IMG/M
3300006754\|Ga0098044_1275859	All Organisms → Viruses → unclassified viruses → Virus NIOZ-UU157	647	Open in IMG/M
3300006754\|Ga0098044_1280679	Not Available	640	Open in IMG/M
3300006754\|Ga0098044_1387821	Not Available	526	Open in IMG/M
3300006789\|Ga0098054_1055322	Not Available	1514	Open in IMG/M
3300006789\|Ga0098054_1203370	Not Available	721	Open in IMG/M
3300006789\|Ga0098054_1299176	All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota → Spirochaetota bacterium	575	Open in IMG/M
3300006793\|Ga0098055_1114512	Not Available	1049	Open in IMG/M
3300006793\|Ga0098055_1125864	Not Available	994	Open in IMG/M
3300006793\|Ga0098055_1165863	Not Available	847	Open in IMG/M
3300006793\|Ga0098055_1230970	Not Available	698	Open in IMG/M
3300006793\|Ga0098055_1282559	Not Available	621	Open in IMG/M
3300006921\|Ga0098060_1017295	All Organisms → Viruses → Predicted Viral	2271	Open in IMG/M
3300006921\|Ga0098060_1044633	All Organisms → Viruses → Predicted Viral	1321	Open in IMG/M
3300006926\|Ga0098057_1182495	All Organisms → cellular organisms → Bacteria	512	Open in IMG/M
3300006927\|Ga0098034_1034729	Not Available	1515	Open in IMG/M
3300006927\|Ga0098034_1100796	Not Available	827	Open in IMG/M
3300006927\|Ga0098034_1138662	Not Available	688	Open in IMG/M
3300006927\|Ga0098034_1180700	Not Available	591	Open in IMG/M
3300006929\|Ga0098036_1260735	Not Available	523	Open in IMG/M
3300006990\|Ga0098046_1065383	Not Available	832	Open in IMG/M
3300006990\|Ga0098046_1084104	Not Available	715	Open in IMG/M
3300007276\|Ga0070747_1191269	Not Available	724	Open in IMG/M
3300008050\|Ga0098052_1088772	All Organisms → cellular organisms → Archaea → DPANN group → Nanoarchaeota → unclassified Nanoarchaeota → Nanoarchaeota archaeon	1272	Open in IMG/M
3300008050\|Ga0098052_1195946	Not Available	786	Open in IMG/M
3300008050\|Ga0098052_1240412	Not Available	694	Open in IMG/M
3300008220\|Ga0114910_1113607	All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.	797	Open in IMG/M
3300008961\|Ga0102887_1134659	Not Available	769	Open in IMG/M
3300009052\|Ga0102886_1191353	Not Available	605	Open in IMG/M
3300010149\|Ga0098049_1167667	Not Available	677	Open in IMG/M
3300010149\|Ga0098049_1197105	Not Available	617	Open in IMG/M
3300010150\|Ga0098056_1088470	Not Available	1058	Open in IMG/M
3300010150\|Ga0098056_1105244	Not Available	962	Open in IMG/M
3300010151\|Ga0098061_1165937	Not Available	794	Open in IMG/M
3300010153\|Ga0098059_1033487	All Organisms → Viruses → Predicted Viral	2080	Open in IMG/M
3300010153\|Ga0098059_1103379	Not Available	1132	Open in IMG/M
3300010153\|Ga0098059_1326935	Not Available	584	Open in IMG/M
3300010153\|Ga0098059_1334443	Not Available	576	Open in IMG/M
3300010155\|Ga0098047_10185969	Not Available	798	Open in IMG/M
3300010155\|Ga0098047_10215224	Not Available	734	Open in IMG/M
3300010155\|Ga0098047_10392202	Not Available	520	Open in IMG/M
3300017702\|Ga0181374_1020153	Not Available	1189	Open in IMG/M
3300017702\|Ga0181374_1045314	Not Available	755	Open in IMG/M
3300017705\|Ga0181372_1057453	Not Available	657	Open in IMG/M
3300017718\|Ga0181375_1078855	Not Available	535	Open in IMG/M
3300017731\|Ga0181416_1061828	Not Available	885	Open in IMG/M
3300017768\|Ga0187220_1182084	Not Available	634	Open in IMG/M
3300017771\|Ga0181425_1209157	Not Available	610	Open in IMG/M
3300017775\|Ga0181432_1074612	Not Available	983	Open in IMG/M
3300017775\|Ga0181432_1194570	Not Available	635	Open in IMG/M
3300017775\|Ga0181432_1277582	Not Available	530	Open in IMG/M
3300017779\|Ga0181395_1074624	Not Available	1098	Open in IMG/M
(restricted) 3300022902\|Ga0233429_1035073	All Organisms → Viruses → Predicted Viral	2548	Open in IMG/M
(restricted) 3300024518\|Ga0255048_10076417	Not Available	1664	Open in IMG/M
3300025066\|Ga0208012_1012899	All Organisms → Viruses → Predicted Viral	1448	Open in IMG/M
3300025066\|Ga0208012_1064443	Not Available	519	Open in IMG/M
3300025072\|Ga0208920_1068981	Not Available	683	Open in IMG/M
3300025078\|Ga0208668_1011450	Not Available	1922	Open in IMG/M
3300025085\|Ga0208792_1094087	Not Available	525	Open in IMG/M
3300025096\|Ga0208011_1021881	Not Available	1636	Open in IMG/M
3300025096\|Ga0208011_1067233	Not Available	803	Open in IMG/M
3300025096\|Ga0208011_1132158	Not Available	509	Open in IMG/M
3300025096\|Ga0208011_1133570	Not Available	505	Open in IMG/M
3300025097\|Ga0208010_1014620	Not Available	1982	Open in IMG/M
3300025097\|Ga0208010_1084331	Not Available	667	Open in IMG/M
3300025097\|Ga0208010_1101099	Not Available	593	Open in IMG/M
3300025098\|Ga0208434_1046391	Not Available	964	Open in IMG/M
3300025099\|Ga0208669_1005463	All Organisms → Viruses → Predicted Viral	3891	Open in IMG/M
3300025099\|Ga0208669_1007031	All Organisms → Viruses → Predicted Viral	3331	Open in IMG/M
3300025108\|Ga0208793_1112010	Not Available	754	Open in IMG/M
3300025109\|Ga0208553_1138125	Not Available	541	Open in IMG/M
3300025112\|Ga0209349_1141632	Not Available	653	Open in IMG/M
3300025114\|Ga0208433_1102293	Not Available	709	Open in IMG/M
3300025118\|Ga0208790_1160869	Not Available	615	Open in IMG/M
3300025122\|Ga0209434_1193243	Not Available	531	Open in IMG/M
3300025131\|Ga0209128_1084033	All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.	1061	Open in IMG/M
3300025652\|Ga0208134_1089208	Not Available	875	Open in IMG/M
(restricted) 3300027861\|Ga0233415_10315567	Not Available	739	Open in IMG/M
(restricted) 3300027996\|Ga0233413_10075760	All Organisms → Viruses → Predicted Viral	1330	Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	100.00%

Habitat	Taxonomy	Distribution
Marine	Environmental → Aquatic → Marine	100.00%

Habitat	Taxonomy	Distribution
Oceanic	Environmental → Aquatic → Marine → Oceanic	83.33%
Strait	Environmental → Aquatic → Marine → Strait	6.86%
Inlet	Environmental → Aquatic → Marine → Inlet	3.92%
Coastal	Environmental → Aquatic → Marine → Coastal	2.94%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	1.96%
Neritic Zone	Environmental → Aquatic → Marine → Neritic Zone	0.98%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Aquatic → Marine → Oceanic → Unclassified	82.35%
Unclassified	Environmental → Aquatic → Marine → Strait → Unclassified	6.86%
Unclassified	Environmental → Aquatic → Marine → Inlet → Unclassified	3.92%
Unclassified	Environmental → Aquatic → Marine → Coastal → Unclassified	1.96%
Estuary	Environmental → Aquatic → Marine → Intertidal Zone → Estuary	1.96%
Aphotic Zone	Environmental → Aquatic → Marine → Oceanic → Aphotic Zone	0.98%
Sediment	Environmental → Aquatic → Marine → Coastal → Sediment	0.98%
Unclassified	Environmental → Aquatic → Marine → Neritic Zone → Unclassified	0.98%

Habitat	Taxonomy	Distribution
Marine	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine	81.37%
Seawater	Environmental → Aquatic → Marine → Strait → Unclassified → Seawater	6.86%
Seawater	Environmental → Aquatic → Marine → Inlet → Unclassified → Seawater	3.92%
Aqueous	Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous	1.96%
Estuarine	Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine	1.96%
Deep Ocean	Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean	0.98%
Marine	Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine	0.98%
Marine Sediment	Environmental → Aquatic → Marine → Coastal → Sediment → Marine Sediment	0.98%
Freshwater And Marine	Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Freshwater And Marine	0.98%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000929	Marine plume microbial communities from the Columbia River - 15 PSU	Environmental	Open in IMG/M
3300002518	Marine viral communities from the Pacific Ocean - ETNP_6_100	Environmental	Open in IMG/M
3300005431	Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV75	Environmental	Open in IMG/M
3300005821	Marine sediment microbial communities from Aarhus Bay station M5, Denmark - 25 cmbsf, PM1	Environmental	Open in IMG/M
3300006340	Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT238_2_0770m	Environmental	Open in IMG/M
3300006736	Marine viral communities from the Subarctic Pacific Ocean - 1_ETSP_OMZ_AT15124 metaG	Environmental	Open in IMG/M
3300006738	Marine viral communities from the Subarctic Pacific Ocean - 3_ETSP_OMZ_AT15126 metaG	Environmental	Open in IMG/M
3300006750	Marine viral communities from the Subarctic Pacific Ocean - 19_ETSP_OMZ_AT15317 metaG	Environmental	Open in IMG/M
3300006751	Marine viral communities from the Subarctic Pacific Ocean - 7_ETSP_OMZ_AT15161 metaG	Environmental	Open in IMG/M
3300006752	Marine viral communities from the Subarctic Pacific Ocean - 13_ETSP_OMZ_AT15268 metaG	Environmental	Open in IMG/M
3300006753	Marine viral communities from the Subarctic Pacific Ocean - 6_ETSP_OMZ_AT15160 metaG	Environmental	Open in IMG/M
3300006754	Marine viral communities from the Subarctic Pacific Ocean - 10_ETSP_OMZ_AT15264 metaG	Environmental	Open in IMG/M
3300006789	Marine viral communities from the Subarctic Pacific Ocean - 16_ETSP_OMZ_AT15313 metaG	Environmental	Open in IMG/M
3300006793	Marine viral communities from the Subarctic Pacific Ocean - 17_ETSP_OMZ_AT15314 metaG	Environmental	Open in IMG/M
3300006921	Marine viral communities from the Subarctic Pacific Ocean - 21_ETSP_OMZ_AT15319 metaG	Environmental	Open in IMG/M
3300006926	Marine viral communities from the Subarctic Pacific Ocean - 18_ETSP_OMZAT15316 metaG	Environmental	Open in IMG/M
3300006927	Marine viral communities from the Subarctic Pacific Ocean - 2_ETSP_OMZ_AT15125 metaG	Environmental	Open in IMG/M
3300006929	Marine viral communities from the Subarctic Pacific Ocean - 4_ETSP_OMZ_AT15127 metaG	Environmental	Open in IMG/M
3300006990	Marine viral communities from the Subarctic Pacific Ocean - 11B_ETSP_OMZ_AT15265_CsCl metaG	Environmental	Open in IMG/M
3300007276	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_31	Environmental	Open in IMG/M
3300008050	Marine viral communities from the Subarctic Pacific Ocean - 15_ETSP_OMZ_AT15312 metaG	Environmental	Open in IMG/M
3300008220	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_908	Environmental	Open in IMG/M
3300008961	Estuarine microbial communities from the Columbia River estuary - metaG 1550B-02	Environmental	Open in IMG/M
3300009052	Estuarine microbial communities from the Columbia River estuary - metaG 1550A-02	Environmental	Open in IMG/M
3300010149	Marine viral communities from the Subarctic Pacific Ocean - 13B_ETSP_OMZ_AT15268_CsCl metaG	Environmental	Open in IMG/M
3300010150	Marine viral communities from the Subarctic Pacific Ocean - 17B_ETSP_OMZ_AT15314_CsCl metaG	Environmental	Open in IMG/M
3300010151	Marine viral communities from the Subarctic Pacific Ocean - 22_ETSP_OMZ_AT15343 metaG	Environmental	Open in IMG/M
3300010153	Marine viral communities from the Subarctic Pacific Ocean - 20_ETSP_OMZ_AT15318 metaG	Environmental	Open in IMG/M
3300010155	Marine viral communities from the Subarctic Pacific Ocean - 12_ETSP_OMZ_AT15267 metaG	Environmental	Open in IMG/M
3300017702	Marine viral communities from the Subarctic Pacific Ocean - Lowphox_10 viral metaG	Environmental	Open in IMG/M
3300017705	Marine viral communities from the Subarctic Pacific Ocean - Lowphox_08 viral metaG	Environmental	Open in IMG/M
3300017718	Marine viral communities from the Subarctic Pacific Ocean - Lowphox_11 viral metaG	Environmental	Open in IMG/M
3300017731	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 39 SPOT_SRF_2013-01-16	Environmental	Open in IMG/M
3300017768	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 6 SPOT_SRF_2009-12-23 (version 2)	Environmental	Open in IMG/M
3300017771	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 48 SPOT_SRF_2013-11-13	Environmental	Open in IMG/M
3300017775	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 55 SPOT_SRF_2014-07-17	Environmental	Open in IMG/M
3300017779	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 18 SPOT_SRF_2010-12-16	Environmental	Open in IMG/M
3300022902 (restricted)	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_118_April2016_135_MG	Environmental	Open in IMG/M
3300024518 (restricted)	Seawater microbial communities from Jervis Inlet, British Columbia, Canada - JV7_2_2	Environmental	Open in IMG/M
3300025066	Marine viral communities from the Subarctic Pacific Ocean - 15B_ETSP_OMZ_AT15312_CsCl metaG (SPAdes)	Environmental	Open in IMG/M
3300025072	Marine viral communities from the Subarctic Pacific Ocean - 19_ETSP_OMZ_AT15317 metaG (SPAdes)	Environmental	Open in IMG/M
3300025078	Marine viral communities from the Subarctic Pacific Ocean - 18_ETSP_OMZAT15316 metaG (SPAdes)	Environmental	Open in IMG/M
3300025085	Marine viral communities from the Subarctic Pacific Ocean - 14_ETSP_OMZ_AT15311 metaG (SPAdes)	Environmental	Open in IMG/M
3300025096	Marine viral communities from the Subarctic Pacific Ocean - 7_ETSP_OMZ_AT15161 metaG (SPAdes)	Environmental	Open in IMG/M
3300025097	Marine viral communities from the Subarctic Pacific Ocean - 2_ETSP_OMZ_AT15125 metaG (SPAdes)	Environmental	Open in IMG/M
3300025098	Marine viral communities from the Subarctic Pacific Ocean - 13_ETSP_OMZ_AT15268 metaG (SPAdes)	Environmental	Open in IMG/M
3300025099	Marine viral communities from the Subarctic Pacific Ocean - 21_ETSP_OMZ_AT15319 metaG (SPAdes)	Environmental	Open in IMG/M
3300025108	Marine viral communities from the Subarctic Pacific Ocean - 17_ETSP_OMZ_AT15314 metaG (SPAdes)	Environmental	Open in IMG/M
3300025109	Marine viral communities from the Subarctic Pacific Ocean - 6_ETSP_OMZ_AT15160 metaG (SPAdes)	Environmental	Open in IMG/M
3300025112	Marine viral communities from the Pacific Ocean - ETNP_2_130 (SPAdes)	Environmental	Open in IMG/M
3300025114	Marine viral communities from the Subarctic Pacific Ocean - 3_ETSP_OMZ_AT15126 metaG (SPAdes)	Environmental	Open in IMG/M
3300025118	Marine viral communities from the Subarctic Pacific Ocean - 10_ETSP_OMZ_AT15264 metaG (SPAdes)	Environmental	Open in IMG/M
3300025122	Marine viral communities from the Pacific Ocean - ETNP_2_300 (SPAdes)	Environmental	Open in IMG/M
3300025131	Marine viral communities from the Pacific Ocean - ETNP_6_100 (SPAdes)	Environmental	Open in IMG/M
3300025652	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_31 (SPAdes)	Environmental	Open in IMG/M
3300027861 (restricted)	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Na_anoxic_12_MG	Environmental	Open in IMG/M
3300027996 (restricted)	Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Na_anoxic_6_MG	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
NpDRAFT_103251292	3300000929	Freshwater And Marine	RMRRRKGKTNVRLAALDEINQIDKRLKRFKNDEEKVTALMSKRNNLRSKLKTKR*
JGI25134J35505_100970054	3300002518	Marine	MSKRKERTNXXLGXLDEINQIDKRIKRFKNDEEKVTTLTSKRKVLTSKLK
JGI25134J35505_101373682	3300002518	Marine	MSRRKERTNIKLGILDEINQIDKRIKRFKNDEEKVTTLTSKRKVLTSKLKTKR*
Ga0066854_101447183	3300005431	Marine	MSKKKGKTNLRLATLDEINQIDKRLKRFKNDEEKVTALMSKRNNLRSKLKTKR*
Ga0078746_10366702	3300005821	Marine Sediment	MSKKKGKTNLRLATLDEINQIDKRLKRFKNDEEKVTALMSKRNNLRNKLKTNK*
Ga0068503_104513903	3300006340	Marine	MSGRKGKTNIRLAVLDEINQIDRRLKKSKIRNNEEETSKLMSKRNTLRNKLKTNK*
Ga0098033_11177864	3300006736	Marine	MSRRKGRTNIKLGILDEINQIDKRLKKFNGRGRLNEEADKLISKRKVLTSKLKTKR*
Ga0098033_11698673	3300006736	Marine	EKTNIKLGILNEINYIDRRLKKFNGKGRLNEEADKLISKRKILTNKLKTKR*
Ga0098033_12167111	3300006736	Marine	TNVRLGILDEINQIDKRIKRFKNDEEKVTTLTSKRKVLTNKLKTKR*
Ga0098035_10413595	3300006738	Marine	MSKRKERTNVRLGILDEINQIDKRIKRFKNDEEKVTTLTSKRKTLTNKLKTKR*
Ga0098058_11002551	3300006750	Marine	MSKKKGKTNLRLAALDEINQIDKRLKRFKNNEEKVTALISKRNNLRSKLKTNK*
Ga0098058_11601983	3300006750	Marine	MSKRKERTNVRLGILDEINQIDKRIKRFKNDEEKVITLTSKRKVLTNKLKTKR*
Ga0098058_11778742	3300006750	Marine	MSRRKGRTNIKLGILDEINQIDKRLKKFNGRGRLNEEADNLISKRKVLTNKLKTKR*
Ga0098040_11112211	3300006751	Marine	GRTNVRLGILDEINQIDKRIKRFKNDEEKVTTLTSKRKVLTNKLKTKR*
Ga0098040_11384402	3300006751	Marine	MSKRKERTNIKLGILDEINQIDKRLKRFKNNEEKVTTLTSKRKVLTNKLKTKR*
Ga0098040_11435403	3300006751	Marine	MSRRKGRTNIKLGILDEINQIDKRIKRFKNDEEKVTTLTSKRKILTNKLKTKR*
Ga0098040_11715311	3300006751	Marine	RRKGRTNVRLGILDEINQIDKRIKRFKNDEEKVTALTSKRKVLTNKLKTKR*
Ga0098040_11752892	3300006751	Marine	MSKKKGKTNLRLATLDEINQIDKRLKRFKNNEEKVTALISKRNNLRNKLKTNK*
Ga0098040_12434703	3300006751	Marine	MSKKKGKTNLRLAALDEINQIDKRLKRFKNDEEKVTALMSKRNNLRNKLKTNK*
Ga0098048_12473843	3300006752	Marine	MSKRKERTNIKLGILDEINQIDKRIKRFKNDEEKVTTLTSKRKILTNKLKTKR*
Ga0098039_11263913	3300006753	Marine	MSKKKGKTNARLAVLNEINHTDKRLKRFKNNEEETAKLMSRRNLLRSKLKTK*
Ga0098044_10830265	3300006754	Marine	MSKKKGKTNLRLAALDEINQIDKRLKRFKNDEEKVTTLMSKRNNLRNKLKTNK*
Ga0098044_11043974	3300006754	Marine	MSRRKGRTNIKLGILDEINQIDKRIKRFKNDEEKVTTLTSKRKVLTSKLKTKR*
Ga0098044_12758591	3300006754	Marine	MSRRKGRTNVRLGILDEINQIDKRIKRFKNDEEKVTTLTSKRKILTNKLKTKR*
Ga0098044_12806792	3300006754	Marine	MSKKKGKTNLRLAALDEINQIDKRLKRFKNDEEKVTTLMSKRNNLRSKLKTKR*
Ga0098044_13878211	3300006754	Marine	MSRRKGRTNVRLGILDEINQIDKRIKRFKNDEEKVTALTSKRKVLTNKLKTKR*
Ga0098054_10553225	3300006789	Marine	MSKKKGKTNLRLAALDEINQIDKRLKRFKNDEEKVAALMSKRNNLRNKLKTNK*
Ga0098054_12033702	3300006789	Marine	MSKKKGKTNLRLAALDEINQIDKRLKRFKNNEEKVTALMSKRNNLRNKLKTNK*
Ga0098054_12991763	3300006789	Marine	MSKRKGNTNRKLEALNEINKIDKKLKKFNGKGILNEEADKLISKRDSLRARLKTKR*
Ga0098055_11145124	3300006793	Marine	MSRRKGKTNIRLATLDEINQIDKRLKRFKNDEEKVTALISKRNNLRNKLKTNK*
Ga0098055_11258642	3300006793	Marine	MSKRKGRTNIRLEMLNEINQIDKRLKRFKNNEEKVTTLTSRRNTLRSKLK*
Ga0098055_11658632	3300006793	Marine	MSRRKGRTNVRLGILDEINQIDKRIKRFKNDEEKVITLTSKRKVLTNKLKTKR*
Ga0098055_12309702	3300006793	Marine	MSKRKERTNVRLGILDEINQIDKRIKRFKNDEEKVTTLTSKRKVLTSKLKTKR*
Ga0098055_12825593	3300006793	Marine	MSRRKGKTNVRLAALDEINQIDKRLKRFKNDEEKVTALMSKRNNLRNKLKTNK*
Ga0098060_10172952	3300006921	Marine	MSRRKGKTNIRLAALDEINQIDKRLKRFKNDEEKVTSLISKRNNLRNKLKTNK*
Ga0098060_10446335	3300006921	Marine	MSRRKGRTNVRLAALDEINQIDKRLKRFKNDEEKVAALTSKRNNLRNKLKTNK*
Ga0098057_11824951	3300006926	Marine	KVKTNIRLSLLNEINQTDKRLKRFKNDEEKVTTLISKRNTLRNKLKTKR*
Ga0098034_10347295	3300006927	Marine	MSRRKERTNIKLGILDEINQIDKRIKRFKNDEEKVTTLTSKRKTLTNKLKTKR*
Ga0098034_11007965	3300006927	Marine	MSRRKGRTNIKLGILDEINQIDKRIKRFKNDEEKVTTLTSKRKVLTNKLK
Ga0098034_11386622	3300006927	Marine	MSKRKERTNIKLGILDEINQIDKRIKRFKNDEEKVTTLTSKRKVLTSKLKTKR*
Ga0098034_11807004	3300006927	Marine	MSKKKGKTNLRLAALDEINQIDKRLKRFKNNEEKVTALISKRNN
Ga0098036_12607353	3300006929	Marine	MSRRKGKTNIRLAALDEINQIDKRLKRFKNDEEKVTSLISKRNNLRNKLK
Ga0098046_10653835	3300006990	Marine	MSKKKGKTNLRLAALDEINQIDKRLKRFKNDEEKVTALMSKRNNLRNKLK
Ga0098046_10841042	3300006990	Marine	MSRRKGKTNIRLATLDEINQIDKRLKRFKNDEEKVAALTSKRNNLRNKLKTNK*
Ga0070747_11912693	3300007276	Aqueous	MSRRKGKTNVRLAALDEINQIDKRLKRFKNDEEKVTALMSKRNNLRNKLKTN
Ga0098052_10887721	3300008050	Marine	MSKKKEKTNRKLEMLNEINLIDKRLKRFKNDEEKITSLTSRRNTLRNQLKTNK*
Ga0098052_11959462	3300008050	Marine	MSRRKGRTNVRLGILDEINQIDKRIKRFKNDEEKVTTLTSKRKVLTSKLKTKR*
Ga0098052_12404123	3300008050	Marine	MSKRKERTNVKLGILDEINQIDKRIKRFKNDEEKVTTLTSKRKVL
Ga0098052_13965381	3300008050	Marine	KTNKKLRILNEINYIDIRLKKFNGKGRLNEEADKLISKRKTLTNKLKTKK*
Ga0114910_11136071	3300008220	Deep Ocean	MSRRKGRTNIKLGILDEINQIDKRLKRFKNDEEKVTTLTSKRKTLTNKLKTKR*
Ga0102887_11346591	3300008961	Estuarine	MSRRKGKTNVRLAALDEINQIDKRLKRFKNDEEKVTALMSKRNNLRSKLKTKR*
Ga0102886_11913532	3300009052	Estuarine	MSRRKGKTNIRLAALDEINQIDKRLKRFKNDEEKVTALMSKRNNLRSKLKTKR*
Ga0098049_11676672	3300010149	Marine	MSRRKGRTNVRLGILDEINQIDKRIKRFKNDEEKVTTLTSKRKVLTNKLKTKR*
Ga0098049_11971051	3300010149	Marine	MSRRKGRTNIKLGILDEINQIDKRIKRFKNNEEKVITLTSKRKLLTNKLKTKK*
Ga0098056_10884702	3300010150	Marine	MSKRKERTNVRLGILDEINQIDKRIKRFKNDEEKVTTLTSKRKVLTNKLKSKR*
Ga0098056_11052443	3300010150	Marine	MSKKKGKTNLRLAALDEINQIDKRLKRFKHDEEKVTTLMSKRNNLRSKLKTKR*
Ga0098061_11659373	3300010151	Marine	MSRRKERTNIKLGILDEINQIDKRIKRFKNDEEKVTTLTSKRKVLTNKLKTKR*
Ga0098059_10334872	3300010153	Marine	MSKKKEKTNRKLEILNEINLIDKRLKRFKNDEEKITSLTSRRNTLRNQLKTNK*
Ga0098059_11033793	3300010153	Marine	MSKRKERTNIKLGILDEINQIDKRLKRFKNNEEKVTTLTSKRNTLRNKLKTKR*
Ga0098059_13269351	3300010153	Marine	MSRRKGRTNVRLGILDEINQIDKRIKRFKNDEEKVTALTSKRKTLTNKLKTKR*
Ga0098059_13344431	3300010153	Marine	MSKKKGKTNLRLAALDEINQIDKRLKRFKNDEEKVATLISKRKTLTNKLKTKR*
Ga0098047_101859692	3300010155	Marine	MSRRKGRTNIKLGILDEINQIDKRIKRFKNDEEKVTTLTSKRKVLTNKLKTKR*
Ga0098047_102152241	3300010155	Marine	VRLGILDEINQIDKRIKRFKNDEEKVTTLTSKRKVLTNKLKTKR*
Ga0098047_103922023	3300010155	Marine	RTNIKLGILDEINQIDKRIKRFKNNEEKVTALVSKRNNLKNKLKTKR*
Ga0181374_10201533	3300017702	Marine	MSRRKGRTNIKLGILDEIHQIDKRLKKFNGRGRLNEEADKLISKRKVLTSKLKTKR
Ga0181374_10453141	3300017702	Marine	MSKKKGKTNLRLAMLDEINQIDKRLKRFKNDEEKVTALISKRNNLRNKLKTNK
Ga0181372_10574532	3300017705	Marine	MSKRKERTNVRLGILDEINQIDKRIKRFKNDEEKVTTLTSKRKVLTSKLKTKR
Ga0181375_10788552	3300017718	Marine	MSKKKGKTNLRLATLDEINQIDKRLKRFKNDEEKVTALISKRNNLRNKLKTNK
Ga0181416_10618282	3300017731	Seawater	MSRRKGKTNIKLGILDEINQIDKRLKRFKNDEEKVTTLTSKRKVLTNKLKTKR
Ga0187220_11820843	3300017768	Seawater	MSRRKGTTNIKLGILDEINQIDKRLKRFKNDEEKVTTLTSKRKVLTNKLKTKR
Ga0181425_12091573	3300017771	Seawater	MSRRKGKTNIRLAALDEINQIDKRLKRFKSDEEKVTALISKRNNLRNKLKTNK
Ga0181432_10746124	3300017775	Seawater	MSKKKERTNIKLGYLNEINYIDKRLKKFNGKGRLNEEADKLMSKRKVLTNKLKTKR
Ga0181432_11945701	3300017775	Seawater	TKMSRRKERTNIRLGILDEINQIDKRIKRFKNDEEKVTTLTSKRKVLTNKLKTKR
Ga0181432_12775823	3300017775	Seawater	MSRRKGRTNIKLGILDEINQIDKRIKRFKNNEEKVTTLTSKRKVLTSKLKTKK
Ga0181395_10746244	3300017779	Seawater	MSRRKGKTNIRLAALDEINQIDKRLKRFKNDEEKVTALISKRNNLRNKLKTNK
(restricted) Ga0233429_10350739	3300022902	Seawater	MSKKKGKTNLRLATLDEINQIDKRLKRFKNDEEKVTALISKRNNLRSKLKTKR
(restricted) Ga0255048_100764172	3300024518	Seawater	MSKKKGKTNIKLELLNELNSINKRLKRFKNDAEKCSSLISKRNNLRAKLKGS
Ga0208012_10128993	3300025066	Marine	MSKKKGKTNLRLATLDEINQIDKRLKRFKNDEEKVTALMSKRNNLRNKLKTNK
Ga0208012_10644432	3300025066	Marine	MSKRKERTNVKLGILDEINQIDKRIKRFKNDEEKVTTLTSKRKVLTSKLKTKR
Ga0208920_10689813	3300025072	Marine	MSKRKERTNVRLGILDEINQIDKRIKRFKNDEEKVTTLTSKRKTLTNKLKTKR
Ga0208668_10114508	3300025078	Marine	MSRRKGRTNVRLGILDEINQIDKRIKRFKNDEEKVTTLTSKRKVLTNKLKTKR
Ga0208792_10940872	3300025085	Marine	MSKRKERTNVRLGILDEINQIDKRIKRFKNDEEKVTTLTSKRKVLTNKLKTKR
Ga0208011_10218811	3300025096	Marine	MSKRKERTNVRLGILDEINQIDKRIKRFKNDEEKVTTLTSKRKVLTSKLKTKRXKNTIN
Ga0208011_10672332	3300025096	Marine	MSKRKERTNIKLGILDEINQIDKRIKRFKNDEEKVTTLTSKRKVLTSKLKTKR
Ga0208011_11321582	3300025096	Marine	MSKRKGRTNIKLGILNEINQIDKRLKKFNGRGRLNEEADNLISKRKVLTNKLKTKR
Ga0208011_11335701	3300025096	Marine	RRKGRTNVRLGILDEINQIDKRIKRFKNDEEKVTALTSKRKVLTNKLKTKR
Ga0208010_10146204	3300025097	Marine	MSKRKERTNVRLGILDEINQIDKRIKRFKNDEEKVITLTSKRKVLTNKLKTKR
Ga0208010_10843311	3300025097	Marine	KRKERTNVRLGILDEINQIDKRIKRFKNDEEKVTTLTSKRKTLTNKLKTKR
Ga0208010_11010991	3300025097	Marine	MSRRKERTNIKLGILDEINQIDKRIKRFKNDEEKVTTLTSKRKTLTNKLKTKRXVKVKNC
Ga0208434_10463915	3300025098	Marine	MSRRKGKTNIRLATLDEINQIDKRLKRFKNNEEKVAALMSKRNNLRNKLKTKR
Ga0208669_10054636	3300025099	Marine	MSRRKGKTNIRLAALDEINQIDKRLKRFKNDEEKVTSLISKRNNLRNKLKTNK
Ga0208669_10070318	3300025099	Marine	MSRRKGKTNIRLATLDEINQIDKRLKRFKNDEEKVTALISKRNNLRNKLKTNK
Ga0208793_11120104	3300025108	Marine	MSKKKGKTNLRLATLDEINQIDKRLKRFKNDEEKVAALMSKRNNLRNKLKTNK
Ga0208553_11381252	3300025109	Marine	VRLGILDEINQIDKRIKRFKNDEEKVTTLTSKRKVLTNKLKTKR
Ga0209349_11416321	3300025112	Marine	MSKRKGRTNIKLGILDKINQIDKRLKKFNGRGRLNEEADNLISKRKVLTSKLKTKK
Ga0208433_11022932	3300025114	Marine	MSKKKGKTNLRLATLDEINQIDKRLKRFKNDEEKVTTLMSKRNNLRSK
Ga0208790_11608692	3300025118	Marine	MSKKKGKTNLRLAALDEINQIDKRLKRFKNDEEKVTALMSKRNNLRNKLKTNK
Ga0209434_11932431	3300025122	Marine	MSKRKGRTNIKLGILDEINQIDKRIKRFKNDEEKVTTLTSKRKVLTSKLKTKR
Ga0209128_10840333	3300025131	Marine	MSRRKERTNIKLGILDEINQIDKRIKRFKNDEEKVTTLTSKRKVLTSKLKTKR
Ga0208134_10892082	3300025652	Aqueous	MSRRKGKTNVRLAALDEINQIDKRLKRFKNDEEKVTALMSKRNNLRNKLKTNK
(restricted) Ga0233415_103155671	3300027861	Seawater	MSRRKGRTNIKLGILDEINQIDKRLKRFKNDEEKVTTLISKRNN
(restricted) Ga0233413_100757603	3300027996	Seawater	MSKKKGKTNLRLATLDEINQIDKRLKRFKNDEEKVTALMSKRNNLRSKLKTKR

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters