Metagenome / Metatranscriptome Family F101289

Overview

Basic Information

• Family ID: F101289
• Family Type: Metagenome / Metatranscriptome
• Number of Sequences: 102
• Average Sequence Length: 48 residues
• Representative Sequence: IDTTVAVSARATHRDDARAFIRYLLRPESNKVWKPKGLERFE
• Number of Associated Samples: 92
• Number of Associated Scaffolds: 102

Quality Assessment

• Transcriptomic Evidence: Yes
• Most common taxonomic group: Unclassified
• % of genes with valid RBS motifs: 0.00 %
• % of genes near scaffold ends (potentially truncated): 0.00 %
• % of genes from short scaffolds (< 2000 bps): 0.00 %
• Associated GOLD sequencing projects: 89
• AlphaFold2 3D model prediction: Yes
• 3D model pTM-score: 0.40

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Most Common Taxonomy

• Group: Unclassified (100.000 % of family members)
• NCBI Taxonomy ID: N/A
• Taxonomy: N/A

Most Common Ecosystem

• GOLD Ecosystem: Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere (8.823 % of family members)
• Environment Ontology (ENVO): Unclassified (31.373 % of family members)
• Earth Microbiome Project Ontology (EMPO): Host-associated → Plant → Plant rhizosphere (45.098 % of family members)

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure

• Classification: Globular
• Signal Peptide: No
• Secondary Structure distribution:
  α-helix: 51.43%
  β-sheet: 0.00%
  Coil/Unstructured: 48.57%

Predicted 3D Structure

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 102 Family Scaffolds
PF07859	Abhydrolase_3	6.86
PF04229	GrpB	5.88
PF00903	Glyoxalase	2.94
PF01738	DLH	2.94
PF13180	PDZ_2	2.94
PF13360	PQQ_2	2.94
PF00027	cNMP_binding	1.96
PF00285	Citrate_synt	0.98
PF07586	HXXSHH	0.98
PF13271	DUF4062	0.98
PF02321	OEP	0.98
PF00480	ROK	0.98
PF04214	DUF411	0.98
PF02518	HATPase_c	0.98
PF13487	HD_5	0.98
PF13531	SBP_bac_11	0.98
PF07690	MFS_1	0.98
PF01070	FMN_dh	0.98
PF13442	Cytochrome_CBB3	0.98
PF02577	BFN_dom	0.98
PF06439	3keto-disac_hyd	0.98
PF01850	PIN	0.98
PF13420	Acetyltransf_4	0.98
PF12706	Lactamase_B_2	0.98
PF04972	BON	0.98
PF12770	CHAT	0.98
PF08309	LVIVD	0.98
PF13620	CarboxypepD_reg	0.98
PF00892	EamA	0.98
PF02775	TPP_enzyme_C	0.98
PF03795	YCII	0.98
PF01436	NHL	0.98
PF13616	Rotamase_3	0.98
PF01063	Aminotran_4	0.98
PF13564	DoxX_2	0.98

Neighboring Clusters of Orthologous Genes (COGs)

COG ID	Name	Functional Category	% Frequency in 102 Family Scaffolds
COG0657	Acetyl esterase/lipase	Lipid transport and metabolism [I]	6.86
COG2320	GrpB domain, predicted nucleotidyltransferase, UPF0157 family	General function prediction only [R]	5.88
COG0115	Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase	Amino acid transport and metabolism [E]	1.96
COG1538	Outer membrane protein TolC	Cell wall/membrane/envelope biogenesis [M]	1.96
COG1940	Sugar kinase of the NBD/HSP70 family, may contain an N-terminal HTH domain	Transcription [K]	1.96
COG0069	Glutamate synthase domain 2	Amino acid transport and metabolism [E]	0.98
COG0372	Citrate synthase	Energy production and conversion [C]	0.98
COG1259	Bifunctional DNase/RNase	General function prediction only [R]	0.98
COG1304	FMN-dependent dehydrogenase, includes L-lactate dehydrogenase and type II isopentenyl diphosphate isomerase	Energy production and conversion [C]	0.98
COG2350	YciI superfamily enzyme, includes 5-CHQ dehydrochlorinase, contains active-site pHis	Secondary metabolites biosynthesis, transport and catabolism [Q]	0.98
COG3019	Uncharacterized metal-binding protein, DUF411 family	Function unknown [S]	0.98
COG5276	Uncharacterized secreted protein, contains LVIVD repeats, choice-of-anchor domain	Function unknown [S]	0.98

Phylogeny

NCBI Taxonomy

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	100.00 %

Environmental Properties

Associated Habitat Types

Ecosystem

Habitat	Taxonomy	Distribution
Environmental	Environmental	67.65%
Host-Associated	Host-Associated	32.35%

Class

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	55.88%
Plants	Host-Associated → Plants	32.35%
Aquatic	Environmental → Aquatic	11.76%

Category

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	54.90%
Rhizosphere	Host-Associated → Plants → Rhizosphere	25.49%
Freshwater	Environmental → Aquatic → Freshwater	5.88%
Sediment	Environmental → Aquatic → Sediment	5.88%
Rhizoplane	Host-Associated → Plants → Rhizoplane	5.88%
Peat	Environmental → Terrestrial → Peat	0.98%
Roots	Host-Associated → Plants → Roots	0.98%

Type

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	47.06%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	19.61%
Loam	Environmental → Terrestrial → Soil → Loam	6.86%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	5.88%
Soil	Host-Associated → Plants → Rhizosphere → Soil	5.88%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	4.90%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	2.94%
Sediment	Environmental → Aquatic → Freshwater → Sediment	1.96%
Ice	Environmental → Aquatic → Freshwater → Ice	0.98%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.98%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	0.98%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.98%
Bulk Soil	Host-Associated → Plants → Roots → Bulk Soil	0.98%

Subtype

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	24.51%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	19.61%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	12.75%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	5.88%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	5.88%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	4.90%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	4.90%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	4.90%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	2.94%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	1.96%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	1.96%
Uranium Contaminated	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated	1.96%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	1.96%
Unclassified	Environmental → Aquatic → Freshwater → Ice → Unclassified	0.98%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.98%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.98%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	0.98%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.98%
Unclassified	Host-Associated → Plants → Roots → Bulk Soil → Unclassified	0.98%

Habitat

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	8.82%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	8.82%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	7.84%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	6.86%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	4.90%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	3.92%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	3.92%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	2.94%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	2.94%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	2.94%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.94%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	2.94%
Watersheds	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Watersheds	1.96%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	1.96%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	1.96%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.96%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	1.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	1.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil	1.96%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	1.96%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.96%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.96%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	1.96%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	0.98%
Polar Desert Sand	Environmental → Aquatic → Freshwater → Ice → Unclassified → Polar Desert Sand	0.98%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	0.98%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.98%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.98%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.98%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.98%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.98%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.98%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.98%
Bog	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog	0.98%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	0.98%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.98%
Populus Endosphere	Host-Associated → Plants → Roots → Bulk Soil → Unclassified → Populus Endosphere	0.98%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.98%
Rhizosphere Soil	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere Soil	0.98%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	0.98%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.98%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	0.98%

Associated Samples

Taxon OID	Sample Name	Habitat Type
3300000891	Soil microbial communities from Great Prairies - Wisconsin, Continuous corn soil	Environmental
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental
3300004080	Coassembly of ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental
3300004082	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3	Environmental
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental
3300005167	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121	Environmental
3300005178	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137	Environmental
3300005336	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG	Environmental
3300005338	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2	Host-Associated
3300005440	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG	Environmental
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental
3300005534	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen07_05102014_R1	Environmental
3300005538	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1	Environmental
3300005544	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG	Environmental
3300005546	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG	Environmental
3300005548	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG	Host-Associated
3300005563	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2	Host-Associated
3300005719	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2	Host-Associated
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental
3300006046	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101	Environmental
3300006052	Freshwater sediment microbial communities from North America - Little Laurel Run_MetaG_LLR_2013	Environmental
3300006353	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5	Host-Associated
3300006797	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108	Environmental
3300006800	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109	Environmental
3300006846	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4	Host-Associated
3300006847	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5	Host-Associated
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated
3300006914	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5	Host-Associated
3300007265	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1	Environmental
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental
3300009093	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG	Host-Associated
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated
3300009174	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG	Host-Associated
3300009545	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG	Host-Associated
3300009551	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG	Host-Associated
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated
3300010304	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09182015	Environmental
3300010336	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09082015	Environmental
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental
3300011441	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT513_2	Environmental
3300012043	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ601 (22.06)	Environmental
3300012212	Combined assembly of Hopland grassland soil	Host-Associated
3300012363	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG	Environmental
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated
3300012532	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_80_16 metaG	Environmental
3300012922	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG	Environmental
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental
3300012985	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MG	Environmental
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated
3300014168	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin17_10_metaG	Environmental
3300014968	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG	Host-Associated
3300015052	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (PacBio error correction)	Environmental
3300015372	Soil combined assembly	Host-Associated
3300018031	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_200_b1	Environmental
3300018054	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_b1	Environmental
3300018076	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60_coex	Environmental
3300018429	Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 T	Environmental
3300018431	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104	Environmental
3300018432	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 550 T	Environmental
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental
3300019885	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1m2	Environmental
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental
3300021861	Metatranscriptome of freshwater sediment microbial communities from post-fracked creek in Pennsylvania, United States - ABR_2016 (Metagenome Metatranscriptome)	Environmental
3300025914	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes)	Host-Associated
3300025941	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes)	Host-Associated
3300026142	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes)	Host-Associated
3300026532	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_153 (SPAdes)	Environmental
3300027651	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM3H0_M2 (SPAdes)	Environmental
3300027869	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1 (SPAdes)	Environmental
3300027903	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)	Environmental
3300028379	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes)	Host-Associated
3300028381	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes)	Host-Associated
3300028814	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_183	Environmental
3300028881	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_116	Environmental
3300029883	I_Bog_E2 coassembly	Environmental
3300031595	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG	Host-Associated
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental
3300031718	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05	Environmental
3300031847	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D4	Environmental
3300032074	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.P.R1	Environmental
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental
3300032828	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.4	Environmental
3300033407	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT140D175	Environmental
3300033417	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT142D155	Environmental
3300034819	Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_1	Host-Associated

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI10214J12806_106723012	3300000891	Soil	LPYKEIELVGPLPKELGAWIDTTVAVSARAMHREDAQAFIRYLLRPESNKVWKPKGLERFE*
JGI10216J12902_1143681692	3300000956	Soil	SRSTHADDARAFIQYMLRPESNKVWKPRGMERFE*
JGI10216J12902_1191423792	3300000956	Soil	PKEFGLWIDTMLAVSSRATHPDDAKALIRYLLRPESNKVWKPRGMERFE*
Ga0062385_100410613	3300004080	Bog Forest Soil	RELAAWIDMSAAVSSRGAHREDGLAFLKYLLRPESTTVWKTKGLDRFN*
Ga0062384_1006262181	3300004082	Bog Forest Soil	WIDMSAAVSSRGAHREDGLAFLKYLLRPESTTVWKTKGLDRFN*
Ga0062595_1008683241	3300004479	Soil	EIELVGPLPAELGAWIDSGVAVSARATHAADARALIQYLLRPESNKVWKPRGLERFE*
Ga0066672_108959491	3300005167	Soil	DMSTAVSARAMHRDDGLAFIKYLLRPESNTVWKTKGLERFN*
Ga0066688_105119541	3300005178	Soil	SQILPYKEIELVGPLPPELRAWLDLAFAVSTRAMHREDARSLMQYLLRPDSNNVWKPRGLERFE*
Ga0070680_1015570831	3300005336	Corn Rhizosphere	ILPYKQIELVGPLPRELGAWIDMATAISARAQHREDAAAFSKYLLTPESNTVWKTKGLERY*
Ga0068868_1024342332	3300005338	Miscanthus Rhizosphere	AWIDTTIAVSSRATHAEDARAFIKYLLRPESSKVWKPKGLERFE*
Ga0070705_1004713691	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	TTIAVSSRATHAEDARAFIKYLLRPESSKVWKPKGLERFE*
Ga0070707_1012100312	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	GPLPKELGAWIDTTIAVSARATHRDDALAYIRHLLRPESNKVWKPKGLERFE*
Ga0070735_105571061	3300005534	Surface Soil	AAWIDMSTAISARAEHRGDASAFSKYLLRPESNAVWKAKGLERFD*
Ga0070731_106159702	3300005538	Surface Soil	VSARTVHRDDAVAFVKYILRPEAKPIWQAKGLERFQ*
Ga0070686_1007760231	3300005544	Switchgrass Rhizosphere	YKEIELVGPLPAELGAWIDSGVAVSARATHAADARALIQYLLRPESNKVWKPRGLERFE*
Ga0070696_1002628282	3300005546	Corn, Switchgrass And Miscanthus Rhizosphere	AELGAWIDTGVAVSARAAHADDARAFIRYLLRPESNKVWKPRGLERFE*
Ga0070665_1018719031	3300005548	Switchgrass Rhizosphere	DSGVAVSARATHAEDARALIRYLLRPESNKVWKPRGLERFE*
Ga0068855_1014484102	3300005563	Corn Rhizosphere	LPRELGAWIDMATAISARAQHREDAAAFSKYLLTPESNTVWKTKGLERY*
Ga0068861_1020763981	3300005719	Switchgrass Rhizosphere	YKEIELVGPLPKELGAWIDTTVAVSARAMRREDARAFIQYLLRPESAKVWKPKGLERFE*
Ga0066903_1082012932	3300005764	Tropical Forest Soil	DMSAAVSARTTHRDDAAAFIKYILGAEATRIWKAKGLERFN*
Ga0066652_1008492001	3300006046	Soil	VSVRGEHRDAALAFIKYMLRPESDTVWKTKGLERFK*
Ga0075029_1005479271	3300006052	Watersheds	RELAAWIDMSTAVSARAEHRGDAAAFEKYLLRPESTTVWKAKGLERFN*
Ga0075029_1013378152	3300006052	Watersheds	LPRELGAWIDMSTAVSARAIHRDEAVAFLKYLVRPESNKWWKAKGLERFN*
Ga0075370_102419122	3300006353	Populus Endosphere	SSRATHPDDAKALIRYLLRPESNKVWKPRGMERFE*
Ga0066659_100398281	3300006797	Soil	IHPYKGRELVAPPPAELGAWIDTAVAVSARATHTDDARWFIRYLLRPESVAVWKPRGLERFE*
Ga0066660_113348691	3300006800	Soil	ELRAWLDLAFAVSTRAMHREDARSLMQYLLRPDSNNVWKPRGLERFE*
Ga0075430_1008320531	3300006846	Populus Rhizosphere	PAELGAWIDTTIAVSARATRPDDARALIRYLLRPESDKVWKPRGLERFQ*
Ga0075431_1002063401	3300006847	Populus Rhizosphere	SQILPYKEIELVGPLPKELGAWIDTMVAVSARATHPDDAKALIRHLLRPESNKVWKPRGLLRLE*
Ga0075433_113612051	3300006852	Populus Rhizosphere	GPLPAELGAWIDLAVAVSARATHADDARAFMRYLLRPESNNVWKPKGLERFE*
Ga0075434_1020485001	3300006871	Populus Rhizosphere	LTYTESQNRLPRELAAWIDMSTAVSARAAHRDDALAFIRYLLRPESDKVWQTKGLERFK*
Ga0075436_1002876262	3300006914	Populus Rhizosphere	ELGAWIDMSIAVSARAMHRGDALAFIRYLLRAESNAAWKAKGLERFN*
Ga0099794_104075382	3300007265	Vadose Zone Soil	IDTTVAVSARATHRDDVLAYIRHLLRPESNKVWKPKGLERFE*
Ga0066710_1043618832	3300009012	Grasslands Soil	VGPLPAELGAWIDSAVAVSARATHADDARALIRYLLRPESNGVWKPRGLERFQ
Ga0105240_104655683	3300009093	Corn Rhizosphere	AAWIDMSTAVSARAEHRSDAAAFEKYLLRPESTTVWKMKGLERFN*
Ga0114129_103112364	3300009147	Populus Rhizosphere	GPLPAELGAWIDLAVAVSARSTHADDARALIRYLLRPESNKVWKPRGLERFE*
Ga0114129_113295152	3300009147	Populus Rhizosphere	ELGVWIDSAVAVSARATHADDARALIRYLLRPESNKVWKPRGLERFE*
Ga0075423_126657711	3300009162	Populus Rhizosphere	IDRAVAVSARATHANDARAFIRYLLRPESNKVWKPRGLERFE*
Ga0075423_131387711	3300009162	Populus Rhizosphere	TIAVSTRAAHAEDARAFIKYLLRPESTKVWKPKGLERFE*
Ga0105241_113917991	3300009174	Corn Rhizosphere	AAWIDMSTAVSARAEHRGDAAAFEKYLLRPESNTAWKTKGLERFN*
Ga0105237_100415785	3300009545	Corn Rhizosphere	TAVSARAEHRADAAAFEKYLLRPESTTIWKTKGLERFN*
Ga0105238_100254165	3300009551	Corn Rhizosphere	GPLPRELGAWIDMATAISARAEHREDAAAFSKYLLTPESNTVWKTKGLERY*
Ga0105249_120699461	3300009553	Switchgrass Rhizosphere	LAAWIDMSTAVSARALHRDDALAFIKYLLRPESNTVWKAKGLERFN*
Ga0105249_126104591	3300009553	Switchgrass Rhizosphere	PYKEIELVGPLPKELGAWIDTTIAVSARATHPDDARAFIRYLLRPESNTVWKPKGLERFE
Ga0134088_103121501	3300010304	Grasslands Soil	TAVAVSARATHTDDARWLIRYLLRPESVAVWKPRGLERFE*
Ga0134088_103731531	3300010304	Grasslands Soil	SQILPYKEIELVGPLPAELGAWIDSAVAVSARATHAADASAFIRYLLRPESNKVWKPRGLERFE*
Ga0134071_101982763	3300010336	Grasslands Soil	ELVGPLPAELGAWIDAGIAVSARATHADDARALIRYLLRPESNKVWKPRGLERFE*
Ga0134127_125258041	3300010399	Terrestrial Soil	AELGAWIDSGIAVSTRATHAADARALIQYLLRPESNKVWKPRGLERFE*
Ga0134123_135836761	3300010403	Terrestrial Soil	ATGTTIAVSTRATHAEDARAFIKYLLRPESAKVWKPKGLERFE*
Ga0137452_12294531	3300011441	Soil	TMVAVSSRATHPDDARALIRYLLRPESNKVWKPRGMERFE*
Ga0136631_102024663	3300012043	Polar Desert Sand	GAWIDTTVAVSSRAAHPDDAKAFIRYLLRPESNKVWKPRGLERFE*
Ga0150985_1150520702	3300012212	Avena Fatua Rhizosphere	APLPRELAAWIDMSTAASARAMHRDDALAFIKYLPRPESDTAWKAKGLERFK*
Ga0137390_106933342	3300012363	Vadose Zone Soil	VSARAMHRDDARAFIKYLLRPESNAAWKAKGLERFN*
Ga0150984_1227512611	3300012469	Avena Fatua Rhizosphere	PYKEIELVGPLPAELKAWIDSGIAISIRTMRRDDARAFIQYLLRPDSNKVWKPKGLERFE
Ga0137373_107967211	3300012532	Vadose Zone Soil	KEIELVGPLPAELGAWIDSAVAVSARATHADDARAFIRYLLRPESNKVWKPKGLERFE*
Ga0137394_103772421	3300012922	Vadose Zone Soil	AWIDSAVAVSARATHADDARALIRYLLRPESNKVWKPRGLERFE*
Ga0137416_110953662	3300012927	Vadose Zone Soil	LPAELGAWIDSAVAVSARATHADDARAFIRYLLRPESNKVWKPRGLERFE*
Ga0137407_113186521	3300012930	Vadose Zone Soil	ELRAWIDSGVAVSARAAHPDDARAFIRYLLRPESNKVWKPKGLERFE*
Ga0126375_106097422	3300012948	Tropical Forest Soil	KEIELVGPLPAELGAWIDTAVAVSARATHADDARALIRYLLRPESNKVWKPRGLERFE*
Ga0126369_132889361	3300012971	Tropical Forest Soil	AWIDMSTAVSSRAMHREDALKFIRYLVRPESDGVWKAKGLERFK*
Ga0164308_113385531	3300012985	Soil	AWIDSGVAVSARATHAEDARALIRYLLRPESNKVWKPQGLERFE*
Ga0157378_110462433	3300013297	Miscanthus Rhizosphere	LPRELAAWIDMSTAVSARAEHRADAAAFEKYLLRPESTTVWKTKGLERFN*
Ga0157375_138158101	3300013308	Miscanthus Rhizosphere	KEIELVGPLPAELGAWIDSGIAVSTRATHAADARALIQYLLRPESNKVWKPRGLERFE*
Ga0181534_109503541	3300014168	Bog	ELIGPLPRELGAWIDMSTAVSARAMHRDDALAFIKYLLRPESNAAWKAKALERFN*
Ga0157379_105024123	3300014968	Switchgrass Rhizosphere	DMSTAVSARAEHRADAAAFEKYLLRPESTTIWKTKGLERFN*
Ga0137411_11994841	3300015052	Vadose Zone Soil	YKEIELVGPLPKALGAWIDTTVAVSARATHRDDALAYIRHLLRPESNKVWKPKGLERFE*
Ga0132256_1012906231	3300015372	Arabidopsis Rhizosphere	TMVAVSARATHPDDAKALIRYLLRPESNKVWKPRGLLRLE*
Ga0184634_101390852	3300018031	Groundwater Sediment	PKELGAWIDTMVAVPARATHPDDAKALIRYLLRPESNKVWKPRGLLRLE
Ga0184621_100896641	3300018054	Groundwater Sediment	GPLPKELGAWIDTTVAVSARATHRDDARAFIRYLLRPESNKVWKPKGLERFE
Ga0184609_104180481	3300018076	Groundwater Sediment	IDTTVAVSARATHRDDARAFIRYLLRPESNKVWKPKGLERFE
Ga0190272_130136282	3300018429	Soil	VSSRSTKPDDAKALIRYLLRPESNKVWKPRGMERFE
Ga0066655_100289723	3300018431	Grasslands Soil	ILPYKEIELVGPLPAELGAWIDTAVAVSARATHTDDARWFIRYLLRPESVAVWKPRGLERFE
Ga0190275_122582422	3300018432	Soil	SARAPHPDDARRFIQYLLRPESNKVWKPRGLERFE
Ga0066669_105691871	3300018482	Grasslands Soil	GPLPAELGAWIDSAVAVSARATHADDARAFIRYLLRPESNKVWKPRGLERFE
Ga0066669_111999341	3300018482	Grasslands Soil	IELVGPLPAELHAWIDSGIAVSARATHPDDARAFIRYVLRPESNKVWKPKGLERFE
Ga0193747_10345921	3300019885	Soil	IDLAVAVSARATHADDARALIRYLLRPESNKVWKPKGLERFE
Ga0210384_116281701	3300021432	Soil	WIDMSLAVSARAAHREDALAFLKYLLRPDSTAVWKSKGLERFN
Ga0213853_108829032	3300021861	Watersheds	LAAWIDMSTAVSVRAMHRDDALAFIKYLLRPESNAVWKAKGLERFN
Ga0213853_112991292	3300021861	Watersheds	GAWIDMSTAVSARAIHRDEAVAFLKYLVRPESNKWWKAKGLERFD
Ga0207671_105280211	3300025914	Corn Rhizosphere	TAVSARAEHRADAAAFEKYLLRPESTTIWKTKGLERFN
Ga0207711_115013372	3300025941	Switchgrass Rhizosphere	TIAVSARATHPDDARAFIRYLLRPESNTVWKPKGLERFE
Ga0207698_123237911	3300026142	Corn Rhizosphere	IDMSTAVSARATHREDAQAFIKYLLRPESNPVWKGKGLERFN
Ga0209160_11567142	3300026532	Soil	WIDTAVAVSARATHTDDARWFIRYLLRPESVAVWKPRGLERFE
Ga0209217_10930911	3300027651	Forest Soil	EIELVGPLPRELGAWIDSAIAVSARTTRRDDARAFMQYLLRPESNKVWKPKGLERFE
Ga0209579_104096691	3300027869	Surface Soil	VSARTVHRDDAVAFVKYILRPEAKPIWQAKGLERFQ
Ga0209488_106925433	3300027903	Vadose Zone Soil	ELRAWIDSGVAVSARATHADDARAFIRYLLRPESNTVWKPRGLERFE
Ga0268266_101639191	3300028379	Switchgrass Rhizosphere	RELAAWIDMSTAVSARAEHRADAAAFEKYLLRPESTTVWKTKGLERFN
Ga0268264_108117203	3300028381	Switchgrass Rhizosphere	ELAAWIDMSTAVSARAEHRADAAAFEKYLLRPESTTVWKTKGLERFN
Ga0307302_104350001	3300028814	Soil	AVSSRATHAEDARAFIKYLLRPESGKVWKPKGLERFE
Ga0307277_102173611	3300028881	Soil	DTTVAVSARATHREDARAFIRYILRPESNKVWKPKGLERFE
Ga0311327_105123971	3300029883	Bog	QAICEILPHKEIELVGTLPRELGAWIDMSTAVSARAMHRGDALAFIQHLLRPESNAVWKAKALERFH
Ga0265313_102276142	3300031595	Rhizosphere	ELAAWIDMSTAVSARAEHRGDAAAFEKYLLRSESTAVWKSKGLERFN
Ga0310686_1149453192	3300031708	Soil	AVSARTVHRDDAVAFVKYILRPEAKPIWQAKGLERFQ
Ga0307474_102625251	3300031718	Hardwood Forest Soil	WIDMSTAVSARTVHRDDAVAFVKYILRPEAKPIWQAKGLERFQ
Ga0307474_105150542	3300031718	Hardwood Forest Soil	APLPRELGAWIDMSVAVSARAMHRDDALSFIKYLLRPESNTAWKTKGLERFN
Ga0310907_104905971	3300031847	Soil	QTISQILPYKEIELVGPLPAELGAWIDSGIAVSDRATHADDARTLITYLLRPESNKVWKPRGLERFE
Ga0308173_121873472	3300032074	Soil	LPRELAAWIDMSTAVSARAMHRDDAQAFIRYLLRPESNPVWKGKGLERFN
Ga0307472_1008025822	3300032205	Hardwood Forest Soil	VGPLPPELGAWIDSGIAVSARTMRRDDARAFMQYLLRPESNKVWKPKGLERFE
Ga0307472_1018309771	3300032205	Hardwood Forest Soil	ELGVWIDSGVAVSARATHADDARALIRYLLRPESNKVWKPRGLERFE
Ga0335080_112868711	3300032828	Soil	RELAAWIDMSTAVSARAMHREDAAAFIRYLLRPESNSVWKTKGLERFP
Ga0214472_116571122	3300033407	Soil	LGAWIDMSTAVSARATHADDALAFIKYLLRPESNAVWKAKGLERFQ
Ga0214471_105021842	3300033417	Soil	STAVSARATHADDALAFIKYLLRPESNAVWKAKGLERFQ
Ga0373958_0062506_2_145	3300034819	Rhizosphere Soil	ELGAWIDSGIAVSARATHADDARALIKYLLRPESNKVWKPRGLERFE