NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome Family F101281

Metagenome Family F101281

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F101281
Family Type Metagenome
Number of Sequences 102
Average Sequence Length 44 residues
Representative Sequence VRQYVWLARSRPIRLLLLAWCLSYAGDLAAFTAASVYVYHVGGA
Number of Associated Samples 80
Number of Associated Scaffolds 102

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 100.00 %
% of genes near scaffold ends (potentially truncated) 6.86 %
% of genes from short scaffolds (< 2000 bps) 2.94 %
Associated GOLD sequencing projects 76
AlphaFold2 3D model prediction Yes
3D model pTM-score0.53

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (95.098 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil
(51.961 % of family members)
Environment Ontology (ENVO) Unclassified
(61.765 % of family members)
Earth Microbiome Project Ontology (EMPO) Unclassified
(51.961 % of family members)



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Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
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IDLabel
.2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68
1Ga0070706_1019722861
2Ga0070761_106454642
3Ga0070763_103277861
4Ga0066903_1056423082
5Ga0066903_1058122961
6Ga0066903_1071396491
7Ga0066903_1073391152
8Ga0075021_108333322
9Ga0099792_105190651
10Ga0116216_100478413
11Ga0126384_107939161
12Ga0126373_118897421
13Ga0126373_119785141
14Ga0126379_108237732
15Ga0126383_112655082
16Ga0137776_10808311
17Ga0126369_101034653
18Ga0126369_117228701
19Ga0164309_110774801
20Ga0164307_102996251
21Ga0164305_114625021
22Ga0182036_110653551
23Ga0182041_113642551
24Ga0182035_110901291
25Ga0182035_112907981
26Ga0182040_107588431
27Ga0187807_10990112
28Ga0187781_109294751
29Ga0187780_101242503
30Ga0187782_112489892
31Ga0187782_113600841
32Ga0187804_105431191
33Ga0187766_114299871
34Ga0187765_112206311
35Ga0210385_111130911
36Ga0210387_102455241
37Ga0126371_103635673
38Ga0126371_126278641
39Ga0207699_113694042
40Ga0209580_101606113
41Ga0209579_106881122
42Ga0209068_105466081
43Ga0318516_100592413
44Ga0318534_102711374
45Ga0318571_101190502
46Ga0318573_102775211
47Ga0318515_102256762
48Ga0318555_104544721
49Ga0318555_106190592
50Ga0318542_106514972
51Ga0318574_100212345
52Ga0318574_102683282
53Ga0318560_108228811
54Ga0310686_1179671621
55Ga0318496_100537943
56Ga0318493_101065381
57Ga0318493_102166851
58Ga0318493_107952321
59Ga0318500_100855523
60Ga0306918_101376461
61Ga0318502_100866591
62Ga0318492_101414272
63Ga0318494_105493621
64Ga0318554_105214162
65Ga0318526_104050351
66Ga0318521_108181202
67Ga0318547_101400341
68Ga0318552_100242851
69Ga0318552_105056231
70Ga0318548_100361715
71Ga0318503_102528712
72Ga0318557_102463521
73Ga0318523_102799221
74Ga0318565_100249005
75Ga0318497_102653342
76Ga0318567_100066547
77Ga0318567_102386102
78Ga0318567_106111552
79Ga0318499_100274584
80Ga0318499_100843121
81Ga0318499_104076851
82Ga0318517_104941812
83Ga0318511_100223264
84Ga0306921_104780781
85Ga0310909_112145171
86Ga0306926_116358222
87Ga0307479_110879971
88Ga0306922_112514621
89Ga0306922_116798601
90Ga0318562_101204362
91Ga0318562_101739191
92Ga0318559_101513482
93Ga0318559_101728061
94Ga0318556_105638261
95Ga0318570_105384492
96Ga0318575_106904602
97Ga0318524_100136071
98Ga0318524_104717301
99Ga0318553_102076011
100Ga0306920_1022166902
101Ga0306920_1023991732
102Ga0318519_108225341
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Transmembrane (alpha-helical) Signal Peptide: Yes Secondary Structure distribution: α-helix: 54.17%    β-sheet: 0.00%    Coil/Unstructured: 45.83%
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Variant

510152025303540VRQYVWLARSRPIRLLLLAWCLSYAGDLAAFTAASVYVYHVGGACytopl.Extracel.Sequenceα-helicesβ-strandsCoilSS Conf. scoreSignal PeptideTM segmentsTopol. domains
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.53
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains


Neighboring Clusters of Orthologous Genes (COGs)



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Phylogeny

NCBI Taxonomy

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All Organisms
Unclassified
4.9%95.1%
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Associated Scaffolds





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Environmental Properties

Associated Habitat Types

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Visualization
Freshwater Sediment
Sediment
Watersheds
Soil
Vadose Zone Soil
Tropical Forest Soil
Surface Soil
Peatlands Soil
Soil
Soil
Hardwood Forest Soil
Tropical Peatland
Tropical Forest Soil
Soil
Corn, Switchgrass And Miscanthus Rhizosphere
3.9%8.8%52.0%11.8%5.9%3.9%
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Associated Samples


Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
Ga0070706_10197228613300005467Corn, Switchgrass And Miscanthus RhizosphereMRQYMWLARSRPIRLLLLAWGISYAGDMAAFTVALVYLYDAGGAGYVGLLG
Ga0070761_1064546423300005591SoilMWLARCRPIRLLLLAWGITYAGDLAAFTVASVYLYRVGGAGYVGLLGLE
Ga0070763_1032778613300005610SoilMWLARSKPILLLLTAWALSYAGDLAAFTAASVYAY
Ga0066903_10564230823300005764Tropical Forest SoilVRQYVWLARSRPIRLLLIAWCLSYAGDLAAFTAASVYVYRVGGVAY
Ga0066903_10581229613300005764Tropical Forest SoilVSQYVWLARSRPIRLLLLACCLAYAGDLGAFTAASVYVFH
Ga0066903_10713964913300005764Tropical Forest SoilMRQYVWLAWSRPIRLLLLAWGISYAGDMAAFTVASVYLYGAGG
Ga0066903_10733911523300005764Tropical Forest SoilMWLARSKSILLLLMAWGLSYAGDLAAFTAASVYAFHVGGAGLVAV
Ga0075021_1083333223300006354WatershedsVSPQLAVRQYSWLGRSRPIRLLLVSWGLCYAGDLAAFTAASVYA
Ga0099792_1051906513300009143Vadose Zone SoilLRQYTWLARSKPILLLLIAWGLSYAGDLAAFTAAS
Ga0116216_1004784133300009698Peatlands SoilMWLARSRPIRLLLLAWGITYAADLAAFTVASVYLYRVGSAGYVGLLWLEYALFAAL
Ga0126384_1079391613300010046Tropical Forest SoilLALRPYIWLAHSKPILLLLMAWGLSYAGDLAAFTAASVYAFDAGGDG
Ga0126373_1188974213300010048Tropical Forest SoilVRQYAWLARSRPIRLLLVAWCFSYAGDLAAFTAASVYVYHVGGAAHV
Ga0126373_1197851413300010048Tropical Forest SoilMWLARSKPILLLLTAWGLSYAGDLAAFTAASVYAYR
Ga0126379_1082377323300010366Tropical Forest SoilMWLARSKPILLLLMAWGLSYAGDLAAFTAASVYAFDAGGAGLVA
Ga0126383_1126550823300010398Tropical Forest SoilLAVRQYVWLARSRPIRLLLLAWFLSYAGDLAAFTAASVYVYRVGGAAY
Ga0137776_108083113300010937SedimentMWLARSRPILLLLTAWGLSYAGDLAAFTAASVYAYRAG
Ga0126369_1010346533300012971Tropical Forest SoilVWLARSRPIRRLLLAWFLSYAGDLAAFTAASVYVYTAGGAA*
Ga0126369_1172287013300012971Tropical Forest SoilLRQYAWLAKSKSILLLLVAWGLSYAGDLAAFTAASVYAYRAGDEHR*
Ga0164309_1107748013300012984SoilMRQFMWLARSRPILLLLLAWGISYAGDMAAYTVASVYLYRAGGAGYVGL
Ga0164307_1029962513300012987SoilMRQYMWLARSRPILLLLLAWGISYAGDMAAYTVASVYLYRAGGAGYVG
Ga0164305_1146250213300012989SoilMRQFMWLARSRPILLLLLAWGISYAGDMAAYNVE*
Ga0182036_1106535513300016270SoilVRQYVWLARSRPIRRLLLAWFLSYAGDLAAFTAASV
Ga0182041_1136425513300016294SoilMWLARSKPILLLLTAWGMSYAGDLAAFTAGSVYAYRAGGAGLV
Ga0182035_1109012913300016341SoilLRQYLWLARSKPILLLLTAWCLSYAGDLAAFTAASVYAFRAG
Ga0182035_1129079813300016341SoilVRQYVWLARSRPIRLLLTAWFLSYAGDLAAFTAASVYVYHVGGAAYVGLLGL
Ga0182040_1075884313300016387SoilVWLARSRPIRLLLIAWCLSYAGDLAAFTAASVYVYRV
Ga0187807_109901123300017926Freshwater SedimentLRQYVWLARSRPIRLLLMAWGACYASDLAAFTAASVYA
Ga0187781_1092947513300017972Tropical PeatlandLRQYLWLVRGKPILLLLTAWGLSYAGDLAAFTAASVY
Ga0187780_1012425033300017973Tropical PeatlandMRQYIWLAHSRPMRHLLVACGVCYAGDLAAFTAASVYAYRAGGAGLVAVL
Ga0187782_1124898923300017975Tropical PeatlandVRQYIWLAHSKPIRRLLLAWFLCYAGDLAAFTAASV
Ga0187782_1136008413300017975Tropical PeatlandVRPYLWLARSRPIGLLLMAWGLSYAGDLAAFTAAS
Ga0187804_1054311913300018006Freshwater SedimentMMQYIWLARSRPMRHLLVAWCVCYAGDLAALTAASVYA
Ga0187766_1142998713300018058Tropical PeatlandVRHYTWLAASRPIRHLLLAWCVCYAGDLAAFTAASVYAFHAGGAG
Ga0187765_1122063113300018060Tropical PeatlandMRQYIWLARSRPVLLLLLAWGISYAGDMAAYTVASVYLYHAG
Ga0210385_1111309113300021402SoilMRQYIWLARSRPIRLLLLAWGITYAGDLAAFTVASVYLY
Ga0210387_1024552413300021405SoilLRQYAWLARSKPILLLLVAWGLSYAGDLAAFTAASVYAYRAGGAGLV
Ga0126371_1036356733300021560Tropical Forest SoilMWLARSKPILLLLTAWGLSYAGDLAAFTAASVYAYRAGG
Ga0126371_1262786413300021560Tropical Forest SoilVRQYVWLARSRPIRLLLLAWCLSYAGDLAAFTAASVYV
Ga0207699_1136940423300025906Corn, Switchgrass And Miscanthus RhizosphereMRQFMWLARSRPILLLLLAWGISYAGDMAAYTVASVYLYRAGGAGYVGLLG
Ga0209580_1016061133300027842Surface SoilMRQYMWLARSRPIRLLLLAWGITYAGDLAAFTVAS
Ga0209579_1068811223300027869Surface SoilMRQYMWLARSRPIRLLLLAWGITYAADLAAFTVASVYLYRVGS
Ga0209068_1054660813300027894WatershedsVSPQLAVRQFTWLGRSRPIRLLLVSWGLCYAGDLAAFTAASVYAYQAGGAG
Ga0318516_1005924133300031543SoilVRQYVWLARSRPIRLLLLAWFLSYAGDLAAFTAASVYVYAAGGAAYVGLLGLLKA
Ga0318534_1027113743300031544SoilVRQYVWLARSRPIRLLLLAWTLSNAGDLAAFTAASVYVYHAGGAAYVGLLGLLK
Ga0318571_1011905023300031549SoilVRQYVWLARSRPIRLLLIAWFLSYAGDLAAFTAASVYVYRVGGAAYV
Ga0318573_1027752113300031564SoilVRQYVWLARSRPIRRLLLAWFLSYAGDLAAFTAASVYVYTVGSALSSPS
Ga0318515_1022567623300031572SoilMRQYMWLARSRPILLLLLAWGISYAGDMAAYTVASVYLYHAGGAGYVGLLGVEWALSAAVLV
Ga0318555_1045447213300031640SoilVRQYVWLARSRPIRLLLLAWFLSYAGDLAAFTAASVYVYAAGGAAYVGLLGLL
Ga0318555_1061905923300031640SoilMRQYMWLARSRPILLLLLAWGISYAGDMAAYTVASVYLYHAGGAGYVGLLGVE
Ga0318542_1065149723300031668SoilVRHYIWLARNRPFRLLLVAWGVSYAGDLAAFTAASVYAY
Ga0318574_1002123453300031680SoilVRQYVWLARSRPIRRLLLAWFLSYAGDLAAFTAASVYVY
Ga0318574_1026832823300031680SoilMWLARSRPILLLLLAWGISYAGDMAAYTVASVYLYHAGGAGYV
Ga0318560_1082288113300031682SoilVRQYTWLAHSRPLRHLLVACLVCYAGDLAAFTAASVYAFHAGGAGL
Ga0310686_11796716213300031708SoilMRQYMWLARSRPILLLLLAWGISYAGDMAAYTVASVYLYRAGGAGYVGLLGLEWAL
Ga0318496_1005379433300031713SoilVRQYVWLARSRPIRRLLLAWFLSYAGDLAAFTAASVYVYTVGGGA
Ga0318493_1010653813300031723SoilVRQYVWLARSRPIRLLLIAWGLSYAGDLAAFTAASVYVYRVGGVAYVGLLG
Ga0318493_1021668513300031723SoilVRQYTWLAHSRPLRHLLVACLVCYAGDLAAFTAASVYAFHAGGA
Ga0318493_1079523213300031723SoilVRQYVWLARSRPIRLLLLAWCLSYAGDLAAVTAAAVYRYHVGGAA
Ga0318500_1008555233300031724SoilMRQYMWLARSRPILLLLLAWGISYAGDMAAYTVASVYLYHAGGAGYVGLLGVEWALSAAI
Ga0306918_1013764613300031744SoilVWLARSRPIRLLLIAWCLSYAGDLAAFTAASVYVYR
Ga0318502_1008665913300031747SoilVRQYVWLARSRPIRRLLLAWFLSYAGDLAAFTAASVYVYTVGGAAYVGLLGLLK
Ga0318492_1014142723300031748SoilVRQYVWLARSRPIRRLLLAWFLSYAGDLAAFTAASVYVYTVGGAAYVGLLGL
Ga0318494_1054936213300031751SoilVRHYLWLAHNGPIRLLLVAWGVSYAGDLAAFTAASVYAY
Ga0318554_1052141623300031765SoilMWLARSKPILLLLTAWGLSYAGDLAAFTAASVYAFRAGGAGLVA
Ga0318526_1040503513300031769SoilVRQYVWLARSRPIRRLLLAWFLSYAGDLAAFTAASVYVYTVGGAAYV
Ga0318521_1081812023300031770SoilVRQYTWLAHSRPLRHLLLACLVCYAGDLAAFTAASVYA
Ga0318547_1014003413300031781SoilVRHYLWLAHNGPIRLLLVAWGVSYAGDLAAFTAASVYAYHAGGAG
Ga0318552_1002428513300031782SoilVRQYVWLARSRPIRRLLLAWFLSYAGDLAAFTAASVYVYT
Ga0318552_1050562313300031782SoilVRHYIWLARNRPFRLLLVAWGVSYAGDLAAFTAASVYAYHAGG
Ga0318548_1003617153300031793SoilVWLARSRPIRLLLIAWCLSYAGDLAAFTAASVYVYRVGGVAYVGLLGLLKA
Ga0318503_1025287123300031794SoilLRQYLWLARSKPILLLLTAWGLSYAGDLAAFTAASVYAY
Ga0318557_1024635213300031795SoilVRQYVWLARSRPIRRLLLAWFLSYAGDLAAFTAASVYVYTVGGAAYVG
Ga0318523_1027992213300031798SoilVRQYVWLARSRPIRLLLVAWCLSYAGDLAAFTAASVYVYRVGGV
Ga0318565_1002490053300031799SoilVRQYVWLARSRPIRLLLLAWFLAYAGDLAAFTAASVYVYAVGGAAYVGLLG
Ga0318497_1026533423300031805SoilVWLARSRPIRLLLIAWCLSYAGDLAAFTAASVYVYRVGGVAY
Ga0318567_1000665473300031821SoilVRQYVWLARSRPIRLLLLAWFLAYAGDLAAFTAASVYVYAVGGAAYVGLLGLLK
Ga0318567_1023861023300031821SoilMWLARSKPILLLLTAWGLSYAGDLAAFTAASVYAYRAGGTGLVA
Ga0318567_1061115523300031821SoilVRQYVWLARSRPIRLLLLAWTLSNAGDLAAFTAASVYVYHAGGAAYVGLLG
Ga0318499_1002745843300031832SoilVRQYVWLARSRPIRLLLLAWFLAYAGDLAAFTAASVYVYAVGGAAYVGLLGLLKA
Ga0318499_1008431213300031832SoilLRQYLWLARSKPILLLLTAWCLSYAGDLAAFTAASVY
Ga0318499_1040768513300031832SoilVRHYLWLAHNRPIRLLLVAWGVSYAGDLAAFTAASVYAY
Ga0318517_1049418123300031835SoilMRQYMWLARSRPILLLLLAWGISYAGDMAAYTVASVYL
Ga0318511_1002232643300031845SoilVRQYVWLARSRPIRLLLLAWFLAYAGDLAAFTAASVYVYAVG
Ga0306921_1047807813300031912SoilVRQYVWLARSRPIRLLLLAWFLSYAGDLAAFTAASVYVYAAGGAAY
Ga0310909_1121451713300031947SoilVRQYVWLARSRPIRRLLLAWFLSYAGDLAAFTAASVYVYTVGGAAYVGL
Ga0306926_1163582223300031954SoilMWLARSKPILLLLTAWGLSYAGDLAAFTAASVYAYRAGGAG
Ga0307479_1108799713300031962Hardwood Forest SoilMRQYMWLARSRPILLLLLAWGISYAGDMAAYTVASVYLYRAG
Ga0306922_1125146213300032001SoilMRQYMWLARSRPILLLLLAWGISYAGDMAAYTVASVYLYH
Ga0306922_1167986013300032001SoilVRQYTWLAHSRPLRHLLLACLVCYAGDLAAFTAASVYAY
Ga0318562_1012043623300032008SoilVRQYVWLARSRPIRLLLIAWGLSYAGDLAAFTAASVYVYREGGVAYVGLR
Ga0318562_1017391913300032008SoilMRQYMWLARSRPILLLLLAWGISYAGDMAAYTVASVYLYHAGGAGYVGLLGVEWALS
Ga0318559_1015134823300032039SoilVRHYIWLARNRPIRLLLAAWGVSYAGDLAAFTAASVYA
Ga0318559_1017280613300032039SoilVRQYVWLARSRPIRRLLLAWFLSYAGDLAAFTAASVYVYTVGGE
Ga0318556_1056382613300032043SoilVRQYVWLARSRPIRLLLLAWCLSYAGDLAAFTAASVYVYHVGGA
Ga0318570_1053844923300032054SoilLRQYLWLARSKPILLLLTAWCLSYAGDLAAFTAASVYAF
Ga0318575_1069046023300032055SoilMWLARSKPILLLLTAWGMSYAGDLAAFTAGSVYAYRAGGAGLVA
Ga0318524_1001360713300032067SoilVRHYLWLAHNRPIRLLLVAWGVSYAGDLAAFTAASVYAYHAGGAGL
Ga0318524_1047173013300032067SoilVRHYLWLAHNGPIRLLLVAWGVSYAGDLAAFTAASVYTY
Ga0318553_1020760113300032068SoilVRQYVWLARSRPIRRLLLAWFLSYAGDLAAFTAASVYVYTVG
Ga0306920_10221669023300032261SoilMRQYMWLARSRPILLLLLAWGISYAGDMAAYTVASVYLYHAGGAGYVGVLGVEWALS
Ga0306920_10239917323300032261SoilVRHYIWLARNRPFRLLLVAWGVSYAGDLAAFTAASVYAYH
Ga0318519_1082253413300033290SoilMRQYMWLARSRPILLLLLAWGISYAGDMAAYTVASVYLY


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