NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F101215

Metagenome / Metatranscriptome Family F101215

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F101215
Family Type Metagenome / Metatranscriptome
Number of Sequences 102
Average Sequence Length 47 residues
Representative Sequence MAVTANKDIMRTDWYFSTPVYSIEKPEWLPSAIKATDKFIDEAYKRE
Number of Associated Samples 93
Number of Associated Scaffolds 102

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 95.10 %
% of genes near scaffold ends (potentially truncated) 93.14 %
% of genes from short scaffolds (< 2000 bps) 86.27 %
Associated GOLD sequencing projects 88
AlphaFold2 3D model prediction Yes
3D model pTM-score0.38

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (79.412 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Marine → Strait → Unclassified → Seawater
(21.569 % of family members)
Environment Ontology (ENVO) Unclassified
(62.745 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Saline → Water (saline)
(87.255 % of family members)



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Multiple Sequence Alignments

Select alignment to view:      


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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 25.33%    β-sheet: 0.00%    Coil/Unstructured: 74.67%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.38
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 102 Family Scaffolds
PF136402OG-FeII_Oxy_3 95.10
PF16724T4-gp15_tss 2.94
PF137592OG-FeII_Oxy_5 0.98



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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A79.41 %
All OrganismsrootAll Organisms20.59 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300000116|DelMOSpr2010_c10173824Not Available713Open in IMG/M
3300001941|GOS2219_1020729All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium1667Open in IMG/M
3300001948|GOS2228_1042000All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium1660Open in IMG/M
3300002145|S2t7BSb_10708057Not Available830Open in IMG/M
3300002231|KVRMV2_100676946All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium629Open in IMG/M
3300005914|Ga0075117_1023114All Organisms → cellular organisms → Bacteria2292Open in IMG/M
3300005933|Ga0075118_10221019Not Available605Open in IMG/M
3300006392|Ga0075507_1565514Not Available917Open in IMG/M
3300006405|Ga0075510_10015584All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae976Open in IMG/M
3300006735|Ga0098038_1264197Not Available541Open in IMG/M
3300006737|Ga0098037_1279474Not Available530Open in IMG/M
3300006752|Ga0098048_1188067Not Available611Open in IMG/M
3300006802|Ga0070749_10638908Not Available572Open in IMG/M
3300006929|Ga0098036_1081620Not Available996Open in IMG/M
3300007137|Ga0101673_1033733Not Available814Open in IMG/M
3300007960|Ga0099850_1328932Not Available575Open in IMG/M
3300009074|Ga0115549_1277602Not Available530Open in IMG/M
3300009077|Ga0115552_1164447Not Available925Open in IMG/M
3300009077|Ga0115552_1279381Not Available669Open in IMG/M
3300009438|Ga0115559_1150233Not Available867Open in IMG/M
3300009443|Ga0115557_1290530All Organisms → cellular organisms → Bacteria617Open in IMG/M
3300009472|Ga0115554_1155054Not Available946Open in IMG/M
3300009507|Ga0115572_10706183Not Available549Open in IMG/M
3300009550|Ga0115013_11384725Not Available522Open in IMG/M
3300009677|Ga0115104_11059992Not Available534Open in IMG/M
3300010318|Ga0136656_1025362All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae2154Open in IMG/M
3300012516|Ga0129325_1233832Not Available543Open in IMG/M
3300012520|Ga0129344_1176071Not Available953Open in IMG/M
3300012920|Ga0160423_10823875Not Available624Open in IMG/M
3300012928|Ga0163110_11156197Not Available621Open in IMG/M
3300012928|Ga0163110_11408309Not Available564Open in IMG/M
3300012967|Ga0129343_1123358Not Available856Open in IMG/M
(restricted) 3300013131|Ga0172373_10715109Not Available590Open in IMG/M
(restricted) 3300013132|Ga0172372_10360975Not Available1008Open in IMG/M
3300014042|Ga0117790_1016192Not Available1895Open in IMG/M
3300017706|Ga0181377_1010151All Organisms → cellular organisms → Bacteria2275Open in IMG/M
3300017708|Ga0181369_1033589All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae1200Open in IMG/M
3300017713|Ga0181391_1002811All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → Thetisvirus → Synechococcus virus SSM1 → Synechococcus phage S-SM14828Open in IMG/M
3300017713|Ga0181391_1052835Not Available955Open in IMG/M
3300017714|Ga0181412_1004592All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae4632Open in IMG/M
3300017727|Ga0181401_1085012Not Available819Open in IMG/M
3300017728|Ga0181419_1030937Not Available1458Open in IMG/M
3300017741|Ga0181421_1103968Not Available739Open in IMG/M
3300017746|Ga0181389_1111887Not Available746Open in IMG/M
3300017748|Ga0181393_1003791All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → Thetisvirus → Synechococcus virus SSM1 → Synechococcus phage S-SM15035Open in IMG/M
3300017748|Ga0181393_1105702Not Available722Open in IMG/M
3300017750|Ga0181405_1069759Not Available907Open in IMG/M
3300017756|Ga0181382_1145251Not Available621Open in IMG/M
3300017757|Ga0181420_1018812All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → Thetisvirus → Synechococcus virus SSM1 → Synechococcus phage S-SM12306Open in IMG/M
3300017757|Ga0181420_1091358Not Available943Open in IMG/M
3300017758|Ga0181409_1217020Not Available548Open in IMG/M
3300017760|Ga0181408_1136426Not Available633Open in IMG/M
3300017760|Ga0181408_1195865Not Available514Open in IMG/M
3300017762|Ga0181422_1021168Not Available2134Open in IMG/M
3300017768|Ga0187220_1005700Not Available3787Open in IMG/M
3300017769|Ga0187221_1019829All Organisms → Viruses → Predicted Viral2366Open in IMG/M
3300017776|Ga0181394_1133416Not Available779Open in IMG/M
3300017782|Ga0181380_1289741Not Available537Open in IMG/M
3300017951|Ga0181577_10580670Not Available693Open in IMG/M
3300017956|Ga0181580_10062827All Organisms → cellular organisms → Bacteria → Proteobacteria2783Open in IMG/M
3300017986|Ga0181569_10960823Not Available553Open in IMG/M
3300018415|Ga0181559_10199577Not Available1149Open in IMG/M
3300018416|Ga0181553_10273929Not Available948Open in IMG/M
3300018420|Ga0181563_10245596Not Available1069Open in IMG/M
3300018424|Ga0181591_11002628Not Available567Open in IMG/M
3300018428|Ga0181568_11123917Not Available593Open in IMG/M
3300019937|Ga0194022_1041571Not Available604Open in IMG/M
3300020183|Ga0194115_10024254All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae4545Open in IMG/M
3300020185|Ga0206131_10382713Not Available594Open in IMG/M
3300020194|Ga0181597_10239106Not Available850Open in IMG/M
3300020404|Ga0211659_10328022Not Available671Open in IMG/M
3300020470|Ga0211543_10200401Not Available988Open in IMG/M
3300020475|Ga0211541_10324792Not Available752Open in IMG/M
3300021093|Ga0194123_10511764Not Available531Open in IMG/M
3300021356|Ga0213858_10158377Not Available1105Open in IMG/M
3300021365|Ga0206123_10156075Not Available1042Open in IMG/M
3300021365|Ga0206123_10263088Not Available745Open in IMG/M
3300021371|Ga0213863_10423657Not Available534Open in IMG/M
3300021958|Ga0222718_10399229Not Available687Open in IMG/M
3300021959|Ga0222716_10122752All Organisms → cellular organisms → Bacteria → Proteobacteria1728Open in IMG/M
3300021960|Ga0222715_10106971All Organisms → Viruses → Predicted Viral1797Open in IMG/M
3300021960|Ga0222715_10136989Not Available1534Open in IMG/M
3300021962|Ga0222713_10288007All Organisms → Viruses1052Open in IMG/M
3300021964|Ga0222719_10419816Not Available826Open in IMG/M
3300022074|Ga0224906_1018917All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → Thetisvirus → Synechococcus virus SSM1 → Synechococcus phage S-SM12498Open in IMG/M
3300022176|Ga0212031_1031978Not Available855Open in IMG/M
3300022934|Ga0255781_10212907Not Available939Open in IMG/M
3300023170|Ga0255761_10412871Not Available664Open in IMG/M
3300023180|Ga0255768_10065337All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae2593Open in IMG/M
3300023296|Ga0222664_1058695Not Available611Open in IMG/M
3300025687|Ga0208019_1144190Not Available678Open in IMG/M
3300025690|Ga0209505_1118857Not Available731Open in IMG/M
3300025695|Ga0209653_1091910Not Available1004Open in IMG/M
3300025759|Ga0208899_1239850Not Available546Open in IMG/M
3300025849|Ga0209603_1322817Not Available531Open in IMG/M
3300025890|Ga0209631_10137433Not Available1338Open in IMG/M
3300025890|Ga0209631_10350808Not Available697Open in IMG/M
3300025892|Ga0209630_10143084Not Available1226Open in IMG/M
3300026183|Ga0209932_1138906Not Available512Open in IMG/M
3300026187|Ga0209929_1061793Not Available1035Open in IMG/M
3300029787|Ga0183757_1057232Not Available641Open in IMG/M
3300031785|Ga0310343_10925176Not Available658Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
SeawaterEnvironmental → Aquatic → Marine → Strait → Unclassified → Seawater21.57%
Salt MarshEnvironmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh11.76%
AqueousEnvironmental → Aquatic → Marine → Coastal → Unclassified → Aqueous9.80%
Pelagic MarineEnvironmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine8.82%
MarineEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine6.86%
Estuarine WaterEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water5.88%
MarineEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Marine4.90%
Surface SeawaterEnvironmental → Aquatic → Marine → Oceanic → Photic Zone → Surface Seawater2.94%
MarineEnvironmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine2.94%
SeawaterEnvironmental → Aquatic → Marine → Pelagic → Unclassified → Seawater2.94%
Pelagic MarineEnvironmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine2.94%
FreshwaterEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater1.96%
Freshwater LakeEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake1.96%
SeawaterEnvironmental → Aquatic → Marine → Coastal → Unclassified → Seawater1.96%
Pond WaterEnvironmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Pond Water1.96%
FreshwaterEnvironmental → Aquatic → Freshwater → River → Unclassified → Freshwater0.98%
SeawaterEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Seawater0.98%
Freshwater To Marine Saline GradientEnvironmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient0.98%
MarineEnvironmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine0.98%
Marine SedimentEnvironmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Sediment0.98%
Volcanic Co2 SeepsEnvironmental → Aquatic → Marine → Volcanic → Unclassified → Volcanic Co2 Seeps0.98%
Saline LakeEnvironmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake0.98%
Saline WaterEnvironmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water0.98%
Saline LakeEnvironmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake0.98%
MarineEnvironmental → Aquatic → Unclassified → Unclassified → Unclassified → Marine0.98%
Epidermal MucusHost-Associated → Fish → Skin → Epidermal Mucus → Unclassified → Epidermal Mucus0.98%

Visualization
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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OIDSample NameHabitat TypeIMG/M Link
3300000116Marine microbial communities from Delaware Coast, sample from Delaware MO Spring March 2010EnvironmentalOpen in IMG/M
3300001941Marine microbial communities from Browns Bank, Gulf of Maine - GS003EnvironmentalOpen in IMG/M
3300001948Marine microbial communities from Chesapeake Bay, Maryland, USA - GS012EnvironmentalOpen in IMG/M
3300002145S2t7BSb (114f)EnvironmentalOpen in IMG/M
3300002231Marine sediment microbial communities from Santorini caldera mats, Greece - red matEnvironmentalOpen in IMG/M
3300005914Saline lake microbial communities from Ace Lake, Antarctica - Antarctic Ace Lake Metagenome 02UKJEnvironmentalOpen in IMG/M
3300005933Saline lake microbial communities from Ace Lake, Antarctica - Antarctic Ace Lake Metagenome 02UKEEnvironmentalOpen in IMG/M
3300006392Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_N_<0.8_RNA2 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300006405Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_D_<0.8_RNA1 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300006735Marine viral communities from the Subarctic Pacific Ocean - 5B_ETSP_OMZ_AT15132_CsCl metaGEnvironmentalOpen in IMG/M
3300006737Marine viral communities from the Subarctic Pacific Ocean - 5_ETSP_OMZ_AT15132 metaGEnvironmentalOpen in IMG/M
3300006752Marine viral communities from the Subarctic Pacific Ocean - 13_ETSP_OMZ_AT15268 metaGEnvironmentalOpen in IMG/M
3300006802Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18EnvironmentalOpen in IMG/M
3300006929Marine viral communities from the Subarctic Pacific Ocean - 4_ETSP_OMZ_AT15127 metaGEnvironmentalOpen in IMG/M
3300007137Seawater microbiome, Papua New Guinea CO2 seep, Dobu 'control', water-dcEnvironmentalOpen in IMG/M
3300007960Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1D Viral MetaGEnvironmentalOpen in IMG/M
3300009074Pelagic marine microbial communities from North Sea - COGITO_mtgs_100430EnvironmentalOpen in IMG/M
3300009077Pelagic marine microbial communities from North Sea - COGITO_mtgs_110328EnvironmentalOpen in IMG/M
3300009438Pelagic marine microbial communities from North Sea - COGITO_mtgs_110506EnvironmentalOpen in IMG/M
3300009443Pelagic marine microbial communities from North Sea - COGITO_mtgs_110421EnvironmentalOpen in IMG/M
3300009472Pelagic marine microbial communities from North Sea - COGITO_mtgs_110404EnvironmentalOpen in IMG/M
3300009507Pelagic marine microbial communities from North Sea - COGITO_mtgs_120607EnvironmentalOpen in IMG/M
3300009550Marine eukaryotic phytoplankton communities from Atlantic Ocean - South Atlantic ANT15 MetagenomeEnvironmentalOpen in IMG/M
3300009677Marine eukaryotic communities from Pacific Ocean to study complex ecological interactions - CN13ID_70_C50_10m_0.8um Metatranscriptome (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300010318Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_15_0.8_DNAEnvironmentalOpen in IMG/M
3300012516Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Spr_15_0.2_RNA1 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300012520Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_15_0.2_RNA2 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300012920Marine microbial communities from the Costa Rica Dome - CRUD Field 142mm St8 metaGEnvironmentalOpen in IMG/M
3300012928Marine microbial communities from the Costa Rica Dome - CRUD Field 142mm St17 metaGEnvironmentalOpen in IMG/M
3300012967Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_15_0.2_RNA1 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300013131 (restricted)Freshwater microbial communities from Kabuno Bay, South-Kivu, Congo ? kab_092012_10mEnvironmentalOpen in IMG/M
3300013132 (restricted)Freshwater microbial communities from Kabuno Bay, South-Kivu, Congo ? kab_092012_9.5mEnvironmentalOpen in IMG/M
3300014042Epidermal mucus viral and microbial communities from European eel in Spain - Ebro delta (0.22 um filter)Host-AssociatedOpen in IMG/M
3300017706Marine viral communities from the Subarctic Pacific Ocean - Lowphox_13 viral metaGEnvironmentalOpen in IMG/M
3300017708Marine viral communities from the Subarctic Pacific Ocean - Lowphox_04 viral metaGEnvironmentalOpen in IMG/M
3300017713Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 14 SPOT_SRF_2010-08-11EnvironmentalOpen in IMG/M
3300017714Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 35 SPOT_SRF_2012-08-15EnvironmentalOpen in IMG/M
3300017727Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 24 SPOT_SRF_2011-07-20EnvironmentalOpen in IMG/M
3300017728Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 42 SPOT_SRF_2013-04-24EnvironmentalOpen in IMG/M
3300017741Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 44 SPOT_SRF_2013-06-19EnvironmentalOpen in IMG/M
3300017746Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 12 SPOT_SRF_2010-06-29EnvironmentalOpen in IMG/M
3300017748Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 16 SPOT_SRF_2010-10-21EnvironmentalOpen in IMG/M
3300017750Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 28 SPOT_SRF_2011-11-29EnvironmentalOpen in IMG/M
3300017756Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 5 SPOT_SRF_2009-10-22EnvironmentalOpen in IMG/M
3300017757Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 43 SPOT_SRF_2013-05-22EnvironmentalOpen in IMG/M
3300017758Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 32 SPOT_SRF_2012-05-30EnvironmentalOpen in IMG/M
3300017760Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 31 SPOT_SRF_2012-02-16EnvironmentalOpen in IMG/M
3300017762Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 45 SPOT_SRF_2013-07-18EnvironmentalOpen in IMG/M
3300017768Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 6 SPOT_SRF_2009-12-23 (version 2)EnvironmentalOpen in IMG/M
3300017769Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 5 SPOT_SRF_2009-10-22 (version 2)EnvironmentalOpen in IMG/M
3300017776Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 17 SPOT_SRF_2010-11-23EnvironmentalOpen in IMG/M
3300017782Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 3 SPOT_SRF_2009-08-19EnvironmentalOpen in IMG/M
3300017951Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101413BT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300017956Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071403BT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300017986Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101405AT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300018415Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011508AT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300018416Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011502XT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300018420Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011512CT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300018424Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071412AT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300018428Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101404AT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300019937Freshwater microbial communities from the Broadkill River, Lewes, Delaware, United States ? IW29Aug16_MGEnvironmentalOpen in IMG/M
3300020183Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015002 Mahale S4 surfaceEnvironmentalOpen in IMG/M
3300020185Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160517_1EnvironmentalOpen in IMG/M
3300020194Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041403US metaG (spades assembly)EnvironmentalOpen in IMG/M
3300020404Marine microbial communities from Tara Oceans - TARA_B100000900 (ERX555954-ERR598978)EnvironmentalOpen in IMG/M
3300020470Marine microbial communities from Tara Oceans - TARA_B100000287 (ERX555976-ERR599053)EnvironmentalOpen in IMG/M
3300020475Marine microbial communities from Tara Oceans - TARA_B100002029 (ERX555951-ERR599001)EnvironmentalOpen in IMG/M
3300021093Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015023 Mahale A surfaceEnvironmentalOpen in IMG/M
3300021356Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO245EnvironmentalOpen in IMG/M
3300021365Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160316_1EnvironmentalOpen in IMG/M
3300021371Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO497EnvironmentalOpen in IMG/M
3300021958Estuarine water microbial communities from San Francisco Bay, California, United States - C33_27DEnvironmentalOpen in IMG/M
3300021959Estuarine water microbial communities from San Francisco Bay, California, United States - C33_13DEnvironmentalOpen in IMG/M
3300021960Estuarine water microbial communities from San Francisco Bay, California, United States - C33_9DEnvironmentalOpen in IMG/M
3300021962Estuarine water microbial communities from San Francisco Bay, California, United States - C33_649DEnvironmentalOpen in IMG/M
3300021964Estuarine water microbial communities from San Francisco Bay, California, United States - C33_34DEnvironmentalOpen in IMG/M
3300022074Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 56 SPOT_SRF_2014-09-10 (v2)EnvironmentalOpen in IMG/M
3300022176Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1S Viral MetaG (v2)EnvironmentalOpen in IMG/M
3300022934Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101413BT metaGEnvironmentalOpen in IMG/M
3300023170Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071407BT metaGEnvironmentalOpen in IMG/M
3300023180Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071412AT metaGEnvironmentalOpen in IMG/M
3300023296Saline water microbial communities from Ace Lake, Antarctica - #604EnvironmentalOpen in IMG/M
3300025687Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1D Viral MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300025690Pelagic marine microbial communities from North Sea - COGITO_mtgs_110331 (SPAdes)EnvironmentalOpen in IMG/M
3300025695Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_116LU_22_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025759Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_24 (SPAdes)EnvironmentalOpen in IMG/M
3300025849Pelagic marine microbial communities from North Sea - COGITO_mtgs_120607 (SPAdes)EnvironmentalOpen in IMG/M
3300025890Pelagic Microbial community sample from North Sea - COGITO 998_met_08 (SPAdes)EnvironmentalOpen in IMG/M
3300025892Pelagic Microbial community sample from North Sea - COGITO 998_met_01 (SPAdes)EnvironmentalOpen in IMG/M
3300026183Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG SF2_B_H2O_MG (SPAdes)EnvironmentalOpen in IMG/M
3300026187Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG SF2_C_H2O_MG (SPAdes)EnvironmentalOpen in IMG/M
3300029787Marine viral communities collected during Tara Oceans survey from station TARA_018 - TARA_A100000172EnvironmentalOpen in IMG/M
3300031785Marine microbial communities from station ALOHA, North Pacific Subtropical Gyre - HC15-DNA-20-25_MGEnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
DelMOSpr2010_1017382423300000116MarineMTMNNKKETMQTDWYFSTPVYSIMKTEWLKPAIKATDKFIDESYKREAPN
GOS2219_102072923300001941MarineMTMNNKKETMQTDWYFSTPVYSIMKTEWLKPAIKATDKFIDESYKREAPNLKARKKF
GOS2228_104200013300001948MarineMAVMANKETLRTDWYFSTPVYSIEKPEWLPAALKATDKYIDEATKE
S2t7BSb_1070805723300002145MarineMAVMANKDTLRTDVYFSTPVYVIEKPEWLPNAIKATNKFIDQAY
KVRMV2_10067694623300002231Marine SedimentMAVTTNKEIMNTEWYFSTPIYSIMKPEWLQTAIKSTDKFIDEAYKREKPKLKERKKFLGN
Ga0075117_102311413300005914Saline LakeMTVSTNKDVMETHHYFSTPVYTIMKPEWLPSAIKATDKFIDESYKREKPK
Ga0075118_1022101913300005933Saline LakeMTVSTNKDVMETHHYFSTPVYTIMKPEWLPSAIKATDKFIDESYKREKPKLKARKK
Ga0075507_156551423300006392AqueousMTVFANKEILRTDWYFSTPVYSIEKPEWLKPAIKATDKFIDEAYKRE
Ga0075510_1001558413300006405AqueousMAVTANKDIMRTDWYFSTPVYSIDKPEWLPSAIKATDKFIDE
Ga0098038_126419713300006735MarineMKKDIMQTDWYFSTPVYSIMKPEWLKPAIKATDKFIDA
Ga0098037_127947413300006737MarineMAIKVKNQKEVMRTDYHFSTPIYTIEKPEWLLPAIKATDKYIK
Ga0098048_118806723300006752MarineMAVTTNKDIMQTDWYFSTPVYSIMKPEWLKPAIKATDKFIDAAYESQKPLLKERKKFLGNKD
Ga0070749_1063890813300006802AqueousMAVTANKDIMRTDWYFSTPVYSIEKPEWLPSAIKATDK
Ga0098036_108162013300006929MarineMTVTTNKEIMQTDWYFSTPVYSIMKTEWLKSAIKATDKFIDAAYE
Ga0101673_103373323300007137Volcanic Co2 SeepsMAVTTNKEIMNTEWYFSTPVYSIMKPKWLKPAIKATDKFIDAAYKREARLFRNNLED*
Ga0099850_132893223300007960AqueousMAVMTNKDTLRTDWYFGTPVYVIEKPEWLPSAIKATDKFITDAY
Ga0115549_127760213300009074Pelagic MarineMAVTTEKKEIMKTDWYFNTPVYLIEKPEWLPSAIKATDK
Ga0115552_116444723300009077Pelagic MarineMTVSTTKDVMETHHYFSTPVYTIMKPEWLPSAIKATDKFID
Ga0115552_127938123300009077Pelagic MarineMTVSTTKDLMETHHYFSTPVYTIMKPEWLPSAIKAT
Ga0115559_115023313300009438Pelagic MarineMTVSTTKDVMQTDHYFSTPVYTIMKPEWLPSAIKATDKFID
Ga0115557_129053023300009443Pelagic MarineMTVTTKKDVMQTDHYFSTPVYSIMKPEWLPSAIKATDKFIDEAYKRE*
Ga0115554_115505423300009472Pelagic MarineMTVTTKKDVMRTDWYFSTPVYSIEKPEWLAPAIKATDKFIDEAYKREAPKLKTSFVLLV*
Ga0115572_1070618313300009507Pelagic MarineVIGEKMTVTTNKEIMQTDWYFSTPVYSIMKTEWLKPAIKATDKFIDAAYKREA
Ga0115013_1138472513300009550MarineVIGEKMKKDIMQTDWYFSTPVYSIMKTEWLKPAIKATDKYID
Ga0115104_1105999223300009677MarineMTVTTNKEIMQTDWYFSTPVYSIMKTEWLKPAIKA
Ga0136656_102536213300010318Freshwater To Marine Saline GradientMTVTTAAKDVMRTDWYFSTPVYSIEKPEWLPSAIKATDKFIDE
Ga0129325_123383213300012516AqueousMAVTANKDLMRTDWYFSTPVYSIEKPEWLSAAIKATDK
Ga0129344_117607133300012520AqueousMAVTANKDIMRTDWYFSTPVYSIEKPEWLPSAIKA
Ga0160423_1082387513300012920Surface SeawaterMTTTKKEIMRTDMYFGTPVYSIEKPQWLPSAIKATDKYIKEAEKIQQPFLKERKKWLGNKDW
Ga0163110_1115619723300012928Surface SeawaterMKKETKMNDNKDIMDTSWFFQTPVYSIHKPEFLQSAIKATDKFIKQAEINQQSVLKERK
Ga0163110_1140830923300012928Surface SeawaterMSVTTNKDRINTEWYFSTPVYSIMKPEWLKPAIKATDK
Ga0129343_112335813300012967AqueousMAVTANKDIMRTDWYFSTPVYSIEKPEWLPSAIKATDKFIDEAYKREAPKQKE
(restricted) Ga0172373_1071510923300013131FreshwaterMTLIKNKETLITDWYFGTPVYIIEKPEWLPSAIKATDKFINEAYKIES
(restricted) Ga0172372_1036097533300013132FreshwaterMTLIKNKETLITDWYFGTPVYIIEKPEWLPSAIKATDKFINEAYKIESPKLKD
Ga0117790_101619253300014042Epidermal MucusMTVMANKDTLRTDWYFSTPVYSIEKPEWLPAALKATDKYIDEAYKREAPKLNTP*
Ga0181377_101015133300017706MarineMIKKEEMQTDWYFPTPVYSIMKTEWLKPAIKATDKFIE
Ga0181369_103358933300017708MarineMTVTTNKDIMQTDWYFSTPVYSIMKPEWLKPAIKATDKFIDQAYENQ
Ga0181391_100281113300017713SeawaterMKKEIMQTDWYFSTPVYSIMKTEWLKPAIKATDKFIDEAYKREAPKLKERKK
Ga0181391_105283533300017713SeawaterMTVKTNKEIMQTDCYFPTPVYSIMKTEWLKPAIKAT
Ga0181412_100459253300017714SeawaterMIKKEEMQTDWYFSTPVYSIMKTEWLKPAIKTTDKFIDAAYKRENPKLVK
Ga0181401_108501213300017727SeawaterMTVTSNKDIMQTDWYFSTPVYSIMKTEWLKPAIKATDKF
Ga0181419_103093733300017728SeawaterMTVTTSKEIMQTDWYFSTPVYSIMKTEWLKQVTKATDKFIDAAYKREAPKLKERKKLL
Ga0181421_110396823300017741SeawaterMASKIKSTKEVMNTDWYFSTPVYTIDKPEWLPSAIKTTDKFIKESEKTNQTTLK
Ga0181389_111188723300017746SeawaterMKKEIMQTDWYFSTSVYSIMKTEWLKPAIKATDKFIDIAYKR
Ga0181393_100379113300017748SeawaterMTVTSNKDIMQTDWYFPTPVYSIMKTEWLKPAIKATDKFIDEAYKRE
Ga0181393_110570213300017748SeawaterMTVTNKDIMQTEWYFPTPVYSIMKPEWLKSAIKATDKFIDAA
Ga0181405_106975913300017750SeawaterMTVTSNKDIMQTDWYFSTPVYSIMKTEWLKPAIKATDKFID
Ga0181382_114525123300017756SeawaterMTVTSNKDIMQTDWYFSTPVYSIMKTEWLKPAIKATDKFIDAAYKREAPKLKERKKFLGNKD
Ga0181420_101881233300017757SeawaterMTVTSNKDIMQTDWYFSTPVYSIMKTEWLKPAIKATDKFIDE
Ga0181420_109135823300017757SeawaterMKKDIMQTDWYFPTPVYSIMKTEWLKPATKATDKFIDEAYKREAPNLKERKKWLGNK
Ga0181409_121702023300017758SeawaterMKQDIMQTDWYFSTPVYSIMKTEWLKPAIKATDKFIDQAY
Ga0181408_113642623300017760SeawaterMTVTSNKDIMQTDWYFSTPVYSIMKTEWLKPAIKATDKFIDEAYKRE
Ga0181408_119586513300017760SeawaterMTVTVNKDIMQTDWYFSTPVYSIMKPEWLKPAIKATDKF
Ga0181422_102116833300017762SeawaterMKKDIMQTDWYFSTPVYSIMKTEWLKPAIKATDKFIDAAYKREAPELKERKKFL
Ga0187220_100570013300017768SeawaterMTVTNKDIMQTEWYFPTPVYSIMKPEWLKSAIKATDKFIDAAYKREAPKLKERKKFLGNKDY
Ga0187221_101982933300017769SeawaterMTVTSNKDIMQTDWYFSTPVYSIMKTEWLKPAIKATDKFIDAAYKREAPKLKERKKFL
Ga0181394_113341623300017776SeawaterVIGEKMKKDIMQTDWYFSTPVYSIMKIEWLNSAIKA
Ga0181380_128974113300017782SeawaterMTVKTNKEIMQTDWYFPTPVYSIMKTEWLKPAIKATDKFID
Ga0181577_1058067023300017951Salt MarshMAVTANKDIMKTDWYFSTPVYSIEKPEWLPSAIKATDKFIDEAYKREQPKLKE
Ga0181580_1006282753300017956Salt MarshMTVFANKEILRTDWYFSTPVYSIEKPEWLKPAIKATDKFIDEAYKREQPKLKE
Ga0181569_1096082323300017986Salt MarshMKKKMAVTTNKEIMNTEWYFQTPIYSIMKTDWLKNAIKAT
Ga0181559_1019957713300018415Salt MarshMAVTANKDIMKTDWYFSTPVYSIEKPEWLPSAIKATDKFIDE
Ga0181553_1027392923300018416Salt MarshMTVTTNKEIMQTDWYFSTPVYSIMKTEWLKSAIKATDKFIDEAYKRE
Ga0181563_1024559633300018420Salt MarshMTVKTKDGKDILDTSWYFGTPVYSIMKPEWLKPAIKATDKFIDEAYK
Ga0181591_1100262823300018424Salt MarshMAVTTTNKDIMNTSWYFSTPVYSIEKPEWLPSAIKATDKFIKEAEKMNQPKLKERKSG
Ga0181568_1112391723300018428Salt MarshMAVTTNKDVMKTEWYFSTPMYSIMKPEWLKPAIKATDKFIDAAYKREAPKLK
Ga0194022_104157113300019937FreshwaterMAVTANKDIMRTDWYFSTPVYSIEKPEWLPSAIKATDKFIDEAYKRE
Ga0194115_1002425453300020183Freshwater LakeMNITTNRDTLKTDIYFGSPVYTIEKPEWLPSAIKATDKFIAEAYKREAPKLKER
Ga0206131_1038271323300020185SeawaterMAITANKDVMRTDWYFSTPVYSIEKPEWLAPAIKAT
Ga0181597_1023910613300020194Salt MarshMAVTANKDIMKTDWYFSTPVYSIEKPEWLPSAIKATDKFIDEAYKREQPKLK
Ga0211659_1032802223300020404MarineMKKDIMQTDWYFSTPVYSIMKTEWLKPAIKATDKFIDAAYKREAPKLKER
Ga0211543_1020040123300020470MarineMTVKTKDGKDILDTSWYFGTPVYSTMKPEWLKPAIKATDKFIDEAYKREAPKLKERKKLLGN
Ga0211541_1032479213300020475MarineMKKDIMQTDWHFSTPVYSIMKTEWLKSAIKATDKFIDEAYKREAPKLKERKKVLGNK
Ga0194123_1051176423300021093Freshwater LakeMTNRDTLKTDVYFGSPIYTIEKPEWLPSAIKATDKFITEAYKREAPKLKERE
Ga0213858_1015837713300021356SeawaterMMKKEQMQTDWYFSTPVYSIMKTEWLKSAIKTTDKFIDEAYKREQKA
Ga0206123_1015607533300021365SeawaterMTVSTTKDVMETHHYFSTPVYTIMKPEWLPSAIKATDKFIDQAYK
Ga0206123_1026308813300021365SeawaterMTVTTNKEIMQTDWYFSTPVYSIMKTEWLKPAIKATDKFIDAAYKREAPKLKERKK
Ga0213863_1042365713300021371SeawaterMAVTANKDIMRTDWYFSTPVYSIEKPEWLPSAIKATDKF
Ga0222718_1039922913300021958Estuarine WaterMAVTTNKDVMRTDWYFSTPVYSIEKPEWLPSAIKATDKFIDEAYKREQPK
Ga0222716_1012275213300021959Estuarine WaterMTVFANKETLRTDWYFSTPIYSIEKPEWLKPAIKATDKFIDEAYKREQPKLKE
Ga0222715_1010697143300021960Estuarine WaterMTVMANKDTLRTDWYFSTPVYSIEKPEWLPAALKATDKYIDEAYKREAPK
Ga0222715_1013698933300021960Estuarine WaterMAVMANKDIMRTDWYFSTPVYSIEKPEWLPAAIKATDKY
Ga0222713_1028800713300021962Estuarine WaterMTVMANKDTLRTDWYFSTPVYSIEKPEWLPAALKATDKYIDEAYKR
Ga0222719_1041981613300021964Estuarine WaterMAVTANKDIMRTDWYFSTPVYSIEKPEWLPSAIKATDKFIDEAYKREQPKL
Ga0224906_101891713300022074SeawaterMKKDIMQTDWYFSTPVYSIMKTEWLKPAIKATDKFIDEAYKRDAPKLKERKKFLGN
Ga0212031_103197823300022176AqueousMAVMANKDIMRTDWYFSTPVYSIEKPEWLPAAIKATDK
Ga0255781_1021290723300022934Salt MarshMTVKTKDGKDILDTSWYFGTPVYSIMKPEWLKPAIKATDKFIDEAYKM
Ga0255761_1041287123300023170Salt MarshMAVTANKDIMKTDWYFSTPVYSIEKPEWLPSAIKATD
Ga0255768_1006533713300023180Salt MarshMAVTANKDIMRTDWYFSTPVYSIEKPEWLPSAIKAT
Ga0222664_105869513300023296Saline WaterMTVSTNKDVMETHHYFSTPVYTIMKPEWLPSAIKATDKFIDESYKREKPKLKARKKFLGNKDYL
Ga0208019_114419023300025687AqueousMAVMANKEILRTDWYFSTPVYRIEKPEWLPSAIKATD
Ga0209505_111885713300025690Pelagic MarineMTVSTTKDVMETHHYFSTPVYTIMKPEWLPSAIKATDKF
Ga0209653_109191033300025695MarineMAVTANKDVMRTDWYFSTPVYSIEKPEWLPSAIKATDKF
Ga0208899_123985023300025759AqueousMTVMANKETLRTDWYFSTPVYSIEKPEWLPAALKATDKYIDEAYKREAPKL
Ga0209603_132281713300025849Pelagic MarineMTVTTNKEIMQTDWYFSTPVYSIMKTEWLKPAIKATDKFIDA
Ga0209631_1013743333300025890Pelagic MarineMTVSTTKDLMETHHYFSTPVYTIMKPEWLPSAIKATDKFIDQAYKREKPKLK
Ga0209631_1035080813300025890Pelagic MarineMTVSTTKDVMETHHYFSTPVYTIMKPEWLPSAIKATDKFIDQAYKREKPKLK
Ga0209630_1014308433300025892Pelagic MarineMAVATAKKEIMKTDWYFNTPVYLIEKPEWLPSAIKATD
Ga0209932_113890613300026183Pond WaterMAVTANKDIMKTDWYFSTPVYSIEKPEWLAPAIKATDKFIDQA
Ga0209929_106179313300026187Pond WaterMTVFANKETLRTDWYFSTPVYSIEKPEWLKPAIKA
Ga0183757_105723223300029787MarineMNKKEIMKTEWHFSTPIYTIDKPEWLPSAIKATDKFIKDS
Ga0310343_1092517613300031785SeawaterMAVTTNKEIMNTNWIFQTPVYSIMKPEWLQSAIKSTDKFIDEAYKREKPRLKERKKFLGNKD


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