Metagenome / Metatranscriptome Family F101203

Basic Information
Family ID	F101203
Family Type	Metagenome / Metatranscriptome
Number of Sequences	102
Average Sequence Length	72 residues
Representative Sequence	MKTPMQELLEWVRATLPMDLETPQMIEEKIESMLEREKEVMQDFATDYERECRINLERSIEKCWDETFNTKER
Number of Associated Samples	59
Number of Associated Scaffolds	102

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	5.26 %
% of genes near scaffold ends (potentially truncated)	4.90 %
% of genes from short scaffolds (< 2000 bps)	11.76 %
Associated GOLD sequencing projects	41
AlphaFold2 3D model prediction	No

Most Common Taxonomy
Group	Unclassified (89.216 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous (73.529 % of family members)
Environment Ontology (ENVO)	Unclassified (87.255 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline) (92.157 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 82.19% β-sheet: 0.00% Coil/Unstructured: 17.81%
Feature Viewer

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Pfam ID	Name	% Frequency in 102 Family Scaffolds
PF13392	HNH_3	6.86
PF12684	DUF3799	4.90
PF01844	HNH	2.94
PF13455	MUG113	1.96
PF13481	AAA_25	0.98
PF10544	T5orf172	0.98
PF12844	HTH_19	0.98
PF00270	DEAD	0.98
PF14743	DNA_ligase_OB_2	0.98
PF01068	DNA_ligase_A_M	0.98
PF07463	NUMOD4	0.98
PF00271	Helicase_C	0.98
PF13640	2OG-FeII_Oxy_3	0.98
PF09588	YqaJ	0.98

COG ID	Name	Functional Category	% Frequency in 102 Family Scaffolds
COG1423	ATP-dependent RNA circularization protein, DNA/RNA ligase (PAB1020) family	Replication, recombination and repair [L]	0.98
COG1793	ATP-dependent DNA ligase	Replication, recombination and repair [L]	0.98

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	89.22 %
All Organisms	root	All Organisms	10.78 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	89.22 %
Viruses	superkingdom	All Organisms → Viruses	8.82 %
cellular organisms	root	All Organisms → cellular organisms	1.96 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	89.22 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	6.86 %
Duplodnaviria	clade	All Organisms → Viruses → Duplodnaviria	1.96 %
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	0.98 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	89.22 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	6.86 %
Heunggongvirae	kingdom	All Organisms → Viruses → Duplodnaviria → Heunggongvirae	1.96 %
Euryarchaeota	phylum	All Organisms → cellular organisms → Archaea → Euryarchaeota	0.98 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	89.22 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	6.86 %
Uroviricota	phylum	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota	1.96 %
unclassified Euryarchaeota	no rank	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota	0.98 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	89.22 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	6.86 %
Caudoviricetes	class	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1.96 %
Euryarchaeota archaeon	species	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	0.98 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	89.22 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	6.86 %
Caudovirales	order	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales	0.98 %
environmental samples	no rank	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples	0.98 %
Parvibaculaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Parvibaculaceae	0.98 %
Euryarchaeota archaeon	species	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	89.22 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	6.86 %
Parvibaculum	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Parvibaculaceae → Parvibaculum	0.98 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	0.98 %
Caudovirales	order	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales	0.98 %
Euryarchaeota archaeon	species	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	89.22 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	6.86 %
unclassified Parvibaculum	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Parvibaculaceae → Parvibaculum → unclassified Parvibaculum	0.98 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	0.98 %
Caudovirales	order	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales	0.98 %
Euryarchaeota archaeon	species	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	89.22 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	6.86 %
Parvibaculum sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Parvibaculaceae → Parvibaculum → unclassified Parvibaculum → Parvibaculum sp.	0.98 %
uncultured Caudovirales phage	species	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	0.98 %
Caudovirales	order	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales	0.98 %
Euryarchaeota archaeon	species	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	0.98 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000116\|DelMOSpr2010_c10162772	Not Available	751	Open in IMG/M
3300000117\|DelMOWin2010_c10011777	All Organisms → Viruses → Predicted Viral	4899	Open in IMG/M
3300006025\|Ga0075474_10015145	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Parvibaculaceae → Parvibaculum → unclassified Parvibaculum → Parvibaculum sp.	2868	Open in IMG/M
3300006026\|Ga0075478_10038438	All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon	1585	Open in IMG/M
3300006026\|Ga0075478_10178522	Not Available	654	Open in IMG/M
3300006737\|Ga0098037_1049321	All Organisms → Viruses → Predicted Viral	1518	Open in IMG/M
3300007344\|Ga0070745_1343508	Not Available	525	Open in IMG/M
3300007539\|Ga0099849_1174085	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	822	Open in IMG/M
3300010300\|Ga0129351_1175955	Not Available	837	Open in IMG/M
3300010389\|Ga0136549_10005828	Not Available	8735	Open in IMG/M
3300020185\|Ga0206131_10334459	Not Available	660	Open in IMG/M
3300020385\|Ga0211677_10056038	All Organisms → Viruses → Predicted Viral	1801	Open in IMG/M
3300022187\|Ga0196899_1007216	All Organisms → Viruses → Predicted Viral	4573	Open in IMG/M
3300024236\|Ga0228655_1030995	All Organisms → Viruses → Predicted Viral	1289	Open in IMG/M
3300025610\|Ga0208149_1003703	Not Available	5185	Open in IMG/M
3300025769\|Ga0208767_1075462	All Organisms → Viruses → Predicted Viral	1441	Open in IMG/M
3300026479\|Ga0228622_1008066	All Organisms → Viruses → Predicted Viral	3499	Open in IMG/M
3300027833\|Ga0209092_10000002	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales	235874	Open in IMG/M
3300034375\|Ga0348336_202308	Not Available	528	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	100.00%

Habitat	Taxonomy	Distribution
Marine	Environmental → Aquatic → Marine	98.04%
Freshwater	Environmental → Aquatic → Freshwater	0.98%
Sediment	Environmental → Aquatic → Sediment	0.98%

Habitat	Taxonomy	Distribution
Coastal	Environmental → Aquatic → Marine → Coastal	87.25%
Oceanic	Environmental → Aquatic → Marine → Oceanic	3.92%
Neritic Zone	Environmental → Aquatic → Marine → Neritic Zone	3.92%
River	Environmental → Aquatic → Freshwater → River	0.98%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	0.98%
Unclassified	Environmental → Aquatic → Marine → Unclassified	0.98%
Pelagic	Environmental → Aquatic → Marine → Pelagic	0.98%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.98%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Aquatic → Marine → Coastal → Unclassified	84.31%
Unclassified	Environmental → Aquatic → Marine → Oceanic → Unclassified	3.92%
Unclassified	Environmental → Aquatic → Marine → Neritic Zone → Unclassified	3.92%
Sediment	Environmental → Aquatic → Marine → Coastal → Sediment	2.94%
Unclassified	Environmental → Aquatic → Freshwater → River → Unclassified	0.98%
Estuary	Environmental → Aquatic → Marine → Intertidal Zone → Estuary	0.98%
Unclassified	Environmental → Aquatic → Marine → Unclassified → Unclassified	0.98%
Unclassified	Environmental → Aquatic → Marine → Pelagic → Unclassified	0.98%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.98%

Habitat	Taxonomy	Distribution
Aqueous	Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous	73.53%
Seawater	Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater	5.88%
Freshwater To Marine Saline Gradient	Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient	4.90%
Marine	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine	3.92%
Marine	Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine	3.92%
Microbial Mat	Environmental → Aquatic → Marine → Coastal → Sediment → Microbial Mat	2.94%
Freshwater	Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater	0.98%
Estuarine	Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine	0.98%
Marine	Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine	0.98%
Seawater	Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater	0.98%
Marine Methane Seep Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Marine Methane Seep Sediment	0.98%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000116	Marine microbial communities from Delaware Coast, sample from Delaware MO Spring March 2010	Environmental	Open in IMG/M
3300000117	Marine microbial communities from Delaware Coast, sample from Delaware MO Winter December 2010	Environmental	Open in IMG/M
3300006025	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_D_<0.8_DNA	Environmental	Open in IMG/M
3300006026	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_D_<0.8_DNA	Environmental	Open in IMG/M
3300006404	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_N_<0.8_RNA2 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006637	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_15_>0.8_DNA	Environmental	Open in IMG/M
3300006737	Marine viral communities from the Subarctic Pacific Ocean - 5_ETSP_OMZ_AT15132 metaG	Environmental	Open in IMG/M
3300006802	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18	Environmental	Open in IMG/M
3300006810	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Sep_01	Environmental	Open in IMG/M
3300006867	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_N_<0.8_DNA	Environmental	Open in IMG/M
3300006868	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_N_>0.8_DNA	Environmental	Open in IMG/M
3300006869	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_N_>0.8_DNA	Environmental	Open in IMG/M
3300006870	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_D_>0.8_DNA	Environmental	Open in IMG/M
3300006874	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_D_>0.8_DNA	Environmental	Open in IMG/M
3300006916	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_24	Environmental	Open in IMG/M
3300006919	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_21	Environmental	Open in IMG/M
3300006922	Marine viral communities from the Subarctic Pacific Ocean - 11_ETSP_OMZ_AT15265 metaG	Environmental	Open in IMG/M
3300007234	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_15_<0.8_DNA	Environmental	Open in IMG/M
3300007344	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_4	Environmental	Open in IMG/M
3300007345	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_30	Environmental	Open in IMG/M
3300007346	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_31	Environmental	Open in IMG/M
3300007539	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1M Viral MetaG	Environmental	Open in IMG/M
3300007542	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_1 Viral MetaG	Environmental	Open in IMG/M
3300007640	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_28	Environmental	Open in IMG/M
3300008012	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_N_<0.8_DNA	Environmental	Open in IMG/M
3300010297	Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_20_0.8_DNA	Environmental	Open in IMG/M
3300010299	Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_15_0.2_DNA	Environmental	Open in IMG/M
3300010300	Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_27_0.2_DNA	Environmental	Open in IMG/M
3300010389	Marine sediment microbial communities from methane seeps within Baltimore Canyon, US Atlantic Margin - Baltimore Canyon MUC-11 12-14 cmbsf	Environmental	Open in IMG/M
3300017708	Marine viral communities from the Subarctic Pacific Ocean - Lowphox_04 viral metaG	Environmental	Open in IMG/M
3300019765	Freshwater microbial communities from the Broadkill River, Lewes, Delaware, United States ? IW13Sep16_MG	Environmental	Open in IMG/M
3300020185	Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160517_1	Environmental	Open in IMG/M
3300020385	Marine microbial communities from Tara Oceans - TARA_B100001059 (ERX556045-ERR598965)	Environmental	Open in IMG/M
3300021364	Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO304	Environmental	Open in IMG/M
3300022067	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_30 (v3)	Environmental	Open in IMG/M
3300022069	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_30 (v2)	Environmental	Open in IMG/M
3300022071	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Sep_01 (v2)	Environmental	Open in IMG/M
3300022168	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_31 (v2)	Environmental	Open in IMG/M
3300022187	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Sep_01 (v3)	Environmental	Open in IMG/M
3300024236	Seawater microbial communities from Monterey Bay, California, United States - 67D	Environmental	Open in IMG/M
3300024320	Seawater microbial communities from Monterey Bay, California, United States - 38D	Environmental	Open in IMG/M
3300025610	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_D_<0.8_DNA (SPAdes)	Environmental	Open in IMG/M
3300025630	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_15_>0.8_DNA (SPAdes)	Environmental	Open in IMG/M
3300025671	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_4 (SPAdes)	Environmental	Open in IMG/M
3300025759	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_24 (SPAdes)	Environmental	Open in IMG/M
3300025769	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_21 (SPAdes)	Environmental	Open in IMG/M
3300025771	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_N_>0.8_DNA (SPAdes)	Environmental	Open in IMG/M
3300025815	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_D_<0.8_DNA (SPAdes)	Environmental	Open in IMG/M
3300025828	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_N_<0.8_DNA (SPAdes)	Environmental	Open in IMG/M
3300025840	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_D_>0.8_DNA (SPAdes)	Environmental	Open in IMG/M
3300025853	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Sep_01 (SPAdes)	Environmental	Open in IMG/M
3300025889	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18 (SPAdes)	Environmental	Open in IMG/M
3300026479	Seawater microbial communities from Monterey Bay, California, United States - 26D	Environmental	Open in IMG/M
3300027833	Marine eukaryotic phytoplankton communities from Arctic Ocean - Fram Strait ARC3M Metagenome (SPAdes)	Environmental	Open in IMG/M
3300028127	Seawater microbial communities from Monterey Bay, California, United States - 49D	Environmental	Open in IMG/M
3300028524	Metatranscriptome of estuarine water microbial communities from the Columbia River estuary, Oregon, United States ? R1184 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300032277	Microbial mat bacterial communities from mineral coupon in-situ incubated in ocean water Damariscotta River, Maine, United States - 3-month pyrrhotite	Environmental	Open in IMG/M
3300034375	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_30 (v4)	Environmental	Open in IMG/M
3300034418	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_28 (v4)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
DelMOSpr2010_101627723	3300000116	Marine	MKTPMQELLEWVRATLPMDLDTPRLIEEKIESMLEKEKEVMQDFATDYERECRINLERSIEKCWDKTFNTKDR*
DelMOSpr2010_101895562	3300000116	Marine	MKTPMQELLEWVRATLPMDLKTPQMIERKIESMLEKEKEVMQDFATEYERECRVNLERSIEKCWDETFNTKDDTSKGIN*
DelMOSpr2010_102445741	3300000116	Marine	LHSSPQINLLMKTPMQELLEWVRATLPMDLETPQMIERKIESMLEKEKEVMQDFATEY
DelMOWin2010_100117775	3300000117	Marine	MKTPMQELLEWVRATLPMDLDTPRMIEQKIESMLEKEKEVMQDFATEYERECRVNLERSIEKCWDETFNTKDDTSKGIN*
Ga0075474_100151451	3300006025	Aqueous	MKTPMQELLEWVRATLPMDLETPQMIEEKIESMLEREKEVMQDFATDYERECRINLERSIEKCWDETFNTKDDTSKGIN*
Ga0075474_100253657	3300006025	Aqueous	MKTPMQELLEWVRATLPMDLDTPRLIEDKIEAMLEEEREVMMEFATDYERECRVNLERSIRKCWDETFNTKDDTSKGIN*
Ga0075474_100368922	3300006025	Aqueous	MKTPMQELLEWVQATLPMDLETPQMIERKIESMLEEEREVMMEFATDYERECRVNLERSIRKCWDETFNTKER*
Ga0075474_102484822	3300006025	Aqueous	MKTPIQEMLEWVRATLPMDLDTPRLIEEKIESMLEEEKEVMQDFATDYERECRINLERSIEKCWDETFNTKDDTSKGIN*
Ga0075478_100191443	3300006026	Aqueous	MKTPMQELLEWVRATLPMDLDTPRLIEEKIEAMLEKEKEVMMEFATDYERECRVNLERSIRKCWDKIFKTKEK*
Ga0075478_100384381	3300006026	Aqueous	MKTPMQEMLEWVRATLPMDLDTPRLIEEKIESLLEKEKEVMQDFATDYERECRINLERSIEKCWDETFNTKER*
Ga0075478_100866222	3300006026	Aqueous	MKTPMQELLEWVRATLPMDLETPQMIERKIESMLEREKEVMQDFATDYERECRINLERSIEKCWDETFNTKDDTSKGIN*
Ga0075478_100944652	3300006026	Aqueous	MKTPMQELLEWVRATLPMDLDTPRLIEEKIEAMLEEEREVMMEFATDYERECRVNLERSIRKCWDETFNTKDDTSKGIN*
Ga0075478_100985101	3300006026	Aqueous	MKTTMQELLEWVRATLPMDLDTPQMIERKIESMLEKEKELMQDFATDYERECRINLERSIEKCWDETFNTKDDTSKGIN*
Ga0075478_101785223	3300006026	Aqueous	MKTAMQELLEWVRATLPMDLETPQMIERKIESMLEKEKEVMQDFATDYERECRINLERSIEKCWDETFKTK
Ga0075515_109176153	3300006404	Aqueous	ATLPMDLDTPRLIEEKIEAMLEKEKEVMMEFATDYERECRVNLERSIRKCWDKIFKTKEK
Ga0075461_101361621	3300006637	Aqueous	MKTPMQELLEWVQATLPMDLETPQMIERKIESMLEEEREVMMEFATDYERECRVNLERSIRKCWDETFNTKDDTSKGIN*
Ga0075461_102227963	3300006637	Aqueous	QEKMKTPMQEMLEWVRATLPMDLDTPRLIEEKIESLLEKEKEVMQDFATEYERECRINLERSIEKCWHETFNTKER*
Ga0098037_10493211	3300006737	Marine	MKTAMQELLEWVRATLPMDLETPRLIERKIESMLEEEKEVMQDFATDYERECRINLERSIEKCWDETFNTKER*
Ga0070749_101610983	3300006802	Aqueous	MKTPMQELLEWVRATLPMDLETPQMIERKIESMLEREKEVMQDFATDYERECRINLERSIEKCWDE
Ga0070749_104004972	3300006802	Aqueous	MKTPMQEMLEWVRATLPMDLDTPRLIEEKIESLLEKEKEVMQDFATEYERECRINLERSIEKCWHETFNTKER*
Ga0070749_104327752	3300006802	Aqueous	MQELLEWVRATLPMDLDTPRLIEEKIEAMLEEEREVMMEFATDYERECRVNLERSIRKCWDETFNTKDDTSKGIN*
Ga0070754_100846451	3300006810	Aqueous	MQELLEWVRATLPMDLDTPRLIEEKIEAMLEKEKEVMMEFATDYERECRVNLERSIRKCWDKIFKTKEK*
Ga0070754_102886941	3300006810	Aqueous	MKTPMQEMLEWVRATLPMDLDTARLIEEKVISMLEKEEEAMCQFASNFVEYECFASCYGNVECGSSTEEYFDKTFKTKER*
Ga0070754_104193493	3300006810	Aqueous	DSSPQINLLMKTPMQELLEWVRATLPMDLETPQMIEEKIESMLEREKEVMQDFATDYERECRINLERSIEKCWDETFNTKER*
Ga0070754_104795272	3300006810	Aqueous	MKTPMQELLEWVRATLPMDLKTPQMIEEKIESLLEKEKEVMQDFATDYERECRINLERNIEKCWDETFNTKER*
Ga0075476_101385591	3300006867	Aqueous	MQELLEWVRATLPMDLETPQMIEEKIESMLEREKEVMQDFATDYERECRINLERSIEKCWDET
Ga0075476_101816452	3300006867	Aqueous	MKTPMQEMLEWVRATLPMDLDTPRLIEEKIESLLEKEKEVMQDFATEYERECRINLERNIEKCWDETFNTKER*
Ga0075481_100825761	3300006868	Aqueous	QREMKTPMQELLEWVRATLPMDLKTPQMIEEKIESLLEKEKEVMQDFATDYERECRINLERNIEKCWDETFNTKER*
Ga0075481_101497225	3300006868	Aqueous	TPMQELLEWVRATLPMDLDTPRLIEEKIEAMLEEEREVMMEFATDYERECRVNLERSIRKCWDETFNTKDDTSKGIN*
Ga0075477_100918883	3300006869	Aqueous	MKTPLQELLEWVRATLPMDLETPQMIERKIESMLEKEKEVMQDFATDYERECRINLERSIEKCWDETFNTKER*
Ga0075477_103009101	3300006869	Aqueous	MKTPIQEMLEWVRATLPMDLDTPRLIEEKIESMLEKEKEVMQDFATEYERECRINLERSIEKCWHETFNNKKR*
Ga0075477_104134402	3300006869	Aqueous	TLPMDLDTPRLIEEKIEAMLEEEREVMMEFATDYERECRVNLERSIRKCWDETFNTKDDTSKGIN*
Ga0075479_102873961	3300006870	Aqueous	MKTPMQELLEWVRATLPMDLKTPQMIEEKIESLLEKEKEVMQDFATDYERECRINLER
Ga0075475_104514501	3300006874	Aqueous	MKTPMQELLEWVRATLPMDLDTPRLIEEKIEAMLEEEREVMMEFATDYERECRINLERSIEKCWDETFNTKDDTSKGIN*
Ga0070750_101741471	3300006916	Aqueous	MMKPLKPKRDESLHSSPQINLLMKTPMQELLEWVRATLPMDLETPQMIERKIESMLEKEKEVMQDFATEYERECRVNLERSIEKCWDETFNTKER*
Ga0070746_1000180837	3300006919	Aqueous	MKTPMQELLEWVRATLPMDLETPQMIERKIESMLEKEKEVMQDFATEYERECRVNLERSIEKCWDETFNTKDDTSKGIN*
Ga0070746_102463913	3300006919	Aqueous	MRTPMEEMLEWVRATLPMDLDTPRLIEEKIESMLEKEKEVMQEFATEYERECRINLERSIQKCWDK
Ga0098045_11290161	3300006922	Marine	MKTAMQELLEWVRATLPMDLETPRLIERKIESMLEEEKEVMQDFATDYERECRINLERSIDKCWD*
Ga0075460_100988273	3300007234	Aqueous	MKTPMQEMLEWVRATLPMDLDTPRLIEEKIESMLEKEKEVMQDFATDYERECRINLERSIEKCWDKTFNTKEK*
Ga0075460_101264341	3300007234	Aqueous	MKTPMQELLEWVRATLPMDLDTPRLIEEKIEAMLEEEREVMMEFATDYERECRVNLERSIRKCWDETFNTKER*
Ga0070745_13435082	3300007344	Aqueous	MKTAMQELLEWVRATLPMDLETPQMIERKIESMLEKEKEVMQDFATDYERECRINLERSIEKCWDETFKTKER*
Ga0070752_13226963	3300007345	Aqueous	LTPKRDESPDSSPQINLLMKTPMQELLEWVRATLPMDLETPQMIEEKIESMLEREKEVMQDFATDYERECRINLERSIEKCWDETFNTKER*
Ga0070752_13868842	3300007345	Aqueous	MKTAMQELLEWVRATLPMDLETPQMIERKIESMLEKEKEVMQDFATDYERECRINLERSIEKCWDE
Ga0070753_11042821	3300007346	Aqueous	MKTPMQELLEWVRATLPMDLETPQMIEEKIESMLEREKEVMQDFATDYERECRINLERSIEKCWDETFNTKER*
Ga0070753_12744183	3300007346	Aqueous	MKTAMQELLEWVRATLPMDLETPQMIERKIESMLEKEKEVMQDFATDYERECRIN
Ga0099849_11740854	3300007539	Aqueous	MKTPMQELLEWVRATLPMDLETPQMIERKIQSMLEKEKEVMQDFATDYERECRINLERSIEKCWDE
Ga0099846_11557391	3300007542	Aqueous	MKTPMQELLEWVRATLPMDLETPQMIERKIESMLEKEKEVMQDFATDYERECRVNLERSIRKCWDKTFNTKDDTSKGIN*
Ga0070751_10624331	3300007640	Aqueous	MKTTMQELLEWVRATLPMDLDTPRLIEEKIEAMLEKEKEVMMEFATDYERECRVNLERSIRKCWDKIFKTKEK*
Ga0070751_13803501	3300007640	Aqueous	MKTPMQELLEWVRATLPMDLDTPRIIEQKIESMLEKEKEVMQDFATDYEREC
Ga0075480_102429642	3300008012	Aqueous	MKTPMQELLEWVRATLPMDLETPQMIEEKIESMLEREKEVMQDFATDYERECRINLERSIEKCWDETFNT
Ga0075480_106174452	3300008012	Aqueous	MKTAMQELLEWVRATLPMDLETPQMIERKIESMLEEEREVMMEFATDYERECRVNLERSIRKCWD
Ga0129345_11961912	3300010297	Freshwater To Marine Saline Gradient	MKTPMQELLEWVRATLPMDLETPQMIERKIESMLEKEKEVMQDFATDYERECRINLERSIEKCWDETFNTKDDTSKGIN*
Ga0129342_10440962	3300010299	Freshwater To Marine Saline Gradient	MKTPMQELLEWVRATLPMDLDTPRLIEEKIESMLEKEKEVMQDFATEYERECRINLERSIEKCWDETFNTKDDTSKGIN*
Ga0129351_11759551	3300010300	Freshwater To Marine Saline Gradient	MKTPMQEMLEWVRATLPMDLETPQMIERKIQSMLEKEKEVMQDFATDYERECRINLERSIEKCWDETFNT
Ga0129351_13107973	3300010300	Freshwater To Marine Saline Gradient	MKTPMQELLEWVRATLPMDLETPQMIERKIESMLEKEKEVMQDFATDYERECRINLERSIEKCW
Ga0129351_13312992	3300010300	Freshwater To Marine Saline Gradient	MKTPMQELLEWVRATLPMDLETPQMIEQKIESMLEEEKEVMMEFATDYERECRVNLERSIRKCWDETFNTKDDTSKGIN*
Ga0136549_100058285	3300010389	Marine Methane Seep Sediment	MKTPIQEMLQWVRATLPMDLDTPRLIEEKIESMLEKEKEVMQDFATDYERECRINLERSIEKCWDETFKTKER*
Ga0181369_10617344	3300017708	Marine	MKTAMQELLEWVRATLPMDLETPRLIERKIESMLEEEKEVMQDFATDYERECRINLERSMEKCWDETFNTKER
Ga0194024_10145093	3300019765	Freshwater	MKTPMQELLEWVRATLPMDLDTPRLIEDKIEAMLEEEREVMMEFATDYERECRINLERSIEKCWDRTFKTKER
Ga0206131_103344592	3300020185	Seawater	MKTPMQEMLEWVRVTLPMDLDTARLIEEKVISMLEKEKEAMCEFAWEYERDCRINLERSIEKCWDKIFKTKEQ
Ga0211677_100560385	3300020385	Marine	MKTAMQELLEWVRATLPMDLETPRLIERKIESMLEEEKEVMQDFATDYERECRINLERSIEKCWDETFNTKER
Ga0213859_100365284	3300021364	Seawater	MKTPMQEMLEWVRATLPMDLDTPRLIEEKIESLLEKEKEVMQDFATDYERECRINLERSIEKCWHETFNTKER
Ga0213859_104129391	3300021364	Seawater	MKTPMQELLEWVRATLPMDLKTPQMIEEKIESLLEKEKEVMQDFATDYERECRINLERNIEKCWDETFNTKER
Ga0196895_10414302	3300022067	Aqueous	MKTTMQELLEWVRATLPMDLDTPQMIERKIESMLEKEKELMQDFATDYERECRINLERSIEKCWDETFNTKD
Ga0212026_10317994	3300022069	Aqueous	MKTPMQELLEWVRATLPMDLDTPRLIEEKIEAMLEEEREVMMEFATDYERECRVNLERSIRKCWDKIFKTKEK
Ga0212028_10568732	3300022071	Aqueous	MKTPMQELLEWVRATLPMDLDTPRLIEEKIEAMLEEEREVMMEFATDYERECRVNLERSIRKCWDETFNTKDDTSKGIN
Ga0212028_10595431	3300022071	Aqueous	MKTTMQELLEWVRATLPMDLDTPQMIERKIESMLEKEKELMQDFATDYERECRINLERSIEKCWDETFNTKDDTSKGIN
Ga0212028_11053251	3300022071	Aqueous	EMKTPMQELLEWVRATLPMDLDTPRLIEEKIEAMLEKEKEVMMEFATDYERECRVNLERSIRKCWDKIFKTKEK
Ga0212027_10422882	3300022168	Aqueous	MKTPMQELLEWVRATLPMDLETPQMIERKIESMLEREKEVMQDFATDYERECRINLERS
Ga0196899_10072168	3300022187	Aqueous	MKTAMQELLEWVRATLPMDLETPQMIERKIESMLEKEKEVMQDFATDYERECRINLERSIEKCWDETFNTKER
Ga0196899_11241844	3300022187	Aqueous	QRGMKTPMQELLEWVRATLPMDLDTPRLIEEKIEAMLEEEREVMMEFATDYERECRVNLERSIRKCWDETFNTKDDTSKGIN
Ga0228655_10309955	3300024236	Seawater	MKTPMQELLEWVRATLPMDLDTPRMIEEKIESLLEKEKEVMQDFATEYERECRINLERNIEKCWEETFNTKER
Ga0233398_10881541	3300024320	Seawater	EMKTPMQELLEWVRATLPMDLDTPRMIEEKIESLLEKEKEVMQDFATEYERECRINLERNIEKCWEETFNTKER
Ga0208149_10037035	3300025610	Aqueous	MKTPMQELLEWVRATLPMDLDTPRLIEEKIEAMLEKEKEVMMEFATDYERECRVNLERSIRKCWDKIFKTKEK
Ga0208149_10140647	3300025610	Aqueous	MQELLEWVRATLPMDLDTPRLIEEKIEAMLEEEREVMMEFATDYERECRVNLERSIRKCWDETFNTKDDTSKGIN
Ga0208149_10655882	3300025610	Aqueous	MQELLEWVRATLPMDLETPQMIEEKIESMLEREKEVMQDFATDYERECRINLERSIEKCWDETFN
Ga0208149_11205312	3300025610	Aqueous	MKTPMQEMLEWVRATLPMDLDTPRLIEEKIESLLEKEKEVMQDFATEYERECRINLERSIEKCWHETFNTKER
Ga0208004_11097621	3300025630	Aqueous	MKTPMQELLEWVQATLPMDLETPQMIERKIESMLEEEREVMMEFATDYERECRVNLERSIRKCWDETFNTKDDTSKGIN
Ga0208898_10299283	3300025671	Aqueous	MKTPIQEMLEWVRATLPMDLDTPRLIEEKIESMLEEEKEVMQDFATDYERECRINLERSIEKCWDETFNTKDDTSKGIN
Ga0208898_10431855	3300025671	Aqueous	MKTPMQEMLEWVRATLPMDLDTARLIEEKVISMLEKEEEAMCQFASNFVEYECFASCYGNVECGSSTEEYFDKTFKTKER
Ga0208899_10757033	3300025759	Aqueous	MKTPMQELLEWVRATLPMDLETPQMIERKIESMLEREKEVMQDFATDYERECRINLE
Ga0208899_11257462	3300025759	Aqueous	MKTPMQELLEWVQATLPMDLETPQMIERKIESMLEEEREVMMEFATDYERECRVNLERSIRKCWDETFNTKER
Ga0208899_11553591	3300025759	Aqueous	MMKPLKPKRDESLHSSPQINLLMKTPMQELLEWVRATLPMDLETPQMIERKIESMLEKEKEVMQDFATEYERECRVNLERSIEKCWDETFNTKER
Ga0208767_10754624	3300025769	Aqueous	MKTPMQELLEWVRATLPMDLETPQMIERKIESMLEREKEVMQDFATDYERECRINLERSIEKCWDETFNTKER
Ga0208767_12366741	3300025769	Aqueous	MKTPMQELLEWVRATLPMDLETPQMIERKIESMLEKEKEVMQDFATEYERECRVNLERSIEKCWDETFNTKER
Ga0208427_11288352	3300025771	Aqueous	MKTPLQELLEWVRATLPMDLETPQMIERKIESMLEKEKEVMQDFATDYERECRINLERSIEKCWDETFNTKER
Ga0208785_10832011	3300025815	Aqueous	MKTPMQELLEWVRATLPMDLDTPRLIEEKIEAMLEEEREVMMEFATDYERECRVNLERSIRKCWDETFNTKER
Ga0208547_10148897	3300025828	Aqueous	MKTTMQELLEWVRATLPMDLDTPRLIEEKIEAMLEKEKEVMMEFATDYERECRVNLERSIRKCWDKIFKTKEK
Ga0208547_11126992	3300025828	Aqueous	MKTPMQELLEWVRATLPMDLETPQMIEEKIESMLEREKEVMQDFATDYERECRINLERSIEKCWDETFNTKER
Ga0208917_11238474	3300025840	Aqueous	MKTPMQELLEWVRATLPMDLDTPRLIEEKIEAMLEKEKEVMMEFATDYERECRVNLERSIRKCWDETFNTKDDTSKGIN
Ga0208645_12750351	3300025853	Aqueous	MKTAMQELLEWVRATLPMDLETPQMIERKIESMLEKEKEVMQDFATDYERECRINLE
Ga0208644_11935033	3300025889	Aqueous	MKTPMQEMLEWVRATLPMDLDTPRLIEEKIESLLEKEKEVMQDFATEYEQECRINLERSIEKCWHETFNTKER
Ga0228622_10080661	3300026479	Seawater	MQELLEWVRATLPMDLDTPRMIEEKIESLLEKEKEVMQDFATEYERECRINLERNIEKCWEETFNTKER
Ga0209092_100000023	3300027833	Marine	MKTPMQEMLEWVRVTLPMDLDTARLIEEKVISMLEKEKEAMCEFAWEYERDCRINLERSIEKCWDKIFKTKEK
Ga0233401_10387061	3300028127	Seawater	MKTPMQELLEWVRATLPMDLDTPRMIEEKIESLLEKEKEVMQDFATEYERECR
Ga0210314_1060111	3300028524	Estuarine	MKTPMQELLEWIRTTLPMDLETPRMIEQKIESMLEKEKERMCGFAEYTRKCGFLSDQR
Ga0316202_101802764	3300032277	Microbial Mat	MKTPIQEMLEWVRATLPMDLDTPRLIEEKIESMLEEEKEVMQDFATDYERECRINLERSIEKCWDETFNTKENE
Ga0316202_102063531	3300032277	Microbial Mat	MQELLEWVRATLPMDLDTPRLIEEKIESMLEKEKEVMQDFATEYERECRINLERSIEKCWDETFNTKER
Ga0316202_102874242	3300032277	Microbial Mat	MKTPMQELLEWVRATLPMDLETPQMIERKIESLLEKEKEVMQDFATDYERECRINLERSIEKRWDKTFKTNDVK
Ga0348336_116580_685_864	3300034375	Aqueous	MKTPMQELLEWVRATLPMDLETPQMIEEKIESMLEREKEVMQDFATDYERECRINLERSI
Ga0348336_202308_103_324	3300034375	Aqueous	MKTPLQELLEWVRATLPMDLETPQMIERKIESMLEKEKEVMQDFATDYERECRINLERSIEKCWDETFKTKER
Ga0348337_104966_701_907	3300034418	Aqueous	MKTPMQELLEWVRATLPMDLETPQMIEEKIESMLEREKEVMQDFATDYERECRINLERSIEKCWDETFN

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F101203

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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