NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F101142

Metagenome / Metatranscriptome Family F101142

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F101142
Family Type Metagenome / Metatranscriptome
Number of Sequences 102
Average Sequence Length 40 residues
Representative Sequence MATTTYEAQELTLIDGTKITVRPLKISLLRPFMKKFEGV
Number of Associated Samples 86
Number of Associated Scaffolds 102

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 98.04 %
% of genes near scaffold ends (potentially truncated) 100.00 %
% of genes from short scaffolds (< 2000 bps) 92.16 %
Associated GOLD sequencing projects 84
AlphaFold2 3D model prediction Yes
3D model pTM-score0.33

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (92.157 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater
(26.471 % of family members)
Environment Ontology (ENVO) Unclassified
(66.667 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Water (non-saline)
(55.882 % of family members)



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Multiple Sequence Alignments

Select alignment to view:      


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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 16.42%    β-sheet: 11.94%    Coil/Unstructured: 71.64%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.33
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 102 Family Scaffolds
PF13649Methyltransf_25 1.96
PF05065Phage_capsid 1.96
PF13847Methyltransf_31 0.98
PF04860Phage_portal 0.98

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 102 Family Scaffolds
COG4653Predicted phage phi-C31 gp36 major capsid-like proteinMobilome: prophages, transposons [X] 1.96


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A92.16 %
All OrganismsrootAll Organisms7.84 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300000756|JGI12421J11937_10061735Not Available1161Open in IMG/M
3300001282|B570J14230_10207470Not Available538Open in IMG/M
3300001968|GOS2236_1044592Not Available1593Open in IMG/M
3300002408|B570J29032_109118859Not Available601Open in IMG/M
3300002408|B570J29032_109125340Not Available603Open in IMG/M
3300004112|Ga0065166_10469972Not Available531Open in IMG/M
3300004126|Ga0066179_10124251Not Available681Open in IMG/M
3300005527|Ga0068876_10720809Not Available532Open in IMG/M
3300005584|Ga0049082_10111505Not Available957Open in IMG/M
3300005662|Ga0078894_10245514All Organisms → Viruses → Predicted Viral1623Open in IMG/M
3300005805|Ga0079957_1162774Not Available1119Open in IMG/M
3300006484|Ga0070744_10117297Not Available768Open in IMG/M
3300007214|Ga0103959_1175925Not Available1411Open in IMG/M
3300007622|Ga0102863_1011005Not Available2482Open in IMG/M
3300007670|Ga0102862_1155596Not Available586Open in IMG/M
3300007973|Ga0105746_1092024Not Available989Open in IMG/M
3300008110|Ga0114343_1003408Not Available12456Open in IMG/M
3300008266|Ga0114363_1076798Not Available1255Open in IMG/M
3300008962|Ga0104242_1072183Not Available575Open in IMG/M
3300008962|Ga0104242_1086040Not Available521Open in IMG/M
3300009068|Ga0114973_10737992Not Available500Open in IMG/M
3300009165|Ga0105102_10621954Not Available599Open in IMG/M
3300009183|Ga0114974_10789238Not Available510Open in IMG/M
3300010354|Ga0129333_10238598Not Available1643Open in IMG/M
3300010354|Ga0129333_11723774Not Available509Open in IMG/M
3300012000|Ga0119951_1144840Not Available517Open in IMG/M
3300013005|Ga0164292_10218607Not Available1345Open in IMG/M
3300013005|Ga0164292_10353398Not Available992Open in IMG/M
(restricted) 3300013132|Ga0172372_10069243All Organisms → Viruses → Predicted Viral3202Open in IMG/M
(restricted) 3300013132|Ga0172372_10327353Not Available1078Open in IMG/M
3300013372|Ga0177922_10118955Not Available1700Open in IMG/M
(restricted) 3300014720|Ga0172376_10269781Not Available1033Open in IMG/M
3300020109|Ga0194112_10927118Not Available557Open in IMG/M
3300020141|Ga0211732_1001468Not Available544Open in IMG/M
3300020151|Ga0211736_11024430Not Available944Open in IMG/M
3300020159|Ga0211734_10358119Not Available769Open in IMG/M
3300020159|Ga0211734_11322943Not Available513Open in IMG/M
3300020161|Ga0211726_10012033All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage4657Open in IMG/M
3300020161|Ga0211726_10936013Not Available918Open in IMG/M
3300020172|Ga0211729_11147138Not Available757Open in IMG/M
3300020179|Ga0194134_10354995Not Available557Open in IMG/M
3300020198|Ga0194120_10359567Not Available703Open in IMG/M
3300020490|Ga0208052_122139Not Available527Open in IMG/M
3300020536|Ga0207939_1017993Not Available1014Open in IMG/M
3300020540|Ga0208227_1021223All Organisms → Viruses → Predicted Viral1036Open in IMG/M
3300020543|Ga0208089_1005431Not Available2333Open in IMG/M
3300020543|Ga0208089_1040237Not Available632Open in IMG/M
3300020572|Ga0207909_1059589Not Available578Open in IMG/M
3300020573|Ga0208485_1049860Not Available749Open in IMG/M
3300020573|Ga0208485_1071483Not Available580Open in IMG/M
3300021092|Ga0194122_10212371All Organisms → Viruses1015Open in IMG/M
3300021092|Ga0194122_10295150Not Available834Open in IMG/M
3300021424|Ga0194117_10189365Not Available1023Open in IMG/M
3300022859|Ga0222672_1008340Not Available1859Open in IMG/M
3300022865|Ga0222668_1053025Not Available577Open in IMG/M
3300022866|Ga0222651_1001067Not Available14463Open in IMG/M
3300024306|Ga0255148_1080047Not Available560Open in IMG/M
3300024346|Ga0244775_10407137Not Available1118Open in IMG/M
3300024346|Ga0244775_10745974Not Available786Open in IMG/M
3300024356|Ga0255169_1042412Not Available797Open in IMG/M
3300025608|Ga0209654_1048336Not Available1331Open in IMG/M
3300026097|Ga0209953_1001813Not Available6205Open in IMG/M
3300027191|Ga0208021_1011874Not Available1328Open in IMG/M
3300027299|Ga0255124_1063556Not Available637Open in IMG/M
3300027563|Ga0209552_1083333Not Available872Open in IMG/M
3300027586|Ga0208966_1073698Not Available954Open in IMG/M
3300027608|Ga0208974_1079873Not Available896Open in IMG/M
3300027649|Ga0208960_1173351Not Available518Open in IMG/M
(restricted) 3300027730|Ga0247833_1194031Not Available766Open in IMG/M
3300027741|Ga0209085_1037804All Organisms → Viruses → Predicted Viral2266Open in IMG/M
3300027754|Ga0209596_1201362Not Available848Open in IMG/M
3300027782|Ga0209500_10116248Not Available1302Open in IMG/M
(restricted) 3300027970|Ga0247837_1355669Not Available530Open in IMG/M
3300028025|Ga0247723_1032014Not Available1645Open in IMG/M
3300031758|Ga0315907_10281599Not Available1370Open in IMG/M
3300031857|Ga0315909_10664255Not Available683Open in IMG/M
3300031857|Ga0315909_10735498Not Available634Open in IMG/M
3300031951|Ga0315904_10567369Not Available985Open in IMG/M
3300031951|Ga0315904_10627973Not Available918Open in IMG/M
3300031951|Ga0315904_10849962Not Available744Open in IMG/M
3300032050|Ga0315906_11028556Not Available616Open in IMG/M
3300032093|Ga0315902_10852176Not Available710Open in IMG/M
3300033992|Ga0334992_0535767Not Available502Open in IMG/M
3300034013|Ga0334991_0179930Not Available936Open in IMG/M
3300034022|Ga0335005_0407450Not Available778Open in IMG/M
3300034060|Ga0334983_0699076Not Available540Open in IMG/M
3300034068|Ga0334990_0607865Not Available574Open in IMG/M
3300034071|Ga0335028_0231799Not Available1127Open in IMG/M
3300034082|Ga0335020_0203737Not Available988Open in IMG/M
3300034082|Ga0335020_0321193Not Available755Open in IMG/M
3300034103|Ga0335030_0148438Not Available1671Open in IMG/M
3300034104|Ga0335031_0223154Not Available1264Open in IMG/M
3300034106|Ga0335036_0237121Not Available1243Open in IMG/M
3300034111|Ga0335063_0130517Not Available1485Open in IMG/M
3300034116|Ga0335068_0216935Not Available995Open in IMG/M
3300034117|Ga0335033_0096543All Organisms → Viruses → Predicted Viral1713Open in IMG/M
3300034122|Ga0335060_0631817Not Available535Open in IMG/M
3300034168|Ga0335061_0263610Not Available905Open in IMG/M
3300034283|Ga0335007_0293161Not Available1070Open in IMG/M
3300034355|Ga0335039_0256518Not Available942Open in IMG/M
3300034356|Ga0335048_0134825All Organisms → Viruses → Predicted Viral1435Open in IMG/M
3300034356|Ga0335048_0562425Not Available535Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
FreshwaterEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater26.47%
FreshwaterEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater10.78%
FreshwaterEnvironmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater7.84%
Freshwater LakeEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake6.86%
FreshwaterEnvironmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater5.88%
FreshwaterEnvironmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater4.90%
Freshwater LakeEnvironmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake4.90%
Freshwater LakeEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake4.90%
Freshwater LenticEnvironmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic3.92%
FreshwaterEnvironmental → Aquatic → Freshwater → River → Unclassified → Freshwater2.94%
EstuarineEnvironmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine2.94%
EstuarineEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine2.94%
Saline WaterEnvironmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water2.94%
Freshwater, PlanktonEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton1.96%
Freshwater To Marine Saline GradientEnvironmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient1.96%
MarineEnvironmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine1.96%
Freshwater SedimentEnvironmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment0.98%
Freshwater And SedimentEnvironmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater And Sediment0.98%
LakeEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Lake0.98%
Estuary WaterEnvironmental → Aquatic → Marine → Coastal → Unclassified → Estuary Water0.98%
Pond WaterEnvironmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Pond Water0.98%
Deep Subsurface SedimentEnvironmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment0.98%

Visualization
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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OIDSample NameHabitat TypeIMG/M Link
3300000756Freshwater microbial communities from dead zone in Lake Erie, Canada - CCB hypolimnion July 2011EnvironmentalOpen in IMG/M
3300001282Freshwater microbial communities from Lake Mendota, WI - Practice 20APR2010 epilimnionEnvironmentalOpen in IMG/M
3300001968Marine microbial communities from Lake Gatun, Panama - GS020EnvironmentalOpen in IMG/M
3300002408Freshwater microbial communities from Lake Mendota, WI, sample - 15JUL2010 deep hole epilimnion (Lake Mendota Combined assembly, ASSEMBLY_DATE=20140123)EnvironmentalOpen in IMG/M
3300004112Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.SD (version 2)EnvironmentalOpen in IMG/M
3300004126Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM15.DN (version 2)EnvironmentalOpen in IMG/M
3300005527Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel5S_2200h metaGEnvironmentalOpen in IMG/M
3300005584Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG HU45MSRFEnvironmentalOpen in IMG/M
3300005662Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MLB.SD (version 4)EnvironmentalOpen in IMG/M
3300005805Microbial and algae communities from Cheney Reservoir in Wichita, Kansas, USAEnvironmentalOpen in IMG/M
3300006484Estuarine microbial communities from the Columbia River estuary, USA - metaG S.535EnvironmentalOpen in IMG/M
3300007214Combined Assembly of cyanobacterial bloom in Punggol water reservoir, Singapore (Diel cycle-Surface layer) 9 sequencing projectsEnvironmentalOpen in IMG/M
3300007622Estuarine microbial communities from the Columbia River estuary - metaG 1449A-02EnvironmentalOpen in IMG/M
3300007670Estuarine microbial communities from the Columbia River estuary - metaG 1449C-3EnvironmentalOpen in IMG/M
3300007973Coastal water column microbial communities from Columbia River Estuary, Oregon, USA - CMOP_DNA_1460A_0.2umEnvironmentalOpen in IMG/M
3300008110Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample E2014-0048-3-NAEnvironmentalOpen in IMG/M
3300008266Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample HABS-E2014-0108-C-NAEnvironmentalOpen in IMG/M
3300008962Freshwater microbial communities from Lake Lanier in Georgia, USA - LL_1007_MT5EnvironmentalOpen in IMG/M
3300009068Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaGEnvironmentalOpen in IMG/M
3300009165Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (6) Depth 1-3cm September2015EnvironmentalOpen in IMG/M
3300009183Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaGEnvironmentalOpen in IMG/M
3300010354Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_0.6_0.8_DNAEnvironmentalOpen in IMG/M
3300012000Freshwater microbial communities from Lake Lanier in Georgia, USA - LL_1007AEnvironmentalOpen in IMG/M
3300013005Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES117 metaGEnvironmentalOpen in IMG/M
3300013132 (restricted)Freshwater microbial communities from Kabuno Bay, South-Kivu, Congo ? kab_092012_9.5mEnvironmentalOpen in IMG/M
3300013372Freshwater microbial communities from Lake Erie, Ontario, Canada. Combined Assembly of 10 SPsEnvironmentalOpen in IMG/M
3300014720 (restricted)Freshwater microbial communities from Kabuno Bay, South-Kivu, Congo ? kab_092012_35mEnvironmentalOpen in IMG/M
3300020109Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015016 Mahale Deep Cast 400mEnvironmentalOpen in IMG/M
3300020141Freshwater lake microbial communities from Lake Erken, Sweden - P4710_104 megahit1EnvironmentalOpen in IMG/M
3300020151Freshwater lake microbial communities from Lake Erken, Sweden - P4710_202 megahit1EnvironmentalOpen in IMG/M
3300020159Freshwater lake microbial communities from Lake Erken, Sweden - P4710_108 megahit1EnvironmentalOpen in IMG/M
3300020161Freshwater lake microbial communities from Lake Erken, Sweden - P4710_101 megahit1EnvironmentalOpen in IMG/M
3300020172Freshwater lake microbial communities from Lake Erken, Sweden - P4710_102 megahit1EnvironmentalOpen in IMG/M
3300020179Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015056 Kigoma Offshore 0mEnvironmentalOpen in IMG/M
3300020198Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015019 Mahale Deep Cast 65mEnvironmentalOpen in IMG/M
3300020490Freshwater microbial communities from Lake Mendota, WI - 18JUL2008 deep hole epilimnion (SPAdes)EnvironmentalOpen in IMG/M
3300020536Freshwater microbial communities from Lake Mendota, WI - 02JUN2012 deep hole epilimnion (SPAdes)EnvironmentalOpen in IMG/M
3300020540Freshwater microbial communities from Lake Mendota, WI - 13JUN2011 deep hole epilimnion (SPAdes)EnvironmentalOpen in IMG/M
3300020543Freshwater microbial communities from Lake Mendota, WI - 29JUN2012 deep hole epilimnion (SPAdes)EnvironmentalOpen in IMG/M
3300020572Freshwater microbial communities from Lake Mendota, WI - 05MAY2010 deep hole epilimnion (SPAdes)EnvironmentalOpen in IMG/M
3300020573Freshwater microbial communities from Lake Mendota, WI - 17JUL2012 deep hole epilimnion (SPAdes)EnvironmentalOpen in IMG/M
3300021092Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015021 Mahale Deep Cast 10mEnvironmentalOpen in IMG/M
3300021424Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015009 Mahale N1 surfaceEnvironmentalOpen in IMG/M
3300022859Saline water microbial communities from Ace Lake, Antarctica - #799EnvironmentalOpen in IMG/M
3300022865Saline water microbial communities from Ace Lake, Antarctica - #728EnvironmentalOpen in IMG/M
3300022866Saline water microbial communities from Ace Lake, Antarctica - #369EnvironmentalOpen in IMG/M
3300024306Freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Miss_RepB_8hEnvironmentalOpen in IMG/M
3300024346Whole water sample coassemblyEnvironmentalOpen in IMG/M
3300024356Freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Miss_RepC_8dEnvironmentalOpen in IMG/M
3300025608Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_161SG_22_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300026097Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R2_restored_H2O_MG (SPAdes)EnvironmentalOpen in IMG/M
3300027191Estuarine microbial communities from the Columbia River estuary - metaG S.737 (SPAdes)EnvironmentalOpen in IMG/M
3300027299Freshwater microbial communities from St. Lawrence River, New York, United States - Law_Cont_RepB_8dEnvironmentalOpen in IMG/M
3300027563Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM15.SD (SPAdes)EnvironmentalOpen in IMG/M
3300027586Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG HU45MSRF (SPAdes)EnvironmentalOpen in IMG/M
3300027608Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRF (SPAdes)EnvironmentalOpen in IMG/M
3300027649Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ON33MSRF (SPAdes)EnvironmentalOpen in IMG/M
3300027730 (restricted)Freshwater microbial communities from meromictic Lake La Cruz, Castile-La Mancha, Spain - LaCruzMarch2015_8mEnvironmentalOpen in IMG/M
3300027741Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_131016_EF_MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300027754Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300027782Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140212_EF_MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300027970 (restricted)Freshwater microbial communities from meromictic Lake La Cruz, Castile-La Mancha, Spain - LaCruzMarch2015_14.5mEnvironmentalOpen in IMG/M
3300028025Subsurface sediment microbial communities from gas well in West Virginia, United States - MSEEL Well Study Marcellus 5H_FCEnvironmentalOpen in IMG/M
3300031758Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA123EnvironmentalOpen in IMG/M
3300031857Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125EnvironmentalOpen in IMG/M
3300031951Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA120EnvironmentalOpen in IMG/M
3300032050Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA122EnvironmentalOpen in IMG/M
3300032093Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA117EnvironmentalOpen in IMG/M
3300033992Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME16Jun2014-rr0035EnvironmentalOpen in IMG/M
3300034013Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME07Jun2018-rr0034EnvironmentalOpen in IMG/M
3300034022Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Apr2018-rr0058EnvironmentalOpen in IMG/M
3300034060Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME16May2013-rr0016EnvironmentalOpen in IMG/M
3300034068Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME13Apr2016-rr0031EnvironmentalOpen in IMG/M
3300034071Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME17Oct2008D10-rr0110EnvironmentalOpen in IMG/M
3300034082Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME05Jun2015-rr0088EnvironmentalOpen in IMG/M
3300034103Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME27Sep2002-rr0119EnvironmentalOpen in IMG/M
3300034104Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Aug2005-rr0120EnvironmentalOpen in IMG/M
3300034106Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME23Aug2013-rr0131EnvironmentalOpen in IMG/M
3300034111Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME03Oct2011-rr0186EnvironmentalOpen in IMG/M
3300034116Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-CONTROL-GENDONOREnvironmentalOpen in IMG/M
3300034117Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME18Jun2014-rr0124EnvironmentalOpen in IMG/M
3300034122Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME03Aug2014-rr0181EnvironmentalOpen in IMG/M
3300034168Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME06Apr2016-rr0183EnvironmentalOpen in IMG/M
3300034283Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME07Aug2003-rr0061EnvironmentalOpen in IMG/M
3300034355Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME18Oct2015-rr0135EnvironmentalOpen in IMG/M
3300034356Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME17Jun2014-rr0152EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
JGI12421J11937_1006173513300000756Freshwater And SedimentMTTIVHEEKTITLIDGTKIKVRPLKISLLRKFMKKFEGLGAVQ
B570J14230_1020747013300001282FreshwaterMATTVYEGAELTLMDGTKIKVRPLKISLLRPFMKKFEQVAL
GOS2236_104459213300001968MarineMATTTYEAQELTLIDGTKITVRPLKISLLRPFMKKFEGVAK
B570J29032_10911885923300002408FreshwaterMTTTTYEEQILTLIDGTKVTVRPLKISLLRPFMKKFEGVGA
B570J29032_10912534023300002408FreshwaterMATSTYEEVELVLLDGTKIKARPLKISLLRPFMKKFSELAEVAE
Ga0065166_1046997213300004112Freshwater LakeMATTINEEKTIKLFDGTEINIRPLKISLLRNFTKKFEQIQAVADDN
Ga0066179_1012425123300004126Freshwater LakeMATTVHEAHKISLIDGTEITLRPLKISLLRKFMKKFEGIAAVV
Ga0068876_1072080923300005527Freshwater LakeMATTTHEETILTLIDGTKVTVRPLKISLLRPFMKKFEGVG
Ga0049082_1011150523300005584Freshwater LenticMATTTYEEQTLTLIDGTKVTVRPLKISLLRPFMKKFEGVG
Ga0078894_1024551433300005662Freshwater LakeMATATEEKTVTLIDGTKIKVRPLKISLLRPFMKKFED
Ga0079957_116277433300005805LakeMATTVYEPKELTLMDGTTIQVRPLKISLLRNFMKKFEGVAAVAD
Ga0070744_1011729723300006484EstuarineMATTINEATQLTLIDGTVLNVRPLKISLLRDFMKE
Ga0103959_117592533300007214Freshwater LakeMATTKYETEQLTLIDGTEISVRPLKISLLRPFMKK
Ga0102863_101100553300007622EstuarineMGGINMATTVHEAHKISLIDGTEITLRPLKISLLRKFMKKFEGIAAV
Ga0102862_115559613300007670EstuarineMTTTVHEEKIITLIDGTKIKVRPLKISILCKFMKKFEGLG
Ga0105746_109202413300007973Estuary WaterMGGINMATTVHEEHKIKLIDGTEITLRPLKISLLRKFMKKFEGIA
Ga0114343_100340813300008110Freshwater, PlanktonMATTTHEAEKVTLIDGTIINVRPLKISLLRPFMKKFEGVAKVAE
Ga0114363_107679833300008266Freshwater, PlanktonMATTTHEETVLTLIDGTKVTVRPLKISLLRPFMKKFEGVGAVADNNE
Ga0104242_107218323300008962FreshwaterMATATEEKTITLIDGTKIKVRPLKISLLRPFMKKF
Ga0104242_108604023300008962FreshwaterMANTQEGTELTLIDGTKIKVRPLKLSLLRPFMSKFG
Ga0114973_1073799213300009068Freshwater LakeMTTTTYEENILTLIDGTKVTVRPLKISLLRPFMKKFE
Ga0105102_1062195413300009165Freshwater SedimentMSTEVYEEKVIKLINGTEIKVRPLKISLLRPFMKK
Ga0114974_1078923813300009183Freshwater LakeMATTVHEAHKVTLIDGTEITLRPLKISLLRKFMKKF
Ga0129333_1023859833300010354Freshwater To Marine Saline GradientMATTVHETKEIVLIDGTKIKVRPLKISLLRPFMKKFEGIAAV
Ga0129333_1172377413300010354Freshwater To Marine Saline GradientMATTKHETQELVLMDGTKIEVRPLKISLLRPFMKKFEGV
Ga0119951_114484023300012000FreshwaterMANTQEGTELTLIDGTKIKVRPLKISLLRPFMKKFE
Ga0164292_1021860713300013005FreshwaterMATTVHEGSELTLMDGTKIKVRPLKISLLRPFMKKF
Ga0164292_1035339813300013005FreshwaterMATTKYEAQKLTLMDGTEISVRPLKISLLRPFMAKFEG
(restricted) Ga0172372_1006924363300013132FreshwaterMATATEEKTVTLIDGTKIKVRPLKISLLRPFMKKFEDI
(restricted) Ga0172372_1032735313300013132FreshwaterMATTTYESQELTLMDGTKISVRPLKISLLRPFLTKFEK
Ga0177922_1011895513300013372FreshwaterMPTTKTDGTELVLMDGTKINVRPLKLSLLRPFMKKFEQVA
(restricted) Ga0172376_1026978123300014720FreshwaterMATTTYESQELTLMDGTKISVRPLKISLLRPFLTKFE
Ga0194112_1092711813300020109Freshwater LakeMATTVHEEKEITLIDGTKVSIRPLKISLLRQFMKKFEGLADV
Ga0211732_100146823300020141FreshwaterMATTVHEERVVTLIDGTKVKVRPLKVSLLRTFMKTFEGLGAVQADNDKS
Ga0211736_1102443023300020151FreshwaterMTTTVHEEKIITLIDGTKIKVRPLKISLLRKFMKKFEGLGAVQNDND
Ga0211734_1035811923300020159FreshwaterMTTTVHEEKTITLIDGTKIKVRPLKISLLRKFMKKFEGLGAVQNDND
Ga0211734_1132294323300020159FreshwaterMATAIHEGEELVLMDGTKIKVRPLKISLLRPFMQKF
Ga0211726_1001203313300020161FreshwaterMATTVHETQEVVLIDGTKVTVRPLKISLLRPFMKKFEGVAKV
Ga0211726_1093601323300020161FreshwaterMATATEEKTVTLIDGTKIKVRPLKISLLRPFMKKFE
Ga0211729_1114713813300020172FreshwaterMTTTVHEEKIITLIDGTKIKVRPLKISLLRKFMKKFEGLGAVQNDNDK
Ga0194134_1035499523300020179Freshwater LakeMATTVHEESVLTLIDGTEIKVRPLKISLLRPFMKKFEGV
Ga0194120_1035956723300020198Freshwater LakeMATTTYEAQELTLIDGTKITVRPLKISLLRPFMKKFEG
Ga0208052_12213913300020490FreshwaterMATTVKEAKTVTLLDGTKIDIRPLKISLLRPFMDK
Ga0207939_101799313300020536FreshwaterMATTTYEETTLTLIDGTKVTVRPLKISLLRPFMKKF
Ga0208227_102122313300020540FreshwaterMATTTYEAETLTLIDGTTIQVRPLKISLLKPFMKKFEGVTAVAEDNEKSMNLLLEC
Ga0208089_100543143300020543FreshwaterMATTTYEESTLTLIDGTKVTVRPLKISLLRPFMKKFEGVGA
Ga0208089_104023713300020543FreshwaterMTTTTYEENTLTLIDGTKVTVRPLKISLLRPFMKKFEGVGA
Ga0207909_105958923300020572FreshwaterMSTTVHETEKVKLIDGTEITVRPLKISLLRPFMKKFE
Ga0208485_104986023300020573FreshwaterMATTTYEEQILTLIDGTKVTVRPLKISLLRPFMKKFEG
Ga0208485_107148313300020573FreshwaterMATTTYEETTLTLIDGTKVTVRPLKISLLRPFMKKFEGV
Ga0194122_1021237133300021092Freshwater LakeMTSKEETVVVLIDGTKISVRPLKISLLRAFMKKFEGLAAV
Ga0194122_1029515023300021092Freshwater LakeMATTTYEAQELTLIDGTKITVRPLKISLLRPFMKKFEGV
Ga0194117_1018936513300021424Freshwater LakeMTSKEETVVVLIDGTKIGVRPLKISLLRAFMKKFEGLAAVAEDNP
Ga0222672_100834013300022859Saline WaterMATTVNEEKELTLIDGTKIKVRPLKISLLRPFMKKFEGIADVA
Ga0222668_105302523300022865Saline WaterMAVTINEENTLKLMDGSTITVRPLKISLLRSFMKKFEQVAQ
Ga0222651_100106713300022866Saline WaterMATTVNEEKELTLIDGTKIKVRPLKISLLRPFMKKFEGIA
Ga0255148_108004713300024306FreshwaterMATTIHEEKTLTLIDGTEIKVRPLKISLLRPFLKKFEGV
Ga0244775_1040713733300024346EstuarineMAVTVNEAQDIVLIDGTVISIRPLKISLLREFMKKFEGISAVAEDNDK
Ga0244775_1074597423300024346EstuarineMATTINEATQLTLIDGTVLNVRPLKISLLRDFMKEFEGIAK
Ga0255169_104241213300024356FreshwaterMATTVHEEKEITLIDGTKINIRPLKISLLRQFMKKFEGLSEV
Ga0209654_104833613300025608MarineMATTVNEEKELVLIDGTKIKVRPLKISLLRPFMKKF
Ga0209953_1001813103300026097Pond WaterMATTVNEEKELTLIDGTKIKVRPLKISLLRPFMKK
Ga0208021_101187413300027191EstuarineMATTVNENKVLKLIDGTEINVRPLKISLLRDFTKKFEDIADVADN
Ga0255124_106355613300027299FreshwaterMADKPSTTKNTDGKTITLMDGTEIVARPLKLSLLRPFMAKFS
Ga0209552_108333323300027563Freshwater LakeMATATEEKTVTMIDGTKIKVRPLKISLLRPFMKKFEDIAKVA
Ga0208966_107369823300027586Freshwater LenticMSTTVHEAEKVKLIDGTEITVRPLKISLLRPFMKKF
Ga0208974_107987313300027608Freshwater LenticMATTTYEEKILTLIDGTKVTVRPLKISLLRPFMKKFEGVGAV
Ga0208960_117335113300027649Freshwater LenticMATTTYEENTLTLIDGTKVTVRPLKISLLRPFMKKFEGVGA
(restricted) Ga0247833_119403113300027730FreshwaterMATTIYETKELQLIDGTTIIVRPLKISLLREFLKKFES
Ga0209085_103780443300027741Freshwater LakeMSTTINETKTVELLDGTTISVRPLKISLLRPFMKK
Ga0209596_120136213300027754Freshwater LakeMSTTVHETEKVKLIDGTEITVRPLKISLLRPFMKKF
Ga0209500_1011624813300027782Freshwater LakeMTTTVHEEKIITLIDGTKIKVRPLKISLLRKFMKKFEGLGAV
(restricted) Ga0247837_135566913300027970FreshwaterMATTVHEEKTISLIDGTSIKVRPLKISLLRPFMKKFEGIA
Ga0247723_103201413300028025Deep Subsurface SedimentMATTTYEEQILTLIDGTKVTVRPLKISLLRPFMKKFEGVGAVAE
Ga0315907_1028159913300031758FreshwaterMATTEHETKELVLMDGTKIQVRPLKISLLRPFMKKFEGV
Ga0315909_1066425513300031857FreshwaterMTTTTYEESTLTLIDGTKVTVRPLKISLLRPFMKKFEGVGA
Ga0315909_1073549813300031857FreshwaterMTTTTYEENTLTLIDGTKVTVRPLKISLLRPFMKKFEGVGAV
Ga0315904_1056736913300031951FreshwaterMATSTYEEVELVLLDGTKIKARPLKISLLRPFMKKFS
Ga0315904_1062797323300031951FreshwaterMATSTYEEVELVLLDGTKIKARPLKISLLRPFMKKFSESRGGK
Ga0315904_1084996213300031951FreshwaterVATTTHEPVQITLMDGTKVEVKPLKISLLKPFTKKFQ
Ga0315906_1102855613300032050FreshwaterMATTTHEETILTLIDGTKVTVRPLKISLLRPFMKKFEGVGAVADNNE
Ga0315902_1085217623300032093FreshwaterMATTTHEETILTLIDGTKVTVRPLKISLLRPFMKKFEGVGAV
Ga0334992_0535767_394_5013300033992FreshwaterMATTVKEAKTVTLLDGTKIDIRPLKISLLRPFVDKF
Ga0334991_0179930_2_1213300034013FreshwaterMAIATEEKTVTLIDGTKIKVRPLKISLLRPFMKKFEDIAK
Ga0335005_0407450_653_7783300034022FreshwaterMATTVFEKTDLVLMDGTKISMRPLKISLLRKFMKKFDTVVEV
Ga0334983_0699076_3_1193300034060FreshwaterMANTQEGTELTLIDGTKIKVRPLKISLLRPFMSKFEQVA
Ga0334990_0607865_461_5743300034068FreshwaterMATTVHEAQEVVLIDGTKVTVRPLKISLLRPFMKKFEG
Ga0335028_0231799_1_1293300034071FreshwaterMATTTYEEQTLTLIDGTKVTVRPLKISLLRPFMKKFEGVGAVA
Ga0335020_0203737_3_1313300034082FreshwaterMSTTVHEAEKVKLIDGTEITVRPLKISLLRPFMKKFEGVAKVA
Ga0335020_0321193_2_1213300034082FreshwaterMSTTVHETEKVKLIDGTEITVRPLKISLLRPFMKKFEGVA
Ga0335030_0148438_3_1253300034103FreshwaterMATTVNEEKTVTLIDGTKIKVRPLKISLLREFMKKFEGVAA
Ga0335031_0223154_3_1193300034104FreshwaterMATTTYEENTLTLIDGTKVTVRPLKISLLRPFMKKFEGV
Ga0335036_0237121_2_1363300034106FreshwaterMATTTHEEQILTLIDGTKVTVRPLKISLLRPFMKKFEGVGAVADN
Ga0335063_0130517_2_1273300034111FreshwaterMAAATKADENVVVLIDGTKVSVRPLKISLLRPFMKKFEGIAA
Ga0335068_0216935_881_9943300034116FreshwaterMATTTYEETTLTLIDGTKVTVRPLKISLLRPFMKKFEG
Ga0335033_0096543_1_1203300034117FreshwaterMTTTVNETKTISLIDGTTISVRPLRISLLRDFMDKFEKIA
Ga0335060_0631817_2_1063300034122FreshwaterMATTTYEEQTLTLIDGTKVTVRPLKISLLRPFMKK
Ga0335061_0263610_798_9053300034168FreshwaterMATTVFEKTDLVLMDGTKISMRPLKISLLRKFMKKF
Ga0335007_0293161_3_1343300034283FreshwaterMTTTTYEENNLTLIDGTKITVRPLKISLLRPFMKKFEGVGAVAD
Ga0335039_0256518_2_1303300034355FreshwaterMATTVHETKEIALIDGTKIKVRPLKISLLRPFMKKFEGIAAVA
Ga0335048_0134825_1309_14343300034356FreshwaterMATTVHEGEELVLMDGTKIKVRSLKISLLRPFMKKFEQVAGV
Ga0335048_0562425_420_5333300034356FreshwaterMATTTYEEQTLTLIDGTKVTVRPLKISLLRPFMKKFEG


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