Metagenome / Metatranscriptome Family F101109

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F101109
Family Type	Metagenome / Metatranscriptome
Number of Sequences	102
Average Sequence Length	63 residues
Representative Sequence	LRALRVAVDTVQLPLPELVPAGPVERWWSLPESTRTEVLTLLARLIARGVLIDPDAAAVIGVGDE
Number of Associated Samples	96
Number of Associated Scaffolds	102

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	67.65 %
% of genes near scaffold ends (potentially truncated)	26.47 %
% of genes from short scaffolds (< 2000 bps)	89.22 %
Associated GOLD sequencing projects	92
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.44

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (97.059 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (21.569 % of family members)
Environment Ontology (ENVO)	Unclassified (26.471 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (46.078 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 26.88% β-sheet: 0.00% Coil/Unstructured: 73.12%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.44
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.44
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 102 Family Scaffolds
PF00239	Resolvase	29.41
PF07508	Recombinase	14.71
PF01695	IstB_IS21	12.75
PF13408	Zn_ribbon_recom	3.92
PF00982	Glyco_transf_20	0.98
PF00353	HemolysinCabind	0.98

COG ID	Name	Functional Category	% Frequency in 102 Family Scaffolds
COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	Replication, recombination and repair [L]	44.12
COG2452	Predicted site-specific integrase-resolvase	Mobilome: prophages, transposons [X]	29.41
COG1484	DNA replication protein DnaC	Replication, recombination and repair [L]	12.75
COG0380	Trehalose-6-phosphate synthase, GT20 family	Carbohydrate transport and metabolism [G]	0.98

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	97.06 %
Unclassified	root	N/A	2.94 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	97.06 %
Unclassified	root	N/A	2.94 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	97.06 %
Unclassified	root	N/A	2.94 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	62.75 %
Unclassified	root	N/A	2.94 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.98 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	62.75 %
Unclassified	root	N/A	2.94 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	0.98 %

Name	Rank	Taxonomy	Distribution
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	52.94 %
Acidimicrobiia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia	3.92 %
Unclassified	root	N/A	2.94 %
Acidobacteria bacterium SCN 69-37	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium SCN 69-37	0.98 %

Name	Rank	Taxonomy	Distribution
Corynebacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	38.24 %
Acidimicrobiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales	3.92 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	2.94 %
Unclassified	root	N/A	2.94 %
Acidobacteria bacterium SCN 69-37	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium SCN 69-37	0.98 %

Name	Rank	Taxonomy	Distribution
Mycobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae	22.55 %
Acidimicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae	3.92 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2.94 %
Unclassified	root	N/A	2.94 %
Acidobacteria bacterium SCN 69-37	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium SCN 69-37	0.98 %

Name	Rank	Taxonomy	Distribution
Mycobacterium	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium	22.55 %
Acidiferrimicrobium	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae → Acidiferrimicrobium	3.92 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2.94 %
Unclassified	root	N/A	2.94 %
Acidobacteria bacterium SCN 69-37	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium SCN 69-37	0.98 %

Name	Rank	Taxonomy	Distribution
Mycobacterium kansasii	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → Mycobacterium kansasii	20.59 %
unclassified Acidiferrimicrobium	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae → Acidiferrimicrobium → unclassified Acidiferrimicrobium	3.92 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2.94 %
Unclassified	root	N/A	2.94 %
Acidobacteria bacterium SCN 69-37	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium SCN 69-37	0.98 %

Name	Rank	Taxonomy	Distribution
Mycobacterium kansasii	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → Mycobacterium kansasii	20.59 %
Acidiferrimicrobium sp. IK	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae → Acidiferrimicrobium → unclassified Acidiferrimicrobium → Acidiferrimicrobium sp. IK	3.92 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2.94 %
Unclassified	root	N/A	2.94 %
Acidobacteria bacterium SCN 69-37	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium SCN 69-37	0.98 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000956\|JGI10216J12902_111873559	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	616	Open in IMG/M
3300002568\|C688J35102_118076284	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	527	Open in IMG/M
3300003911\|JGI25405J52794_10011800	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → Mycobacterium kansasii	1675	Open in IMG/M
3300004479\|Ga0062595_100891309	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → Mycobacterium kansasii	748	Open in IMG/M
3300005093\|Ga0062594_101490736	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → Mycobacterium kansasii	693	Open in IMG/M
3300005329\|Ga0070683_100856475	All Organisms → cellular organisms → Bacteria	872	Open in IMG/M
3300005329\|Ga0070683_100997584	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → Mycobacterium kansasii	804	Open in IMG/M
3300005356\|Ga0070674_101424481	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → Mycobacterium kansasii	621	Open in IMG/M
3300005434\|Ga0070709_11386082	All Organisms → cellular organisms → Bacteria	569	Open in IMG/M
3300005437\|Ga0070710_11211823	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → Mycobacterium kansasii	558	Open in IMG/M
3300005439\|Ga0070711_100938773	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → Mycobacterium kansasii	740	Open in IMG/M
3300005543\|Ga0070672_101316976	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → Mycobacterium kansasii	645	Open in IMG/M
3300005553\|Ga0066695_10742678	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → Mycobacterium kansasii	571	Open in IMG/M
3300005556\|Ga0066707_10502687	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → Mycobacterium kansasii	786	Open in IMG/M
3300005615\|Ga0070702_101236854	All Organisms → cellular organisms → Bacteria	603	Open in IMG/M
3300005616\|Ga0068852_101881061	All Organisms → cellular organisms → Bacteria	621	Open in IMG/M
3300005618\|Ga0068864_102076510	All Organisms → cellular organisms → Bacteria	575	Open in IMG/M
3300005719\|Ga0068861_102674330	All Organisms → cellular organisms → Bacteria	503	Open in IMG/M
3300005834\|Ga0068851_10771737	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → Mycobacterium kansasii	596	Open in IMG/M
3300005841\|Ga0068863_102492055	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → Mycobacterium kansasii	527	Open in IMG/M
3300005981\|Ga0081538_10103989	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium	1419	Open in IMG/M
3300005983\|Ga0081540_1062744	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → Mycobacterium kansasii	1763	Open in IMG/M
3300005983\|Ga0081540_1183148	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → Mycobacterium kansasii	781	Open in IMG/M
3300006058\|Ga0075432_10011000	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → Mycobacterium kansasii	3074	Open in IMG/M
3300006576\|Ga0074047_12023051	All Organisms → cellular organisms → Bacteria	848	Open in IMG/M
3300006604\|Ga0074060_11672505	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → Mycobacterium kansasii	525	Open in IMG/M
3300006844\|Ga0075428_100347180	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → Mycobacterium kansasii	1593	Open in IMG/M
3300006914\|Ga0075436_100696096	All Organisms → cellular organisms → Bacteria	753	Open in IMG/M
3300006918\|Ga0079216_11466949	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → Mycobacterium kansasii	569	Open in IMG/M
3300006953\|Ga0074063_10067734	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → Mycobacterium kansasii	655	Open in IMG/M
3300007004\|Ga0079218_10524727	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1056	Open in IMG/M
3300009098\|Ga0105245_11275076	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	783	Open in IMG/M
3300009101\|Ga0105247_10992292	All Organisms → cellular organisms → Bacteria	655	Open in IMG/M
3300009148\|Ga0105243_10993773	All Organisms → cellular organisms → Bacteria	841	Open in IMG/M
3300009162\|Ga0075423_11384013	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	753	Open in IMG/M
3300009176\|Ga0105242_12334809	Not Available	581	Open in IMG/M
3300009545\|Ga0105237_10864350	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	911	Open in IMG/M
3300009553\|Ga0105249_12325888	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	609	Open in IMG/M
3300010037\|Ga0126304_10363511	All Organisms → cellular organisms → Bacteria	963	Open in IMG/M
3300010038\|Ga0126315_10009389	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	4577	Open in IMG/M
3300010039\|Ga0126309_10361159	All Organisms → cellular organisms → Bacteria	858	Open in IMG/M
3300010166\|Ga0126306_10050052	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2890	Open in IMG/M
3300010373\|Ga0134128_11201150	All Organisms → cellular organisms → Bacteria	837	Open in IMG/M
3300012201\|Ga0137365_10403704	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1008	Open in IMG/M
3300012349\|Ga0137387_10381739	All Organisms → cellular organisms → Bacteria	1021	Open in IMG/M
3300012951\|Ga0164300_10428429	All Organisms → cellular organisms → Bacteria	735	Open in IMG/M
3300012951\|Ga0164300_10889774	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	562	Open in IMG/M
3300012957\|Ga0164303_10012276	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3031	Open in IMG/M
3300012958\|Ga0164299_10857348	Not Available	654	Open in IMG/M
3300012984\|Ga0164309_11460237	All Organisms → cellular organisms → Bacteria	584	Open in IMG/M
3300012985\|Ga0164308_10035367	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3094	Open in IMG/M
3300012987\|Ga0164307_10507318	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	913	Open in IMG/M
3300013296\|Ga0157374_11426533	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	715	Open in IMG/M
3300014326\|Ga0157380_12693235	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	564	Open in IMG/M
3300014498\|Ga0182019_10129171	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1580	Open in IMG/M
3300016445\|Ga0182038_12054832	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	518	Open in IMG/M
3300017965\|Ga0190266_10082921	All Organisms → cellular organisms → Bacteria	1261	Open in IMG/M
3300018028\|Ga0184608_10125742	All Organisms → cellular organisms → Bacteria	1091	Open in IMG/M
3300018054\|Ga0184621_10159860	All Organisms → cellular organisms → Bacteria	811	Open in IMG/M
3300018432\|Ga0190275_10393985	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1392	Open in IMG/M
3300018432\|Ga0190275_13422602	All Organisms → cellular organisms → Bacteria	514	Open in IMG/M
3300018466\|Ga0190268_10710408	All Organisms → cellular organisms → Bacteria	740	Open in IMG/M
3300018469\|Ga0190270_12247194	All Organisms → cellular organisms → Bacteria	606	Open in IMG/M
3300018482\|Ga0066669_12142968	All Organisms → cellular organisms → Bacteria	528	Open in IMG/M
3300018920\|Ga0190273_11385931	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	613	Open in IMG/M
3300019361\|Ga0173482_10436127	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	619	Open in IMG/M
3300019377\|Ga0190264_10006497	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium	3193	Open in IMG/M
3300019767\|Ga0190267_10111662	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → Mycobacterium kansasii	1112	Open in IMG/M
3300019767\|Ga0190267_10628987	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	672	Open in IMG/M
3300020582\|Ga0210395_11247896	All Organisms → cellular organisms → Bacteria	545	Open in IMG/M
3300021510\|Ga0222621_1013254	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae → Acidiferrimicrobium → unclassified Acidiferrimicrobium → Acidiferrimicrobium sp. IK	1592	Open in IMG/M
3300022694\|Ga0222623_10118827	All Organisms → cellular organisms → Bacteria	1029	Open in IMG/M
3300025899\|Ga0207642_10659894	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium SCN 69-37	656	Open in IMG/M
3300025916\|Ga0207663_10809630	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	746	Open in IMG/M
3300025919\|Ga0207657_11284224	All Organisms → cellular organisms → Bacteria	554	Open in IMG/M
3300025927\|Ga0207687_11089347	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → Mycobacterium kansasii	686	Open in IMG/M
3300025927\|Ga0207687_11632582	Not Available	553	Open in IMG/M
3300025939\|Ga0207665_10920988	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	694	Open in IMG/M
3300027907\|Ga0207428_10060888	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2990	Open in IMG/M
3300028679\|Ga0302169_10014178	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae → Acidiferrimicrobium → unclassified Acidiferrimicrobium → Acidiferrimicrobium sp. IK	1855	Open in IMG/M
3300028704\|Ga0307321_1087720	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	622	Open in IMG/M
3300028707\|Ga0307291_1178820	All Organisms → cellular organisms → Bacteria	545	Open in IMG/M
3300028732\|Ga0302264_1064554	All Organisms → cellular organisms → Bacteria	858	Open in IMG/M
3300028733\|Ga0302261_1088830	All Organisms → cellular organisms → Bacteria	729	Open in IMG/M
3300028739\|Ga0302205_10166885	All Organisms → cellular organisms → Bacteria	563	Open in IMG/M
3300028799\|Ga0307284_10387228	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	568	Open in IMG/M
3300028828\|Ga0307312_10054146	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae → Acidiferrimicrobium → unclassified Acidiferrimicrobium → Acidiferrimicrobium sp. IK	2404	Open in IMG/M
3300028878\|Ga0307278_10488163	All Organisms → cellular organisms → Bacteria	538	Open in IMG/M
3300030019\|Ga0311348_10079254	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae → Acidiferrimicrobium → unclassified Acidiferrimicrobium → Acidiferrimicrobium sp. IK	2415	Open in IMG/M
3300030047\|Ga0302286_10305594	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	800	Open in IMG/M
3300030052\|Ga0302217_10184396	All Organisms → cellular organisms → Bacteria	502	Open in IMG/M
3300030336\|Ga0247826_11056096	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	647	Open in IMG/M
3300030339\|Ga0311360_10278198	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1356	Open in IMG/M
3300031548\|Ga0307408_101488562	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	640	Open in IMG/M
3300031720\|Ga0307469_11811496	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	590	Open in IMG/M
3300031910\|Ga0306923_10349440	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1686	Open in IMG/M
3300031912\|Ga0306921_12510665	All Organisms → cellular organisms → Bacteria	535	Open in IMG/M
3300032001\|Ga0306922_11488936	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	677	Open in IMG/M
3300032126\|Ga0307415_101186285	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	719	Open in IMG/M
3300032205\|Ga0307472_100031432	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3085	Open in IMG/M
3300032261\|Ga0306920_100210704	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2900	Open in IMG/M
3300034147\|Ga0364925_0101684	All Organisms → cellular organisms → Bacteria	1020	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	70.59%
Host-Associated	Host-Associated	29.41%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	66.67%
Plants	Host-Associated → Plants	29.41%
Aquatic	Environmental → Aquatic	3.92%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	57.84%
Rhizosphere	Host-Associated → Plants → Rhizosphere	19.61%
Rhizoplane	Host-Associated → Plants → Rhizoplane	8.82%
Peat	Environmental → Terrestrial → Peat	7.84%
Sediment	Environmental → Aquatic → Sediment	3.92%
Floodplain	Environmental → Terrestrial → Floodplain	0.98%
Roots	Host-Associated → Plants → Roots	0.98%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	48.04%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	16.67%
Loam	Environmental → Terrestrial → Soil → Loam	8.82%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	8.82%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	7.84%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	3.92%
Soil	Host-Associated → Plants → Rhizosphere → Soil	2.94%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.98%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	0.98%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.98%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	31.37%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	16.67%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	8.82%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	7.84%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	7.84%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	7.84%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	3.92%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	3.92%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	3.92%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	2.94%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.98%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	0.98%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.98%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	0.98%
Unclassified	Host-Associated → Plants → Roots → Rhizosphere → Unclassified	0.98%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	21.57%
Fen	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen	6.86%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	5.88%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	4.90%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	4.90%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	4.90%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	3.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	2.94%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	2.94%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	2.94%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	1.96%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	1.96%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	1.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.96%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	1.96%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.96%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	1.96%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	1.96%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	1.96%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.96%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	1.96%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.98%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.98%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.98%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.98%
Fen	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Fen	0.98%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.98%
Bog	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog	0.98%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	0.98%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.98%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Unclassified → Tabebuia Heterophylla Rhizosphere	0.98%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.98%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.98%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.98%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.98%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300002568	Grasslands soil microbial communities from Hopland, California, USA - 2	Environmental	Open in IMG/M
3300003911	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005329	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG	Environmental	Open in IMG/M
3300005356	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG	Host-Associated	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005543	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG	Host-Associated	Open in IMG/M
3300005553	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_144	Environmental	Open in IMG/M
3300005556	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_156	Environmental	Open in IMG/M
3300005615	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG	Environmental	Open in IMG/M
3300005616	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2	Host-Associated	Open in IMG/M
3300005618	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2	Host-Associated	Open in IMG/M
3300005719	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2	Host-Associated	Open in IMG/M
3300005834	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2	Host-Associated	Open in IMG/M
3300005841	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2	Host-Associated	Open in IMG/M
3300005981	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1	Host-Associated	Open in IMG/M
3300005983	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1	Host-Associated	Open in IMG/M
3300006058	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1	Host-Associated	Open in IMG/M
3300006576	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLPA (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006604	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLMB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006914	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5	Host-Associated	Open in IMG/M
3300006918	Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS100	Environmental	Open in IMG/M
3300006953	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHMB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300007004	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost	Environmental	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009101	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG	Host-Associated	Open in IMG/M
3300009148	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300009545	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300010037	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot25	Environmental	Open in IMG/M
3300010038	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot106	Environmental	Open in IMG/M
3300010039	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot56	Environmental	Open in IMG/M
3300010166	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot27	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300012201	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaG	Environmental	Open in IMG/M
3300012349	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Sage2_R_115_16 metaG	Environmental	Open in IMG/M
3300012951	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MG	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300012958	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG	Environmental	Open in IMG/M
3300012984	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_247_MG	Environmental	Open in IMG/M
3300012985	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MG	Environmental	Open in IMG/M
3300012987	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_243_MG	Environmental	Open in IMG/M
3300013296	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG	Host-Associated	Open in IMG/M
3300014326	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG	Host-Associated	Open in IMG/M
3300014498	Permafrost microbial communities from Stordalen Mire, Sweden - 812E2M metaG	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300017965	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 220 T	Environmental	Open in IMG/M
3300018028	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_coex	Environmental	Open in IMG/M
3300018054	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_b1	Environmental	Open in IMG/M
3300018432	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 550 T	Environmental	Open in IMG/M
3300018466	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 T	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300018920	Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 IS	Environmental	Open in IMG/M
3300019361	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S133-311R-2 (version 2)	Environmental	Open in IMG/M
3300019377	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 112 T	Environmental	Open in IMG/M
3300019767	Populus adjacent soil microbial communities from riparian zone of Oak Creek, Arizona, USA - 239 T	Environmental	Open in IMG/M
3300020582	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O	Environmental	Open in IMG/M
3300021510	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_coex	Environmental	Open in IMG/M
3300022694	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_30_coex	Environmental	Open in IMG/M
3300025899	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025916	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025919	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025927	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025939	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300027907	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)	Host-Associated	Open in IMG/M
3300028679	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Fen_N1_3	Environmental	Open in IMG/M
3300028704	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_379	Environmental	Open in IMG/M
3300028707	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_148	Environmental	Open in IMG/M
3300028732	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Fen_N3_4	Environmental	Open in IMG/M
3300028733	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Fen_E2_4	Environmental	Open in IMG/M
3300028739	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Fen_E1_3	Environmental	Open in IMG/M
3300028799	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_123	Environmental	Open in IMG/M
3300028828	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_202	Environmental	Open in IMG/M
3300028878	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_117	Environmental	Open in IMG/M
3300030019	II_Fen_E2 coassembly	Environmental	Open in IMG/M
3300030047	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Fen_E2_3	Environmental	Open in IMG/M
3300030052	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Fen_N3_3	Environmental	Open in IMG/M
3300030336	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day1	Environmental	Open in IMG/M
3300030339	III_Bog_N1 coassembly	Environmental	Open in IMG/M
3300031548	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3	Host-Associated	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032126	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2	Host-Associated	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300034147	Sediment microbial communities from East River floodplain, Colorado, United States - 44_j17	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI10216J12902_1118735592	3300000956	Soil	LRALRVAADIVQLTLPDLGPARPVERWWSLPEATRSEVLTLLARLIARGVLIDPNFATEERSGNE*
C688J35102_1180762842	3300002568	Soil	LRALRVAADTVQLALPDLGLARPAERWWSLPESTRSEVLTLLARLIARSVLIEADDATHERGGGDE*
JGI25405J52794_100118002	3300003911	Tabebuia Heterophylla Rhizosphere	LRALRVARDTVQLTLPELAPPPPVERWLLLPETARREVVMLLARLIARSVLINPGCDPGEEVGDE*
Ga0062595_1008913092	3300004479	Soil	LRALRVAVDPVQLTLPQVVAVRPAERWWLLPESTRGEVLALLARLIARGVLVDPDCASPRDRCGDE*
Ga0062594_1014907362	3300005093	Soil	LRALRVAPDTVQLVLPDLTPAVPAQRWWLLPETTRREVVTLLARLIARGVLIEPDPAADPGRTGDE*
Ga0070683_1008564752	3300005329	Corn Rhizosphere	LRALRVAPDTVQLVLPDLTPALPTQRWWLLPETTRREVVTLLARLIARGVLIDLDAAEPDPSVVGTASDD*
Ga0070683_1009975842	3300005329	Corn Rhizosphere	RALRVAPDTVQLVLPDLPPAVPAQRWWLLPETTRCEVVTLLARLIARGVLIEPDPSADSGRNVGE*
Ga0070674_1014244812	3300005356	Miscanthus Rhizosphere	LRALRVARDTIQLTLPDLAPPPPGERWWLLPEVTRAEVVTLLARLIARSVLIDSDPAVEDEESCGE*
Ga0070709_113860821	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	LRALRVAVDPVQLTLPQVGAVRPAERWWLLPESTRGEVLALLARLIARGVLVDPDCASPWDRCGDE*
Ga0070710_112118232	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	LRALRVAADTVQLPLPDLASARPAERWWLLPDSVRGEVLMLLARLIARGVLIDDSEAGRCGDE*
Ga0070711_1009387732	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	LRALRVAVDPVQLTLPQVGAVRPAERWWSLPESTRGEVLALLARLIARGVLIDPDSASSPGSVRR*
Ga0070672_1013169762	3300005543	Miscanthus Rhizosphere	LRALRVAPDTVQLVLPDLTPAAPEQRWWLLPETTRREVVTLLARLIARGVLIEPDPAADPGRTGDE*
Ga0066695_107426782	3300005553	Soil	LRALRVAADPVQLALPDLDPAGPAERWWSLPEATRSEVLRLLARLIARGVLIDADTAAVNDGPLR*
Ga0066707_105026872	3300005556	Soil	LRALRVAVDPVQLTLPQVGAVRPAERWWSLPESTRGEVLALLARLIARGVLIDPDSASPRDRCGDE*
Ga0070702_1012368541	3300005615	Corn, Switchgrass And Miscanthus Rhizosphere	LRALRVAVDPVQLTLPQVGAVRPAERWWLLPESTRGEVLALLARLIARGVLVDPDCASPRDRCGDE*
Ga0068852_1018810612	3300005616	Corn Rhizosphere	LRALRVAPDTVQLVLPDLTPAAPAQRWWLLPETTRREVVTLLARLIARGVLIEPDRAADSGGTGDE*
Ga0068864_1020765102	3300005618	Switchgrass Rhizosphere	LRALRVAPDTVQLVLPDLTPAAPAQRWWLLPETTRREVVTLLARLIARGVLIKPDRAADSGGTGDE*
Ga0068861_1026743302	3300005719	Switchgrass Rhizosphere	LRALRVARDTIQLTLPDFAPPAPAQRWWLLPEATRAEVVTLLARLIARSVLIDSGPAGEDESRGDE*
Ga0068851_107717372	3300005834	Corn Rhizosphere	LRALRVAPDTVQLVLPDLTPAAPAQRWWLLPETTRREVVTLLARLIARGVLIEPD
Ga0068863_1024920552	3300005841	Switchgrass Rhizosphere	LRALRVAPDTVQLVLPDLPPAVPAQRWWLLPETTRCEVVTLLARLIARGVLIEPDPSADSGRNVGE*
Ga0081538_101039891	3300005981	Tabebuia Heterophylla Rhizosphere	LRALRVAADIVQLALPDLGPACPAERWWALPEATRSEVLALLARLIARGVLINCDTAGDGSGEGDE*
Ga0081540_10627442	3300005983	Tabebuia Heterophylla Rhizosphere	LRALRVVADTVQLVLPELEPARPVERWWSLPESTRSEVLTLLARLIARGVLIDLDDPERGDGDE*
Ga0081540_11831482	3300005983	Tabebuia Heterophylla Rhizosphere	LRALRVAADTVQLPLPDVASARPAERWWLLPDSVRGEVLNLLARLIARGVLIDSEAGRCGDE*
Ga0075432_100110002	3300006058	Populus Rhizosphere	LRALRVAADIVQLTLPDLEPACPADRWWSLPESTRSEVVTLLARLIARGVLIDCDAAGDGSGDGDE*
Ga0074047_120230512	3300006576	Soil	LRALRVAPDTVQLALPDLAPAPAAERWWSLPEATRSEVLTLLARLIARGVLIDLNPATEERSGNE*
Ga0074060_116725051	3300006604	Soil	LRALRVAADTVQLALPDLAGVGPAQRWWSLPESTRREVLTLLARLIARGVLI
Ga0075428_1003471802	3300006844	Populus Rhizosphere	LRALRVAPDTVQLTLPELAPAPPGERWWSLPDTTRREVVTLLARLIARSVVIDPDSGPDEEVGR*
Ga0075436_1006960962	3300006914	Populus Rhizosphere	LRALRVAVDPVQLTLPQVGAVRPAERWWSLPESTRGEVLALLARLIARGVLVDPDCASPWDRCGDE*
Ga0079216_114669492	3300006918	Agricultural Soil	LRALRVAADIVQLTLPDLGPAGPAERWWSLPESTRSEVVTLLARLIARGVLIAPI
Ga0074063_100677341	3300006953	Soil	LRALRVAADTVQLPLPDLASARPAERWWLLPDSVRGEVLMLLARLIARGVLIDDSEAGRCGDE
Ga0079218_105247271	3300007004	Agricultural Soil	LRALRVAADIVQLTLPDLGPAGPVERWWSLPESTRSEVVTLLARLIARGVLIAPDTA
Ga0105245_112750763	3300009098	Miscanthus Rhizosphere	LRALRVAADTVQLPLPDVASARPAERWWLLPDSVRGEVLMLLARLIARGVLIDDSEAGRCGDE*
Ga0105247_109922921	3300009101	Switchgrass Rhizosphere	VDPVQLTLPQVGAVRAAERWWSLPESTRGEVLALLARLIARGVLIDDSEAGRCGDE*
Ga0105243_109937731	3300009148	Miscanthus Rhizosphere	RALRVARDTIQLTLPDFAPQAPAQRWWLLPEATRSEVVTLLARLIARSVLIDSDPAVEDEESCDE*
Ga0075423_113840132	3300009162	Populus Rhizosphere	LRVAIDPVQLTLPQVGAVRPAERWWSLPESTRGEVLALLARLIARGVLIDPDSASSPGSVRR*
Ga0105242_123348092	3300009176	Miscanthus Rhizosphere	LRVAVDPVQLTLPQVGAVRPAERWWLLPESTRGEVLALLARLIARGVLVDPDCASPWDRCGDE*
Ga0105237_108643503	3300009545	Corn Rhizosphere	LRALRVAVDPVQLTLPQVGAVRPAERWWLLPESTRGEVLALLARLIARGVLIDPDCASPRDRCGDE*
Ga0105249_123258881	3300009553	Switchgrass Rhizosphere	LRVLRVARDTIQLTLPDFAPPAPAQRWWLLPEATRSEVVTLLARLIARSVLIDSGPVGEVESRGD
Ga0126304_103635112	3300010037	Serpentine Soil	LRALRVAPDTVQLVLPDFTPAVPAQRWLLLPDTTRREVVTLLARLIARSVLIDPDSGPDEEVVDE*
Ga0126315_100093892	3300010038	Serpentine Soil	LRALRVAPDTVQLVLPDFTPAVPAQRWLLLPDTTRREVVTLLARLIVRSVLIDPDSGPDEEVVDE*
Ga0126309_103611592	3300010039	Serpentine Soil	LRALRVAAETLQLALPDLDPVRPVDRWWSLPESTRSEVLTLLARLIARGVLIDPDATGGWGEGDE*
Ga0126306_100500522	3300010166	Serpentine Soil	LRALRVAADIVQLALPDLGPAGPAERWWSLPESTRSEVVTLLARLIARGVLITPDTAGDGPDDRDD*
Ga0134128_112011502	3300010373	Terrestrial Soil	AADTVQLPLPDLASARPAERWWLLPDSVRGEVLMLLARLIAGGVLIDSEAGRCGDE*
Ga0137365_104037042	3300012201	Vadose Zone Soil	LRALRVAADTVQLALPDLGPARPAERWWTLPQSTRSEVLTLLARLIARSVLIDSDAATDERGGGDE*
Ga0137387_103817391	3300012349	Vadose Zone Soil	LTVAADNVQLALPDLGPARPAERWWTLPQSTRSEVLTLLARLIARSVLIDSDAATDERGGGDE*
Ga0164300_104284292	3300012951	Soil	LRALRVAPDTVQLVLPDLTPAAPAQQWWLLPETTRREVVTLLARLIARGVLIEPDPSADSGRNVGE*
Ga0164300_108897742	3300012951	Soil	LRVAADTVQLPLPDLASARPAERWWLLPDSVRGEVLMLLARLIARGVLIDDSEAGRCGDE
Ga0164303_100122763	3300012957	Soil	VQLPLPDLASAWPAERWWLLPDSVRGEVLMLLARLIARGVLSDDSEAGRCGDE*
Ga0164299_108573482	3300012958	Soil	LRALRVALDTVQLVLPDLPPAVPAQRWWLLPETTRREVVTLLARLIARGVLIEPDPSADSGRNVGE*
Ga0164309_114602371	3300012984	Soil	RVAPDTVQLVLPDLTPAAPEQRWWLLPETTRREVVTLLARLIARGVLIEPDPAADPGRTGDE*
Ga0164308_100353672	3300012985	Soil	LRVAADTVQLPLPDVASARPAERWWLLPDSVRGEVLMLLARLIARGVLIDDSEAGRCGDE
Ga0164307_105073182	3300012987	Soil	VQLPLPDLASARPAERWWLLPDSVRGEVLMLLARLIARGVLIDDSEAGRCGDE*
Ga0157374_114265332	3300013296	Miscanthus Rhizosphere	LRVAVDPVQLTLPQVGAVRPAERWWLLPESTRGEVLALLARLIARGVLIDPDCASPRDRCGDE*
Ga0157380_126932351	3300014326	Switchgrass Rhizosphere	LRALRVAVDPVQLTLPQVGAVRRAERWWLLPESTRGEVLALLARLIARGVLIDDSEAGRCGDE*
Ga0182019_101291712	3300014498	Fen	LRALRVAVETVQLPLPELVPAGPVERWWSLPESTRTEVLTLLARLIARGVLIDPDAAAVIGVGDE*
Ga0182038_120548321	3300016445	Soil	LRALRVAVDPVQLTLPQVGAARPAERWWSLPESTRGEVLALLAWLIARGVLIDPDCASARDRCGDE
Ga0190266_100829212	3300017965	Soil	LRALRVAPDTVQLALPDLGPARPADRWWSLPESTRGEVLTLLARLIARGVLIAPDTAGDGSGDGDG
Ga0184608_101257422	3300018028	Groundwater Sediment	TYLRALRVAPDTVQLTLPELAPAPPGERWWSLPDTTRREVVTLLARLIARSVVIDPDSGPDEEVG
Ga0184621_101598602	3300018054	Groundwater Sediment	TYLRALRVAPDTVQLTLPELAPAPPGERWWSLPDTTRREVVTLLARLIARSVVIDPDSGPDEEVGR
Ga0190275_103939851	3300018432	Soil	LRALRVARDTIQLTLPDFAPPAPAQRWWLLPEATRSEVVTLLARLIARSVLIDSGPAVEDEESCDE
Ga0190275_134226022	3300018432	Soil	LRALRVAPDTVQLVLPDLTPAVPAQRWWLLPETTRREVVTLLARLIARGVLIEPDPAADPGRTGDE
Ga0190268_107104082	3300018466	Soil	LRALRVARDTIQLTLPDLAPPPPGERWWSLPEVTRAEVVTLLARLIARSVLIDSDPTVEDEESCGE
Ga0190270_122471942	3300018469	Soil	LRALRVAPDTVQLTLPELAPAPPAQRWWLLPDSTRREVVTLLARLIARSLLIDPDAADASEDGRSGDE
Ga0066669_121429682	3300018482	Grasslands Soil	TLPQVGAVRPAERWWSLPESTRGEVLALLARLIARGVLIDPDSASPRDRCGDE
Ga0190273_113859311	3300018920	Soil	LRALRVAPDTVQLVLPDLTPAVPAQRWWLLPETTRREVVTLLARLIARGVLIEPDPAADPGRTGHE
Ga0173482_104361271	3300019361	Soil	LRALRVAPDTVQLVLPDLTPAAPAQRWWLLPETTRREVVTMLARLIARGVLIEPDPAADPGRTGDE
Ga0190264_100064972	3300019377	Soil	LRALRVAAETVQLALPDLDPARPVDRWWSLPESTRSEVLTLLARLIARGVLIDPDPTRGWGDGDE
Ga0190267_101116622	3300019767	Soil	LRALRVARDTIQLTLPDFAPPAPAQRWWLLPEATRSEVVTLLARLIARSVLIDSGPAGEDEGRGDE
Ga0190267_106289871	3300019767	Soil	LRALRVAPDTVQLVLPDLTPAAPAQRWWLLPETTRREGVTLLARLIARGVLIEPDPAADPGRTGDE
Ga0210395_112478962	3300020582	Soil	MRVAADTVQLVLPELGGAGAADRWWSLPAAVRGEVVTLLARLIARGVLIDAGPGEHGGRG
Ga0222621_10132542	3300021510	Groundwater Sediment	APDTVQLTLPELAPAPPGERWWSLPDTTRREVVTLLARLIARSVVIDPDSGPDEEVGR
Ga0222623_101188271	3300022694	Groundwater Sediment	RALRVAPDTVQLTLPELAPAPPGERWWSLPDTTRREVVTLLARLIARSVVIDPDSGPDEEVGR
Ga0207642_106598942	3300025899	Miscanthus Rhizosphere	LRALRVAVDPVQLTLPQVGAVRPAERWWLLPESTRGEVLALLARLIARGVLVDPDCASPWDRCGDE
Ga0207663_108096302	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	LRALRVAVDPVQLTLPQVGAVRPAERWWSLPESTRGEVLALLARLIARGVLIDPDSASPRDRCGDE
Ga0207657_112842242	3300025919	Corn Rhizosphere	LRALRVAADTVQLPLPDLASARPAERWWLLPDSVRGEVLMLLARLIARGVLIDDSEARRCGDE
Ga0207687_110893472	3300025927	Miscanthus Rhizosphere	LRALRVAADTVQLPLPDVASARPAERWWLLPDSVRGEVLMLLARLIARGVLIDDSEAGRCGDE
Ga0207687_116325822	3300025927	Miscanthus Rhizosphere	LRALRVAPDTVQLVLPDLTPALPTQRWWLLPETTRREVVTLLARLIARGVLIDLDAAEPDPSVVGRASDD
Ga0207665_109209882	3300025939	Corn, Switchgrass And Miscanthus Rhizosphere	LRVAVDPVQLTLPQVGAVRPAERWWLLPESTRGEVLALLARLIARGVLVDPDCASPWDRCGDE
Ga0207428_100608883	3300027907	Populus Rhizosphere	LRALRVAADIVQLTLPDLEPACPADRWWSLPESTRSEVVTLLARLIARGVLIDCDAAGDGSGDGDE
Ga0302169_100141782	3300028679	Fen	LRVAVDTVQLPLPELVPAGPVERWWSLPESTRTEVLTLLARLIARGVLIDPDAAAVIGVGDE
Ga0307321_10877202	3300028704	Soil	LRVAADTVQLPLPDVASARPVERWWLLPDSVRGEVLTLLARLIARGVLIDSEAGRCGDE
Ga0307291_11788202	3300028707	Soil	TVQLPLPDVASARPVERWWLLPDSVRGEVLTLLARLIARGVLIDSEAGRCGDE
Ga0302264_10645541	3300028732	Fen	TVQLPLPELVPAGPVERWWSLPESTRTEVLTLLARLIARGVLIDPDAAAVIGVGDE
Ga0302261_10888302	3300028733	Fen	LRALRVAVETVQLPLPELVPAGPVERWWSLPESTRTEVLTLLARLIARGVLIDPDAAAVIGVGDE
Ga0302205_101668851	3300028739	Fen	LRALRVAVDTVQLPLPELVPAGPVERWWSLPESTRTEVLTLLARLIARGVLIDPDAAAVIGVGDE
Ga0307284_103872282	3300028799	Soil	LRVAADTVQLPLPDVASARPVERWWLLPDSVRGEVLTLLARLIARGVLIDSEAGRRGDE
Ga0307312_100541461	3300028828	Soil	PDTVQLTLPELAPAPPGERWWSLPDTTRREVVTLLARLIARSVVIDPDSGPDEEVGR
Ga0307278_104881632	3300028878	Soil	LRALRVAAETVQLALPDLDPARPVDRWWSLPESSRCEVLTLLARLIARGVLIDPDAAGGWGDVDE
Ga0311348_100792541	3300030019	Fen	LRVAVETVQLPLPELVPAGPVERWWSLPESTRTEVLTLLARLIARGVLIDPDAAAVIGVGDE
Ga0302286_103055943	3300030047	Fen	LRALRVAVDTVQLPLPELVPAGPVERWWSLPESTRTEVLTLLARLIARGVLIDPDAAAVI
Ga0302217_101843962	3300030052	Fen	VDTVQLPLPELVPAGPVERWWSLPESTRTEVLTLLARLIARGVLIDPDAAAVIGVGDE
Ga0247826_110560962	3300030336	Soil	LRALRVARDTIQLTLPDFAPPAPVQRWWLLPEATRSEVVTLLARLIARSVLIDSGPAGEDESRGDE
Ga0311360_102781981	3300030339	Bog	AVDTVQLPLPELVPAGPVERWWSLPESTRTEVLTLLARLIARGVLIDPDAAAVIGVGDE
Ga0307408_1014885623	3300031548	Rhizosphere	LRALRVAPNTIQLVLPDLAPAAPAERWWSLPEATRSELLTLLARLIARGVLISPDSTPEEEGSGD
Ga0307469_118114962	3300031720	Hardwood Forest Soil	LRVAVDPVQLTLPQVGGVRPAERWWLLPESTRGEVLALLARLIARGVLVDPDCASPWDRCGDE
Ga0306923_103494402	3300031910	Soil	LRALRVAVDPVQLTLPQVGAARPAERWWSLPESTRGEVLALLARLIARGVLIDPDCASARDRCGDE
Ga0306921_125106651	3300031912	Soil	TYLRALRVAVDPVQLTLPQVGAARPAERWWSLPESTRGEVLALLARLIARGVLIDPDCASARDRCGDE
Ga0306922_114889362	3300032001	Soil	LRALRVAVDPVQLTLPQVGAARPAERWWSLPESTRGEVLALLARLIARGVLIDPDCASARDR
Ga0307415_1011862851	3300032126	Rhizosphere	LRALRVAPNTIQLVLPDLAPAAPAERWWSLPEATRSELLTLLARLIARGVLISPDSAPEEEGSGDE
Ga0307472_1000314323	3300032205	Hardwood Forest Soil	VQLPLPDLASARPAERWWLLPDSVRGEVLMLLARLIARGVLIDDSEAGRCGDE
Ga0306920_1002107043	3300032261	Soil	LRVAVDPVQLTLPQVGAARPAERWWSLPESTRGEVLALLARLIARGVLIDPDCASARDRCGDE
Ga0364925_0101684_686_883	3300034147	Sediment	LRALRVAPDTVQLALPDLGPAGPAERWWSLPEATRSEVLTLLARLIARGVLIDPNSATEERSGNE

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F101109

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences