Metagenome / Metatranscriptome Family F101107

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F101107
Family Type	Metagenome / Metatranscriptome
Number of Sequences	102
Average Sequence Length	44 residues
Representative Sequence	MPVGLVIIIAVVMALAVPRIRLRLPVPDASRRARSLAWRLRMRQR
Number of Associated Samples	84
Number of Associated Scaffolds	102

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	49.02 %
% of genes near scaffold ends (potentially truncated)	50.00 %
% of genes from short scaffolds (< 2000 bps)	83.33 %
Associated GOLD sequencing projects	76
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.37

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (60.784 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (21.569 % of family members)
Environment Ontology (ENVO)	Unclassified (31.373 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (50.000 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 53.42% β-sheet: 0.00% Coil/Unstructured: 46.58%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.37
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.37
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 102 Family Scaffolds
PF12802	MarR_2	12.75
PF01590	GAF	8.82
PF13549	ATP-grasp_5	2.94
PF13466	STAS_2	2.94
PF00487	FA_desaturase	1.96
PF00291	PALP	1.96
PF13374	TPR_10	0.98
PF01548	DEDD_Tnp_IS110	0.98
PF03279	Lip_A_acyltrans	0.98
PF00011	HSP20	0.98
PF01047	MarR	0.98
PF02954	HTH_8	0.98
PF13439	Glyco_transf_4	0.98
PF01458	SUFBD	0.98

COG ID	Name	Functional Category	% Frequency in 102 Family Scaffolds
COG1398	Fatty-acid desaturase	Lipid transport and metabolism [I]	1.96
COG3239	Fatty acid desaturase	Lipid transport and metabolism [I]	1.96
COG0071	Small heat shock protein IbpA, HSP20 family	Posttranslational modification, protein turnover, chaperones [O]	0.98
COG0719	Fe-S cluster assembly scaffold protein SufB	Posttranslational modification, protein turnover, chaperones [O]	0.98
COG1560	Palmitoleoyl-ACP: Kdo2-lipid-IV acyltransferase (lipid A biosynthesis)	Lipid transport and metabolism [I]	0.98
COG3547	Transposase	Mobilome: prophages, transposons [X]	0.98
COG4261	Predicted acyltransferase, LPLAT superfamily	General function prediction only [R]	0.98

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	60.78 %
Unclassified	root	N/A	39.22 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	60.78 %
Unclassified	root	N/A	39.22 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	60.78 %
Unclassified	root	N/A	39.22 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	56.86 %
Unclassified	root	N/A	39.22 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	56.86 %
Unclassified	root	N/A	39.22 %

Name	Rank	Taxonomy	Distribution
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	40.20 %
Unclassified	root	N/A	39.22 %
unclassified Actinobacteria	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	39.22 %
Propionibacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales	13.73 %
Streptosporangiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	10.78 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1.96 %
Actinobacteria bacterium 13_2_20CM_2_71_6	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium 13_2_20CM_2_71_6	0.98 %
Geodermatophilales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales	0.98 %
Streptomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	39.22 %
unclassified Propionibacteriales	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → unclassified Propionibacteriales	13.73 %
Treboniaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae	9.80 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1.96 %
Streptomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	0.98 %
Geodermatophilaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae	0.98 %
Nocardiopsaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Nocardiopsaceae	0.98 %
Actinobacteria bacterium 13_2_20CM_2_71_6	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium 13_2_20CM_2_71_6	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	39.22 %
Propionibacteriales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → unclassified Propionibacteriales → Propionibacteriales bacterium	13.73 %
Trebonia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia	9.80 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1.96 %
Geodermatophilus	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae → Geodermatophilus	0.98 %
Allosalinactinospora	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Nocardiopsaceae → Allosalinactinospora	0.98 %
Streptacidiphilus	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptacidiphilus	0.98 %
Actinobacteria bacterium 13_2_20CM_2_71_6	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium 13_2_20CM_2_71_6	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	39.22 %
Propionibacteriales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → unclassified Propionibacteriales → Propionibacteriales bacterium	13.73 %
Trebonia kvetii	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	9.80 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1.96 %
Allosalinactinospora lopnorensis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Nocardiopsaceae → Allosalinactinospora → Allosalinactinospora lopnorensis	0.98 %
Streptacidiphilus albus	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptacidiphilus → Streptacidiphilus albus	0.98 %
Geodermatophilus	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae → Geodermatophilus	0.98 %
Actinobacteria bacterium 13_2_20CM_2_71_6	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium 13_2_20CM_2_71_6	0.98 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300002245\|JGIcombinedJ26739_101802502	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	513	Open in IMG/M
3300004080\|Ga0062385_10343083	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	873	Open in IMG/M
3300004082\|Ga0062384_100384163	Not Available	900	Open in IMG/M
3300004092\|Ga0062389_103695709	Not Available	574	Open in IMG/M
3300005169\|Ga0066810_10089041	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	667	Open in IMG/M
3300005434\|Ga0070709_10011976	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	4847	Open in IMG/M
3300005435\|Ga0070714_100164660	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2009	Open in IMG/M
3300005445\|Ga0070708_100070195	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3151	Open in IMG/M
3300005445\|Ga0070708_100842588	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	861	Open in IMG/M
3300005467\|Ga0070706_100628294	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	997	Open in IMG/M
3300005468\|Ga0070707_101522303	Not Available	636	Open in IMG/M
3300006034\|Ga0066656_10768175	Not Available	618	Open in IMG/M
3300006577\|Ga0074050_11889906	Not Available	564	Open in IMG/M
3300006797\|Ga0066659_11142318	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	651	Open in IMG/M
3300006953\|Ga0074063_14145986	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	642	Open in IMG/M
3300009038\|Ga0099829_10122587	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2048	Open in IMG/M
3300009038\|Ga0099829_11725816	Not Available	514	Open in IMG/M
3300009088\|Ga0099830_11566376	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	549	Open in IMG/M
3300009089\|Ga0099828_10457005	All Organisms → cellular organisms → Bacteria	1152	Open in IMG/M
3300009090\|Ga0099827_10081766	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2524	Open in IMG/M
3300009090\|Ga0099827_10399413	Not Available	1175	Open in IMG/M
3300009520\|Ga0116214_1346271	Not Available	575	Open in IMG/M
3300009683\|Ga0116224_10285048	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → unclassified Propionibacteriales → Propionibacteriales bacterium	787	Open in IMG/M
3300009762\|Ga0116130_1293424	Not Available	519	Open in IMG/M
3300009824\|Ga0116219_10479313	Not Available	689	Open in IMG/M
3300010154\|Ga0127503_10372843	Not Available	646	Open in IMG/M
3300010333\|Ga0134080_10547814	Not Available	556	Open in IMG/M
3300010379\|Ga0136449_100382877	Not Available	2508	Open in IMG/M
3300010379\|Ga0136449_102013945	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → unclassified Propionibacteriales → Propionibacteriales bacterium	852	Open in IMG/M
3300010379\|Ga0136449_103673841	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	580	Open in IMG/M
3300010862\|Ga0126348_1211102	Not Available	541	Open in IMG/M
3300011120\|Ga0150983_10132618	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → unclassified Propionibacteriales → Propionibacteriales bacterium	794	Open in IMG/M
3300011120\|Ga0150983_10682083	Not Available	1234	Open in IMG/M
3300011120\|Ga0150983_15647689	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptacidiphilus → Streptacidiphilus albus	694	Open in IMG/M
3300011270\|Ga0137391_10216574	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium 13_2_20CM_2_71_6	1664	Open in IMG/M
3300011271\|Ga0137393_10548827	Not Available	991	Open in IMG/M
3300012096\|Ga0137389_10208397	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1630	Open in IMG/M
3300012198\|Ga0137364_11132997	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	588	Open in IMG/M
3300012201\|Ga0137365_10084964	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2383	Open in IMG/M
3300012202\|Ga0137363_10814199	Not Available	792	Open in IMG/M
3300012206\|Ga0137380_10108193	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae → Geodermatophilus	2540	Open in IMG/M
3300012206\|Ga0137380_10205509	All Organisms → cellular organisms → Bacteria	1785	Open in IMG/M
3300012206\|Ga0137380_11054270	Not Available	694	Open in IMG/M
3300012207\|Ga0137381_10458094	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1113	Open in IMG/M
3300012209\|Ga0137379_10109344	All Organisms → cellular organisms → Bacteria	2660	Open in IMG/M
3300012350\|Ga0137372_10142983	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1961	Open in IMG/M
3300012917\|Ga0137395_10744822	Not Available	709	Open in IMG/M
3300012927\|Ga0137416_11724060	Not Available	572	Open in IMG/M
3300013770\|Ga0120123_1055916	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	853	Open in IMG/M
3300014491\|Ga0182014_10393199	Not Available	693	Open in IMG/M
3300015374\|Ga0132255_102347739	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → unclassified Propionibacteriales → Propionibacteriales bacterium	814	Open in IMG/M
3300016341\|Ga0182035_10511398	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1027	Open in IMG/M
3300017926\|Ga0187807_1186411	Not Available	670	Open in IMG/M
3300018037\|Ga0187883_10627291	Not Available	559	Open in IMG/M
3300019879\|Ga0193723_1127595	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	701	Open in IMG/M
3300019879\|Ga0193723_1176569	Not Available	552	Open in IMG/M
3300019888\|Ga0193751_1015841	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3833	Open in IMG/M
3300019888\|Ga0193751_1023498	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2997	Open in IMG/M
3300020078\|Ga0206352_10216523	Not Available	546	Open in IMG/M
3300020580\|Ga0210403_10558565	Not Available	927	Open in IMG/M
3300020581\|Ga0210399_10109080	Not Available	2269	Open in IMG/M
3300021402\|Ga0210385_10920562	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → unclassified Propionibacteriales → Propionibacteriales bacterium	671	Open in IMG/M
3300021405\|Ga0210387_11008134	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → unclassified Propionibacteriales → Propionibacteriales bacterium	729	Open in IMG/M
3300021407\|Ga0210383_11605876	Not Available	535	Open in IMG/M
3300021432\|Ga0210384_11789936	Not Available	520	Open in IMG/M
3300022512\|Ga0242676_1054028	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	507	Open in IMG/M
3300022532\|Ga0242655_10248318	Not Available	562	Open in IMG/M
3300023551\|Ga0247546_103306	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	626	Open in IMG/M
3300025434\|Ga0208690_1057816	Not Available	605	Open in IMG/M
3300025910\|Ga0207684_10033328	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	4380	Open in IMG/M
3300025916\|Ga0207663_10646499	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → unclassified Propionibacteriales → Propionibacteriales bacterium	834	Open in IMG/M
3300025922\|Ga0207646_10026088	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	5339	Open in IMG/M
3300025922\|Ga0207646_10043148	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	4051	Open in IMG/M
3300025922\|Ga0207646_10551568	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → unclassified Propionibacteriales → Propionibacteriales bacterium	1036	Open in IMG/M
3300025922\|Ga0207646_11045467	Not Available	720	Open in IMG/M
3300025928\|Ga0207700_10995655	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → unclassified Propionibacteriales → Propionibacteriales bacterium	750	Open in IMG/M
3300027297\|Ga0208241_1044741	Not Available	697	Open in IMG/M
3300027568\|Ga0208042_1018776	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	1786	Open in IMG/M
3300027655\|Ga0209388_1160256	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	634	Open in IMG/M
3300027698\|Ga0209446_1198634	All Organisms → cellular organisms → Bacteria	516	Open in IMG/M
3300027750\|Ga0209461_10139877	Not Available	581	Open in IMG/M
3300027825\|Ga0209039_10083923	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1387	Open in IMG/M
3300027829\|Ga0209773_10093886	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	1235	Open in IMG/M
3300027846\|Ga0209180_10629424	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	590	Open in IMG/M
3300027889\|Ga0209380_10245227	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → unclassified Propionibacteriales → Propionibacteriales bacterium	1052	Open in IMG/M
3300028047\|Ga0209526_10597003	Not Available	708	Open in IMG/M
3300028801\|Ga0302226_10327650	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → unclassified Propionibacteriales → Propionibacteriales bacterium	644	Open in IMG/M
3300028807\|Ga0307305_10084202	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	1470	Open in IMG/M
3300028828\|Ga0307312_10741247	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → unclassified Propionibacteriales → Propionibacteriales bacterium	651	Open in IMG/M
3300030499\|Ga0268259_10167104	Not Available	531	Open in IMG/M
3300030707\|Ga0310038_10353393	Not Available	649	Open in IMG/M
3300031226\|Ga0307497_10033456	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Nocardiopsaceae → Allosalinactinospora → Allosalinactinospora lopnorensis	1695	Open in IMG/M
3300031708\|Ga0310686_103056943	Not Available	565	Open in IMG/M
3300031720\|Ga0307469_11713449	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	606	Open in IMG/M
3300031723\|Ga0318493_10794518	Not Available	533	Open in IMG/M
3300032160\|Ga0311301_10409531	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	2070	Open in IMG/M
3300032160\|Ga0311301_10419578	Not Available	2036	Open in IMG/M
3300032160\|Ga0311301_10497032	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	1810	Open in IMG/M
3300032160\|Ga0311301_10543139	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	1702	Open in IMG/M
3300032160\|Ga0311301_11353873	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → unclassified Propionibacteriales → Propionibacteriales bacterium	893	Open in IMG/M
3300032261\|Ga0306920_101570353	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → unclassified Propionibacteriales → Propionibacteriales bacterium	937	Open in IMG/M
3300034819\|Ga0373958_0118942	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	637	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	96.08%
Host-Associated	Host-Associated	3.92%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	85.29%
Aquatic	Environmental → Aquatic	10.78%
Plants	Host-Associated → Plants	3.92%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	84.31%
Freshwater	Environmental → Aquatic → Freshwater	10.78%
Phyllosphere	Host-Associated → Plants → Phyllosphere	1.96%
Peat	Environmental → Terrestrial → Peat	0.98%
Rhizoplane	Host-Associated → Plants → Rhizoplane	0.98%
Rhizosphere	Host-Associated → Plants → Rhizosphere	0.98%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	63.73%
Loam	Environmental → Terrestrial → Soil → Loam	19.61%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	9.80%
Phylloplane/Leaf Surface	Host-Associated → Plants → Phyllosphere → Phylloplane/Leaf Surface	1.96%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.98%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.98%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	0.98%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.98%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.98%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	49.02%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	12.75%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	11.76%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	6.86%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	6.86%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	1.96%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	1.96%
Unclassified	Host-Associated → Plants → Phyllosphere → Phylloplane/Leaf Surface → Unclassified	1.96%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	0.98%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	0.98%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	0.98%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	0.98%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	0.98%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.98%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.98%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	21.57%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	12.75%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	11.76%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	8.82%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	8.82%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	5.88%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	5.88%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.94%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	1.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.96%
Agave	Host-Associated → Plants → Phyllosphere → Phylloplane/Leaf Surface → Unclassified → Agave	1.96%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	0.98%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	0.98%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	0.98%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	0.98%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.98%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost	0.98%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.98%
Bog	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog	0.98%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	0.98%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.98%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	0.98%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.98%
Rhizosphere Soil	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere Soil	0.98%
Boreal Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil	0.98%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300004080	Coassembly of ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300004082	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3	Environmental	Open in IMG/M
3300004092	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300005169	Soil and rhizosphere microbial communities from Laval, Canada - mgHPA	Environmental	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300006034	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_105	Environmental	Open in IMG/M
3300006577	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHPA (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006797	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108	Environmental	Open in IMG/M
3300006953	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHMB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009088	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG	Environmental	Open in IMG/M
3300009089	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG	Environmental	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300009520	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_1_NS metaG	Environmental	Open in IMG/M
3300009683	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_b_LC metaG	Environmental	Open in IMG/M
3300009762	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_17_40	Environmental	Open in IMG/M
3300009824	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_6_BS metaG	Environmental	Open in IMG/M
3300010154	Soil microbial communities from Willow Creek, Wisconsin, USA - WC-WI-TBF metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010333	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_40cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300010862	Boreal forest soil eukaryotic communities from Alaska, USA - C4-4 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300011270	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG	Environmental	Open in IMG/M
3300011271	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaG	Environmental	Open in IMG/M
3300012096	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG	Environmental	Open in IMG/M
3300012198	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaG	Environmental	Open in IMG/M
3300012201	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012206	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaG	Environmental	Open in IMG/M
3300012207	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaG	Environmental	Open in IMG/M
3300012209	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaG	Environmental	Open in IMG/M
3300012350	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_60_16 metaG	Environmental	Open in IMG/M
3300012917	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaG	Environmental	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300013770	Permafrost microbial communities from Nunavut, Canada - A15_5cm_18M	Environmental	Open in IMG/M
3300014491	Permafrost microbial communities from Stordalen Mire, Sweden - 612S2D metaG	Environmental	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300017926	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_2	Environmental	Open in IMG/M
3300018037	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_20_10	Environmental	Open in IMG/M
3300019879	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2m2	Environmental	Open in IMG/M
3300019888	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1c2	Environmental	Open in IMG/M
3300020078	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-5 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300021402	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-O	Environmental	Open in IMG/M
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental	Open in IMG/M
3300021407	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300022512	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022532	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-4-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300023551	Metatranscriptome of soil microbial communities from Bohemian Forest, Czech Republic ? CSA4 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300025434	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_16_10 (SPAdes)	Environmental	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025916	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300027297	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF047 (SPAdes)	Environmental	Open in IMG/M
3300027568	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_7_NC metaG (SPAdes)	Environmental	Open in IMG/M
3300027655	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1 (SPAdes)	Environmental	Open in IMG/M
3300027698	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP04_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027750	Agave microbial communities from Guanajuato, Mexico - As.Ma.rz (SPAdes)	Host-Associated	Open in IMG/M
3300027825	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM1 (SPAdes)	Environmental	Open in IMG/M
3300027829	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM1 (SPAdes)	Environmental	Open in IMG/M
3300027846	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027889	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6 (SPAdes)	Environmental	Open in IMG/M
3300028047	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300028801	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E3_3	Environmental	Open in IMG/M
3300028807	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_186	Environmental	Open in IMG/M
3300028828	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_202	Environmental	Open in IMG/M
3300030499	Agave microbial communities from Guanajuato, Mexico - As.Ma.rz (v2)	Host-Associated	Open in IMG/M
3300030707	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_4_PS metaG (v2)	Environmental	Open in IMG/M
3300031226	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 10_S	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031723	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f23	Environmental	Open in IMG/M
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300034819	Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_1	Host-Associated	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGIcombinedJ26739_1018025021	3300002245	Forest Soil	VGVATAIAVVIVLTVPRIRLRVPVPVASRRTRSLVRRLRMWNR*
Ga0062385_103430832	3300004080	Bog Forest Soil	MVITIAVEMALGVPRVRLRLSVPDAGRRARLLAWRLRMGQR*
Ga0062384_1003841631	3300004082	Bog Forest Soil	VGAHAGGLAIAIAIAVVMALAVPRIRLKLSVPVAYRRARSLAWRLRMRNR*
Ga0062389_1036957091	3300004092	Bog Forest Soil	LAIAIAAVMALAVPRIRLRQPVPVASRLARSLARRLRMRNR*
Ga0066810_100890411	3300005169	Soil	MPIGLIIIVAVVMALAGPRMRLTLSVPDASHRARSLAWRLRMRQR*
Ga0070709_100119766	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	MPAGLVTILAVFMALGMPRTRLRPPVPDASRRARSLAWRLWMRQR*
Ga0070714_1001646604	3300005435	Agricultural Soil	MPAGLAIAIAVVMALAGPRIRLRLPVPVASRRASSLAWRMRDR*
Ga0070708_1000701954	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MPIGLVIIMAVVMALGMPRLRLRLPVPDASRLARSLAWRLRMLQQ*
Ga0070708_1008425883	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MPPGLIIIMAVLMALAAPRSRLGLPVPDAGRRARFLAWRPRMRQP*
Ga0070706_1006282942	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	MPPGLIIIMAVLMALAVPRSRLGLPVPDAGRRARFLAWRPRMRQP*
Ga0070707_1015223031	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	MPVGLIIIAAVLMALGMPRSRLSLPVPDASRRAGSLAWRLRMRQR*
Ga0066656_107681752	3300006034	Soil	MTLAVVMALAVPRIRLRLPVPVARRRARPLGLAAA
Ga0074050_118899062	3300006577	Soil	MPIGLIIIVAVVMALAGPRMRLTLSVPDASRRARSLAWRLRMRQR*
Ga0066659_111423181	3300006797	Soil	MPPGLVIIVAVLMALAVQLIRLRPLVPDASRRARPLAWRLRMRQR*
Ga0074063_141459862	3300006953	Soil	MPAGMVIAIAVEMALGKPRVRLRLSVPDARRRARLLAWRLRMRR*
Ga0099829_101225872	3300009038	Vadose Zone Soil	MPAGLVIIVAVLMALAVPRSRLGLPVPDAGRRARSVAWRLRMRQR*
Ga0099829_117258161	3300009038	Vadose Zone Soil	MPAGMVITIAVEMALAVPRIRLRLSVPDASRRARSLAWRLRMRQEVTR*
Ga0099830_115663762	3300009088	Vadose Zone Soil	MPVGLVTIVAVLMALAVPRSRLGLPVPDAGRRARSVAWRLRMRQR*
Ga0099828_104570053	3300009089	Vadose Zone Soil	MPAGMVITIAVEMALAVPRIRLRLSVPDASRRARSLAWRLRMRR
Ga0099827_100817662	3300009090	Vadose Zone Soil	MPIGLVTIMAVLMALAVPRSRLGLPVPDVSRRARSLAWRLRRRQR*
Ga0099827_103994131	3300009090	Vadose Zone Soil	MPIGLIIIMAVLMALAVPRSRLRPPVPDAGRRARSLAWRLRMRQR*
Ga0116214_13462712	3300009520	Peatlands Soil	AVVMALAVPRIRLRLPVPVASRRARSLAWRLRMWNR*
Ga0116224_102850481	3300009683	Peatlands Soil	AGAHAAGLAIAVAVGTALAVPRIRLRLSVPVASRRARSLAWRLRMRNR*
Ga0116130_12934242	3300009762	Peatland	LPSALAIAIAAVIALAVPRIRLKPVPVASRRARSLARRLRMGNR*
Ga0116219_104793132	3300009824	Peatlands Soil	AADLVIAIAVVMALAVPRIRLRLPVPVASRRARSLAWRLRMWNR*
Ga0127503_103728432	3300010154	Soil	IAIAVVMALAGPRIRLRLLVPVASRRARSLAWRLRERER*
Ga0134080_105478141	3300010333	Grasslands Soil	TGLVIAIAVVMALAGPRIRLRLLVPVASRRARSLAWRLRMRRR*
Ga0136449_1003828772	3300010379	Peatlands Soil	MPTGQMTIMAVLVALILPRIRLRLPVPDASRRARSLAWRLRTRQR*
Ga0136449_1020139453	3300010379	Peatlands Soil	GLAIAIAVVMALAVPHIRLRLSVPVASRRARPLAWRLRMRNR*
Ga0136449_1036738411	3300010379	Peatlands Soil	GATAGAHAAGLAIVIAVVMALAVPRIRLRLPVPVASRRARSLAWRLRMRNR*
Ga0126348_12111022	3300010862	Boreal Forest Soil	MPIGLIIITAVLMALGMPRLRLRPPVPMQAAGPDLFLAWRLRMRQR*
Ga0150983_101326182	3300011120	Forest Soil	GLAIAIAVVMALAVPRIRLRLPVPVASRRARSLAWRLRMRNR*
Ga0150983_106820833	3300011120	Forest Soil	MRTGLGIIVVVVTALTVPRIRLTPSVPGASRRARSLARRLWMRQR*
Ga0150983_156476893	3300011120	Forest Soil	GLPEERMRTGLGIIVVVVTALTVPRIRLTPSVPGASRRARSLARRLRMRQR*
Ga0137391_102165741	3300011270	Vadose Zone Soil	MPIGLVTIMAVLMALAVPRSRLGLPVPDAGRRARSVAWRLRMRQR*
Ga0137393_105488271	3300011271	Vadose Zone Soil	MPIGLIMIMAVFMALGMPRSSRLSLPVPDASRRAGSLAWRLRMRKR*
Ga0137389_102083971	3300012096	Vadose Zone Soil	VPVGLIIIVAVLMALAVPRSRLGLPVPDAGRRARSVAWRLRMRQR*
Ga0137364_111329972	3300012198	Vadose Zone Soil	MPAGLIIIMAVLMALGMPRSRLRPPVPDASRRARSLAWRQR*
Ga0137365_100849644	3300012201	Vadose Zone Soil	MPVGLVTIMAVLMALAVPRTRLRPPVPDASRRARSLAWRLRMRQR*
Ga0137363_108141991	3300012202	Vadose Zone Soil	WPSLMALGMPRSRLSLPVPDASRRAGSLAWRLRMRKR*
Ga0137380_101081934	3300012206	Vadose Zone Soil	MPPGLVIIVAALMALAVQLIRLGPPVPDAGRRARSLAWRPRMRQP*
Ga0137380_102055091	3300012206	Vadose Zone Soil	IMAVLMALAVPRTRLRPPVPDASRRARSLAWRLRMRLR*
Ga0137380_110542701	3300012206	Vadose Zone Soil	MPAGLVIIVAVLMALGMPRIRLRPSVPDAGRRARPLAWRLRMRQR*
Ga0137381_104580942	3300012207	Vadose Zone Soil	MPPGLIIIVAVLVALAVQLIRLGPPVPDAGRRARSLAWRPRMRQP*
Ga0137379_101093445	3300012209	Vadose Zone Soil	MPAGMVIAIAVEMALGKPRGRLRLSVPDASRRARLLAWRLRMGQR*
Ga0137372_101429833	3300012350	Vadose Zone Soil	MPAGLVTIMAVLMALAVPRTRLRPPVPDASRRARSLAWRLRMRLR*
Ga0137395_107448221	3300012917	Vadose Zone Soil	SSWPSLMALGMPRSRLSLPVPDASRRAGSLAWRLRMRKR*
Ga0137416_117240602	3300012927	Vadose Zone Soil	MPVGLIIIWPSLMALGMPRSRLSLPVPDASRRAGSLAWRLRMRKR*
Ga0120123_10559161	3300013770	Permafrost	MLIGLIIIMAVEMALGMPHIRLSLPVPDASRRARSLAWRLRMRQR*
Ga0182014_103931991	3300014491	Bog	MPVGLVIIIAVVMALAVPRIRLRLPVPDASRRARSLAWRLRMRQR*
Ga0132255_1023477391	3300015374	Arabidopsis Rhizosphere	HAVGLVIAIAVVMALAVPRIRLRLSVPVASRRARSLAWRLRMRNR*
Ga0182035_105113981	3300016341	Soil	IAVVVALAVPRIRLRLPVPVASRRARSLAWRLRMRNR
Ga0187807_11864111	3300017926	Freshwater Sediment	AGLVIVIAMVMALAVPRIRLRPPVPVASRRAWSLAWRLRMRNR
Ga0187883_106272911	3300018037	Peatland	MPVGLVIIIAVVMALAVPRIRLRLPVPDASRRARSLAWRLRMRQR
Ga0193723_11275952	3300019879	Soil	MLPGLVIIVAVLMALGMPRTRLRPSVPDASRRARPLAWRLRMRQR
Ga0193723_11765693	3300019879	Soil	VGLATAIAVVMALAVPRIRLRLSVPVASRRARSLARRLRIRNR
Ga0193751_10158412	3300019888	Soil	MPAGMVITIAAGRALAMPHIRLRPPVPDASRRARSLAWRLRMRQR
Ga0193751_10234983	3300019888	Soil	MPPGLVIIVAVLMALGMPRTRLRPSVPDASRRARPLAWRLRMRQR
Ga0206352_102165232	3300020078	Corn, Switchgrass And Miscanthus Rhizosphere	MALAVPRIRLRLSVPVASRRARSLAWRLRMRTGDTMK
Ga0210403_105585652	3300020580	Soil	PAGLVTILAVFMALGMPRTRLRPPVPDASRRARSLAWRLWMRQR
Ga0210399_101090802	3300020581	Soil	MRTGLGIIVVVVTALTVPRIRLTPSVPGASRRARSLARRLRMRQR
Ga0210385_109205621	3300021402	Soil	AIAIAAVMALAVPRIRLRLPVPVASRRARSLAWRLRMRNR
Ga0210387_110081342	3300021405	Soil	GAHAAGLAIAIAVVTALAVPRIRLRLPVPVASRRARSLAWRLRMRNW
Ga0210383_116058762	3300021407	Soil	IFVVVVTALTVPRIRLTPSVPGASRRARSLARRLRMRQR
Ga0210384_117899363	3300021432	Soil	IAVVMALAVPRIRLRLPVPVASRRARSLAWRLRMRNR
Ga0242676_10540282	3300022512	Soil	MRTGLGIIVVVVTALTVPRIRLTPSVPGASRRARSLAWRLRMRRQ
Ga0242655_102483181	3300022532	Soil	GLPEEPMPAGMVIAIAVEMALGKPRVRLRLPVPDARRRARSLAWRRRMRPR
Ga0247546_1033063	3300023551	Soil	GLAIAIAVVMVLVVPRIRMRLPVPVASRRARSLAWRLRMRKPVTR
Ga0208690_10578161	3300025434	Peatland	LPSALAIAIAAVIALAVPRIRLKPVPVASRRARSLARRLRMGNR
Ga0207684_100333286	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MPIGLVIIMAVVMALGRPRLRLRLPVPDASRRARFLAWRLRMRQR
Ga0207663_106464992	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	TAGAHAAGLAIAIAVVMALAVPRIRLRLPVPVASRRARSLAWRLRMRNR
Ga0207646_100260882	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	MPIGLVIIMAVVMALGMPRLRLRLPVPDASRLARSLAWRLRMLQQ
Ga0207646_100431481	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	LVIAIAVVMALAVPRIRLRLSVPVASRRARSLAWRLRMRNW
Ga0207646_105515683	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	MPAGLAIAIAVVMALAGPRIRLRLPVPVASRRASSLAWRMRDR
Ga0207646_110454672	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	MPVGLIIIAAVLMALGMPRSRLSLPVPDASRRAGSLAWRLRMRQR
Ga0207700_109956552	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	AGLAIAIAVVMALAGPRIRLRLPVPVASRRARSLAWRLRMRNR
Ga0208241_10447412	3300027297	Forest Soil	MAIAAVMALAVPRVRVRLSVPVASRRARSLAWRLR
Ga0208042_10187762	3300027568	Peatlands Soil	PGATAGAHAAGLAIVIAVVMALAVPRIRLRLPVPVASRQARSLAWRLRMWNR
Ga0209388_11602562	3300027655	Vadose Zone Soil	MPPGLVIIVAVLMALAVQLIRLRPLVPDASRRARPLAWRLRMRQR
Ga0209446_11986341	3300027698	Bog Forest Soil	MVITIAVEMALGVPRVRLRLSVPDAGRRARLLAWRLRMGQR
Ga0209461_101398771	3300027750	Agave	NAIAVVMALAVSRIRLRLSVPVASRRARSPAWRLRMWKR
Ga0209039_100839231	3300027825	Bog Forest Soil	MAVLMARALPRSRLRPSVPDASRRARSLAWRLRMRRR
Ga0209773_100938862	3300027829	Bog Forest Soil	VGAHAGGLAIAIAIAVVMALAVPRIRLKLSVPVAYRRARSLAWRLRMRNR
Ga0209180_106294242	3300027846	Vadose Zone Soil	MPAGLVIIVAVLMALAVPRSRLGLPVPDAGRRARSVAWRLRMRQR
Ga0209380_102452273	3300027889	Soil	TAGAPAAGLVIAIAVVMALAVPRIRLRLPVPVASRRARSLAWRLRMRNR
Ga0209526_105970031	3300028047	Forest Soil	VHTAGLVIAIAAVMALAVPRIRLRLPVPVASRRARSLAWRLR
Ga0302226_103276501	3300028801	Palsa	RPPGLAIAIAVLMALAVPRIRLRLPVPVASRLARSLARRLRMRNR
Ga0307305_100842022	3300028807	Soil	AASYPGLPEERMPPGLVIIVAVLMALGMPRTRLRPSVPDASRRARPLAWRLRMRQR
Ga0307312_107412472	3300028828	Soil	GLAIAIAVVMALALPRIRLRLSVPVASRRTRSLAWRLRMWER
Ga0268259_101671041	3300030499	Agave	AVVMALAVSRIRLRLSVPVASRRARSPAWRLRMWKR
Ga0310038_103533931	3300030707	Peatlands Soil	GATAGAHAAGLAIAIAVVMALAVPRIRLRLPVPVASRRARSLTWRLRMRNR
Ga0307497_100334561	3300031226	Soil	TPTGLVIAIAVVMALAVPRIRLRLSVPVASRRARSLAWRLRMWDR
Ga0310686_1030569431	3300031708	Soil	AIAIAVVMALAVPRIRLRLSVPVASRRARSLAWRLRMRNR
Ga0307469_117134491	3300031720	Hardwood Forest Soil	MALAVPRIRLRLSVPVASRRARSLAWRLRMRTGDTMKD
Ga0318493_107945183	3300031723	Soil	PEERTPTGLVIAVVVALAVPRIRLRLPVPVASRRARSLAWRLRMRNR
Ga0311301_104095312	3300032160	Peatlands Soil	GLAIVIAVVMALAVPRIRLRLPVPVASRQARSLAWRLRMWNR
Ga0311301_104195783	3300032160	Peatlands Soil	MPTGQMTIMAVLVALILPRIRLRLPVPDASRRARSLAWRLRTRQR
Ga0311301_104970323	3300032160	Peatlands Soil	RTPAGLAIAIAVVMALAVPRIRLRLPVPVASRRARSLAWRLRMRNR
Ga0311301_105431391	3300032160	Peatlands Soil	AVVMALAVPRIRLRLPVPVAIRRARSLAWRLRMRNR
Ga0311301_113538731	3300032160	Peatlands Soil	GLAIAIAVVMALAVPRIRLRLPVPVASRRARSLAWRLRMWNR
Ga0306920_1015703532	3300032261	Soil	ERTPTGLVIAIAGVMALVVSRIRLRLSVPVVSRRARSLAWRLRMRDR
Ga0373958_0118942_1_117	3300034819	Rhizosphere Soil	AIAVVMALAVPRIRLRLPVPVASRRARSLAWRLRMRNR

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F101107

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences