Metagenome / Metatranscriptome Family F101103

Basic Information
Family ID	F101103
Family Type	Metagenome / Metatranscriptome
Number of Sequences	102
Average Sequence Length	88 residues
Representative Sequence	MRRKSLRWVPLAALAVVTAVFVSGALGASGKTGDLSGKNVGVIICTNQNPFCAAWANSVKSGLEKQGASVTVLSSVFDPAVDAQNMNRLIADKP
Number of Associated Samples	91
Number of Associated Scaffolds	102

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	100.00 %
% of genes near scaffold ends (potentially truncated)	98.04 %
% of genes from short scaffolds (< 2000 bps)	94.12 %
Associated GOLD sequencing projects	84
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.35

Most Common Taxonomy
Group	Bacteria (65.686 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (8.823 % of family members)
Environment Ontology (ENVO)	Unclassified (42.157 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (57.843 % of family members)

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 40.16% β-sheet: 9.84% Coil/Unstructured: 50.00%
Feature Viewer

Powered by Feature Viewer

Pfam ID	Name	% Frequency in 102 Family Scaffolds
PF13377	Peripla_BP_3	61.76
PF02538	Hydantoinase_B	0.98
PF05378	Hydant_A_N	0.98

COG ID	Name	Functional Category	% Frequency in 102 Family Scaffolds
COG0145	N-methylhydantoinase A/oxoprolinase/acetone carboxylase, beta subunit	Amino acid transport and metabolism [E]	1.96
COG0146	N-methylhydantoinase B/oxoprolinase/acetone carboxylase, alpha subunit	Amino acid transport and metabolism [E]	1.96

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	65.69 %
Unclassified	root	N/A	34.31 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	65.69 %
Unclassified	root	N/A	34.31 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	65.69 %
Unclassified	root	N/A	34.31 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	34.31 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	20.59 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	8.82 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	34.31 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	18.63 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	6.86 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	34.31 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	6.86 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1.96 %
Negativicutes	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Negativicutes	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	34.31 %
Alcaligenaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Alcaligenaceae	6.86 %
Geodermatophilales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales	1.96 %
Veillonellales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Negativicutes → Veillonellales	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	34.31 %
Pusillimonas (ex Stolz et al. 2005)	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Alcaligenaceae → Pusillimonas (ex Stolz et al. 2005)	6.86 %
Geodermatophilaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae	1.96 %
Veillonellaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Negativicutes → Veillonellales → Veillonellaceae	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	34.31 %
Pusillimonas noertemannii	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Alcaligenaceae → Pusillimonas (ex Stolz et al. 2005) → Pusillimonas noertemannii	6.86 %
Geodermatophilaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae	1.96 %
Dialister	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Negativicutes → Veillonellales → Veillonellaceae → Dialister	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	34.31 %
Pusillimonas noertemannii	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Alcaligenaceae → Pusillimonas (ex Stolz et al. 2005) → Pusillimonas noertemannii	6.86 %
Geodermatophilaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae	1.96 %
Dialister succinatiphilus	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Negativicutes → Veillonellales → Veillonellaceae → Dialister → Dialister succinatiphilus	0.98 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000890\|JGI11643J12802_10082825	All Organisms → cellular organisms → Bacteria	1352	Open in IMG/M
3300000891\|JGI10214J12806_10289341	All Organisms → cellular organisms → Bacteria	1661	Open in IMG/M
3300002568\|C688J35102_118608523	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Negativicutes → Veillonellales → Veillonellaceae → Dialister → Dialister succinatiphilus	577	Open in IMG/M
3300004479\|Ga0062595_102257443	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Alcaligenaceae → Pusillimonas (ex Stolz et al. 2005) → Pusillimonas noertemannii	535	Open in IMG/M
3300005336\|Ga0070680_100358173	All Organisms → cellular organisms → Bacteria	1241	Open in IMG/M
3300005339\|Ga0070660_100683652	All Organisms → cellular organisms → Bacteria	860	Open in IMG/M
3300005341\|Ga0070691_10986111	Not Available	525	Open in IMG/M
3300005355\|Ga0070671_101796890	Not Available	545	Open in IMG/M
3300005437\|Ga0070710_10541495	All Organisms → cellular organisms → Bacteria	803	Open in IMG/M
3300005441\|Ga0070700_101319891	Not Available	607	Open in IMG/M
3300005441\|Ga0070700_101908798	Not Available	514	Open in IMG/M
3300005455\|Ga0070663_100879024	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	773	Open in IMG/M
3300005535\|Ga0070684_100436993	All Organisms → cellular organisms → Bacteria	1209	Open in IMG/M
3300005548\|Ga0070665_100211362	All Organisms → cellular organisms → Bacteria → Proteobacteria	1941	Open in IMG/M
3300005549\|Ga0070704_102240142	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Alcaligenaceae → Pusillimonas (ex Stolz et al. 2005) → Pusillimonas noertemannii	508	Open in IMG/M
3300005614\|Ga0068856_101828550	All Organisms → cellular organisms → Bacteria	619	Open in IMG/M
3300005615\|Ga0070702_100737069	All Organisms → cellular organisms → Bacteria	755	Open in IMG/M
3300005615\|Ga0070702_101388156	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Alcaligenaceae → Pusillimonas (ex Stolz et al. 2005) → Pusillimonas noertemannii	574	Open in IMG/M
3300005616\|Ga0068852_101898283	All Organisms → cellular organisms → Bacteria	618	Open in IMG/M
3300005617\|Ga0068859_102361195	All Organisms → cellular organisms → Bacteria	586	Open in IMG/M
3300005718\|Ga0068866_10511111	All Organisms → cellular organisms → Bacteria	797	Open in IMG/M
3300005842\|Ga0068858_100671211	All Organisms → cellular organisms → Bacteria	1008	Open in IMG/M
3300006042\|Ga0075368_10345544	All Organisms → cellular organisms → Bacteria	647	Open in IMG/M
3300006047\|Ga0075024_100858929	Not Available	513	Open in IMG/M
3300006057\|Ga0075026_100957301	Not Available	530	Open in IMG/M
3300006059\|Ga0075017_100343114	All Organisms → cellular organisms → Bacteria	1111	Open in IMG/M
3300006581\|Ga0074048_12631338	All Organisms → cellular organisms → Bacteria	930	Open in IMG/M
3300006953\|Ga0074063_13693202	All Organisms → cellular organisms → Bacteria	548	Open in IMG/M
3300009092\|Ga0105250_10417625	Not Available	597	Open in IMG/M
3300009098\|Ga0105245_11294265	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	778	Open in IMG/M
3300009100\|Ga0075418_12608516	Not Available	552	Open in IMG/M
3300009148\|Ga0105243_11241703	All Organisms → cellular organisms → Bacteria	760	Open in IMG/M
3300009148\|Ga0105243_11632667	Not Available	672	Open in IMG/M
3300009156\|Ga0111538_11938583	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	741	Open in IMG/M
3300009162\|Ga0075423_11674184	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	685	Open in IMG/M
3300009551\|Ga0105238_11859689	Not Available	635	Open in IMG/M
3300010371\|Ga0134125_10181318	All Organisms → cellular organisms → Bacteria	2345	Open in IMG/M
3300010397\|Ga0134124_10643009	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1044	Open in IMG/M
3300010398\|Ga0126383_12774382	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Alcaligenaceae → Pusillimonas (ex Stolz et al. 2005) → Pusillimonas noertemannii	572	Open in IMG/M
3300010399\|Ga0134127_12804371	Not Available	567	Open in IMG/M
3300010403\|Ga0134123_12462843	Not Available	586	Open in IMG/M
3300012493\|Ga0157355_1018622	Not Available	625	Open in IMG/M
3300012506\|Ga0157324_1018753	All Organisms → cellular organisms → Bacteria	682	Open in IMG/M
3300012891\|Ga0157305_10138237	Not Available	643	Open in IMG/M
3300012901\|Ga0157288_10234457	All Organisms → cellular organisms → Bacteria → Terrabacteria group	606	Open in IMG/M
3300012913\|Ga0157298_10189277	All Organisms → cellular organisms → Bacteria	651	Open in IMG/M
3300012914\|Ga0157297_10270133	Not Available	625	Open in IMG/M
3300012961\|Ga0164302_10388644	All Organisms → cellular organisms → Bacteria	947	Open in IMG/M
3300012961\|Ga0164302_10838204	Not Available	698	Open in IMG/M
3300012984\|Ga0164309_11156625	All Organisms → cellular organisms → Bacteria	647	Open in IMG/M
3300012985\|Ga0164308_11053423	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	726	Open in IMG/M
3300012988\|Ga0164306_11360229	Not Available	602	Open in IMG/M
3300013296\|Ga0157374_12955560	Not Available	502	Open in IMG/M
3300013297\|Ga0157378_10583754	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1127	Open in IMG/M
3300014320\|Ga0075342_1196952	Not Available	567	Open in IMG/M
3300015372\|Ga0132256_101987398	All Organisms → cellular organisms → Bacteria	688	Open in IMG/M
3300015372\|Ga0132256_103335478	Not Available	540	Open in IMG/M
3300015372\|Ga0132256_103392800	Not Available	536	Open in IMG/M
3300015374\|Ga0132255_100309389	All Organisms → cellular organisms → Bacteria	2277	Open in IMG/M
3300015374\|Ga0132255_104504743	Not Available	590	Open in IMG/M
3300017947\|Ga0187785_10307023	Not Available	732	Open in IMG/M
3300018064\|Ga0187773_10582246	Not Available	681	Open in IMG/M
3300020070\|Ga0206356_10063376	All Organisms → cellular organisms → Bacteria	728	Open in IMG/M
3300022883\|Ga0247786_1011472	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae	1639	Open in IMG/M
3300022883\|Ga0247786_1015593	All Organisms → cellular organisms → Bacteria	1413	Open in IMG/M
3300023275\|Ga0247776_10396103	Not Available	507	Open in IMG/M
3300024055\|Ga0247794_10054210	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1107	Open in IMG/M
3300025909\|Ga0207705_11061330	Not Available	625	Open in IMG/M
3300025917\|Ga0207660_10188947	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae	1603	Open in IMG/M
3300025921\|Ga0207652_10257893	All Organisms → cellular organisms → Bacteria	1573	Open in IMG/M
3300025930\|Ga0207701_11484946	Not Available	549	Open in IMG/M
3300025931\|Ga0207644_11442149	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	578	Open in IMG/M
3300025934\|Ga0207686_10627985	All Organisms → cellular organisms → Bacteria	848	Open in IMG/M
3300025934\|Ga0207686_11392608	Not Available	577	Open in IMG/M
3300025937\|Ga0207669_10940074	All Organisms → cellular organisms → Bacteria	724	Open in IMG/M
3300025942\|Ga0207689_10068571	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2915	Open in IMG/M
3300025972\|Ga0207668_12080931	Not Available	511	Open in IMG/M
3300026035\|Ga0207703_11143555	All Organisms → cellular organisms → Bacteria	748	Open in IMG/M
3300026075\|Ga0207708_10010490	All Organisms → cellular organisms → Bacteria	6878	Open in IMG/M
3300026078\|Ga0207702_10268803	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1608	Open in IMG/M
3300026078\|Ga0207702_11509015	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	666	Open in IMG/M
3300026089\|Ga0207648_10594745	All Organisms → cellular organisms → Bacteria	1019	Open in IMG/M
3300026095\|Ga0207676_10595795	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1061	Open in IMG/M
3300026118\|Ga0207675_102413646	Not Available	538	Open in IMG/M
3300026142\|Ga0207698_12171799	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Alcaligenaceae → Pusillimonas (ex Stolz et al. 2005) → Pusillimonas noertemannii	568	Open in IMG/M
3300026884\|Ga0207455_1002856	All Organisms → cellular organisms → Bacteria	787	Open in IMG/M
3300028379\|Ga0268266_10168288	All Organisms → cellular organisms → Bacteria → Proteobacteria	1988	Open in IMG/M
3300028381\|Ga0268264_10526420	All Organisms → cellular organisms → Bacteria	1156	Open in IMG/M
3300028587\|Ga0247828_10975055	Not Available	552	Open in IMG/M
3300028592\|Ga0247822_10900025	All Organisms → cellular organisms → Bacteria	726	Open in IMG/M
3300028596\|Ga0247821_10933317	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	579	Open in IMG/M
3300028889\|Ga0247827_10800339	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	624	Open in IMG/M
3300030294\|Ga0311349_11126111	All Organisms → cellular organisms → Bacteria	734	Open in IMG/M
3300031938\|Ga0308175_100359610	All Organisms → cellular organisms → Bacteria	1507	Open in IMG/M
3300031995\|Ga0307409_101900283	Not Available	625	Open in IMG/M
3300031996\|Ga0308176_11741438	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	665	Open in IMG/M
3300032133\|Ga0316583_10362492	Not Available	501	Open in IMG/M
3300033521\|Ga0316616_104886846	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Alcaligenaceae → Pusillimonas (ex Stolz et al. 2005) → Pusillimonas noertemannii	504	Open in IMG/M
3300033550\|Ga0247829_11325485	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	595	Open in IMG/M
3300033550\|Ga0247829_11718239	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Alcaligenaceae → Pusillimonas (ex Stolz et al. 2005) → Pusillimonas noertemannii	517	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	54.90%
Host-Associated	Host-Associated	45.10%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	51.96%
Plants	Host-Associated → Plants	45.10%
Aquatic	Environmental → Aquatic	2.94%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	50.00%
Rhizosphere	Host-Associated → Plants → Rhizosphere	27.45%
Rhizoplane	Host-Associated → Plants → Rhizoplane	16.67%
Sediment	Environmental → Aquatic → Sediment	2.94%
Peat	Environmental → Terrestrial → Peat	0.98%
Plant Litter	Environmental → Terrestrial → Plant Litter	0.98%
Roots	Host-Associated → Plants → Roots	0.98%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	33.33%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	15.69%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	14.71%
Loam	Environmental → Terrestrial → Soil → Loam	12.75%
Soil	Host-Associated → Plants → Rhizosphere → Soil	11.76%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	3.92%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	2.94%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.96%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	0.98%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified	0.98%
Bulk Soil	Host-Associated → Plants → Roots → Bulk Soil	0.98%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	17.65%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	15.69%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	14.71%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	11.76%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	11.76%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	7.84%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	4.90%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	3.92%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	2.94%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	2.94%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.96%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.98%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	0.98%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified	0.98%
Unclassified	Host-Associated → Plants → Roots → Bulk Soil → Unclassified	0.98%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	8.82%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	7.84%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	7.84%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	5.88%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	4.90%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	4.90%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	4.90%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	3.92%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	3.92%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	2.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	2.94%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	2.94%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	2.94%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	2.94%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	2.94%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	2.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.96%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	1.96%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.96%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	1.96%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	1.96%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	0.98%
Unplanted Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Unplanted Soil	0.98%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.98%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Corn, Switchgrass And Miscanthus Rhizosphere	0.98%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.98%
Natural And Restored Wetlands	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands	0.98%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.98%
Fen	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen	0.98%
Plant Litter	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter	0.98%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere	0.98%
Populus Endosphere	Host-Associated → Plants → Roots → Bulk Soil → Unclassified → Populus Endosphere	0.98%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.98%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.98%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000890	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000891	Soil microbial communities from Great Prairies - Wisconsin, Continuous corn soil	Environmental	Open in IMG/M
3300002568	Grasslands soil microbial communities from Hopland, California, USA - 2	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300005336	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG	Environmental	Open in IMG/M
3300005339	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG	Host-Associated	Open in IMG/M
3300005341	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG	Environmental	Open in IMG/M
3300005355	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG	Host-Associated	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005441	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG	Environmental	Open in IMG/M
3300005455	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG	Host-Associated	Open in IMG/M
3300005535	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG	Environmental	Open in IMG/M
3300005548	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG	Host-Associated	Open in IMG/M
3300005549	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG	Environmental	Open in IMG/M
3300005614	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2	Host-Associated	Open in IMG/M
3300005615	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG	Environmental	Open in IMG/M
3300005616	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2	Host-Associated	Open in IMG/M
3300005617	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2	Host-Associated	Open in IMG/M
3300005718	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2	Host-Associated	Open in IMG/M
3300005842	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2	Host-Associated	Open in IMG/M
3300006042	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3	Host-Associated	Open in IMG/M
3300006047	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2013	Environmental	Open in IMG/M
3300006057	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2012	Environmental	Open in IMG/M
3300006059	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2012	Environmental	Open in IMG/M
3300006581	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLPB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006953	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHMB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300009092	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaG	Host-Associated	Open in IMG/M
3300009093	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG	Host-Associated	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009148	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009551	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG	Host-Associated	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300012493	Unplanted soil (control) microbial communities from North Carolina - M.Soil.10.yng.090610	Environmental	Open in IMG/M
3300012506	Arabidopsis rhizosphere microbial communities from North Carolina - M.Oy.6.old.040610	Host-Associated	Open in IMG/M
3300012891	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S148-409B-2	Environmental	Open in IMG/M
3300012901	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S119-311C-1	Environmental	Open in IMG/M
3300012913	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S043-104R-2	Environmental	Open in IMG/M
3300012914	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S028-104C-2	Environmental	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300012984	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_247_MG	Environmental	Open in IMG/M
3300012985	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MG	Environmental	Open in IMG/M
3300012988	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_242_MG	Environmental	Open in IMG/M
3300013296	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG	Host-Associated	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300014320	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushOxbow_ThreeSqA_D1	Environmental	Open in IMG/M
3300014969	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300017947	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0815_BV2_4_20_MG	Environmental	Open in IMG/M
3300018064	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP05_10_MG	Environmental	Open in IMG/M
3300020070	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-1 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022883	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S066-202C-4	Environmental	Open in IMG/M
3300023275	Plant litter microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-L199-509C-5	Environmental	Open in IMG/M
3300024055	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S046-202B-6	Environmental	Open in IMG/M
3300025909	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025917	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025921	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025930	Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)	Environmental	Open in IMG/M
3300025931	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025934	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025937	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025942	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025972	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026035	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026075	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300026078	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026089	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026095	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026118	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026142	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026884	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G05K5-12 (SPAdes)	Environmental	Open in IMG/M
3300028379	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300028381	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028587	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day3	Environmental	Open in IMG/M
3300028592	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Cellulose_Day30	Environmental	Open in IMG/M
3300028596	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Glycerol_Day14	Environmental	Open in IMG/M
3300028889	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day2	Environmental	Open in IMG/M
3300030294	II_Fen_E3 coassembly	Environmental	Open in IMG/M
3300031938	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R1	Environmental	Open in IMG/M
3300031995	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2	Host-Associated	Open in IMG/M
3300031996	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R2	Environmental	Open in IMG/M
3300032133	Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JBrBrA	Host-Associated	Open in IMG/M
3300033521	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M1_C1_D1_B	Environmental	Open in IMG/M
3300033550	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day4	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI11643J12802_100828251	3300000890	Soil	MRRKPLRWVPLAALAVVAAVVVSGALGASGQKADLSGKKVGVIICTNQNPFCAAWANSVKSGLEKQGAEVTVLSSVFDPAVDAQNM
JGI10214J12806_102893411	3300000891	Soil	MRRKPLRWVPLAALAVVAAVVVSGALGASGQKTDLSGKKVGVIICTNQNPFCAAWANSVKSGLEKQGAEVTVLS
C688J35102_1186085231	3300002568	Soil	MRRKTLRWLSLAALALAAAVFVTGALGASGQKGSLSGKKVGVIICTNQNPFCAAWANTVKSGLEKQGASVTVLSSVFDPAVDAQNMNRLIADKPDLIISVPASAS
Ga0062595_1022574431	3300004479	Soil	LHLVPLAAIAVAAAVVVSGALGAGQKRGDLSGKKVGVIICTNQNPFCAAWANTVKSGLEKQGAEVTVLSSVFDPAVDAQNMNRLI
Ga0070680_1003581732	3300005336	Corn Rhizosphere	MRRKSLRWVPLASLAVAAAVLVSGALGASGQKGDLSGKKVGVIICTNQNPFCAAWANSVKSGLEKQGAQVTVLSSVFDPAVDAQNMNRLI
Ga0070660_1006836522	3300005339	Corn Rhizosphere	MRRKSLRWVPLASLAVAAAVLVSGALGASGQKGDLSGKKVGVIICTNQNPFCAAWANSVKSGLEKQGAQVTVLSSVF
Ga0070691_109861111	3300005341	Corn, Switchgrass And Miscanthus Rhizosphere	MRRKSLRWVSLAALVIVAAVAVSGALGASGKKGALDGKKVGVIICTEQNPFCAAWAKSVKTGFEKQGAQVTVLSSVF
Ga0070671_1017968901	3300005355	Switchgrass Rhizosphere	MWRRSTRWVPLAVLGVLAAVFVSGAIGASGKTGALDGKNVGVIICTNQNPFCAAWASSVKSGLEKQGASVTVLSSVFDPAVDAQNMNRLIADKPDLI
Ga0070710_105414951	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	MTRKTTRWVSLAVLVVAAAVFTTGAMGSSKAGPLSGKKVGVIICTNQNPFCAAWANTVKSGLEKMGASVTVLSSVFDPAVDAQNMNRLIADKPNLIISV
Ga0070700_1013198912	3300005441	Corn, Switchgrass And Miscanthus Rhizosphere	MRRKPLRWVPLAALAVVAAVVVSGALGASGQKTDLSGKKVGVIICTNQNPFCAAWANTVKSGLEKQGASVTVLTSVFDPAVDAQNMNRLIADKPDLIIS
Ga0070700_1019087982	3300005441	Corn, Switchgrass And Miscanthus Rhizosphere	MWRRSTRWVPLAVLGVLAAVFVSGAIGASGKTGALDGKNVGVIICTNQNPFCAAWANSVKSGLEKQGASVTVLSSVFD
Ga0070663_1008790242	3300005455	Corn Rhizosphere	MRRKSLRWVSLAALVIVAAVAVSGAPGASGKKGALDGKKVGVIICTEQNPFCAAWAKSVKTGFEKQGAQVTVLSS
Ga0070684_1004369931	3300005535	Corn Rhizosphere	MRRKPLRWVPLAALAVVAAVVVSGALGASGQKTDLSGKKVGVIICTNQNPFCAAWANSVKSGLEKQGAQVTVLTSVFDPAVDAQNMNRL
Ga0070665_1002113621	3300005548	Switchgrass Rhizosphere	MRRKSLRWVPLAALAVVTAVFVSGALGASGKTGDLSGKNVGVIICTNQNPFCAAWANSVKSGLEKQGASVTVLSSVFDPA
Ga0070704_1022401421	3300005549	Corn, Switchgrass And Miscanthus Rhizosphere	MRRKSLRWVPLASLAVDAAVLVSGALGASGQKGDLSGKKVGVIICTNQNPFCAAWANSVKSGLEKQGAQVTVLSSVFDPAVDAQNMNRLIADKPDLIIS
Ga0068856_1018285501	3300005614	Corn Rhizosphere	MRRKSLRWVPLASLAVAAAVLVSGALGASGQKGDLSGKKVGVIICTNQNPFCAAWANSVKSGLEKQGAQVTVLSSVFDPAVDAQNMNRLIAD
Ga0070702_1007370691	3300005615	Corn, Switchgrass And Miscanthus Rhizosphere	MRRKSLRWVPLASLAVAAAVLVSGALGASGQKGDLSGKKVGVIICTNQNPFCAAWANSVKSGLEKQGAQVTVLSSVFDPAVDAQNMN
Ga0070702_1013881561	3300005615	Corn, Switchgrass And Miscanthus Rhizosphere	MRRKSLRWVSLAALVTVAAVAVSGALGASGQKGALEGKKVGVIICTEQNPFCAAWAKSVKSGFEKQGAQVTVLSSVFDPATDAQNMNRLIADK
Ga0068852_1018982832	3300005616	Corn Rhizosphere	MRRKSLRWVPLASLAVAAAVLVSGALGASGQKGDLSGKKVGVIICTNQNPFCAAWANSVKSGLEKQGAQVTVLS
Ga0068859_1023611952	3300005617	Switchgrass Rhizosphere	MRRKSLRWVPLAALAVVTAVFVSGALGASGKTSDLSGKNVGVIICTNQNPFCAAWANSVKSGLEKQGASVTVLSSVFDP
Ga0068866_105111111	3300005718	Miscanthus Rhizosphere	MWRRSTRWVPLAVLGVLAAVFVTGAIGASGKQGALDGKNVGVIICTNQNPFCAAWANSVKSGLEKQGAEVTVLSSVFDPAVDAQNMNRLIA
Ga0068858_1006712112	3300005842	Switchgrass Rhizosphere	MWRRSTRWVPLAVLGVLAAVFVSGAIGASGKTGALDGKNVGVIICTNQNPFCAAWANSVKSGLEKQGASVTVLSSVF
Ga0075368_103455441	3300006042	Populus Endosphere	MRRKPLRWVPLAALAVVAAVVVSGALGASGQKTDLSGKKVGVIICTNQNPFCAAWANSVKSGLEKQGAEVTVLSSVFDPAVDAQ
Ga0075024_1008589292	3300006047	Watersheds	MRRKSLRWVPLAALALVAAVLVSSALGASGKKGSLSGKKVGVIICTNQNPFCAAWANSVKSGFEKQGAQVTVLTSVFD
Ga0075026_1009573011	3300006057	Watersheds	MRHKKPRWAVLAGLAVVVAVAFAATALGSTTRHGSLAGKKVGVIICTEQNPFCAAWANTVKSGLEKQGASVTVLSSVFDPAVDAQNMNRLIADKPD
Ga0075017_1003431142	3300006059	Watersheds	MRHKTPRWAVLTALAVAVAVAFAATALGSTQRHGSLAGKKVGVIICTNQNPFCAAWANSVKSGLQKQGASVTVLTSVFDPGVDAQNMNRLIADKPDL
Ga0074048_126313382	3300006581	Soil	MTRKTTRWVLLAALVVTGAALSATGALGSTQAGPLSGKKVGVIICTNQNPFCAAWANSVKSGLEKQGASVTVLTSVFDPAVDAQNMNRLIADKPDLIISVP
Ga0074063_136932021	3300006953	Soil	MRHKTPRATVLAAFAVAVVVAVAFAATALGANSKRQGPLDGKNVGVIICTNQNPFCAAWSNSVKSGLEKLGANVTVLTSVFDPGVDAQNMNRLIADK
Ga0105250_104176252	3300009092	Switchgrass Rhizosphere	VLGVLAAVFVTGAIGASGKQGALDGKNVGVIICTNQNPFCAAWANSVKSGLEKQGASVTVLSSVFDPAVDAQNMNRLIADRPDLI
Ga0105240_109650231	3300009093	Corn Rhizosphere	VPLAVLGVLAAVFVSGAIGASGKTGALDGKNVGVIICTNQNPFCAAWASSVKSGLEKQGASVTVLS
Ga0105245_112942652	3300009098	Miscanthus Rhizosphere	MRRKSLRWVPLAALAVVTAVFVSGALGASGKTGDLSGKNVGVIICTNQNPFCAAWANSVKSGLEKQGASVTVLSSVFDPSVDAQNMNRLIADKPDLIISVPASASAIVP
Ga0075418_126085161	3300009100	Populus Rhizosphere	MRRKPLRWVPLAALAVVAAVVVSGALGASGQKADLSGKKVGVIICTNQNPFCAAWANTVKSGLEKQGASVTVLSSVFDP
Ga0105243_112417032	3300009148	Miscanthus Rhizosphere	MWRRSTRWVPLAVLGVLAAVFVTGAIGASGKQGALDGKNVGVIICTNQNPFCAAWANSVKSGLEKQGASVTVLSSVFDPAVDAQN
Ga0105243_116326672	3300009148	Miscanthus Rhizosphere	MRRKSLRWVPLAALAVVTAVFVSGALGASGKTGDLSGKNVGVIICTNQNPFCAAWANSVKSGLEKQGARVTVLSSVFDPAVDAQN
Ga0111538_119385831	3300009156	Populus Rhizosphere	MRRKTLRWVPLAALVVAAAVFVTGALGASGQKSALDGKKVGVIICTNQNPFCAAWANTVKSGLEKQGAEVTVLSSVFDPAVDAQ
Ga0075423_116741842	3300009162	Populus Rhizosphere	VPLVVLGVLAAVFVSGATGASGKSGALDGKNVGVIICTNQNPFCAAWANSVKSGLEKQGASVTVLSSVFD
Ga0105238_118596892	3300009551	Corn Rhizosphere	MRRKTLRWVSLAALVLAAAVFVTGALGASGQKGALDGKKVGVIICTNQNPFCAAWANSVKSGLEKQGASVTVLSSVFDPAVDAQNMNRLIADKPDLIISVPASASAI
Ga0134125_101813183	3300010371	Terrestrial Soil	VPLAVLGVLAAVFVSGAIGASGKTGALDGKNVGVIICTNQNPFCAAWASSVKSGLEKQGASVTVLSSVFDPAVDAQNMNRLIADRPDLIISVPASAS
Ga0134124_106430092	3300010397	Terrestrial Soil	VPLAVLGVLAAVFVTGAIGASGKQGALDGKNVGVIICTNQNPFCAAWANSVKSGLEKQGASVTVLSSVFDPAVD
Ga0126383_127743821	3300010398	Tropical Forest Soil	MTRKTLRWLPLAALVVAAAVFVTGALGSNKAGPLSGKKVGVIICTNQNPFCAAWANTVKSGLEKQGASVTVLSSVFDPAVDAQNMNRLIA
Ga0134127_128043711	3300010399	Terrestrial Soil	VPLAVLGVLAAVFVSGAIGASGKTGALDGKNVGVIICTNQNPFCAAWASSVKSGLEKQGASVTVLSSVFDPEVDAQNMNRLIADRPDLIISVPASA
Ga0134123_124628431	3300010403	Terrestrial Soil	MRRKSLRWVPLAALAVVTAVFVSGALGASGKTGDLSGENGGVIICTNQNPFCAAWANSVKSGLEKQGASVTVLSSVFDPAVDAQNMNRLIADKPD
Ga0157355_10186221	3300012493	Unplanted Soil	VPLAVLGVLAAVFVTGAIGASGKQGALDGKNVGVIICTNQNPFCAAWANSVKSGLEKQGASVTVLSSVFDPAVDAQNMNRLIADKPDLIISVPASASAI
Ga0157324_10187531	3300012506	Arabidopsis Rhizosphere	MWRRSTRWVPLAVLGVLAAVFVTGAIGASGKQGALDGKNVGVIICTNQNPFCAAWANSVKSGLEKQGASVTVLSSVFDPAVDAQNMNRLIADKPDLIIS
Ga0157305_101382371	3300012891	Soil	MRRKPLRWVPLAALAVVAAVVVSGALGASGQKTDLSGKKVGVIICTNQNPFCAAWANSVKSGLEKQCAEVTVLSSVFDPAVDAQNMN
Ga0157288_102344571	3300012901	Soil	VPLAVLGVLAAVFVTGAIGASGKQGALDGKNVGVIICTNQNPFCAAWANSVKSGLEKQGASVTVLSSVF
Ga0157298_101892771	3300012913	Soil	VPLAVLGVLAAVFVSGAIGASGKTGALDGKNVGVIICTNQNPFCAAWASSVKSGLEKQGASVTVLSSVFDPAVDAQNMNRLIAD
Ga0157297_102701331	3300012914	Soil	VPLAVLGVLAAVFVSGAIGASGKTGALDGKNVGVIICTNQNPFCAAWANSVKSGLEKQGASVTVLSSVFDP
Ga0164302_103886442	3300012961	Soil	VPLAVLGVLAAVFVTGAIGASGKQGALDGKNVGVIICTNQNPFCAAWANSVKSGLEKQGAQVTVLTSVFDPAVDAQNMNRLI
Ga0164302_108382041	3300012961	Soil	MRRKSLRWVSLAALVTVAAVAVSGALGASGQKGALEGKKVGVIICTEQNPFCAAWAKSVKSGFEKQGAQVTVLTSVFDPATDAQNMNRLIADKPDLIV
Ga0164309_111566251	3300012984	Soil	MRRKSLRWVPLAALAVVTAVFVSGALGASGKTGDLSGKNVGVIICTNQNPFCAAWANSVKSGLEKQGASVTVLSSVFDPAVDAQNMNRLIADKPDLIIS
Ga0164308_110534231	3300012985	Soil	MRHKTPRATVLAAFAVAVVVAVAFAATALGANSKRQGPLDGQNVGVIICTNQQPFCAAWSNSVKSGLEKDGATVTVLTSVFDPGVDAQNMNRLIADKPDLIISVP
Ga0164306_113602291	3300012988	Soil	MRRKSLRWVSLAALVIVAAVAVSGALGASGKKGALDGKKVGVIICTEQNPFCAAWAKSVKTGFEKQGASVT
Ga0157374_129555602	3300013296	Miscanthus Rhizosphere	MRRKSLRWVSLAALVIVAAVAVSGALGASGKKGALDGKKVGVIICTEQNPFCAAWAKSVKTGFEKQGAQVTVLSSVFDP
Ga0157378_105837541	3300013297	Miscanthus Rhizosphere	VPLAVLGVLAAVFVSGAIGASGKTGALDGKNVGVIICTNQNPFCAAWASSVKSGLEKQGASVTVLSSVFDPSVDSQNMNRLIADRPDLIISVPASASA
Ga0075342_11969522	3300014320	Natural And Restored Wetlands	MTMRRKPWRWVPLAALALVAAVFVTSALGAGGQNGALDGKRVGVIICTNQNPFCAAWANTVKKGLEQQGASVTVLSSVFDPAV
Ga0157376_130405041	3300014969	Miscanthus Rhizosphere	MRRKSLRWVSLAALVIVAAVAVSGAPGASGKKGALDGKKVGVIICTEQNPFCAAWAKSVKTGFEKQGAQVT
Ga0132256_1019873981	3300015372	Arabidopsis Rhizosphere	VPLVVLGVLAAVFVSGAIGASGKSGALDGKNVGVIICTNQNPFCAAWANSVKSGLEKQGASVTVLSSVFDSAVDAQNMNR
Ga0132256_1033354782	3300015372	Arabidopsis Rhizosphere	MRRKSLRWVSLAALVIVAAVAVSGAPGASGKKGALDGKKVGVIICTEQNPFCAAWAKSVKTGFEKQGAQVTVLPSIFDPAVAAQ
Ga0132256_1033928002	3300015372	Arabidopsis Rhizosphere	MTRSATRRALLLTLATAAAAVFVAVAFGAPAAGPLDGKRVGVIICTNQNPFCAAWANSVKSGLQKQGASVTVLTSVF
Ga0132255_1003093893	3300015374	Arabidopsis Rhizosphere	MWRRSTRWVPFAVLGVLAAVFVTGAIGASGKQGALDGKNVGVIICTNQNPFCAAWANSVKSGLEKQGASVTVLSSVFD
Ga0132255_1045047431	3300015374	Arabidopsis Rhizosphere	MRRKSLRWVSLAALVTVAAVAVSGALGASGQKGALEGKKVGVIICTEQNPFCAAWAKSVKSGFEKQGAQVTVLSSVFDPATDAQNMNRLIADKPDLIVSVPSSASA
Ga0187785_103070231	3300017947	Tropical Peatland	MTRMTSRWVLLAASVVAAAVFVSGALGSSSSRKSGPLSGKTVGVLICTNQNPFCAAWANSVKSGLEKLGASVTVLTSV
Ga0187773_105822461	3300018064	Tropical Peatland	MRRKTLRWVSLAAFAVAAAVFVSGALGSGSQKGSLSGKKVGVLICTNQNPFCAAWANTVKSGLEKQGASVTVLTSVFDPAVDAQNMNRLIADKVDLIISVP
Ga0206356_100633762	3300020070	Corn, Switchgrass And Miscanthus Rhizosphere	MWRRSTRWVPLAVLGVLAAVFVSGAIGASGKTGALDGKNVGVIICTNQNPFCAAWANSVKSGLEKQGASVTVLSSVFDPAVDAQNMNRLIADK
Ga0247786_10114722	3300022883	Soil	MRRKPLRWVPLAALAVVAAVVVSGALGASGQKTDLSGKKVGVIICTNQNPFCAAWANSVKSGLEKQGAEVTVLSSVFDPAVDAQNMNRLIADRPDLIISVPASASA
Ga0247786_10155932	3300022883	Soil	MWRRSTRWVPLAVLGVLAAVFVTGAIGASGKQGALDGKNVGVIICTNQNPFCAAWANSVKSGLEKQGASVTVLSSVFDPAVDAQNMNRLIADKPDLIISVPASA
Ga0247776_103961031	3300023275	Plant Litter	MWRRSTRWVPLAVLGVLAAVFVSGAIGASGKTGALDGKNVGVIICTNQNPFCAAWASSVKSGLEKQGASVTVLSSVFDPAV
Ga0247794_100542101	3300024055	Soil	MRRKPLRWVPLAALAVVAAVVVSGALGASGQKTDLSGKKVGVIICTNQNPFCAAWANSVKSGLEKQGASVTVLSSVFDPAV
Ga0207705_110613302	3300025909	Corn Rhizosphere	MRRKSLRWVSLAALVIVAAVAVSGAPGASGKKGALDGKKVGVIICTEQNPFCAAWAKSVKTGFEKQGAQVTVLSSIFDPAVDAQNMNRLIADKPDLIVSVP
Ga0207660_101889472	3300025917	Corn Rhizosphere	MRRKSLRWVPLASLAVAAAVLVSGALGASGQKGDLSGKKVGVIICTNQNPFCAAWANSVKSGLEKQGASVTVLSSV
Ga0207652_102578932	3300025921	Corn Rhizosphere	LHLVPLAAIAVAAAVVVSGALGAGQKRGDLSGKKVGVIICTNQNPFCAAWANSVKSGLEKQGASVTVLSSVFDPAVDAQNMNRLIADKPDLIISVPEIG
Ga0207701_114849462	3300025930	Corn, Switchgrass And Miscanthus Rhizosphere	MRRKSLRWVSLAALVIVAAVAVSGAPGASGKKGALDGKKVGVIICTEQNPFCAAWAKSVKTGFEKQGAQVTVLSSIFDPAVDAQNMNRL
Ga0207644_114421491	3300025931	Switchgrass Rhizosphere	MRRKSLRWVSLAALVIVAAVAVSGAPGASGKKGALDGKKVGVIICTEQNPFCAAWAKSVKTGFEKQGAQVTVLS
Ga0207686_106279852	3300025934	Miscanthus Rhizosphere	MRRKSLRWVPLAALAVVTAVFVSGALGASGKTGDLSGKNVGVIICTNQNPFCAAWANSVKSGLEKQGASVTVLSSVFDPAVDAQNMNRLIADKPDLIISVPASASAIV
Ga0207686_113926082	3300025934	Miscanthus Rhizosphere	MWRRSTRWVPLAVLGVLAAVFVTGAIGASGKQGALDGKNVGVIICTNQNPFCAAWANSVKSGLEKQGASVTVLSSVFDPAVDAQNMNRLIADKP
Ga0207669_109400741	3300025937	Miscanthus Rhizosphere	MWRRSTRWVPLAVLGVLAAVFVTGAIGASGKQGALDGKNVGVIICTNQNPFCAAWANSVKSGLEKQGASVTVLSSVFDPAVDAQNMNRLIADK
Ga0207689_100685713	3300025942	Miscanthus Rhizosphere	MWRRSTRWVPLAVLGVLAAVFVSGAIGASGKTGALDGKNVGVIICTNQNPFCAAWASSVKSGLEKQGASVTVLSSVFDP
Ga0207668_120809312	3300025972	Switchgrass Rhizosphere	MRRKSLRWVSLAALVIVAAVAVSGALGASGKKGALDGKKVGVIICTEQNPFCAAWAKSVKTGFEKQGAQVTVLSSIFDPAVDAQNMNRLIADKPDLIVSVPASAT
Ga0207703_111435552	3300026035	Switchgrass Rhizosphere	MRRKSLRWVPLAALAVVTAVFVSGALGASGKTGDLSGKNVGVIICTNQNPFCAAWANSVKSGLEKQGASVTVLSSVFDPAVDAQNMNRLIADKP
Ga0207708_100104901	3300026075	Corn, Switchgrass And Miscanthus Rhizosphere	MWRRSTRWVPLAVLGVLAAVFVSGAIGASGKTGALDGKNVGVIICTNQNPFCAAWASSVKSGLEKQGASVTVLSSVFDPAVDAQNMNRLIA
Ga0207702_102688031	3300026078	Corn Rhizosphere	MWRRSTRWVPLAVLGVLAAVFVSGAIGASGKTGALDGKNVGVIICTNQNPFCAAWANSVKSGLAKQGASVTVLSSVFDPAVDA
Ga0207702_115090152	3300026078	Corn Rhizosphere	MRRKSLRWVPLASLAVAAAVLVSGALGASGQKGDLSGKKVGVIICTNQNPFCAAWANSVKSGLEKQGAQVTVLSSVFDPAVDAQNMNRLIADKPDLIIS
Ga0207648_105947451	3300026089	Miscanthus Rhizosphere	MRRKSLRWVSLAALVIVAAVAVSGALGASGKKGALDGKKVGVIICTEQNPFCAAWAKSVKTGFEKQGAQVTVLSSVFDPAVDAQNMNRLIADKPDLI
Ga0207676_105957952	3300026095	Switchgrass Rhizosphere	MRRKPLRWVPLAALAVVAAVVVSGALGASGQKTDLSGKKVGVIICTNQNPFCAAWANSVKSGLEKQGAEVTVLSSVFDPAVDAQNMNR
Ga0207675_1024136462	3300026118	Switchgrass Rhizosphere	MRRKTLRWVSLAALAIAAAVFVTGAMGASGQKGSLSGKKVGVIICTNQNPFCAAWANTVKSGLEKQGAEVTVLSSVFDPAVDAQ
Ga0207698_121717991	3300026142	Corn Rhizosphere	MWRRSTRWVPLAVLGVLAAVFVSGAIGASGKTGALDGKNVGVIICTNQNPFCAAWASSVKSGLEKQGASVTVLSSVFDPAVDAQNMNRLIADRPDLIISVPA
Ga0207455_10028562	3300026884	Soil	MWRRSTRWVPLAVLGVLAAVFVTGAIGASGKQGALDGKNVGVIICTNQNPFCAAWANSVKSGLEKQGASVTVLSSVFDPAVDAQNMNRLIADRPDLII
Ga0268266_101682883	3300028379	Switchgrass Rhizosphere	MRRKSLRWVPLAALAVVTAVFVSGALGASGKTGDLSGKNVGVIICTNQNPFCAAWANSVKSGLEKQGASVTVLSSVFDPAVDAQNMNRLIADKPD
Ga0268264_105264202	3300028381	Switchgrass Rhizosphere	MRRKSLRWVPLAALAVVTAVFVSGALGASGKTGDLSGKNVGVIICTNQNPFCAAWANSVKSGLEKQGASVTVLSSVFDPAVDAQNMNRLIADKPDL
Ga0247828_109750551	3300028587	Soil	MRRKASRWLPLTVLVALGAVFAVGALGASAQGGPLDGKQVGVIICTNQNPFCAAWANTVKSGLERQGASVTVLTSVFDPAVDAQNMN
Ga0247822_109000251	3300028592	Soil	MRRKPLRWVPLAALAVVAAVVVSGALGASGQKADLSGKKVGVIICTNQNPFCAAWANTVKSGLEKQGAEVTVLSSVFDPAVDAQNMNRLIA
Ga0247821_109333172	3300028596	Soil	MWRRSTRWVPLAVLGVLAAVFVTGAIGASGKQGALDGKNVGVIICTNQNPFCAAWANSVKSGLEKQGASV
Ga0247827_108003392	3300028889	Soil	MRRKASRWLPLTVLVALGAVFAVGALGASAQGGPLDGKQVGVIICTNQNPFCAAWANTVKSGLERQGASVTVLTS
Ga0311349_111261111	3300030294	Fen	MRRKSLRWVPLAALAVVAAVFVSASLGAAGQKGSLSGKKVGVIICTEQNPFCAAWAKSVKTGFEKQGAQVTVLSSVFDPAVDAQNMNR
Ga0308175_1003596102	3300031938	Soil	MTRSAPRRALLLTIATALAAVFAASAVGAPAAGPLSGKRVGVLICTNQNPFCAAWANNVKRGLEKAGASVTVLTSVFDPAVDAQNMNRLIADKPDLIISVP
Ga0307409_1019002832	3300031995	Rhizosphere	MRRKTLRWVPLAALVVAAAVFVTGALGASGQKDALDGKKVGVIICTNQNPFCAAWANTVKSGLEKQGAEVTVLSSVFDPAVDAQNMNRLIADKPDLIIS
Ga0308176_117414381	3300031996	Soil	MTRSAPRRALLLTIATALAAVFAASAVGAPAAGPLSGKRVGVLICTNQNPFCAAWANNVKRGLEKAGASVTVLTSVFDPAV
Ga0316583_103624921	3300032133	Rhizosphere	MRRKSLRWVLLTAFASVVAVFATSALGATGKTGSLAGKSVGVIICTNQNPFCAAWANSVKKGLEKQGASVTVLTSVFDPAV
Ga0316616_1048868461	3300033521	Soil	MRRKPLRWALLAALALAAAAVFVAGALGSTSQRQDLAGKSVGVIICTNQNPFCAAWANSVKSGLEKQGATVTVLSSVFDPAVDAQNMNRLIADKPDLIISVPASADA
Ga0247829_113254852	3300033550	Soil	MWRRSTRWVPLAVLGVLAAVFVTGAIGASGKQGALDGKNVGVIICTNQNPFCAAWANSVKSGLEKQGASVTVLS
Ga0247829_117182391	3300033550	Soil	MRRKPLRWVPLAALAVVAAVVVSGALGASGQKTDLSGKKVGVIICTNQNPFCAAWANSVKSGLEKQGAEVTVLSSVFDPAVDAQNMNRLIADRPDLIIS

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.35
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.35
Powered by PDBe Molstar

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F101103

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign