NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Metagenome Family F100985

Metagenome Family F100985

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
Select file to download:
   Download


Overview

Basic Information
Family ID F100985
Family Type Metagenome
Number of Sequences 102
Average Sequence Length 44 residues
Representative Sequence MEALYAGLTAWGIELTVAGLAFYLLYREEQKVYKRRATKKEKV
Number of Associated Samples 64
Number of Associated Scaffolds 102

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 88.24 %
% of genes near scaffold ends (potentially truncated) 14.71 %
% of genes from short scaffolds (< 2000 bps) 64.71 %
Associated GOLD sequencing projects 57
AlphaFold2 3D model prediction Yes
3D model pTM-score0.56

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
Powered by Skylign

Most Common Taxonomy
Group Unclassified (49.020 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine
(36.274 % of family members)
Environment Ontology (ENVO) Unclassified
(74.510 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Saline → Water (saline)
(78.431 % of family members)



 ⦗Top⦘

Multiple Sequence Alignments

Select alignment to view:      
Full Alignment
Alignment of all the sequences in the family.
Sorting
Filter
Selection
Vis.elements
Color scheme
Extras
Export
Help

IDLabel
.2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56
1DelMOSum2011_100132962
2KVRMV2_1001271141
3JGI25132J35274_10932692
4JGI25132J35274_10959712
5Ga0063241_10160888
6Ga0066830_1000432511
7Ga0078893_113147613
8Ga0098038_10513847
9Ga0098040_11835403
10Ga0098044_100012014
11Ga0098044_13367403
12Ga0098054_10541717
13Ga0098054_11838983
14Ga0098054_12558723
15Ga0098055_12407244
16Ga0098036_100391513
17Ga0098036_10096628
18Ga0098036_10178333
19Ga0101666_10151282
20Ga0070747_10686492
21Ga0110931_10725012
22Ga0098052_13082952
23Ga0115652_10055164
24Ga0114993_105062172
25Ga0114932_1000109650
26Ga0114932_100079889
27Ga0114932_100086774
28Ga0114932_1001091612
29Ga0114932_105568933
30Ga0114932_107894073
31Ga0114932_107897922
32Ga0115011_104725532
33Ga0114906_11744612
34Ga0114933_100525474
35Ga0098049_12227832
36Ga0098056_12061633
37Ga0098059_10852683
38Ga0163180_104845523
39Ga0163179_100593174
40Ga0163179_101109837
41Ga0181383_11121681
42Ga0211601_11263072
43Ga0211498_101662263
44Ga0211590_101925582
45Ga0211590_102620803
46Ga0211532_100209237
47Ga0211699_1000077836
48Ga0211699_100034827
49Ga0211699_1000424911
50Ga0211699_100368614
51Ga0211699_101119373
52Ga0211699_103452362
53Ga0211587_100096627
54Ga0211587_101251633
55Ga0211576_101450571
56Ga0211558_1000170110
57Ga0211558_101887321
58Ga0211558_102614412
59Ga0211695_102704243
60Ga0211559_100710792
61Ga0211473_102369073
62Ga0211473_103690962
63Ga0211643_101302472
64Ga0211486_102547731
65Ga0211694_104158402
66Ga0211543_100616651
67Ga0211543_101248222
68Ga0211543_101566141
69Ga0211614_102790951
70Ga0211625_100114873
71Ga0211547_100591283
72Ga0211503_102220402
73Ga0209992_1000086755
74Ga0209992_100050038
75Ga0209992_100064631
76Ga0209992_100066949
77Ga0209992_100077863
78Ga0209992_1000839311
79Ga0209992_101048903
80Ga0208667_10710781
81Ga0208298_11035951
82Ga0208793_11211433
83Ga0209349_10358832
84Ga0208919_10189925
85Ga0209645_100320214
86Ga0209645_10079389
87Ga0208134_10315572
88Ga0209089_106634661
89Ga0256382_11079543
90Ga0135222_10007393
91Ga0183748_100514410
92Ga0183748_100756412
93Ga0183748_10185865
94Ga0183748_10621563
95Ga0183748_10861011
96Ga0183757_10512993
97Ga0310343_102694323
98Ga0315316_107953221
99Ga0315316_112910111
100Ga0315315_103756314
101Ga0315315_109107642
102Ga0316203_10477484
Powered by MSAViewer


 ⦗Top⦘

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Transmembrane (alpha-helical) Signal Peptide: No Secondary Structure distribution: α-helix: 57.75%    β-sheet: 0.00%    Coil/Unstructured: 42.25%
Feature Viewer
Position :
0
Zoom :
x 1
+ Add Multiple Variants

Enter the variants

Position

Original

Variant

Get Predictions
Get Predictions

Enter the variants

Position

Original

Variant

510152025303540MEALYAGLTAWGIELTVAGLAFYLLYREEQKVYKRRATKKEKVExtracel.Cytopl.Sequenceα-helicesβ-strandsCoilSS Conf. scoreTM segmentsTopol. domains
Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.56
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


 ⦗Top⦘

Gene Neighborhood

Neighboring Pfam domains


Neighboring Clusters of Orthologous Genes (COGs)



 ⦗Top⦘

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Visualization
All Organisms
Unclassified
51.0%49.0%
Download SVG
Download PNG
Download CSV
Powered by ApexCharts

Associated Scaffolds





 ⦗Top⦘

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Visualization
Marine
Deep Ocean
Seawater
Seawater
Microbial Mat
Marine
Aqueous
Marine Surface Water
Marine
Seawater
Marine
Seawater
Marine
Marine Sediment
Seawater
Marine Harbor
Deep Subsurface
Volcanic Co2 Seep Seawater
28.4%2.9%3.9%36.3%14.7%
Download SVG
Download PNG
Download CSV
Powered by ApexCharts



Associated Samples


Geographical Distribution
Zoom:     Powered by OpenStreetMap



 ⦗Top⦘

Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
DelMOSum2011_1001329623300000115MarineMQAFYAGLTAWGIELVVAGLAFYLLYREEQKVYKRRASKKEEV*
KVRMV2_10012711413300002231Marine SedimentMQALYAGLTAWGIELAVAGLAFYLLYREEQKVYKRRATKKEKVQS*
JGI25132J35274_109326923300002483MarineMKAMYAGILAWAIELSVAGLAFYLLYREEQKVYKKRASKKEIHTE*
JGI25132J35274_109597123300002483MarineMKAMYAGILAWAIELSVAGLAFYLLYREEQKVYKRRASKKEIHTE*
Ga0063241_101608883300003894MarineMEALYAGLSAWAIEIGIAILAFYLLYREEQKVYKRRAAKKEKV*
Ga0066830_10004325113300005433MarineMQALYAGLAAWGIELAVAGLAFYLLYREEQKVYKRRATKKEK
Ga0078893_1131476133300005837Marine Surface WaterMQALYAGLAAWGIELAVAGLAFYLLYREEQKVYKRRATKKEKVQS*
Ga0098038_105138473300006735MarineMQAFYAGLTAWGIELVVAGLAFYLLYREEQKVYKRRASK
Ga0098040_118354033300006751MarineMEAFYAGLTAWTIELTIAGIILYILHREEQKVYKRRQGDMDNE*
Ga0098044_1000120143300006754MarineMEAFYAGLTAWTIELTIAGIILYILHREEQKVYKRRASKKEEV*
Ga0098044_133674033300006754MarineMEALYAGLTAWTIELTIAGIILYILHREEQKVYKRRQGDMDNE*
Ga0098054_105417173300006789MarineMEAFYAGLTAWTIELTIAGIILYILHREEQKVYKRRVSKKEEV*
Ga0098054_118389833300006789MarineMEALYAGLSAWAIELGIAALAFYLLHREEQKVYKRRASKKEEV*
Ga0098054_125587233300006789MarineMNALWAGLTAWAIELTVAGIMMFVLKREEQKVYKRRKNK*
Ga0098055_124072443300006793MarineDGEAMNALWAGLTAWAIELTVAGIMMFVLKREEQKVYKRRKNK*
Ga0098036_1003915133300006929MarineMEPLYAGLLAWLIELSVAGVAFYLLRREENKVYRRREDDKTRKS*
Ga0098036_100966283300006929MarineMEALYAGLAAWGIELTVAGIAFYLLYREEQKVYRRREDDKTR*
Ga0098036_101783333300006929MarineMEALYAGLSAWAIELSIAALAFYLLYREEQKVYKRRAAKKEEVQ*
Ga0101666_101512823300007113Volcanic Co2 Seep SeawaterMQALYAGLLAWGIEITVAGLAFYLLYREEQKVYRRRKDGKTRQD*
Ga0070747_106864923300007276AqueousMEAFYAGLTAWAIELSVAGIAFYLLYREEQKVYKRRGSKKEKIHSE*
Ga0110931_107250123300007963MarineMQALYAGLTAWTIELAVAGLAFYLLYKEEQKVYKKRATKKEKISTNED*
Ga0098052_130829523300008050MarineMEAFYAGLTAWTIELTIAGIILYTLHREEQKVYKRRQGDMDNE*
Ga0115652_100551643300008624MarineMEAFYAGLTAWTIELTIAGIILYILYREEQKVYKRRASKKEEV*
Ga0114993_1050621723300009409MarineMEAFYAGTTAWTIELAIAGIILYMLYREEQKVYKRRKKEIKND*
Ga0114932_10001096503300009481Deep SubsurfaceMEALYAGLTAWGIELTVAGLAFYLLYREEQKVYKRRATKKEKV*
Ga0114932_1000798893300009481Deep SubsurfaceMEALYAGLSAWGIELSIAALAFYLLYREEQKVYKRRAAKKEEV*
Ga0114932_1000867743300009481Deep SubsurfaceMEALYAGLAAWGIELTVAGIAFYLLYREEQKVYKRRAAKKEEV*
Ga0114932_10010916123300009481Deep SubsurfaceMEAFYAGLTAWAIELSVAGLAFYLLYKEEQKVYKKRASKKEIHTE*
Ga0114932_1055689333300009481Deep SubsurfaceMQAFYAGLTAWGIELVVAGLAFYLLYREEQKVNNRRASKKEED*
Ga0114932_1078940733300009481Deep SubsurfaceAGLTAWGIELAIAGLLLYVLYREEQKVYRRRRNKDE*
Ga0114932_1078979223300009481Deep SubsurfaceMNAIYAGILAWFIELSVAGAMFLILKREESKVYKRRDAKKKEKH*
Ga0115011_1047255323300009593MarineMEALYAGLTAWGIELTVAGIAFYLLYREEQKVYKRRAAKKKEVQ*
Ga0114906_117446123300009605Deep OceanMEALYAGLTAWGIELTVAGIAFYLLYREEQKVYRRRRDDKTK*
Ga0114933_1005254743300009703Deep SubsurfaceMDALYAGLTAWAIEISVALFAFYLLYREEQKVYKRRNTKTSKVKQDG*
Ga0098049_122278323300010149MarineMEAFYAGLTAWAIELSVAGIAFYLLYREEQKVYKRRGSKKEKIHTE*
Ga0098056_120616333300010150MarineMEALLAGLTAGGIELTVAGLAFYLLYREEQKVFRRRENAKEEK*
Ga0098059_108526833300010153MarineMQALYAGLTAWTIELSVAALAFYLLYKEEQKVYKKRATKEEKVSSNED*
Ga0163180_1048455233300012952SeawaterMEAMYAGILAWAIELSVAGLAFYLLYREEQKVYKRRATKKEKV*
Ga0163179_1005931743300012953SeawaterMEALYAGLTAWGIEITVAAIAFYLLYREEQKVYRRRKNGKTK*
Ga0163179_1011098373300012953SeawaterMEPLYAGLLAWLIELGVAGAAFYLLRREENKVYRRREDDKTRKS*
Ga0181383_111216813300017720SeawaterMEAFYAGLTAWAIELSVAGIAFYLLYREEQKVYKRRGSKKE
Ga0211601_112630723300020351MarineMQALYAGLLAWGIEIAVAGLAFYLLYREEQKVYRRRKDGKTRQD
Ga0211498_1016622633300020380MarineMQALYAGLAAWGIELAVAGLAFYLLYREEQKVYKRRATKKEEVCSEENR
Ga0211590_1019255823300020387MarineMQALYAGLAAWVIELGVAGLAFYLLYREEQKVYKRRAAKKEKI
Ga0211590_1026208033300020387MarineAIYAGLSAWAIEISIAALAFYLLYREEQKVYKRRAAKKEEVQ
Ga0211532_1002092373300020403MarineMQALYAGLLAWGIEIAVASLAFYLLYREEQKVYRRRKNGKTRQD
Ga0211699_10000778363300020410MarineMQALYAGLAAWVIELGVAGLAFYLLYREEQKVYKRRATKKEKV
Ga0211699_1000348273300020410MarineMEPLYAGLLAWLIELGVAGAAFYLLRREENKVYRRREDDKTKQS
Ga0211699_10004249113300020410MarineMQALYAGLAAWGIELAVAGLAFYLLYREEQKVYKRRASKKEEIHTE
Ga0211699_1003686143300020410MarineMEALYAGLSAWAIELSIAALAFYLLYREEQKVYKRRAAKKEEVQ
Ga0211699_1011193733300020410MarineMEAIYAGLSAWAIEISIAALAFYLLYREEQKVYKRRAAKKEKV
Ga0211699_1034523623300020410MarineMEALYAGLTAWGIELTVAGIAFYLLYREEQKVYRRRKDGKR
Ga0211587_1000966273300020411MarineMQALYAGLLAWGVELAVAGLAFYLLYREEQKVYRRRKNGKR
Ga0211587_1012516333300020411MarineMEALYAGLSAWAIELAIAALAFYLLYREEQKVYKRRAAKKEKV
Ga0211576_1014505713300020438MarineTAWGIELTVAGLAFYLLYREEQKVFRRRENAKEEK
Ga0211558_10001701103300020439MarineMQALYAGLLAWGIELAVAGFAFYLLYREEQKVYRRRKNGKREE
Ga0211558_1018873213300020439MarineMQAFYAGLAAWGIELAVAGLAFYLLYREEQKVYKRRAAKKEE
Ga0211558_1026144123300020439MarineMEALYAGLSAWAIEIGIAALAFYLLYREEQKVYKRRAAKKEEVQ
Ga0211695_1027042433300020441MarineMNAIYAGILAWFIELSVAGTMFLILKREESKVYKRRDAKKKEKH
Ga0211559_1007107923300020442MarineMQALYAGLAAWGIELAVAGLAFYLLYREEQKVYKRRASKKEEVHTK
Ga0211473_1023690733300020451MarineMEALYAGLTAWAIELSVAGIAFYLLYKEEQKVYKKRASKKEIHTE
Ga0211473_1036909623300020451MarineMQAIYAGLTAWVVEVTIVLTILYLVYREEQKVYKRRTISSLL
Ga0211643_1013024723300020457MarineMDALFAGMSAWAIELTVAALAFYLLYREEQKVYKKRATNKEKISKTQD
Ga0211486_1025477313300020460MarineMEALYAGLAAWGIEITVAGIAFYLLYREEQKVYRRRKDDQTKKG
Ga0211694_1041584023300020464MarineYVDMEPLYAGLLAWLIELGVAGAAFYLLRREENKVYRRREDDKTKQS
Ga0211543_1006166513300020470MarineMEALYAGLSAWVIEIGIAALAFYLLYREEQKVYKRRA
Ga0211543_1012482223300020470MarineMQALYAGLAAWGIELAVAGLAFYLLYREEQKVYKRRATKKEEVCAEENR
Ga0211543_1015661413300020470MarineMQALYAGLLAWVLELSVAGLAFYLLYREEQKVYRRRKNG
Ga0211614_1027909513300020471MarineAGLSAWAIEIGIAALAFYLLYREEQKVYKRRAAKKEEVQ
Ga0211625_1001148733300020473MarineMEALYAGLTAWAIEIGIAILAFYLLHREEQKVYKRRAAKKEKV
Ga0211547_1005912833300020474MarineMEPLYAGLLAWLIELGVAGAAFYLLRREENKVYRRREDDKTRKS
Ga0211503_1022204023300020478MarineMEALYAGLSAWAIEIGIAALAFYLLYREEQKVYKRRAAKKEKV
Ga0209992_10000867553300024344Deep SubsurfaceMEALYAGLTAWGIELTVAGLAFYLLYREEQKVYKRRATKKEKV
Ga0209992_1000500383300024344Deep SubsurfaceMEALYAGLAAWGIELTVAGIAFYLLYREEQKVYRRREDDKTR
Ga0209992_1000646313300024344Deep SubsurfaceSVERELHMEALYAGLAAWGIELTVAGIAFYLLYREEQKVYKRRAAKKEEV
Ga0209992_1000669493300024344Deep SubsurfaceMEAFYAGLTAWAIELSVAGLAFYLLYKEEQKVYKKRASKKEIHTE
Ga0209992_1000778633300024344Deep SubsurfaceMEALYAGLSAWGIELSIAALAFYLLYREEQKVYKRRAAKKEEV
Ga0209992_10008393113300024344Deep SubsurfaceMQALYAGLTAWGIELAVAGLAFYLLYREEQKVYKRRATKKEKVQS
Ga0209992_1010489033300024344Deep SubsurfaceMEALMAGMLAWGIEITIALSMFYILHREEQKVFQRRKK
Ga0208667_107107813300025070MarineMQAFYAGLTAWGIELVVAGLAFYLLYREEQKVYKRRASKKE
Ga0208298_110359513300025084MarineMQAFYAGLTAWGIELVVAGLAFYLLYREEQKVYKRRASKKEEV
Ga0208793_112114333300025108MarineMEAFYAGLTAWTIELTIAGIILYILHREEQKVYKRRASKKEEV
Ga0209349_103588323300025112MarineMYALYAGLTAWTIELTIAGIILYILHREEQKVYKRRQGDMDNE
Ga0208919_101899253300025128MarineMQALYAGLTAWTIELAVAGLAFYLLYKEEQKVYKKRATKKEKISTNED
Ga0209645_1003202143300025151MarineMQALYAGLTAWGIEITIAGIAFYLLYREEQKVYRRRKDDQTKKG
Ga0209645_100793893300025151MarineMKAMYAGILAWAIELSVAGLAFYLLYREEQKVYKRRASKKEIHTE
Ga0208134_103155723300025652AqueousMEAFYAGLTAWAIELSVAGIAFYLLYREEQKVYKRRGSKKEKIHSE
Ga0209089_1066346613300027838MarineMEAFYAGTTAWTIELAIAGIILYMLYREEQKVYKRRKKEIKND
Ga0256382_110795433300028022SeawaterMEALYAGLTAWGIELTVAGIAFYLLYREEQKVYRRRRDDKTK
Ga0135222_100073933300029301Marine HarborMQALYAGLAAWGIELAVAGLAFYLLYREEQKVYKRRAAKKEEIHTEENR
Ga0183748_1005144103300029319MarineMQALYAGLAAWGIELAVAGLAFYLLYREEQKVYKRRGSKKEEIHTE
Ga0183748_1007564123300029319MarineMQALYAGLAAWGIELAVAGLAFYLLYREEQKVYKRRAAKKEEICTEENR
Ga0183748_101858653300029319MarineMEALYAGLSAWAIEIGIAALAFYLLYREEQKVYKRRAAKKEKVQ
Ga0183748_106215633300029319MarineMQALYAGLLAWGIEIAVASLAFYLLYREEQKVYRRRKNDKTRQD
Ga0183748_108610113300029319MarineMQALYAGLAAWGIELAVAGLAFYLLYREEQKVYKRRATKKEKVQS
Ga0183757_105129933300029787MarineMEALYAGLTAWAIELSVAGVAFYLLNKEEQKVYKRRASKKEIHTE
Ga0310343_1026943233300031785SeawaterMQAFYAGLAAWGIELAVAGLAFYLLYREEQKVYKRRASKKEEVHTK
Ga0315316_1079532213300032011SeawaterMEALYAGLTAWAIELSVAGVAFYLLNKEEQKVYKKRASKKEVSTSED
Ga0315316_1129101113300032011SeawaterMEALYAGLTAWTIELTIAGIILYILHREEQKVYKRRQGDM
Ga0315315_1037563143300032073SeawaterMDALFAGMSAWAIELTVAALGFYLLYREEQKVYKRRATKKEKISNTQD
Ga0315315_1091076423300032073SeawaterMEALYAGLTAWGIELTIAGLMFYLLYREERKCIARRSKNDDR
Ga0316203_104774843300032274Microbial MatMQALYAGLAAWTIELAVAGLAFYLLYREEQKVYKKRATKKEEVSTNED


 ⦗Top⦘


© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.