NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F100961

Metagenome / Metatranscriptome Family F100961

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F100961
Family Type Metagenome / Metatranscriptome
Number of Sequences 102
Average Sequence Length 48 residues
Representative Sequence SKLIPVYGDRQEVKTDTTIEIKWNTNDKDVVDVTPDDVEIGIIKDKQS
Number of Associated Samples 81
Number of Associated Scaffolds 102

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 0.00 %
% of genes near scaffold ends (potentially truncated) 99.02 %
% of genes from short scaffolds (< 2000 bps) 94.12 %
Associated GOLD sequencing projects 73
AlphaFold2 3D model prediction Yes
3D model pTM-score0.19

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (82.353 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous
(29.412 % of family members)
Environment Ontology (ENVO) Unclassified
(92.157 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Saline → Water (saline)
(96.078 % of family members)



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Multiple Sequence Alignments

Select alignment to view:      


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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 3.95%    β-sheet: 0.00%    Coil/Unstructured: 96.05%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.19
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 102 Family Scaffolds
PF03237Terminase_6N 12.75
PF00145DNA_methylase 0.98
PF01555N6_N4_Mtase 0.98
PF05063MT-A70 0.98
PF12236Head-tail_con 0.98

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 102 Family Scaffolds
COG4725N6-adenosine-specific RNA methylase IME4Translation, ribosomal structure and biogenesis [J] 1.96
COG0270DNA-cytosine methylaseReplication, recombination and repair [L] 0.98
COG0863DNA modification methylaseReplication, recombination and repair [L] 0.98
COG1041tRNA G10 N-methylase Trm11Translation, ribosomal structure and biogenesis [J] 0.98
COG2189Adenine specific DNA methylase ModReplication, recombination and repair [L] 0.98


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A82.35 %
All OrganismsrootAll Organisms17.65 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300000117|DelMOWin2010_c10058167All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium1645Open in IMG/M
3300001589|JGI24005J15628_10146565All Organisms → Viruses723Open in IMG/M
3300001947|GOS2218_1042657Not Available1836Open in IMG/M
3300004277|Ga0066611_10315353Not Available518Open in IMG/M
3300005432|Ga0066845_10351918Not Available570Open in IMG/M
3300006027|Ga0075462_10184410Not Available630Open in IMG/M
3300006737|Ga0098037_1163954Not Available741Open in IMG/M
3300006737|Ga0098037_1179010All Organisms → Viruses701Open in IMG/M
3300006802|Ga0070749_10074204All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Siphoviridae sp. ct8Hx232037Open in IMG/M
3300006810|Ga0070754_10394765Not Available606Open in IMG/M
3300006867|Ga0075476_10300328Not Available563Open in IMG/M
3300006874|Ga0075475_10100613Not Available1305Open in IMG/M
3300006916|Ga0070750_10141291All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium1094Open in IMG/M
3300006916|Ga0070750_10390141Not Available582Open in IMG/M
3300006919|Ga0070746_10194723All Organisms → Viruses968Open in IMG/M
3300006921|Ga0098060_1123980Not Available724Open in IMG/M
3300006928|Ga0098041_1185195Not Available667Open in IMG/M
3300006928|Ga0098041_1287603Not Available523Open in IMG/M
3300007344|Ga0070745_1296042Not Available577Open in IMG/M
3300007345|Ga0070752_1367556Not Available537Open in IMG/M
3300007539|Ga0099849_1131191All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium980Open in IMG/M
3300007542|Ga0099846_1222436Not Available661Open in IMG/M
3300008012|Ga0075480_10400633Not Available676Open in IMG/M
3300009435|Ga0115546_1182050All Organisms → Viruses732Open in IMG/M
3300009508|Ga0115567_10125524Not Available1737Open in IMG/M
3300009508|Ga0115567_10429527Not Available810Open in IMG/M
3300009790|Ga0115012_11145957Not Available651Open in IMG/M
3300010300|Ga0129351_1263406Not Available657Open in IMG/M
3300010318|Ga0136656_1032572Not Available1889Open in IMG/M
3300010368|Ga0129324_10063035All Organisms → cellular organisms → Bacteria1666Open in IMG/M
3300010368|Ga0129324_10380315Not Available547Open in IMG/M
3300010368|Ga0129324_10395728Not Available534Open in IMG/M
3300012524|Ga0129331_1340627All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium1192Open in IMG/M
3300012920|Ga0160423_10009165Not Available7800Open in IMG/M
3300017697|Ga0180120_10241857Not Available735Open in IMG/M
3300017708|Ga0181369_1018223Not Available1727Open in IMG/M
3300017708|Ga0181369_1042370All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium1040Open in IMG/M
3300017708|Ga0181369_1052152Not Available913Open in IMG/M
3300017714|Ga0181412_1132113Not Available569Open in IMG/M
3300017719|Ga0181390_1181701Not Available514Open in IMG/M
3300017721|Ga0181373_1043060All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium826Open in IMG/M
3300017721|Ga0181373_1067248Not Available641Open in IMG/M
3300017729|Ga0181396_1057746Not Available775Open in IMG/M
3300017733|Ga0181426_1132025Not Available504Open in IMG/M
3300017734|Ga0187222_1086631Not Available712Open in IMG/M
3300017735|Ga0181431_1124514Not Available574Open in IMG/M
3300017743|Ga0181402_1028811Not Available1554Open in IMG/M
3300017744|Ga0181397_1140723Not Available620Open in IMG/M
3300017750|Ga0181405_1088075Not Available788Open in IMG/M
3300017750|Ga0181405_1137709Not Available606Open in IMG/M
3300017751|Ga0187219_1120208Not Available779Open in IMG/M
3300017755|Ga0181411_1182328Not Available595Open in IMG/M
3300017758|Ga0181409_1251842Not Available501Open in IMG/M
3300017759|Ga0181414_1185654Not Available539Open in IMG/M
3300017762|Ga0181422_1130428Not Available776Open in IMG/M
3300017762|Ga0181422_1199221Not Available604Open in IMG/M
3300017765|Ga0181413_1050480Not Available1289Open in IMG/M
3300017765|Ga0181413_1163934Not Available669Open in IMG/M
3300017773|Ga0181386_1198934Not Available602Open in IMG/M
3300017779|Ga0181395_1248239Not Available545Open in IMG/M
3300017781|Ga0181423_1358047Not Available530Open in IMG/M
3300017783|Ga0181379_1316653Not Available528Open in IMG/M
3300017956|Ga0181580_10200091Not Available1403Open in IMG/M
3300018416|Ga0181553_10107102Not Available1716Open in IMG/M
3300019756|Ga0194023_1105829Not Available569Open in IMG/M
3300021378|Ga0213861_10309598Not Available808Open in IMG/M
3300021389|Ga0213868_10573065Not Available595Open in IMG/M
3300022168|Ga0212027_1026477Not Available777Open in IMG/M
3300022169|Ga0196903_1033625Not Available604Open in IMG/M
3300022187|Ga0196899_1049662Not Available1382Open in IMG/M
3300022187|Ga0196899_1179127Not Available572Open in IMG/M
3300022925|Ga0255773_10142766All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium1174Open in IMG/M
(restricted) 3300023109|Ga0233432_10434875Not Available565Open in IMG/M
3300025101|Ga0208159_1004133All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium4657Open in IMG/M
3300025108|Ga0208793_1086740Not Available895Open in IMG/M
3300025120|Ga0209535_1200423Not Available562Open in IMG/M
3300025137|Ga0209336_10094557All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium853Open in IMG/M
3300025168|Ga0209337_1222630Not Available747Open in IMG/M
3300025168|Ga0209337_1348167Not Available509Open in IMG/M
3300025645|Ga0208643_1130485Not Available656Open in IMG/M
3300025653|Ga0208428_1174264Not Available564Open in IMG/M
3300025751|Ga0208150_1182528Not Available653Open in IMG/M
3300025751|Ga0208150_1182952Not Available653Open in IMG/M
3300025759|Ga0208899_1096714All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium1111Open in IMG/M
3300025759|Ga0208899_1100042All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium1084Open in IMG/M
3300025769|Ga0208767_1212836Not Available638Open in IMG/M
3300025769|Ga0208767_1269812Not Available518Open in IMG/M
3300025803|Ga0208425_1139996Not Available543Open in IMG/M
3300025810|Ga0208543_1011968Not Available2213Open in IMG/M
3300025853|Ga0208645_1045223Not Available2142Open in IMG/M
3300025876|Ga0209223_10369500Not Available624Open in IMG/M
3300025876|Ga0209223_10422531Not Available563Open in IMG/M
3300025886|Ga0209632_10328235Not Available752Open in IMG/M
3300025886|Ga0209632_10470808Not Available581Open in IMG/M
3300025889|Ga0208644_1278418Not Available676Open in IMG/M
3300025897|Ga0209425_10315563Not Available777Open in IMG/M
3300025897|Ga0209425_10341139All Organisms → Viruses735Open in IMG/M
3300025897|Ga0209425_10421267Not Available635Open in IMG/M
3300028197|Ga0257110_1173602Not Available852Open in IMG/M
3300031851|Ga0315320_10182317Not Available1557Open in IMG/M
3300032073|Ga0315315_11586509Not Available564Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
AqueousEnvironmental → Aquatic → Marine → Coastal → Unclassified → Aqueous29.41%
SeawaterEnvironmental → Aquatic → Marine → Strait → Unclassified → Seawater21.57%
MarineEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine19.61%
Pelagic MarineEnvironmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine6.86%
Freshwater To Marine Saline GradientEnvironmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient5.88%
Salt MarshEnvironmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh2.94%
Pelagic MarineEnvironmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine2.94%
SeawaterEnvironmental → Aquatic → Marine → Coastal → Unclassified → Seawater1.96%
SeawaterEnvironmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater1.96%
FreshwaterEnvironmental → Aquatic → Freshwater → River → Unclassified → Freshwater0.98%
MarineEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine0.98%
Surface SeawaterEnvironmental → Aquatic → Marine → Oceanic → Photic Zone → Surface Seawater0.98%
SeawaterEnvironmental → Aquatic → Marine → Inlet → Unclassified → Seawater0.98%
MarineEnvironmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine0.98%
MarineEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Marine0.98%
MarineEnvironmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine0.98%

Visualization
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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OIDSample NameHabitat TypeIMG/M Link
3300000117Marine microbial communities from Delaware Coast, sample from Delaware MO Winter December 2010EnvironmentalOpen in IMG/M
3300001589Marine viral communities from the Pacific Ocean - LP-40EnvironmentalOpen in IMG/M
3300001947Marine microbial communities from the Gulf of Maine, Canada - GS002EnvironmentalOpen in IMG/M
3300004277Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI075_LV_DNA_200mEnvironmentalOpen in IMG/M
3300005432Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201310SV78EnvironmentalOpen in IMG/M
3300006027Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_30_<0.8_DNAEnvironmentalOpen in IMG/M
3300006737Marine viral communities from the Subarctic Pacific Ocean - 5_ETSP_OMZ_AT15132 metaGEnvironmentalOpen in IMG/M
3300006802Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18EnvironmentalOpen in IMG/M
3300006810Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Sep_01EnvironmentalOpen in IMG/M
3300006867Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_N_<0.8_DNAEnvironmentalOpen in IMG/M
3300006874Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_D_>0.8_DNAEnvironmentalOpen in IMG/M
3300006916Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_24EnvironmentalOpen in IMG/M
3300006919Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_21EnvironmentalOpen in IMG/M
3300006921Marine viral communities from the Subarctic Pacific Ocean - 21_ETSP_OMZ_AT15319 metaGEnvironmentalOpen in IMG/M
3300006928Marine viral communities from the Subarctic Pacific Ocean - 8_ETSP_OMZ_AT15162 metaGEnvironmentalOpen in IMG/M
3300007344Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_4EnvironmentalOpen in IMG/M
3300007345Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_30EnvironmentalOpen in IMG/M
3300007539Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1M Viral MetaGEnvironmentalOpen in IMG/M
3300007542Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_1 Viral MetaGEnvironmentalOpen in IMG/M
3300008012Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_N_<0.8_DNAEnvironmentalOpen in IMG/M
3300009435Pelagic marine microbial communities from North Sea - COGITO_mtgs_100413EnvironmentalOpen in IMG/M
3300009508Pelagic marine microbial communities from North Sea - COGITO_mtgs_120412EnvironmentalOpen in IMG/M
3300009790Marine eukaryotic phytoplankton communities from Atlantic Ocean - Tropical Atlantic ANT10 MetagenomeEnvironmentalOpen in IMG/M
3300010300Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_27_0.2_DNAEnvironmentalOpen in IMG/M
3300010318Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_15_0.8_DNAEnvironmentalOpen in IMG/M
3300010368Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Spr_15_0.2_DNAEnvironmentalOpen in IMG/M
3300012524Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Spr_31_0.2_RNA1 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300012920Marine microbial communities from the Costa Rica Dome - CRUD Field 142mm St8 metaGEnvironmentalOpen in IMG/M
3300017697Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Spr_31_0.2_DNA (version 2)EnvironmentalOpen in IMG/M
3300017708Marine viral communities from the Subarctic Pacific Ocean - Lowphox_04 viral metaGEnvironmentalOpen in IMG/M
3300017714Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 35 SPOT_SRF_2012-08-15EnvironmentalOpen in IMG/M
3300017719Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 13 SPOT_SRF_2010-07-21EnvironmentalOpen in IMG/M
3300017721Marine viral communities from the Subarctic Pacific Ocean - Lowphox_09 viral metaGEnvironmentalOpen in IMG/M
3300017729Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 19 SPOT_SRF_2011-01-11EnvironmentalOpen in IMG/M
3300017733Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 49 SPOT_SRF_2013-12-23EnvironmentalOpen in IMG/M
3300017734Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 4 SPOT_SRF_2009-09-24 (version 2)EnvironmentalOpen in IMG/M
3300017735Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 54 SPOT_SRF_2014-05-21EnvironmentalOpen in IMG/M
3300017743Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 25 SPOT_SRF_2011-08-17EnvironmentalOpen in IMG/M
3300017744Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 20 SPOT_SRF_2011-02-23EnvironmentalOpen in IMG/M
3300017750Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 28 SPOT_SRF_2011-11-29EnvironmentalOpen in IMG/M
3300017751Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 13 SPOT_SRF_2010-07-21 (version 2)EnvironmentalOpen in IMG/M
3300017755Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 34 SPOT_SRF_2012-07-09EnvironmentalOpen in IMG/M
3300017758Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 32 SPOT_SRF_2012-05-30EnvironmentalOpen in IMG/M
3300017759Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 37 SPOT_SRF_2012-11-28EnvironmentalOpen in IMG/M
3300017762Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 45 SPOT_SRF_2013-07-18EnvironmentalOpen in IMG/M
3300017765Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 36 SPOT_SRF_2012-09-28EnvironmentalOpen in IMG/M
3300017773Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 9 SPOT_SRF_2010-03-24EnvironmentalOpen in IMG/M
3300017779Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 18 SPOT_SRF_2010-12-16EnvironmentalOpen in IMG/M
3300017781Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 46 SPOT_SRF_2013-08-14EnvironmentalOpen in IMG/M
3300017783Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 2 SPOT_SRF_2009-07-10EnvironmentalOpen in IMG/M
3300017956Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071403BT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300018416Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011502XT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300019756Freshwater microbial communities from the Broadkill River, Lewes, Delaware, United States ? IW6Sep16_MGEnvironmentalOpen in IMG/M
3300021378Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO131EnvironmentalOpen in IMG/M
3300021389Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO127EnvironmentalOpen in IMG/M
3300022168Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_31 (v2)EnvironmentalOpen in IMG/M
3300022169Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_2 Viral MetaG (v3)EnvironmentalOpen in IMG/M
3300022187Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Sep_01 (v3)EnvironmentalOpen in IMG/M
3300022925Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011502XT metaGEnvironmentalOpen in IMG/M
3300023109 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_122_August2016_10_MGEnvironmentalOpen in IMG/M
3300025101Marine viral communities from the Subarctic Pacific Ocean - 9_ETSP_OMZ_AT15188 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025108Marine viral communities from the Subarctic Pacific Ocean - 17_ETSP_OMZ_AT15314 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025120Marine viral communities from the Pacific Ocean - LP-28 (SPAdes)EnvironmentalOpen in IMG/M
3300025137Marine viral communities from the Pacific Ocean - LP-32 (SPAdes)EnvironmentalOpen in IMG/M
3300025168Marine viral communities from the Pacific Ocean - LP-53 (SPAdes)EnvironmentalOpen in IMG/M
3300025645Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_12 (SPAdes)EnvironmentalOpen in IMG/M
3300025653Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_N_>0.8_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025751Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_D_>0.8_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025759Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_24 (SPAdes)EnvironmentalOpen in IMG/M
3300025769Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_21 (SPAdes)EnvironmentalOpen in IMG/M
3300025803Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_30_<0.8_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025810Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_30_>0.8_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025853Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Sep_01 (SPAdes)EnvironmentalOpen in IMG/M
3300025876Pelagic Microbial community sample from North Sea - COGITO 998_met_06 (SPAdes)EnvironmentalOpen in IMG/M
3300025886Pelagic Microbial community sample from North Sea - COGITO 998_met_10 (SPAdes)EnvironmentalOpen in IMG/M
3300025889Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18 (SPAdes)EnvironmentalOpen in IMG/M
3300025897Pelagic Microbial community sample from North Sea - COGITO 998_met_05 (SPAdes)EnvironmentalOpen in IMG/M
3300026270Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP2014F12-01SV265 (SPAdes)EnvironmentalOpen in IMG/M
3300028197Marine microbial communities from Northeast Subartic Pacific Ocean, Canada - LP_J_2015_P26_10mEnvironmentalOpen in IMG/M
3300031851Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 40m 21515EnvironmentalOpen in IMG/M
3300032073Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 40m 3416EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
DelMOWin2010_1005816713300000117MarineKLIPVYGDRQEVKTDTTIEIKWNTNDKDVVDVTPTTEEVGS*
JGI24005J15628_1014656513300001589MarineTDTTIEIKWNTAVIPTDKNVVDVTPTVEEIGNIKDKQS*
GOS2218_104265733300001947MarineYGDRQEVKTDTTIEIKWNTNDKNVVDVTPDDVEIGIIKDK*
Ga0066611_1031535323300004277MarineSKLIPVYGDRQEVKTDTTIEIKWNTNDKDVVDVTPNDVDVGIIKDKQT*
Ga0066845_1035191823300005432MarineEKVQLAKWLASKLIPVYGDRQEIKQDTKIEIAWSTNKEDVVDVTPDVEEVGITEQK*
Ga0075462_1018441013300006027AqueousKLIPVYGDRQEVKTDTTIEIKWNTTDKEVVDVTPTVDEIGIIKDKQS*
Ga0098037_116395433300006737MarineLASKLIPVYGDRQEVKTDTTIEIKWNTAVIPTDKNVVDVTPTAEEIGS*
Ga0098037_117901013300006737MarineKTDTTIEIKWNTNDKDVVDVTPDDAEVGIIKDKQS*
Ga0070749_1007420413300006802AqueousAKWLASKLIPVYGDKQEIKQETKIEIAWSSNKDNVVDVTPEDKEFGIIETAKV*
Ga0070754_1039476513300006810AqueousKLIPVYGDRQEVKTDTTIEIKWNTNDKNVVDLTPDDVEIGIIKDK*
Ga0075476_1030032813300006867AqueousEKVGLAKWLASKLIPVYGDRQEVKTDTTIEIKWNTNDKDVVDVTPGVEEIGIIKDKQS*
Ga0075475_1010061333300006874AqueousKWLASKLIPVYGDKQEIKQETKIEIAWSSNKDNVVDVTPDDAEMVITEAAKT*
Ga0070750_1014129113300006916AqueousKWMCSKLIPVYGDKQEIKQETKIEIAWSNPNKDVVDITPDVEEVGIKDLAKS*
Ga0070750_1039014123300006916AqueousYGDRQEVKTDTTIEIKWNTTDKEVVDVTPTVNEIGIIKDKQS*
Ga0070746_1019472333300006919AqueousEKVQLAKWLASKLIPVYGDKQEIKQETKIEIAWSTNTKDIVNVTPEDGE*
Ga0098060_112398013300006921MarineLIPVYGDRQEVKTDTTIEIKWNTDNKEVVNVTPDDVEVGIIKDK*
Ga0098041_118519513300006928MarineKVGLAKWLASKLIPVYGDRQEVKTDTTIEIKWNTNDKDVVDVTPDDTEVGIIKDKQS*
Ga0098041_128760313300006928MarineASKLIPVYGDRQEIKQDTKIEIAWSTNKEDVVDVTPDVEEVGITEQK*
Ga0070745_129604213300007344AqueousAKWLASKLIPVYGDKQEIKQETKIEIAWSSNKDNVVDVTPEDKEFGIIEVAKD*
Ga0070752_136755613300007345AqueousGLAKWLASKLIPVYGDRQEVKTDTTIEIKWNTNDKDVVDVTPGVEEIGIIKDKQS*
Ga0099849_113119133300007539AqueousEKVGLAKWLASKLIPVYGDRQEVKTDTTIEIKWNTTDKEVVDVTPGHEEIGIIKDKQS*
Ga0099846_122243613300007542AqueousREKVQLAKWLASKLIPVYGDKQEIKQETKIEIAWSSNKDNVVDVTPEDKEFGIIEVAKD*
Ga0075480_1040063313300008012AqueousRQEVKTDTTIEIKWNTNDKDVVDVTPTVEEIGIIKDKQS*
Ga0115546_118205013300009435Pelagic MarineEVKTDTTIEIKWNTAVIPTDKNVVDVTPTVEEIGIIKDKQS*
Ga0115567_1012552433300009508Pelagic MarineLAKWLASKLIPVYGDRQEVKTDTTIEIKWNTNDKDVVDVTPTTEEVGS*
Ga0115567_1042952713300009508Pelagic MarineKWLASKLIPVYGDRQEVKTDTTIEIKWNTAVLPTDKNVVDVTPTVDEIGIIKDKQS*
Ga0115012_1114595733300009790MarineLAKWLASKLIPVYGDRQEVKTDTTIEIKWNTNDKDVVDVTPDDVEVGIIKDKQS*
Ga0129351_126340623300010300Freshwater To Marine Saline GradientKVGLAKWLASKLIPVYGDRQEVKTDTTIEIKWNTSDKEVVDVTPNDVEVGIIKDKQS*
Ga0136656_103257233300010318Freshwater To Marine Saline GradientVREKVQLAKWLASKLIPVYGDKQEIKQETKIEIAWSTNTKDIVNVTPEDGE*
Ga0129324_1006303513300010368Freshwater To Marine Saline GradientLASKLIPVYGDRQEVKTDTTIEIKWNTNDKDVVDVTPNDVEVGIIKDK*
Ga0129324_1038031523300010368Freshwater To Marine Saline GradientASKLIPVYGDRQEVKTDTTIEIKWNTNDKDVVDVTPTTEEIGIIKDKQS*
Ga0129324_1039572823300010368Freshwater To Marine Saline GradientLASKLIPVYGDRQEVKTDTTIEIKWNTNDKDVVDVTPTTEEIGS*
Ga0129331_134062733300012524AqueousLIPVYGDRQEVKTDTTIEIKWNTNDKDVVDVTPGVDEIGIIKDKQS*
Ga0160423_10009165163300012920Surface SeawaterAKWLASKLIPVYGERQEVKTDTTIEIKWNTAVIPTDKNVVDLTPTAEEIGS*
Ga0180120_1024185713300017697Freshwater To Marine Saline GradientPVYGDRQEVKTDTTIEIKWNTSDKEVVDVTPNDVEVGIIKDKQS
Ga0181369_101822333300017708MarineVQLTKWLASKQIPVYGDRQEIKQDTKIEIAWSNNKDDVVDVTPDDAEMVITEAAKS
Ga0181369_104237013300017708MarineVKTDTTIEIKWNTNDKNVVDVTPAAEEIGIMKDKQS
Ga0181369_105215243300017708MarineYGDRQEVKTDTTIEIKWSTDNKEVVDVTPDDVEVGIIKDKQS
Ga0181412_113211313300017714SeawaterGDRQEVKTDTTIEIKWSTDNKEVVDVTPDDVEVGS
Ga0181390_118170113300017719SeawaterVKTDTTIEIKWSTDNKEVVDVTPDDVEVGIIKDKQS
Ga0181373_104306033300017721MarineRQEVKTDTTIEIKWNTNDKNVVDVTPAAEEIGIIKDK
Ga0181373_106724833300017721MarineYGDRQEVKTDTTIEIKWNTNDKDVVDVSPDAEEIGIMKDKQS
Ga0181396_105774613300017729SeawaterGLAKWLASKLIPVYGDRQEVKTDTTIEIKWNTTDKEVVDVTPDDVEVGIIKDK
Ga0181426_113202523300017733SeawaterLASKLIPVYGDRQEVKTDTTIEIKWNTAVLPTDKNVVDVTPGVDEIGIIKDKQS
Ga0187222_108663133300017734SeawaterLAKWLASKLIPVYGDRQEVKTDTTIEIKWNTSDKEVVDVTPNDVEVGIIKDKQT
Ga0181431_112451413300017735SeawaterLIPVYGDRQEVKTDTTIEIKWNTSDNKVVDVTPDDVKVGS
Ga0181402_102881143300017743SeawaterGLAKWLASKLIPVYGDRQEVKTDTTIEIKWNTSDKDVVDVTPNDVEIGIIKDKQT
Ga0181397_114072323300017744SeawaterSKLIPVYGDRQEVKTDTTIEIKWNTSDNKVVDVTPDDVKVGS
Ga0181405_108807513300017750SeawaterKVGLAKWLASKLIPVYGDRQEVKTDTTIEIKWNTSDKDVVDVTPNDVEIGIIKDKQT
Ga0181405_113770913300017750SeawaterDSKLIPVYGDRQEVKTDTTIEIKWNTAVLPTDKNVVDVTPTVDEIVNIEDKQS
Ga0187219_112020813300017751SeawaterGLAKWLASKLIPVYGDRQEVKTDTTIEIKWNTTDKEVVDVTPDDVEVGIIKDKQS
Ga0181411_118232813300017755SeawaterKVGLAKWLASKLIPVYGDRQEVKTDTTIEIKWSTDNKEVVDVTPDDVKVGS
Ga0181409_125184213300017758SeawaterASKLIPIYGDRQEVKTDTTIEIKWSVPDNKTIDVTPATEEIGIKDNKQS
Ga0181414_118565413300017759SeawaterLAKWLASKLIPVYGDRQEIKQDTKIEIAWSTNKEDVVDVTPDVEEVGITEQK
Ga0181422_113042833300017762SeawaterGLAKWLASKLIPVYGDRQEVKTDTTIEIKWNTSDNKEVVDVTPDDVEVGIIKDK
Ga0181422_119922113300017762SeawaterEVKTDTTIEIKWNTNDKDVVDVTPDDVEVGIIKDKQS
Ga0181413_105048013300017765SeawaterVYGDRQEVKTDTTIEIKWNTTDKEVVDVTPDDVEVGIIKDK
Ga0181413_116393413300017765SeawaterKWLASKLIPVYGDRQEVKTDTTIEIKWSTDNKEVVDVTPDDVEVGS
Ga0181386_119893413300017773SeawaterLIPVYGDRQEVKTDTTIEIKWNTTDKEVVDVTPDDVEVGIIKDKQS
Ga0181395_124823923300017779SeawaterWLASKLIPVYGDRQEVKTDTTIEIKWNTSDKDVVDVTPNDVEIGIIKDKQT
Ga0181423_135804723300017781SeawaterLASKLIPVYGDRQEVKTDTTIEIKWNTTDKEVVDVTPTVDEIGIIKDKQS
Ga0181379_131665313300017783SeawaterKLIPVYGDRQEVKTDTTIEIKWSTDNKEVVDVTPDDVEVGIIKDK
Ga0181580_1020009113300017956Salt MarshIPVYGDRQEVKTDTTIEIKWNTNDKDVVDVTPGVDEIGIIKDKQS
Ga0181553_1010710213300018416Salt MarshKVGLAKWLASKLIPVYGDRQEVKTDTTIEIKWNTSDNKVVDVTPGVDEVGS
Ga0194023_110582913300019756FreshwaterVGLAKWLASKLIPVYGDRQEVKTDTTIEIKWNTNDKDVVDVTPGVEEIGIIKDKQS
Ga0213861_1030959833300021378SeawaterLASKLIPVYGDRQEVKTDTTIEIKWNTSDKEVVDVTPNDVEVGIIKDKQS
Ga0213868_1057306513300021389SeawaterGLAKWLASKLIPVYGDRQEVKTDTTIEIKWNTNDKDVVDVTPTTEEIGS
Ga0212027_102647713300022168AqueousGDRQEVKTDTTIEIKWNTNDKDVVDVTPGVEEIGIIKDKQS
Ga0196903_103362533300022169AqueousVKTDTTIEIKWNTNDKDVVDVTPTVEEIGIIKDKQS
Ga0196899_104966233300022187AqueousSKLIPVYGDRQEVKTDTTIEIKWNTTDKEVVDVTPGHEEIGIIKDKQS
Ga0196899_117912713300022187AqueousGLAKWLASKLIPVYGDRQEVKTDTTIEIKWNTNDKDVVDVTPGVEEIGIIKDKQS
Ga0255773_1014276613300022925Salt MarshKVGLAKWLASKLIPVYGDRQEVKTDTTIEIKWNTNDKDVVDVTPGVDEIGIIKDKQS
(restricted) Ga0233432_1043487513300023109SeawaterSKLIPVYGDRQEVKTDTTIEIKWNTNDKDVVDVTPDDVEIGIIKDKQS
Ga0208159_1004133113300025101MarineLIPVYGDRQEVKTDTTIEIKWNTDNNKVVDVTPDDAEVGIIKDKQS
Ga0208793_108674033300025108MarineGLAKWLASKLIPVYGDRQEVKTDTTIEIKWNTNDKDVVDVTPNDVEVGIIKDKQS
Ga0209535_120042323300025120MarineSKLIPVYGDRQEVKTDTTIEIKWNTAVIPTDKNVVDVTPTVEEIVNTEDK
Ga0209336_1009455733300025137MarineVKTDTTIEIKWNTAVIPTDKNVVDVTPTVEEIGIIKDK
Ga0209337_122263033300025168MarinePIYGDRQEVKTDTTIEIKWNTSDNKTVDVTPNDVEIGIVKDK
Ga0209337_134816723300025168MarineKLIPIYGDRQEVKTDTTIEIKWSIPDDKTIDVTPAVEEIGSIKDK
Ga0208643_113048533300025645AqueousKLIPVYGDRQEVKTDTTIEIKWNTNDKNVVDVTPDDVEVGIIKDK
Ga0208428_117426423300025653AqueousWLASKLIPVYGDRQEVKTDTTIEIKWNTTDKEVVDVTPGHEEIGIIKDKQS
Ga0208150_118252813300025751AqueousAKWLASKLIPVYGDKQEIKQETKIEIAWSSNKDNVVDVTPDDAEMVITEAAKT
Ga0208150_118295233300025751AqueousIPVYGDRQEVKTDTTIEIKWNTNDKDVVDVTPTVEEIGIIKDKQS
Ga0208899_109671433300025759AqueousVKTDTTIEIKWNTSDKEVVDVTPNDVEVGIIKDKQS
Ga0208899_110004213300025759AqueousLAKWLASKLIPVYGDKQEIKQETKIEIAWSSNKDNVVDVTPDDAEMVITEAAKT
Ga0208767_121283633300025769AqueousRQEVKTDTTIEIKWNTNDKDVVDVTPGVEEIGIIKDKQS
Ga0208767_126981213300025769AqueousLASKLIPVYGDRQEVKTDTTIEIKWNTTDKEVVDVTPGHEEIGIIKDKQS
Ga0208425_113999613300025803AqueousLIPVYGDRQEVKTDTTIEIKWNTNDKDVVDVTPGVEEIGIIKDKQS
Ga0208543_101196813300025810AqueousASKLIPVYGDRQEVKTDTTIEIKWNTNDKDVVDVTPDDVEVGIIKDK
Ga0208645_104522353300025853AqueousDRQEVKTDTTIEIKWNTNDKDVVDVTPGVEEIGIIKDKQS
Ga0209223_1036950023300025876Pelagic MarineIPVYGDRQEVKTDTTIEIKWNTSENKVVDVTPDDVEVGIIKDK
Ga0209223_1042253113300025876Pelagic MarineGLAKWLASKLIPVYGDRQEVKTDTTIEIKWNTNDKDVVDVTPTTEEVGS
Ga0209632_1032823533300025886Pelagic MarineKVGLAKWLASKLIPVYGDRQEVKTDTTIEIKWNTNDKDVVDVTPTVDEIGIIKDKQS
Ga0209632_1047080813300025886Pelagic MarineKWLASKLIPVYGDRQEVKTDTTIEIKWNTNDKDVVDVTPTTEEIGS
Ga0208644_127841833300025889AqueousAKWLASKLIPVYGDRQEVKTDTTIEIKWNTTDKEVVDVTPTVDEIGIIKDKQS
Ga0209425_1031556333300025897Pelagic MarineLAKWLASKLIPVYGDRQEVKTDTTIEIKWNTNDKDVVDVTPTVEEIGIIKDKQS
Ga0209425_1034113913300025897Pelagic MarineGDRQEVKTDTTIEIKWNTSDNKTVDVTPNDVEVGIIKDK
Ga0209425_1042126713300025897Pelagic MarineKLIPVYGDRQEVKTDTTIEIKWNTNDKDVVEVTPTVEEIGIIKDKQS
Ga0207993_116045723300026270MarineEKVQLAKWMCSKLIPVYGDKQEIKQETKIEIAWNNNNKDVIDVTAEDVGITDLAKT
Ga0257110_117360213300028197MarineRNIMIVREKVGLAKWLASKLIPVYGDRQEVKTDTTIEIKWNTNDKNVVDVTPDDVEVGIIKDK
Ga0315320_1018231713300031851SeawaterKWLASKLIPVYGDRQEVKTDTTIEIKWNTNDKDVVDVTPTTEEIGIIKDKQS
Ga0315315_1158650913300032073SeawaterKWLASKLIPVYGDRQEVKTDTTIEIKWNTAVIPTDKNVVDVTPTVEEIGIIKDKQS


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