Metagenome Family F100951

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F100951
Family Type	Metagenome
Number of Sequences	102
Average Sequence Length	45 residues
Representative Sequence	IEDWALSVGCTSLECWGRKGWLKILKDWKCSYHILTKDLTGRMH
Number of Associated Samples	45
Number of Associated Scaffolds	102

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	97.06 %
% of genes from short scaffolds (< 2000 bps)	92.16 %
Associated GOLD sequencing projects	34
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.36

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (86.275 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean (72.549 % of family members)
Environment Ontology (ENVO)	Unclassified (98.039 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline) (94.118 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 51.39% β-sheet: 0.00% Coil/Unstructured: 48.61%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.36
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.36
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 102 Family Scaffolds
PF00963	Cohesin	0.98

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	86.27 %
All Organisms	root	All Organisms	13.73 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	86.27 %
Viruses	superkingdom	All Organisms → Viruses	8.82 %
cellular organisms	root	All Organisms → cellular organisms	4.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	86.27 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	8.82 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	4.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	86.27 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	8.82 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	2.94 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	86.27 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	8.82 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1.96 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	86.27 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	8.82 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	1.96 %
Verrucomicrobiae	class	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	86.27 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	8.82 %
Rhodospirillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	1.96 %
Verrucomicrobiales	order	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	86.27 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	8.82 %
unclassified Rhodospirillaceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae	1.96 %
Verrucomicrobia subdivision 3	family	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	86.27 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	8.82 %
Rhodospirillaceae bacterium TMED8	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium TMED8	1.96 %
Pedosphaera	genus	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → Pedosphaera	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	86.27 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	8.82 %
Rhodospirillaceae bacterium TMED8	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium TMED8	1.96 %
unclassified Pedosphaera	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → Pedosphaera → unclassified Pedosphaera	0.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	86.27 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	8.82 %
Rhodospirillaceae bacterium TMED8	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium TMED8	1.96 %
Pedosphaera sp.	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → Pedosphaera → unclassified Pedosphaera → Pedosphaera sp.	0.98 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300002514\|JGI25133J35611_10039927	Not Available	1670	Open in IMG/M
3300002518\|JGI25134J35505_10034585	Not Available	1384	Open in IMG/M
3300006750\|Ga0098058_1040411	All Organisms → cellular organisms → Bacteria	1334	Open in IMG/M
3300006751\|Ga0098040_1066624	Not Available	1106	Open in IMG/M
3300006753\|Ga0098039_1170331	All Organisms → cellular organisms → Bacteria → Proteobacteria	741	Open in IMG/M
3300006753\|Ga0098039_1273806	Not Available	566	Open in IMG/M
3300006988\|Ga0098064_129534	Not Available	737	Open in IMG/M
3300008216\|Ga0114898_1016439	All Organisms → Viruses → Predicted Viral	2660	Open in IMG/M
3300008216\|Ga0114898_1078791	Not Available	1009	Open in IMG/M
3300008216\|Ga0114898_1096239	Not Available	889	Open in IMG/M
3300008216\|Ga0114898_1154596	Not Available	659	Open in IMG/M
3300008216\|Ga0114898_1218263	Not Available	522	Open in IMG/M
3300008217\|Ga0114899_1048138	Not Available	1528	Open in IMG/M
3300008217\|Ga0114899_1099211	Not Available	983	Open in IMG/M
3300008217\|Ga0114899_1169552	Not Available	703	Open in IMG/M
3300008219\|Ga0114905_1029002	All Organisms → Viruses → Predicted Viral	2131	Open in IMG/M
3300008219\|Ga0114905_1222899	Not Available	601	Open in IMG/M
3300008219\|Ga0114905_1256891	Not Available	548	Open in IMG/M
3300008220\|Ga0114910_1070999	Not Available	1077	Open in IMG/M
3300008220\|Ga0114910_1104261	Not Available	842	Open in IMG/M
3300008220\|Ga0114910_1115656	Not Available	788	Open in IMG/M
3300008220\|Ga0114910_1215500	Not Available	523	Open in IMG/M
3300009412\|Ga0114903_1088962	Not Available	690	Open in IMG/M
3300009412\|Ga0114903_1103993	Not Available	628	Open in IMG/M
3300009412\|Ga0114903_1117435	Not Available	585	Open in IMG/M
3300009412\|Ga0114903_1121259	Not Available	575	Open in IMG/M
3300009413\|Ga0114902_1091292	Not Available	821	Open in IMG/M
3300009414\|Ga0114909_1047452	Not Available	1280	Open in IMG/M
3300009414\|Ga0114909_1074124	Not Available	965	Open in IMG/M
3300009414\|Ga0114909_1134149	Not Available	661	Open in IMG/M
3300009418\|Ga0114908_1025398	Not Available	2280	Open in IMG/M
3300009418\|Ga0114908_1041320	Not Available	1697	Open in IMG/M
3300009418\|Ga0114908_1161833	Not Available	713	Open in IMG/M
3300009602\|Ga0114900_1060042	Not Available	1134	Open in IMG/M
3300009602\|Ga0114900_1076816	Not Available	956	Open in IMG/M
3300009602\|Ga0114900_1123566	Not Available	690	Open in IMG/M
3300009604\|Ga0114901_1037713	Not Available	1744	Open in IMG/M
3300009604\|Ga0114901_1066919	Not Available	1195	Open in IMG/M
3300009604\|Ga0114901_1082848	All Organisms → Viruses → Predicted Viral	1037	Open in IMG/M
3300009604\|Ga0114901_1090518	Not Available	979	Open in IMG/M
3300009604\|Ga0114901_1190835	Not Available	598	Open in IMG/M
3300009604\|Ga0114901_1242392	Not Available	506	Open in IMG/M
3300009605\|Ga0114906_1003394	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium TMED8	7733	Open in IMG/M
3300009605\|Ga0114906_1129835	Not Available	883	Open in IMG/M
3300009605\|Ga0114906_1174706	Not Available	730	Open in IMG/M
3300009620\|Ga0114912_1022547	Not Available	1760	Open in IMG/M
3300009620\|Ga0114912_1043637	Not Available	1163	Open in IMG/M
3300009620\|Ga0114912_1051837	Not Available	1044	Open in IMG/M
3300010883\|Ga0133547_11924542	Not Available	1087	Open in IMG/M
3300011013\|Ga0114934_10280224	Not Available	755	Open in IMG/M
3300017718\|Ga0181375_1056035	Not Available	652	Open in IMG/M
3300017775\|Ga0181432_1254135	Not Available	555	Open in IMG/M
3300025103\|Ga0208013_1060052	Not Available	1014	Open in IMG/M
3300025112\|Ga0209349_1004618	Not Available	6049	Open in IMG/M
3300025125\|Ga0209644_1069671	Not Available	818	Open in IMG/M
3300025125\|Ga0209644_1079109	Not Available	769	Open in IMG/M
3300025141\|Ga0209756_1066440	Not Available	1677	Open in IMG/M
3300025141\|Ga0209756_1227795	Not Available	696	Open in IMG/M
3300025251\|Ga0208182_1048537	Not Available	888	Open in IMG/M
3300025264\|Ga0208029_1019804	All Organisms → Viruses → Predicted Viral	1697	Open in IMG/M
3300025264\|Ga0208029_1031996	Not Available	1215	Open in IMG/M
3300025267\|Ga0208179_1042287	Not Available	1068	Open in IMG/M
3300025267\|Ga0208179_1044933	Not Available	1022	Open in IMG/M
3300025270\|Ga0208813_1050712	Not Available	915	Open in IMG/M
3300025270\|Ga0208813_1067132	Not Available	761	Open in IMG/M
3300025274\|Ga0208183_1032676	Not Available	1112	Open in IMG/M
3300025274\|Ga0208183_1066440	Not Available	696	Open in IMG/M
3300025274\|Ga0208183_1080168	Not Available	614	Open in IMG/M
3300025277\|Ga0208180_1022632	All Organisms → Viruses → Predicted Viral	1866	Open in IMG/M
3300025277\|Ga0208180_1027747	All Organisms → Viruses → Predicted Viral	1630	Open in IMG/M
3300025277\|Ga0208180_1060396	Not Available	940	Open in IMG/M
3300025277\|Ga0208180_1080273	Not Available	762	Open in IMG/M
3300025280\|Ga0208449_1030230	Not Available	1597	Open in IMG/M
3300025280\|Ga0208449_1111543	Not Available	633	Open in IMG/M
3300025286\|Ga0208315_1002785	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium TMED8	7740	Open in IMG/M
3300025286\|Ga0208315_1072230	Not Available	864	Open in IMG/M
3300025286\|Ga0208315_1114272	Not Available	629	Open in IMG/M
3300025286\|Ga0208315_1143292	Not Available	537	Open in IMG/M
3300025293\|Ga0208934_1045983	Not Available	807	Open in IMG/M
3300025293\|Ga0208934_1097235	Not Available	504	Open in IMG/M
3300025296\|Ga0208316_1036957	All Organisms → Viruses → Predicted Viral	1094	Open in IMG/M
3300025296\|Ga0208316_1055560	Not Available	808	Open in IMG/M
3300025300\|Ga0208181_1076494	Not Available	658	Open in IMG/M
3300025301\|Ga0208450_1026577	All Organisms → Viruses → Predicted Viral	1598	Open in IMG/M
3300025301\|Ga0208450_1027169	Not Available	1574	Open in IMG/M
3300025301\|Ga0208450_1043974	Not Available	1129	Open in IMG/M
3300025301\|Ga0208450_1045679	Not Available	1099	Open in IMG/M
3300025301\|Ga0208450_1087184	Not Available	699	Open in IMG/M
3300025301\|Ga0208450_1096363	Not Available	652	Open in IMG/M
3300025873\|Ga0209757_10130915	Not Available	780	Open in IMG/M
3300025873\|Ga0209757_10300680	Not Available	511	Open in IMG/M
3300025873\|Ga0209757_10310109	Not Available	502	Open in IMG/M
3300028018\|Ga0256381_1048591	Not Available	655	Open in IMG/M
3300028022\|Ga0256382_1012624	Not Available	1658	Open in IMG/M
3300028039\|Ga0256380_1055737	Not Available	592	Open in IMG/M
3300032006\|Ga0310344_11099847	Not Available	663	Open in IMG/M
3300032278\|Ga0310345_10662703	Not Available	1009	Open in IMG/M
3300032278\|Ga0310345_12199645	Not Available	534	Open in IMG/M
3300032820\|Ga0310342_100789442	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → Pedosphaera → unclassified Pedosphaera → Pedosphaera sp.	1098	Open in IMG/M
3300032820\|Ga0310342_100938073	All Organisms → Viruses → Predicted Viral	1011	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	100.00%

Habitat	Taxonomy	Distribution
Marine	Environmental → Aquatic → Marine	100.00%

Habitat	Taxonomy	Distribution
Oceanic	Environmental → Aquatic → Marine → Oceanic	95.10%
Pelagic	Environmental → Aquatic → Marine → Pelagic	2.94%
Strait	Environmental → Aquatic → Marine → Strait	0.98%
Volcanic	Environmental → Aquatic → Marine → Volcanic	0.98%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Aquatic → Marine → Oceanic → Unclassified	95.10%
Unclassified	Environmental → Aquatic → Marine → Pelagic → Unclassified	2.94%
Unclassified	Environmental → Aquatic → Marine → Strait → Unclassified	0.98%
Unclassified	Environmental → Aquatic → Marine → Volcanic → Unclassified	0.98%

Habitat	Taxonomy	Distribution
Deep Ocean	Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean	72.55%
Marine	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine	17.65%
Seawater	Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater	4.90%
Seawater	Environmental → Aquatic → Marine → Pelagic → Unclassified → Seawater	2.94%
Seawater	Environmental → Aquatic → Marine → Strait → Unclassified → Seawater	0.98%
Deep Subsurface	Environmental → Aquatic → Marine → Volcanic → Unclassified → Deep Subsurface	0.98%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300002514	Marine viral communities from the Pacific Ocean - ETNP_6_85	Environmental	Open in IMG/M
3300002518	Marine viral communities from the Pacific Ocean - ETNP_6_100	Environmental	Open in IMG/M
3300006750	Marine viral communities from the Subarctic Pacific Ocean - 19_ETSP_OMZ_AT15317 metaG	Environmental	Open in IMG/M
3300006751	Marine viral communities from the Subarctic Pacific Ocean - 7_ETSP_OMZ_AT15161 metaG	Environmental	Open in IMG/M
3300006753	Marine viral communities from the Subarctic Pacific Ocean - 6_ETSP_OMZ_AT15160 metaG	Environmental	Open in IMG/M
3300006988	Marine viral communities from Cariaco Basin, Caribbean Sea - 24B_WHOI_OMZ_CsCl	Environmental	Open in IMG/M
3300008216	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_Geostar	Environmental	Open in IMG/M
3300008217	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_215	Environmental	Open in IMG/M
3300008219	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_b05	Environmental	Open in IMG/M
3300008220	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_908	Environmental	Open in IMG/M
3300009412	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_s2	Environmental	Open in IMG/M
3300009413	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_s12	Environmental	Open in IMG/M
3300009414	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_906	Environmental	Open in IMG/M
3300009418	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_s17	Environmental	Open in IMG/M
3300009602	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_231	Environmental	Open in IMG/M
3300009604	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_s16	Environmental	Open in IMG/M
3300009605	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_M9	Environmental	Open in IMG/M
3300009620	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_51	Environmental	Open in IMG/M
3300010883	western Arctic Ocean co-assembly	Environmental	Open in IMG/M
3300011013	Deep subsurface microbial communities from Kolumbo volcano to uncover new lineages of life (NeLLi) - 4SBTROV10_white metaG	Environmental	Open in IMG/M
3300017718	Marine viral communities from the Subarctic Pacific Ocean - Lowphox_11 viral metaG	Environmental	Open in IMG/M
3300017775	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 55 SPOT_SRF_2014-07-17	Environmental	Open in IMG/M
3300025103	Marine viral communities from the Subarctic Pacific Ocean - 16_ETSP_OMZ_AT15313 metaG (SPAdes)	Environmental	Open in IMG/M
3300025112	Marine viral communities from the Pacific Ocean - ETNP_2_130 (SPAdes)	Environmental	Open in IMG/M
3300025125	Marine viral communities from the Pacific Ocean - ETNP_2_1000 (SPAdes)	Environmental	Open in IMG/M
3300025141	Marine viral communities from the Pacific Ocean - ETNP_6_85 (SPAdes)	Environmental	Open in IMG/M
3300025251	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_906 (SPAdes)	Environmental	Open in IMG/M
3300025264	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_s12 (SPAdes)	Environmental	Open in IMG/M
3300025267	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_Geostar (SPAdes)	Environmental	Open in IMG/M
3300025270	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_904 (SPAdes)	Environmental	Open in IMG/M
3300025274	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_51 (SPAdes)	Environmental	Open in IMG/M
3300025277	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_s16 (SPAdes)	Environmental	Open in IMG/M
3300025280	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_s17 (SPAdes)	Environmental	Open in IMG/M
3300025286	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_215 (SPAdes)	Environmental	Open in IMG/M
3300025293	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_s2 (SPAdes)	Environmental	Open in IMG/M
3300025296	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_231 (SPAdes)	Environmental	Open in IMG/M
3300025300	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_s6 (SPAdes)	Environmental	Open in IMG/M
3300025301	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_908 (SPAdes)	Environmental	Open in IMG/M
3300025873	Marine viral communities from the Pacific Ocean - ETNP_6_1000 (SPAdes)	Environmental	Open in IMG/M
3300028018	Seawater viral communities from deep brine pools at the bottom of the Mediterranean Sea - LS1 1600m	Environmental	Open in IMG/M
3300028022	Seawater viral communities from deep brine pools at the bottom of the Mediterranean Sea - LS1 750m	Environmental	Open in IMG/M
3300028039	Seawater viral communities from deep brine pools at the bottom of the Mediterranean Sea - LS1 2300m	Environmental	Open in IMG/M
3300032006	Marine microbial communities from station ALOHA, North Pacific Subtropical Gyre - HC15-DNA-20-200_MG	Environmental	Open in IMG/M
3300032278	Marine microbial communities from station ALOHA, North Pacific Subtropical Gyre - HC15-DNA-20-500_MG	Environmental	Open in IMG/M
3300032820	Marine microbial communities from station ALOHA, North Pacific Subtropical Gyre - S1503-DNA-20-500_MG	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI25133J35611_100399272	3300002514	Marine	LEFLPDIEHWAMNMGCTSLEAWGRKGWLKILQDWKCSYHILTKXLKGRMH*
JGI25134J35505_100345852	3300002518	Marine	NFALTNGCTSLEIWGRKGWIKILKDWECTYHIITKDLTNRMH*
Ga0098058_10404112	3300006750	Marine	VEEFAKQTGCSSIEAWGRKGWLRALPDWKCSYHILTKEIK*
Ga0098040_10666241	3300006751	Marine	DWALEHGCVSLECWGRKGWLKVLKDWKCSYHIITKDLKGRMH*
Ga0098039_11703311	3300006753	Marine	LPMVEDWALTMGCTSLECWGRKGWLKVLKDWKCSYHIITKDLTTRMH*
Ga0098039_12738061	3300006753	Marine	NMGCTSLEAWGRKGWLKILRDWECTYHILTKDLTARMH*
Ga0098064_1295341	3300006988	Marine	WIKHFPMVETFAKQTGCSSIEAWGRKGWLKALPDWKCSYHILTKEINY*
Ga0114898_10164394	3300008216	Deep Ocean	INGCTSLEVWGRKAWLRILKDWECKYHIITKDLTARMH*
Ga0114898_10787912	3300008216	Deep Ocean	WAMELGCTSLEAWGRKGWLKVLQDWKCSYHILTKDLKGRMH*
Ga0114898_10962392	3300008216	Deep Ocean	GWIKYLPLIEDWALSVGCTSLECWGRKGWLKILKDWKCSYHILTKDMTSRMH*
Ga0114898_11545961	3300008216	Deep Ocean	AMELGCTSLEAWGRKGWLKVLKDWKCSYHILTKDLKGRMH*
Ga0114898_12182632	3300008216	Deep Ocean	LEVWGRKAWIKILKAWDWDCKYHIITKDLTSRMH*
Ga0114899_10481381	3300008217	Deep Ocean	TSLEAWGRKGWLKILRDWECTYHILTKDLTARMH*
Ga0114899_10992111	3300008217	Deep Ocean	IEDWALSMGCTSLECWGRKGWLKVLKDWKCSYHIITKDLTSRMH*
Ga0114899_11695521	3300008217	Deep Ocean	LHLIEDWALSVGCTSLECWGRKGWLKILKDWKCSYHILTKDLTARMH*
Ga0114905_10290024	3300008219	Deep Ocean	IEDWALSVGCTSLECWGRKGWLKILKDWKCSYHILTKDLTARMH*
Ga0114905_10657581	3300008219	Deep Ocean	IAGKSMEEWMQFLPMVEDWALSVGCTSLECWGRKGWLKVLKDWKCSYHIITKDLTSRMH*
Ga0114905_11249911	3300008219	Deep Ocean	IAGKSMEEWMQFLPMVEDWALSVGCTSLECWGRKGWLKVLKDWKCSYHIITKDLTARMH*
Ga0114905_12228991	3300008219	Deep Ocean	TSLEAWGRKGWLKVLQDWKCSYHILTKDLKGRMH*
Ga0114905_12568911	3300008219	Deep Ocean	LPAIEEWAMELGCTSLEAWGGKGWLKVCQDWKCSYHILTKDLKSRMH*
Ga0114910_10709992	3300008220	Deep Ocean	EKWIGYIPLIEDWALSMGCTSLECWGRKGWLKVLKDWKCSYHIITKDLTSRMH*
Ga0114910_11042611	3300008220	Deep Ocean	VEDWALSVGCTSLECWGRKGWLKVLKDWKCSYHIITKDLTARMH*
Ga0114910_11156561	3300008220	Deep Ocean	TSLEVWGRKAWLRILKDWECKYHIITKDLTARMH*
Ga0114910_12155002	3300008220	Deep Ocean	EDWALSVGCTSLECWGRKGWLKILKDWRCSYHILTKDLTARMH*
Ga0114903_10889621	3300009412	Deep Ocean	WIKYLHLIEDWALSVGCTSLECWGRKGWLKILKDWKCSYHILTKDLTTRMH*
Ga0114903_11039931	3300009412	Deep Ocean	LEEWALENGATGLECWGRKGWLKILDDWKCSYHVLTKDLKSRMH*
Ga0114903_11174351	3300009412	Deep Ocean	DIEHWAMNVGCTSLEAWGRKGWLRILQDWKCSYHILTKDLTNRMH*
Ga0114903_11212591	3300009412	Deep Ocean	IKYLHLIEDWALSAGCTSLECWGRKGWLKILKDWKCSYHIITKDLTSRMH*
Ga0114902_10912922	3300009413	Deep Ocean	CTSLECWGRKGWLKVLKDWKCSYHIITKDLKGRMH*
Ga0114909_10474522	3300009414	Deep Ocean	HFLPAIEEWAMELGCTSLEAWGRKGWLKVLQDWKCSYHILTKDLKGRMH*
Ga0114909_10741242	3300009414	Deep Ocean	LPAIEEWAMELGCTSLEAWGRKGWLKVLQDWKCSYHILTKDLKGRMH*
Ga0114909_11341491	3300009414	Deep Ocean	DIEHWAMNVGCTSLEAWGRKGWLRILQDWKCSYHILTKDLTARMH*
Ga0114908_10253981	3300009418	Deep Ocean	IEEWAMELGCTSLEAWGRKGWLKVLQDWKCSYHILTKDLKGRMH*
Ga0114908_10413201	3300009418	Deep Ocean	AIEEWAMELGCTSLEAWGRKGWLKVLQDWKCSYHILTKDLKSRMH*
Ga0114908_11618331	3300009418	Deep Ocean	IEEWAMELGCTSLEAWGRKGWLKVLKDWKCSYHILTKDLKGRMH*
Ga0114900_10600421	3300009602	Deep Ocean	MVEDWALTMGCTALECWGRKGWLKVLKDWKCSYHIITKDLTTRMH*
Ga0114900_10768161	3300009602	Deep Ocean	MDGWIKYLPLIEDWALSVGCTSLECWGRKGWLKILKDWKCSYHILTKDLTSRMH*
Ga0114900_11235661	3300009602	Deep Ocean	HWAMNMGCTALEAWGRKGWLKILRDWKCSYHILTKDLKARMH*
Ga0114901_10377131	3300009604	Deep Ocean	PLIEDWALSMGCTSLECWGRKGWLKVLKDWKCSYHIITKDLTSRMH*
Ga0114901_10669191	3300009604	Deep Ocean	PLIEDWALSMGCTSLECWGRKGWLKVLKDWKCSYHILTKDLTTRMH*
Ga0114901_10828482	3300009604	Deep Ocean	WIKYLHLIEDWALSVGCTSLECWGRKGWLKILKDWKCSYHILTKDLTGRMH*
Ga0114901_10905181	3300009604	Deep Ocean	IKYLHLIEDWALSVGCTSLECWGRKGWLKILKDWKCSYHILTKDLTARMH*
Ga0114901_11908352	3300009604	Deep Ocean	LPSIEEWAMELGCTSLEAWGRKGWLKVLKDWKCSYHILTKDLKGRMH*
Ga0114901_12423922	3300009604	Deep Ocean	WIKYLHLIEDWALSVGCTSLECWGRKGWLKILKDWKCSYHIITKDLTGRMH*
Ga0114906_10033947	3300009605	Deep Ocean	EMDKWIHQLPMVEDWALTMGCTALECWGRKGWLKVLKDWKCSYHIITKDLTSRMH*
Ga0114906_11298352	3300009605	Deep Ocean	EKWIGYIPRIEDWALSMGCTSLECWGRKGWLKVLKDWKCSYHIITKDLTSRMH*
Ga0114906_11747061	3300009605	Deep Ocean	MDGWIKYLPLIEDWALSVGCTSLECWGRKGWLKILKDWKCSYHILTKDLTTRMH*
Ga0114912_10225472	3300009620	Deep Ocean	GKSMEEWIQFLPVVEDWALSVGCTSLECWGRKGWLKVLKDWKCSYHIITKDLKGRMH*
Ga0114912_10436373	3300009620	Deep Ocean	HLIEDWALSAGCTSLECWGRKGWLKILRDWRCSYHILTKDLTTRMH*
Ga0114912_10518371	3300009620	Deep Ocean	MDGWIKYLHLIEDWALSVGCTSLECWGRKGWLKILKDWRCSYHILTKDLTTRMH*
Ga0133547_119245422	3300010883	Marine	NLGCTSLEAWGRKGWLKILKVWECSYHILTTDLKGRMH*
Ga0114934_102802241	3300011013	Deep Subsurface	PDVEHWAMGMGCSSLELWGRKGWLKILKDWECSYHVLTKDLKGRMH*
Ga0181375_10560352	3300017718	Marine	QFLPDIEHWASSVGCTALEAWGRKGWLKILKDWECSYHILTKEIKGRMH
Ga0181432_12541352	3300017775	Seawater	ALNMGCTSLEVWGRKGWLKILRDWECSYHILTKDLTDRMH
Ga0208013_10600521	3300025103	Marine	EFAKQTGCSSIEAWGRKGWLRALPDWKCSYHILTKEIK
Ga0209349_10046186	3300025112	Marine	EFLPDIEHWAMNMGCTSLEAWGRKGWLKILQDWKCSYHILTKNLKGRMH
Ga0209644_10696711	3300025125	Marine	ALNMGCTSLEVWGRKGWLKILRDWECSYHILTKDLTARMH
Ga0209644_10791092	3300025125	Marine	NGCTFLEVWGRKAWIKILKEWDWECNYHIITKDLTARMH
Ga0209756_10664402	3300025141	Marine	LEFLPDIEHWAMNMGCTSLEAWGRKGWLKILQDWKCSYHILTKDLKGRMH
Ga0209756_12277951	3300025141	Marine	AMGMGCSSLEAWGRKGWLKILTDWKCSYHILTKDLKGRMH
Ga0208182_10485371	3300025251	Deep Ocean	HFLPAIEEWAMELGCTSLEAWGRKGWLKVLQDWKCSYHILTKDLKGRMH
Ga0208029_10198043	3300025264	Deep Ocean	IEDWALSAGCTSLECWGRKGWLKILRDWKCSYHILTKDLTTRMH
Ga0208029_10319962	3300025264	Deep Ocean	YKWIGYIPTIEDWALSLGCTSLECWGRKGWLKVLKDWKCSYHIITKDLTARMH
Ga0208179_10422871	3300025267	Deep Ocean	DGWIKYLHLIEDWALSVGCTSLECWGRKGWLKILKDWKCSYHILTKDLTTRMH
Ga0208179_10449331	3300025267	Deep Ocean	PLIEDWALSVGCTSLECWGRKGWLKILKDWRCSYHILTKDLTARMH
Ga0208813_10507122	3300025270	Deep Ocean	IQFLPVVEDWALSVGCTSLECWGRKGWLKVLKDWKCSYHIITKDLKGRMH
Ga0208813_10671321	3300025270	Deep Ocean	FLPDIEYWAMNMGCTSLEAWGRKGWLKILQDWKCSYHILTKDLKGRMH
Ga0208183_10326761	3300025274	Deep Ocean	EWAMELGCTSLEAWGRKGWLKVLQDWKCSYHILTKDLKGRMH
Ga0208183_10664402	3300025274	Deep Ocean	GKSMEEWIQFLPVVEDWALSVGCTSLECWGRKGWLKVLKDWKCSYHIITKDLKGRMH
Ga0208183_10801681	3300025274	Deep Ocean	AMELGCTSLEAWGRKGWLKVLQDWKCSYHILTKDLKGRMH
Ga0208180_10226323	3300025277	Deep Ocean	VEDFALMNGCTFLEVWGRKAWVKILKEWDWECKYHIITKDLTARMH
Ga0208180_10277471	3300025277	Deep Ocean	DWALTMGCTALECWGRKGWLKVLKDWKCSYHIITKDLTTRMH
Ga0208180_10603962	3300025277	Deep Ocean	LIEDWALSVGCTSLECWGRKGWLKILKDWKCSYHILTKDLTGRMH
Ga0208180_10802731	3300025277	Deep Ocean	AIEEWAMELGCTSLEAWGRKGWLKVLQDWKCSYHILTKDLKSRMH
Ga0208449_10302301	3300025280	Deep Ocean	SMGCTSLECWGRKGWLKVLKDWKCSYHIITKDLTSRMH
Ga0208449_11115431	3300025280	Deep Ocean	DEMDKWIHQLPMVEDWALTMGCTALECWGRKGWLKVLKDWKCSYHIITKDLTTRMH
Ga0208315_10027851	3300025286	Deep Ocean	DEMDKWIHQLPMVEDWALTMGCTALECWGRKGWLKVLKDWKCSYHIITKDLTSRMH
Ga0208315_10722301	3300025286	Deep Ocean	INGCTSLEVWGRKAWLRILKDWECKYHIITKDLTARMH
Ga0208315_11142722	3300025286	Deep Ocean	GCTSLEAWGRKGWLKVLQDWKCSYHILTKDLKGRMH
Ga0208315_11432922	3300025286	Deep Ocean	PTVEDWALSLGCTSLECWGRKGWLKVLKDWKCSYHIITKDLTARMH
Ga0208934_10459831	3300025293	Deep Ocean	IEDWALSVGCTSLECWGRKGWLKILKDWKCSYHILTKDLTGRMH
Ga0208934_10972352	3300025293	Deep Ocean	IPLIEDWALSMGCTSLECWGRKGWLKVLKDWKCSYHIITKDLTGRMH
Ga0208316_10369571	3300025296	Deep Ocean	GYIPLIEDWALSMGCTSLECWGRKGWLKILKDWKCSYHIITKDLTSRMH
Ga0208316_10555601	3300025296	Deep Ocean	LPLIEDWALSVGCTSLECWGRKGWLKILKDWRCSYHILTKDLTTRMH
Ga0208181_10764941	3300025300	Deep Ocean	NMGCTSLEAWGRKGWLKILQDWKCSYHILTKDLKGRMH
Ga0208450_10265771	3300025301	Deep Ocean	IEDWALSMGCTSLECWGRKGWLRVLKDWKCSYHIITKDLTSRMH
Ga0208450_10271691	3300025301	Deep Ocean	LSMGCTSLECWGRKGWLKILKDWKCSYHIITKDLTTRMH
Ga0208450_10439741	3300025301	Deep Ocean	AMNMGCTALEAWGRKGWLKILRDWKCSYHILTKDLKARMH
Ga0208450_10456791	3300025301	Deep Ocean	NGCTFIEVWGRKAWLRILKDWKCTYHIITKDLTARMH
Ga0208450_10871842	3300025301	Deep Ocean	IEEWAMELGCTSLEAWGRKGWLKVLQDWKCSYHILTKDLKTRMH
Ga0208450_10963631	3300025301	Deep Ocean	IEDWALSMGCTSLECWGRKGWLKILKDWKCSYHIITKDLTSRMH
Ga0209757_101309151	3300025873	Marine	KWIQFLPDIEHWAMNIGCTALEAWGRKGWLRILQDWKCSYHILTKDLTSRMH
Ga0209757_103006801	3300025873	Marine	WALSVGCTSLECWGRKGWLKILKDWRCSYHILTKDLTTRMH
Ga0209757_103101092	3300025873	Marine	GCTFLEVWGRGAWVKILKKWDWECKYHIITKDLTARMH
Ga0256381_10485911	3300028018	Seawater	WAMELGCTSLEAWGRKGWLKVLKDWKCSYHILTKDLKGRMH
Ga0256382_10126241	3300028022	Seawater	MDKWIEYIPLIEEWALSVGCTSLECWGRKGWLKILKDWKCSYHILTKDLTARMH
Ga0256380_10557371	3300028039	Seawater	PMVEDWALTMGCTALECWGRKGWLKVLKDWKCSYHIITKDLTTRMH
Ga0310344_110998471	3300032006	Seawater	LEMGCSSLELWGRKGWLKILKDWECSYHVLTKDLKGRIH
Ga0310345_106627031	3300032278	Seawater	WALSVGCTSLECWGRKGWLKVLKDWKCSYHIITKDLTARMH
Ga0310345_121996451	3300032278	Seawater	FIPLIEDWALSLGCTSLECWGRKGWLKVLKDWKCSYHIITKDLTARMH
Ga0310342_1007894422	3300032820	Seawater	FLEVWGRKAWIKILKEWDWECNYHIITKDLTARMH
Ga0310342_1009380733	3300032820	Seawater	DWINYIPKVEDWALTIGCSHIECWGRKGWEKILKDWKSSYTVLTKDLRKSRMH

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F100951

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences